Query         005100
Match_columns 714
No_of_seqs    180 out of 577
Neff          4.8 
Searched_HMMs 46136
Date          Thu Mar 28 18:03:12 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005100hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1172 Na+-independent Cl/HCO 100.0  5E-164  1E-168 1390.2  41.1  519    2-611   330-865 (876)
  2 TIGR00834 ae anion exchange pr 100.0  8E-156  2E-160 1350.2  40.0  510    2-605   339-882 (900)
  3 PF00955 HCO3_cotransp:  HCO3-  100.0  3E-140  7E-145 1169.1   1.0  457    1-551     2-510 (510)
  4 COG0659 SUL1 Sulfate permease   99.6 1.9E-14 4.2E-19  164.3  24.4  330   45-511    32-368 (554)
  5 TIGR00815 sulP high affinity s  99.5 1.3E-12 2.8E-17  149.5  24.2  330   47-508    27-375 (563)
  6 PRK11660 putative transporter;  99.5 4.7E-12   1E-16  145.1  23.9  330   47-506    42-394 (568)
  7 PF00916 Sulfate_transp:  Sulfa  98.7 6.6E-08 1.4E-12  100.6  11.5  258  141-514     3-269 (280)
  8 KOG0236 Sulfate/bicarbonate/ox  98.7   6E-07 1.3E-11  105.4  18.9  329   48-503    94-439 (665)
  9 TIGR03173 pbuX xanthine permea  98.5 9.1E-06   2E-10   90.0  21.6  267   40-356     5-279 (406)
 10 TIGR00801 ncs2 uracil-xanthine  98.4 7.4E-05 1.6E-09   83.3  23.7  268   40-356    15-295 (415)
 11 PRK11412 putative uracil/xanth  98.1 0.00065 1.4E-08   76.6  24.4  271   40-354    18-299 (433)
 12 TIGR03616 RutG pyrimidine util  98.0  0.0013 2.8E-08   74.1  23.0  292    1-354     1-304 (429)
 13 PRK10720 uracil transporter; P  97.8  0.0064 1.4E-07   68.5  24.6  253   40-354    24-284 (428)
 14 PF00860 Xan_ur_permease:  Perm  97.7  0.0016 3.4E-08   72.0  17.4  271   41-354    12-291 (389)
 15 COG2233 UraA Xanthine/uracil p  97.2   0.014 2.9E-07   66.3  18.0  269   40-354    26-304 (451)
 16 PF13792 Sulfate_tra_GLY:  Sulf  84.5    0.67 1.5E-05   41.4   2.2   51   47-103    29-80  (84)
 17 KOG1292 Xanthine/uracil transp  65.5 2.8E+02  0.0061   32.7  17.5   52  460-511   343-400 (510)
 18 COG2252 Xanthine/uracil/vitami  64.7 2.8E+02   0.006   32.3  19.9   90   70-169    57-153 (436)
 19 PF11840 DUF3360:  Protein of u  56.3 2.8E+02  0.0061   31.9  14.2  217   51-315    80-307 (492)
 20 KOG3817 Uncharacterized conser  43.0      21 0.00045   40.1   3.1   65  542-609   252-327 (452)
 21 KOG0828 Predicted E3 ubiquitin  34.6 1.5E+02  0.0032   35.0   8.1   82   76-168   266-368 (636)
 22 TIGR00843 benE benzoate transp  27.4 1.8E+02   0.004   33.2   7.4  102   65-180   253-354 (395)
 23 PF12075 KN_motif:  KN motif;    26.3      28  0.0006   27.3   0.5   18  325-342     3-20  (39)
 24 PF13172 PepSY_TM_1:  PepSY-ass  25.0      92   0.002   23.0   3.1   24  121-144     5-28  (34)
 25 PF10337 DUF2422:  Protein of u  22.4 2.7E+02  0.0058   32.0   7.7   17  122-138    18-34  (459)
 26 TIGR00815 sulP high affinity s  21.3 5.8E+02   0.013   30.1  10.4   92   43-153   268-359 (563)

No 1  
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=100.00  E-value=4.7e-164  Score=1390.25  Aligned_cols=519  Identities=42%  Similarity=0.745  Sum_probs=485.5

Q ss_pred             CCCCCCccchHhhhhhcccCcccccccccccCceeechhHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHH
Q 005100            2 EETFVPFRGIKNDLKGRLKCYKQDWTGGFRAGFRILAPTTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGII   81 (714)
Q Consensus         2 ~~t~~pf~Gi~~DikrR~p~Y~SDwtDg~~~~~~~last~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Gii   81 (714)
                      .+++++|||+++|+|||+|||+|||+||+|  .||+|+++||||||++||||||++|+++|||.+||+|+|+|||+||++
T Consensus       330 ~~tgrlFgGl~~DikrR~p~Y~SD~~Da~~--~~~la~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~Gii  407 (876)
T KOG1172|consen  330 QRTGRLFGGLVLDIKRRLPHYKSDFRDAFN--IQCLAATLFIYFACLLPAITFGGLLGEATDGLIGVVETLLSTALCGII  407 (876)
T ss_pred             ccccccchhHHHHHHhhcCCChHHHHHHhc--cccchHHHHHHHHhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999  689999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHH
Q 005100           82 HSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGL  161 (714)
Q Consensus        82 fslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~  161 (714)
                      ||+||||||+|+|+|||++|||+++|+||++++.    +||+||+|||+|++++|+++|++|+|.+|+|+||||||+||+
T Consensus       408 fslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~----dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~  483 (876)
T KOG1172|consen  408 FSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL----DYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGL  483 (876)
T ss_pred             HHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC----chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999999983    899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcCCCC-----------------CCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhcccccc
Q 005100          162 LIAMLFMQQAIRGVVEEFGIPE-----------------RENPNQMSLQPSWRFGNGMFALVLSFGLLYTGLRSRKARSW  224 (714)
Q Consensus       162 lIsviFi~eaik~lv~~F~~p~-----------------~~~~~~~~~~~~~~~~~~llsliL~~gt~~~a~~l~~~rss  224 (714)
                      |||+|||||||++++++|....                 .++.....++..|.++++++|+++++||+++|+++|+||+|
T Consensus       484 LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s  563 (876)
T KOG1172|consen  484 LISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSS  563 (876)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999887421                 12223345677888999999999999999999999999999


Q ss_pred             cccCccccchhccchhHHHHHHHhhhccccccccCCCCCcccCCCCCCCCCCCCCcEEeccCCCCChhHHHHhhhHHHHH
Q 005100          225 RYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNNVPRGIPRRLFSPNPWSPGAYSNWTIVKEMLDVPPLYIVGAFIPATMI  304 (714)
Q Consensus       225 ~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP~g~~~rl~~p~~~~p~~~r~W~V~~~~~~vP~~~if~A~iPAlll  304 (714)
                      +||++|+|++|+|||+|+||++|++++|+.+...+.+++.+...|.+|.+.  |||+|. +++++|+|++++|++||+++
T Consensus       564 ~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~vp~~~~~t~~~~--rgw~v~-~~~~~P~~~~~~A~ipalll  640 (876)
T KOG1172|consen  564 RYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLPVPSVFPPTWPFD--RGWFVP-PFGKNPWWYVFAALIPALLL  640 (876)
T ss_pred             CccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccccCcCCCCCCccc--CCeeeC-CCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998754455566666677777443  999985 55699999999999999999


Q ss_pred             HHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCCCCCCCCCCCCchhhhhHHHHHHhhhhhhhhhhh
Q 005100          305 AVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTA  384 (714)
Q Consensus       305 ~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGLPw~ngaipqSp~Ht~SLav~~~~~~r~~~v~~a  384 (714)
                      +||||||||||++|+|+||||||||+||||||+++|++|++||+|||||+|||+||||+|++||+++++           
T Consensus       641 ~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~-----------  709 (876)
T KOG1172|consen  641 TILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESE-----------  709 (876)
T ss_pred             HHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhc-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999998653           


Q ss_pred             hhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhhhHhhccCCCCCCCCCCcccccccccccccCcceeee
Q 005100          385 RKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKESTIELASSSGYIDAPVDETVFDVDKDIDDLLPVEVKE  464 (714)
Q Consensus       385 ~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~G~~~ap~~~~~fd~~~~i~~~l~v~V~E  464 (714)
                                                                            ..||||+++           +++|+|
T Consensus       710 ------------------------------------------------------~~apge~~~-----------i~~V~E  724 (876)
T KOG1172|consen  710 ------------------------------------------------------TSAPGEQPQ-----------IVGVRE  724 (876)
T ss_pred             ------------------------------------------------------ccCCCCccc-----------cccchh
Confidence                                                                  135666543           589999


Q ss_pred             echhhHHHHHHHHHHHhhccccCcccchhhhhHHHHhhcccCCCchHHHHHHHhhcCCCCccccccCCccccccccCccc
Q 005100          465 QRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKS  544 (714)
Q Consensus       465 QRvS~ll~~lLig~s~~~~PvL~~IP~aVL~GvFlYMGi~SL~GnQf~eRillLf~~~~~~y~~~~~~~~~yvr~Vp~~~  544 (714)
                      |||||++|++|||++++++|+|+.||+|||||||+|||++||+|||||||++|+|||+|||      |+.+|+||||+|+
T Consensus       725 QRvtgll~~llvgls~~~~pvL~~IP~~VL~GvFlYMgv~SL~Gnqf~eRl~Llf~p~k~~------p~~~ylrhv~~r~  798 (876)
T KOG1172|consen  725 QRVTGLLQFLLVGLSVLLLPVLKLIPMPVLYGVFLYMGVSSLPGNQFFERLLLLFMPPKHR------PDTLYLRHVPFRR  798 (876)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCCccHHHHHHHHHcCCcccC------CCccceeecchhh
Confidence            9999999999999999999999999999999999999999999999999999999999874      6789999999999


Q ss_pred             hhhHHHHHHHHhHhhheeeechhHHhhHHHHHHHHHHHhhhhcCcccChhhhhccChhhhccccccC
Q 005100          545 IAAFTLFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLDAAEYEEAPAIS  611 (714)
Q Consensus       545 IhlFT~iQl~~l~~~f~vt~~~~aai~FPl~i~lLIPiR~~lLPr~F~~~eL~~LD~~e~ee~~~~~  611 (714)
                      ||+||++|++||++||||+|++.|+|+||++++++||+|+++|||+|+++||++||++|+|+++..+
T Consensus       799 vhlFT~~Ql~~l~ll~~i~~~~~asi~FP~~ll~lVpiR~~~lp~~f~~~eL~~LD~~~~~~~~~~~  865 (876)
T KOG1172|consen  799 VHLFTLIQLLCLALLWAIKWSPVASIIFPLMLLLLVPIRQYLLPRLFKPRELQALDANEYEPEPDKP  865 (876)
T ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHhHHhhcCHHhhhhhchhhcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999776


No 2  
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=100.00  E-value=8.2e-156  Score=1350.24  Aligned_cols=510  Identities=28%  Similarity=0.511  Sum_probs=467.9

Q ss_pred             CCCCCCccchHhhhhhcccCcccccccccccCceeechhHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHH
Q 005100            2 EETFVPFRGIKNDLKGRLKCYKQDWTGGFRAGFRILAPTTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGII   81 (714)
Q Consensus         2 ~~t~~pf~Gi~~DikrR~p~Y~SDwtDg~~~~~~~last~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Gii   81 (714)
                      ++|++|||||++|+|||+|||+||||||||  +||+|+++||||||++||||||++|+++|+|.|||+|+|+|||+||++
T Consensus       339 ~rtg~~f~Gli~DikRR~p~Y~SD~tDa~~--~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Gii  416 (900)
T TIGR00834       339 QRTGRPFGGLIRDIKRRYPHYLSDFTDALN--PQCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVL  416 (900)
T ss_pred             hhcCCccchHHHHHHhhcccchHHHhhhhc--chhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999  699999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHH
Q 005100           82 HSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGL  161 (714)
Q Consensus        82 fslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~  161 (714)
                      ||+||||||+|+|+|||+++|++++|+||++++    .+|++||+|||+|+++||+++|++|+|++|||+||||||+|++
T Consensus       417 fslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~----~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~  492 (900)
T TIGR00834       417 FALLAAQPLLVVGFSGPLLVFEEAFFSFCESNG----LEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSF  492 (900)
T ss_pred             HhhhcCCceEEecCcccHHHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999999999999999986    3899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcCCCCC--------------CCCC---------------CCCCCCcccchhHHHHHHHHHHHH
Q 005100          162 LIAMLFMQQAIRGVVEEFGIPER--------------ENPN---------------QMSLQPSWRFGNGMFALVLSFGLL  212 (714)
Q Consensus       162 lIsviFi~eaik~lv~~F~~p~~--------------~~~~---------------~~~~~~~~~~~~~llsliL~~gt~  212 (714)
                      |||+||||||+++++++|+.+..              .|.+               ....++.+.++++++|++|++||+
T Consensus       493 lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf  572 (900)
T TIGR00834       493 LISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTF  572 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHH
Confidence            99999999999999999975210              0000               011233455788999999999999


Q ss_pred             HHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccccccCCCCCcccCCCCCCCCCCC--CCcEEeccCCCC-
Q 005100          213 YTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNNVPRGIPRRLFSPNPWSPGAY--SNWTIVKEMLDV-  289 (714)
Q Consensus       213 ~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP~g~~~rl~~p~~~~p~~~--r~W~V~~~~~~v-  289 (714)
                      ++|+++++||+|+||++++|++|+|||+||+|++||+++|.++ +++   .+++..|..+.|++.  |+|+| .+++.. 
T Consensus       573 ~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~-~v~---~~kl~Vp~~f~pt~p~~R~W~i-~p~~~~~  647 (900)
T TIGR00834       573 FLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIG-DTY---TQKLSVPSGLKVTNPSARGWFI-PPLGENR  647 (900)
T ss_pred             HHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhc-cCc---ccccCCCCCcCCCCCCCCCeEE-ccccccc
Confidence            9999999999999999999999999999999999999999764 232   235677777888765  99997 456544 


Q ss_pred             --ChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCCCCCCCCCCCCchhhhh
Q 005100          290 --PPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKS  367 (714)
Q Consensus       290 --P~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGLPw~ngaipqSp~Ht~S  367 (714)
                        |+|++|+|++||++++||||||||||++|+|+||||||||+||||||+++|++|++||+|||||+|||+||||+|++|
T Consensus       648 ~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~s  727 (900)
T TIGR00834       648 PFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANA  727 (900)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhhhHhhccCCCCCCCCCCccc
Q 005100          368 LATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKESTIELASSSGYIDAPVDETV  447 (714)
Q Consensus       368 Lav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~G~~~ap~~~~~  447 (714)
                      |+++++.                                                                 .+||++++
T Consensus       728 L~v~~~~-----------------------------------------------------------------~~~Ge~~~  742 (900)
T TIGR00834       728 LTVMSKA-----------------------------------------------------------------SAPGEKAQ  742 (900)
T ss_pred             Heeeeec-----------------------------------------------------------------cCCCCCCc
Confidence            9875431                                                                 23555432


Q ss_pred             ccccccccccCcceeeeechhhHHHHHHHHHHHhhccccCcccchhhhhHHHHhhcccCCCchHHHHHHHhhcCCCCccc
Q 005100          448 FDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYK  527 (714)
Q Consensus       448 fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~~~~PvL~~IP~aVL~GvFlYMGi~SL~GnQf~eRillLf~~~~~~y~  527 (714)
                                 +++|+||||||+++|+|||+|+++.|+|++||+|||||+|+|||++||+|||||+|++++|||+|++  
T Consensus       743 -----------i~~V~EQRvT~ll~~lLiglsv~~~PvL~~IP~aVL~GvFlYMGv~SL~GnQ~~~Ri~llf~p~k~~--  809 (900)
T TIGR00834       743 -----------IQEVREQRVTGLLVAVLVGLSILMEPILKRIPLAVLFGIFLYMGVTSLSGIQLFDRLLLLLMPPKYH--  809 (900)
T ss_pred             -----------cceeEeeehHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccCHHHHHHHHHhcCcccC--
Confidence                       3799999999999999999999999999999999999999999999999999999999999998863  


Q ss_pred             cccCCccccccccCccchhhHHHHHHHHhHhhheeeechhHHhhHHHHHHHHHHHhhhhcCcccChhhhhccChhhhc
Q 005100          528 VLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLDAAEYE  605 (714)
Q Consensus       528 ~~~~~~~~yvr~Vp~~~IhlFT~iQl~~l~~~f~vt~~~~aai~FPl~i~lLIPiR~~lLPr~F~~~eL~~LD~~e~e  605 (714)
                          |+.+|+|+||+||||+||++|++|++++|+|++ ++++|+||++|++|||+|++++||+|+++||++||++|.|
T Consensus       810 ----P~~~ylr~Vp~~kihlFT~iQl~cl~~l~~ik~-t~aai~FP~~iillVpiR~~llp~~F~~~eL~~LD~~d~~  882 (900)
T TIGR00834       810 ----PDVPYVRRVKTWRMHLFTAIQILCLALLWVVKS-TPASLAFPFVLILTVPLRRLLLPRLFTERELKCLDKEDAK  882 (900)
T ss_pred             ----CCchhhhcCChhHHHHHHHHHHHHHHHHHHHHH-HhHHHHhHHHHHHHHHHHHHHHhhcCCHHHHhhhCccccc
Confidence                788999999999999999999999999999998 5799999999999999999999999999999999988765


No 3  
>PF00955 HCO3_cotransp:  HCO3- transporter family Only partial structure;  InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=100.00  E-value=3e-140  Score=1169.15  Aligned_cols=457  Identities=36%  Similarity=0.669  Sum_probs=67.2

Q ss_pred             CCCCCCCccchHhhhhhcccCcccccccccccCceeechhHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHH
Q 005100            1 MEETFVPFRGIKNDLKGRLKCYKQDWTGGFRAGFRILAPTTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGI   80 (714)
Q Consensus         1 ~~~t~~pf~Gi~~DikrR~p~Y~SDwtDg~~~~~~~last~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Gi   80 (714)
                      ++||++|||||++|+|||+|||+|||+||+|  .||+++++||||||++||||||++|+++|+|.+|++|+|+|+++||+
T Consensus         2 l~rtg~~fgGl~~Dikrr~p~Y~SD~~D~~~--~~~~~~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi   79 (510)
T PF00955_consen    2 LQRTGRLFGGLINDIKRRLPWYWSDFTDGLN--LQCLAATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGI   79 (510)
T ss_dssp             -------------------STTCHHHCCSS---SHHHHHHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHH
T ss_pred             Ccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999999999999999999999  69999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHH
Q 005100           81 IHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTALLLFLLSILGACSIINRFTRIAGELFG  160 (714)
Q Consensus        81 ifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~  160 (714)
                      +||+||||||+|+|+|||+++|++++|+||++++    .+|++||+|||+|++++|+++|++|+|.+|||+||||||+|+
T Consensus        80 ~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~----~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~  155 (510)
T PF00955_consen   80 IFSLFSGQPLTILGSTGPVLVFEKILYKFCKSYG----LDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFA  155 (510)
T ss_dssp             HHHHCC--------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999986    389999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCC---------------CCCCC---------------------C--------------
Q 005100          161 LLIAMLFMQQAIRGVVEEFGIPER---------------ENPNQ---------------------M--------------  190 (714)
Q Consensus       161 ~lIsviFi~eaik~lv~~F~~p~~---------------~~~~~---------------------~--------------  190 (714)
                      +|||+|||+||+|+++++|+....               ++.+.                     +              
T Consensus       156 ~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c  235 (510)
T PF00955_consen  156 LLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSC  235 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999998873100               00000                     0              


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccccccCCCCCcccCCCC
Q 005100          191 SLQPSWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNNVPRGIPRRLFSPN  270 (714)
Q Consensus       191 ~~~~~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP~g~~~rl~~p~  270 (714)
                      +.+..+.++++++|++|++||+++|++++++|+|+|+++++|++|+|||+||+|++|++++|+.+.++|     ++..|+
T Consensus       236 ~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~~~~-----kL~vp~  310 (510)
T PF00955_consen  236 DDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGVDTP-----KLNVPS  310 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhccccc-----ccCCCC
Confidence            001133466789999999999999999999999999999999999999999999999999988764444     366777


Q ss_pred             CCCCCCC--CCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhc
Q 005100          271 PWSPGAY--SNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGL  348 (714)
Q Consensus       271 ~~~p~~~--r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gl  348 (714)
                      .++|+..  |+|+| .+++++|+|++++|++||+++++|+|||||||++|+|+||||||||+||||||+++|++|++||+
T Consensus       311 ~f~pt~~~~r~W~v-~p~~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sl  389 (510)
T PF00955_consen  311 SFKPTSPGKRGWFV-NPFGSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSL  389 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCeec-CcccCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHH
Confidence            7777654  89997 57889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCchhhhhHHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhh
Q 005100          349 IGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKES  428 (714)
Q Consensus       349 lGLPw~ngaipqSp~Ht~SLav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~  428 (714)
                      |||||+|||+||||+|++||+++++.                                                      
T Consensus       390 lGLPw~~aa~~~S~~Hv~sL~~~~~~------------------------------------------------------  415 (510)
T PF00955_consen  390 LGLPWMNAATPQSPMHVRSLAVESET------------------------------------------------------  415 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCcccCccCCHHHhCcccEEecc------------------------------------------------------
Confidence            99999999999999999999876541                                                      


Q ss_pred             hHhhccCCCCCCCCCCcccccccccccccCcceeeeechhhHHHHHHHHHHHhhccccCcccchhhhhHHHHhhcccCCC
Q 005100          429 TIELASSSGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPG  508 (714)
Q Consensus       429 ~~~~~~~~G~~~ap~~~~~fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~~~~PvL~~IP~aVL~GvFlYMGi~SL~G  508 (714)
                                 .+|||++++           ++|+||||||+++|+|||+|+++.|+|++||+|||+|+|+|||++||+|
T Consensus       416 -----------~~pGe~~~i-----------~~V~EqRvT~l~~~~Ligls~~l~pvL~~IP~~VL~GvFlymG~~sL~g  473 (510)
T PF00955_consen  416 -----------SAPGEKPKI-----------VGVREQRVTGLLVHLLIGLSLFLLPVLKLIPMPVLYGVFLYMGVTSLSG  473 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------ccCCCCCee-----------CeEEEecccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhheeeeecC
Confidence                       246665332           6999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCCCCccccccCCccccccccCccchhhHHHH
Q 005100          509 NQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLF  551 (714)
Q Consensus       509 nQf~eRillLf~~~~~~y~~~~~~~~~yvr~Vp~~~IhlFT~i  551 (714)
                      ||||||++|+|||+|+      +|+.+|+|+||+||||+||++
T Consensus       474 nq~~~Ri~ll~~~~k~------~P~~~ylr~Vp~~~ihlfT~I  510 (510)
T PF00955_consen  474 NQFFERILLLFMPPKH------YPDTHYLRRVPQRKIHLFTLI  510 (510)
T ss_dssp             ---TTTT------SS---------------TTHHHHHT-----
T ss_pred             ccHHHHHHHHccCccc------ccCCHHHCcCCCCeEEEEEeC
Confidence            9999999999999876      377899999999999999985


No 4  
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.64  E-value=1.9e-14  Score=164.25  Aligned_cols=330  Identities=19%  Similarity=0.199  Sum_probs=237.1

Q ss_pred             Hhhhhh-HHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHH-HHHHHHHHhhhccccccchhh
Q 005100           45 FASAIP-VISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVL-MYTFMFNFAKDRKDLGEKLFL  122 (714)
Q Consensus        45 FA~llP-aIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~i-f~~~ly~f~~~~~~lg~~~fL  122 (714)
                      .+.++| |++|+..-+      .+...-|.++.++|+++++|||.|..|.|+||++.+ ...++.+.. ++       ++
T Consensus        32 a~valP~ama~a~~aG------v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~-~~-------g~   97 (554)
T COG0659          32 AAVALPLAMAFAIAAG------VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLV-ET-------GL   97 (554)
T ss_pred             HHHHhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHH-HH-------HH
Confidence            455779 999998433      667889999999999999999999999999999543 334444444 33       44


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCcc--cchh
Q 005100          123 AWTGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSW--RFGN  200 (714)
Q Consensus       123 ~~~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~--~~~~  200 (714)
                      ...+-..+-++++++++..+...++++|+.|-.=-.|-.-|+++.+...++.+.+.=.   ..+.........+  ....
T Consensus        98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~---~~~~~~~~~~~l~~~~~~~  174 (554)
T COG0659          98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS---KVSGFWAKVSALFTVLLTI  174 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc---cccchHHHHHHHHHhcccc
Confidence            5556789999999999999999999999999999999999999999999988865311   1110000000000  0111


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccccccC-CC-CCcccCCCCCCCCCCCC
Q 005100          201 GMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNNVP-RG-IPRRLFSPNPWSPGAYS  278 (714)
Q Consensus       201 ~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP-~g-~~~rl~~p~~~~p~~~r  278 (714)
                      ...++++...++.+-+.+++.+  +..|+          ..+++++.|.+++.++.+.+ .| ++..+..+.|+      
T Consensus       175 ~~~~~~lg~~~l~il~~~~~~~--~~~P~----------~liaiv~~t~i~~~~~~~~~~~G~i~~~lp~~~~~------  236 (554)
T COG0659         175 NLATLLLGLLTLAILLFLPRLT--PRIPS----------PLIALVLGTLIVWIFPLDSLRYGEIPGSLPSGLPH------  236 (554)
T ss_pred             cHHHHHHHHHHHHHHHHccchh--hhCCc----------HHHHHHHHHHHHHHhcCCchhcccCcccCCcCCCc------
Confidence            2445556665666656555444  45555          45999999999988776553 22 33223222221      


Q ss_pred             CcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCCCCCCCCC
Q 005100          279 NWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGIPPSNGVI  358 (714)
Q Consensus       279 ~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGLPw~ngai  358 (714)
                       |    ...+++...+-.-+++|+.++++-+.|+-.|+.........   ..--+-+|.-+|+.|+++|+||-=|.+|++
T Consensus       237 -~----~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~---~~d~nrELiaqGiaNi~sglfgg~p~~g~~  308 (554)
T COG0659         237 -F----RLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT---KHDSNRELIAQGIANIASGLFGGIPATGSI  308 (554)
T ss_pred             -c----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHhhHHHHHHHHhCCccccchh
Confidence             2    23456666677777889999999999999999998775433   555678999999999999999977788888


Q ss_pred             CCCchhhhhHHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhhhHhhccCCCC
Q 005100          359 PQSPMHTKSLATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKESTIELASSSGY  438 (714)
Q Consensus       359 pqSp~Ht~SLav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~G~  438 (714)
                      .||..-.+                                                                     .|.
T Consensus       309 srS~~nv~---------------------------------------------------------------------sGa  319 (554)
T COG0659         309 SRSAINIK---------------------------------------------------------------------SGA  319 (554)
T ss_pred             HHHHHHHH---------------------------------------------------------------------hCC
Confidence            77711110                                                                     121


Q ss_pred             CCCCCCcccccccccccccCcceeeeechhhHHHHHHHHHHHh-hccccCcccchhhhhHHHHhhcccCCCchH
Q 005100          439 IDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVA-AMPLLKKIPTSVLWGYFAFMAIENLPGNQF  511 (714)
Q Consensus       439 ~~ap~~~~~fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~~-~~PvL~~IP~aVL~GvFlYMGi~SL~GnQf  511 (714)
                                               -+|+|+++.++++.+.++ +.|++.+||+++|.|+-++.|++-++--.+
T Consensus       320 -------------------------rT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~  368 (554)
T COG0659         320 -------------------------RTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLL  368 (554)
T ss_pred             -------------------------cChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHH
Confidence                                     479999999988887765 578999999999999999999987765333


No 5  
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.52  E-value=1.3e-12  Score=149.52  Aligned_cols=330  Identities=14%  Similarity=0.150  Sum_probs=214.4

Q ss_pred             hhhh-HHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHH-HHHHhhhccccccchhhhH
Q 005100           47 SAIP-VISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTF-MFNFAKDRKDLGEKLFLAW  124 (714)
Q Consensus        47 ~llP-aIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~-ly~f~~~~~~lg~~~fL~~  124 (714)
                      ..+| ++||+.+.+      +...--|.++.+.+++|++||+-|.+|.|+|+.+.++... +-++......  ..++...
T Consensus        27 ~~iP~~~ayA~lag------lpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~~~~~--~~~~~~~   98 (563)
T TIGR00815        27 LLIPQAMAYAILAG------LSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGLQYLF--DCDAIRL   98 (563)
T ss_pred             HHHHHHHHHHHHcC------CCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcCCCCc--ccHHHHH
Confidence            3566 999987653      3444559999999999999999999999999886655433 3334333210  1257888


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCccc--chh--
Q 005100          125 TGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSWR--FGN--  200 (714)
Q Consensus       125 ~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~~--~~~--  200 (714)
                      ..++++-++++++++..+....+++|+.+-.-..|..-++++.+...++.+...-..+...+.- +.....|.  ...  
T Consensus        99 a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~-~~~~~~~~~l~~~~~  177 (563)
T TIGR00815        99 AFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTL-GVVISTWAGLPNTHN  177 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChH-HHHHHHHHHhhhccc
Confidence            8899999999999999999999999999999999999999999999999987642110111100 00000000  001  


Q ss_pred             -HHHHHHHHHHHHHHHHHhcccccccccCccccchhc--cchhHHHHHHHhhhccccc---------cccCCCCCcccCC
Q 005100          201 -GMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIA--DYGVPLMVLVWTAVSYIPV---------NNVPRGIPRRLFS  268 (714)
Q Consensus       201 -~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~ia--DygvpiaVl~~t~vsy~~~---------~~vP~g~~~rl~~  268 (714)
                       ...++++++.++.+-+..++.+      ++.|+.+.  =-+..+++++-+.++++..         .++|.+.|     
T Consensus       178 ~~~~~~~i~~~~~~~l~~~~~~~------~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ip~g~p-----  246 (563)
T TIGR00815       178 WNWCTLVIGLVLLLFLLYTKKLG------KRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGHIPSGLS-----  246 (563)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhh------hhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEeecCCCCC-----
Confidence             2344444444444444333322      11111110  0112234444444443331         12333321     


Q ss_pred             CCCCCCCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhc
Q 005100          269 PNPWSPGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGL  348 (714)
Q Consensus       269 p~~~~p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gl  348 (714)
                       . |            +...+++..+...++.|+.++++-|+|+-.++.-..++.   ++..-.+-+|+.+|+.|+++|+
T Consensus       247 -~-~------------~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~---~~~~d~n~El~a~G~~N~~~~~  309 (563)
T TIGR00815       247 -F-F------------PPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMT---GYKIDANQELVAQGIANIVGSF  309 (563)
T ss_pred             -C-C------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcHHHHHhhHHHHHHHH
Confidence             0 0            111223334556677799999999999988887665542   2345677889999999999999


Q ss_pred             cCCCCCCCCCCCCchhhhhHHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhh
Q 005100          349 IGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKES  428 (714)
Q Consensus       349 lGLPw~ngaipqSp~Ht~SLav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~  428 (714)
                      +|--|.++..-||-...                                                               
T Consensus       310 fg~~p~~~s~srs~~~~---------------------------------------------------------------  326 (563)
T TIGR00815       310 FSCYPATGSLSRTAVNA---------------------------------------------------------------  326 (563)
T ss_pred             hCccCCCCcchHHHHHH---------------------------------------------------------------
Confidence            99888887775551110                                                               


Q ss_pred             hHhhccCCCCCCCCCCcccccccccccccCcceeeeechhhHHHHHHHHHHH-hhccccCcccchhhhhHHHHhhcccCC
Q 005100          429 TIELASSSGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCV-AAMPLLKKIPTSVLWGYFAFMAIENLP  507 (714)
Q Consensus       429 ~~~~~~~~G~~~ap~~~~~fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~-~~~PvL~~IP~aVL~GvFlYMGi~SL~  507 (714)
                            +.|.                         -+|+++++.++++.+.+ ++.|++..||++||.|+-+++|+. +.
T Consensus       327 ------~~G~-------------------------~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~-l~  374 (563)
T TIGR00815       327 ------KAGC-------------------------RTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRG-LI  374 (563)
T ss_pred             ------hcCC-------------------------cchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhc-cc
Confidence                  0121                         36899999998887774 468999999999999999999998 54


Q ss_pred             C
Q 005100          508 G  508 (714)
Q Consensus       508 G  508 (714)
                      .
T Consensus       375 ~  375 (563)
T TIGR00815       375 D  375 (563)
T ss_pred             C
Confidence            3


No 6  
>PRK11660 putative transporter; Provisional
Probab=99.47  E-value=4.7e-12  Score=145.13  Aligned_cols=330  Identities=17%  Similarity=0.128  Sum_probs=208.0

Q ss_pred             hhhh-HHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHH
Q 005100           47 SAIP-VISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWT  125 (714)
Q Consensus        47 ~llP-aIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~  125 (714)
                      ..+| ++||+..-+      +..+-.|.|+.+++++|++||+-|.++.|+|+.+.+..   ....++.+       +.-.
T Consensus        42 ~~iPq~mayA~lag------~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~---~~~~~~~~-------~~~~  105 (568)
T PRK11660         42 IAIPLAMALAIASG------VPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIL---YPVSQQFG-------LAGL  105 (568)
T ss_pred             HHHHHHHHHHHHcC------CChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHH---HHHHHHhh-------HHHH
Confidence            3667 999985422      44455699999999999999999999999888866653   34444432       2223


Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCC--CCCCCCCcccchhHHH
Q 005100          126 GWVCAWTALLLFLLSILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENP--NQMSLQPSWRFGNGMF  203 (714)
Q Consensus       126 ~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~--~~~~~~~~~~~~~~ll  203 (714)
                      .+..+.++++.++++.++...+++|+.+-.-..|..-++++.+...++.+...-..+..++.  +...+..+... ..+.
T Consensus       106 ~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l~~-~~~~  184 (568)
T PRK11660        106 LVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQALPT-INWG  184 (568)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhhcc-CCHH
Confidence            56789999999999999999999999999999999999999988888887542110000000  00000000000 0122


Q ss_pred             HHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccccc---c-----------CCC-----CCc
Q 005100          204 ALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNN---V-----------PRG-----IPR  264 (714)
Q Consensus       204 sliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~---v-----------P~g-----~~~  264 (714)
                      ++++++.++.+.+.+++.+.  ..|          +..+++++.|.++|.....   +           |++     +|.
T Consensus       185 ~~~~~~~~l~lll~~~~~~~--~iP----------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~~~g~~~~~ip~  252 (568)
T PRK11660        185 DALIGIVTLGVLILWPRLKI--RLP----------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVLADGSQGNGIPP  252 (568)
T ss_pred             HHHHHHHHHHHHHHHHhhcc--cCc----------hHHHHHHHHHHHHHHHhccCCCceeecccccccccccccccCCCC
Confidence            33444444444444443331  122          2236667777766544311   1           111     111


Q ss_pred             ccCCCCCCCCCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhh
Q 005100          265 RLFSPNPWSPGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTI  344 (714)
Q Consensus       265 rl~~p~~~~p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~  344 (714)
                      .+  |....|....++  ..+..++++..+..-+..|+.++++-|+|+-.++.-.+++.   +|..-.+-+|+.+|+.|+
T Consensus       253 ~~--p~~~~p~~~~~~--~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~---~~~~d~n~EL~a~G~aNi  325 (568)
T PRK11660        253 LL--PQFVLPWNLPGA--DGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMT---GTKHSANSELVGQGLGNI  325 (568)
T ss_pred             CC--CCCCCCcccccc--ccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcHHHHHHhHHHH
Confidence            11  111111000000  01123344444555666788999999999876555444332   244568899999999999


Q ss_pred             hhhccCCCCCCCCCCCCchhhhhHHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccch
Q 005100          345 LCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKE  424 (714)
Q Consensus       345 i~gllGLPw~ngaipqSp~Ht~SLav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (714)
                      ++|++|-.|.+|...||-+.                                                            
T Consensus       326 ~~~~fgg~p~~~s~srSa~n------------------------------------------------------------  345 (568)
T PRK11660        326 VAPFFGGITATAAIARSAAN------------------------------------------------------------  345 (568)
T ss_pred             HHHHhCcccccchHHHHHHH------------------------------------------------------------
Confidence            99999999987765555100                                                            


Q ss_pred             hhhhhHhhccCCCCCCCCCCcccccccccccccCcceeeeechhhHHHHHHHHHHH-hhccccCcccchhhhhHHHHhhc
Q 005100          425 MKESTIELASSSGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCV-AAMPLLKKIPTSVLWGYFAFMAI  503 (714)
Q Consensus       425 lk~~~~~~~~~~G~~~ap~~~~~fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~-~~~PvL~~IP~aVL~GvFlYMGi  503 (714)
                               .+.|.                         -+|+++++.++++++.+ ++.|++..||.+||.|+-+|.|+
T Consensus       346 ---------~~aGa-------------------------rT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~  391 (568)
T PRK11660        346 ---------VRAGA-------------------------TSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAW  391 (568)
T ss_pred             ---------HhcCC-------------------------CcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                     01232                         47999999999998885 56899999999999999999998


Q ss_pred             ccC
Q 005100          504 ENL  506 (714)
Q Consensus       504 ~SL  506 (714)
                      .-+
T Consensus       392 ~m~  394 (568)
T PRK11660        392 NMS  394 (568)
T ss_pred             Hhh
Confidence            743


No 7  
>PF00916 Sulfate_transp:  Sulfate transporter family;  InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are:   Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70.  Escherichia coli hypothetical protein ychM.  Caenorhabditis elegans hypothetical protein F41D9.5.   These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.73  E-value=6.6e-08  Score=100.60  Aligned_cols=258  Identities=22%  Similarity=0.252  Sum_probs=153.3

Q ss_pred             HhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCcc-cch--hHHHHHHHHHHHHHHHHH
Q 005100          141 ILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSW-RFG--NGMFALVLSFGLLYTGLR  217 (714)
Q Consensus       141 i~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~-~~~--~~llsliL~~gt~~~a~~  217 (714)
                      .+....+++|+.+-.=..|..-++++.+..+++.+...=..+..++.. .....-+ ...  ..+.+++++.+++..-+.
T Consensus         3 llrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   81 (280)
T PF00916_consen    3 LLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLF-SFIRALFQLISTITNWPTLAIGLVALVFLLI   81 (280)
T ss_pred             cccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-chhhhhhhhhhhccchhhhhhhhHHHHHHhh
Confidence            467788999999999999999999999999999987642111111110 0000000 000  122333333333333222


Q ss_pred             hcccccccccCccccchhccchhHHHHHHHhhhccccccc-----cCCCCCcccCCCCCCCCCCCCCcEEeccCCCCChh
Q 005100          218 SRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNN-----VPRGIPRRLFSPNPWSPGAYSNWTIVKEMLDVPPL  292 (714)
Q Consensus       218 l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~-----vP~g~~~rl~~p~~~~p~~~r~W~V~~~~~~vP~~  292 (714)
                      .+.... ++-.++.+.+-   +..+++++.+.+++....+     +...++..+  |.+.-|.           .++++.
T Consensus        82 ~~~~~~-~~~~~~~~~~p---~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~l--p~~~~p~-----------~~~~~~  144 (280)
T PF00916_consen   82 IRLLPK-RLPSRFWPPIP---APLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGL--PPPSLPS-----------FDISWS  144 (280)
T ss_pred             hhhhhh-hcccccccccc---ccceeeehhhhhhhhhhhccccccccccccccC--ccccCcc-----------cccccc
Confidence            222220 00011111111   2225566666666444211     111111111  1111111           122233


Q ss_pred             HHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCCCCCCCCCCCCchhhhhHHHHH
Q 005100          293 YIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLK  372 (714)
Q Consensus       293 ~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGLPw~ngaipqSp~Ht~SLav~~  372 (714)
                      .+...+..|+.++++-++|+-.++....++.   ++..-.+-||+-+|+.|+++|++|--|.+|..-||..+.+      
T Consensus       145 ~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~---~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~------  215 (280)
T PF00916_consen  145 LILDLLPTALAIAIVGFIESLLIAKSIAKKT---GYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYR------  215 (280)
T ss_pred             cccccchhHHHHHHHHHHHHHHhhhhhcccc---cccCCcHHHHHHhhhccccchhhcccccccccccchHHHh------
Confidence            3445567789999999999988877765533   4566788999999999999999998888888777721110      


Q ss_pred             HhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhhhHhhccCCCCCCCCCCcccccccc
Q 005100          373 HQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKESTIELASSSGYIDAPVDETVFDVDK  452 (714)
Q Consensus       373 ~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~G~~~ap~~~~~fd~~~  452 (714)
                                                                                     .|.              
T Consensus       216 ---------------------------------------------------------------~Ga--------------  218 (280)
T PF00916_consen  216 ---------------------------------------------------------------AGA--------------  218 (280)
T ss_pred             ---------------------------------------------------------------cCc--------------
Confidence                                                                           121              


Q ss_pred             cccccCcceeeeechhhHHHHHHHHHHHh-hccccCcccchhhhhHHHHhhcccCCCchHHHH
Q 005100          453 DIDDLLPVEVKEQRLSNLLQALMVGGCVA-AMPLLKKIPTSVLWGYFAFMAIENLPGNQFWER  514 (714)
Q Consensus       453 ~i~~~l~v~V~EQRvS~ll~~lLig~s~~-~~PvL~~IP~aVL~GvFlYMGi~SL~GnQf~eR  514 (714)
                                 .+|+++++.++.+.+.++ ..|++..||+++|.|+-++.|++ |-.-.-+++
T Consensus       219 -----------~t~~s~~~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~  269 (280)
T PF00916_consen  219 -----------RTRLSGLISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRR  269 (280)
T ss_pred             -----------ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHH
Confidence                       479999999988877754 57999999999999999999998 655333333


No 8  
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=98.69  E-value=6e-07  Score=105.42  Aligned_cols=329  Identities=18%  Similarity=0.227  Sum_probs=202.5

Q ss_pred             hhh-HHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHH-HHHHhhhccc-cccchhhhH
Q 005100           48 AIP-VISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTF-MFNFAKDRKD-LGEKLFLAW  124 (714)
Q Consensus        48 llP-aIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~-ly~f~~~~~~-lg~~~fL~~  124 (714)
                      ..| +|||+.+-+      +-.+-.|.|+.+..++|++||-++=.-+|+++=+.+|... +-+.+.+... .....++.-
T Consensus        94 ~VPQ~iaYa~la~------lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~v  167 (665)
T KOG0236|consen   94 SVPQGLAYALLAG------LPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQV  167 (665)
T ss_pred             ecchHHHHHHHcC------CChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHH
Confidence            456 788887754      5567889999999999999999999988876665555442 2234443220 001357777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCC------CCccc-
Q 005100          125 TGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSL------QPSWR-  197 (714)
Q Consensus       125 ~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~------~~~~~-  197 (714)
                      .+-+++-++++-+++.++....++.|+.+-.=-.|..-.|+.-+...+|.+.+.-+.+.+.++...-+      ...|. 
T Consensus       168 a~~lt~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (665)
T KOG0236|consen  168 ATTLTFLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT  247 (665)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc
Confidence            88899999999999999999999999999999999999999999999999987543332222110000      00010 


Q ss_pred             chhHHHHHHHHHHHHHHHHH--hccccccccc-CccccchhccchhHHHHHHHhhhccccccccCCCCCccc-CCCCCCC
Q 005100          198 FGNGMFALVLSFGLLYTGLR--SRKARSWRYG-SGSLRGFIADYGVPLMVLVWTAVSYIPVNNVPRGIPRRL-FSPNPWS  273 (714)
Q Consensus       198 ~~~~llsliL~~gt~~~a~~--l~~~rss~y~-~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP~g~~~rl-~~p~~~~  273 (714)
                      ..+..++++...  +....+  ..+.+ +++. -.--|+       .+.|++.|+++|....+-- +.+... ..|..+.
T Consensus       248 ~~~~~~~l~~l~--~L~~~k~~~~~~~-~k~~~v~~~~~-------li~vIi~T~~~~~~~~~~~-~~~~~~~~i~~g~~  316 (665)
T KOG0236|consen  248 LATLVLSLIFLV--VLLLTKELNPKFK-KKLFSVPIPFE-------LIVVIIGTLISYIFRLEGR-YGPIIVGEIPRGFP  316 (665)
T ss_pred             chhhhhHHHHHH--HHHHHHHhhhhhc-ccceeecccHH-------HHHHHHHHHHHHHhccccc-cCCeeeccCCCCCC
Confidence            122333332221  122222  11222 1111 122222       3788899999987742210 111111 2222111


Q ss_pred             CCCCCCcEEeccCCCCChhHHHHhhhH-HHHHHHHHhhhh-hhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCC
Q 005100          274 PGAYSNWTIVKEMLDVPPLYIVGAFIP-ATMIAVLYYFDH-SVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGI  351 (714)
Q Consensus       274 p~~~r~W~V~~~~~~vP~~~if~A~iP-Alll~iL~F~Dh-nIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGL  351 (714)
                      |            ..+|........++ |+.+++.-+.+| +|+...+.++.++.    --+-+|+.+|++|+++|+||.
T Consensus       317 ~------------~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~v----d~nqELiAlG~~Ni~sSff~~  380 (665)
T KOG0236|consen  317 P------------PSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKV----DSNQELIALGISNILSSFFGC  380 (665)
T ss_pred             C------------CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCee----CCChHHHHHHHHHHhhhhhce
Confidence            1            11222222224444 666777777776 33445554433333    345789999999999999996


Q ss_pred             CCCCCCCCCCchhhhhHHHHHHhhhhhhhhhhhhhhhccccchhHHHhhhhhhhhhcccccccCCCCccccchhhhhhHh
Q 005100          352 PPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSLQRNSNLSQLYRNMQEAYDEMQTPLVYQMPPALGLKEMKESTIE  431 (714)
Q Consensus       352 Pw~ngaipqSp~Ht~SLav~~~~~~r~~~v~~a~~~i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~  431 (714)
                      =|.+|..-||                         ++++                                         
T Consensus       381 ~p~tgs~sRS-------------------------av~~-----------------------------------------  394 (665)
T KOG0236|consen  381 YPTTGSFSRS-------------------------AVNI-----------------------------------------  394 (665)
T ss_pred             EcccchhhHH-------------------------HHHh-----------------------------------------
Confidence            6665554333                         1110                                         


Q ss_pred             hccCCCCCCCCCCcccccccccccccCcceeeeechhhHHHHHHHHHHHh-hccccCcccchhhhhHHHHhhc
Q 005100          432 LASSSGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGGCVA-AMPLLKKIPTSVLWGYFAFMAI  503 (714)
Q Consensus       432 ~~~~~G~~~ap~~~~~fd~~~~i~~~l~v~V~EQRvS~ll~~lLig~s~~-~~PvL~~IP~aVL~GvFlYMGi  503 (714)
                         ..|.                         .|+++|++.++++.+.+. +.|.+..||++||+.+-..-+.
T Consensus       395 ---~sG~-------------------------~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~  439 (665)
T KOG0236|consen  395 ---KSGG-------------------------RTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAIIISALI  439 (665)
T ss_pred             ---hcCC-------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence               0121                         588999999999988875 5799999999999998875543


No 9  
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=98.53  E-value=9.1e-06  Score=89.98  Aligned_cols=267  Identities=16%  Similarity=0.116  Sum_probs=147.1

Q ss_pred             hHHHHHhhhhhHHHHhhchhhhc-CCCcchHHHHHhhhHhHHHHH----HhcCcceeeeecCchhHHHHHHHHHHhhhcc
Q 005100           40 TTYIFFASAIPVISFGEQLERNT-NGALTAVQTLASTALCGIIHS----IVGGQPLLILGVAEPTVLMYTFMFNFAKDRK  114 (714)
Q Consensus        40 t~fifFA~llPaIAFG~ll~~~T-~g~~gv~E~LlStai~Giifs----lf~GQPL~IlGvTGP~~if~~~ly~f~~~~~  114 (714)
                      .+++|-+++++.+-.+..++-.. +-..-++-++++++++.++++    .+|+.--.+.|++++..   ..++..+++. 
T Consensus         5 ~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~---~~~~~~~~~~-   80 (406)
T TIGR03173         5 VLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAV---GPMIAIGAGG-   80 (406)
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHH---HHHHHHhhhh-
Confidence            35677777777665543321111 112334678899999999998    66788888889888633   3455455432 


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHhcccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCC
Q 005100          115 DLGEKLFLAWTGWVCAWTALLLFLLSILGACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQP  194 (714)
Q Consensus       115 ~lg~~~fL~~~~WVgiWtav~l~llai~nas~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~  194 (714)
                            .++-..-..++++++.++++. -...++|+++...--.|-++|++..+.-+++.....   +     ....+  
T Consensus        81 ------~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~---~-----~~~~~--  143 (406)
T TIGR03173        81 ------GLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGG---A-----GAPDF--  143 (406)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccC---C-----Ccccc--
Confidence                  223334577888888888883 344566777765555666677777777777655221   0     00000  


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhcccccc-ccCCCCCcccCCCCCCC
Q 005100          195 SWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVN-NVPRGIPRRLFSPNPWS  273 (714)
Q Consensus       195 ~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~-~vP~g~~~rl~~p~~~~  273 (714)
                       ....+    .++++.++.+.+..++         +.|+++.-+++.+++++-+.+++..+. +.+. +..     .|| 
T Consensus       144 -~~~~~----~~l~l~~l~~~il~~~---------~~~~~~~~~aiLi~ivvg~iva~~~g~~~~~~-i~~-----~~~-  202 (406)
T TIGR03173       144 -GSPQN----LGLALLTLVIILLLNR---------FGKGFLRSIAVLLGLVVGTIVAAALGMVDFSG-VAE-----APW-  202 (406)
T ss_pred             -cchHH----HHHHHHHHHHHHHHHH---------HhhhHHHHhHHHHHHHHHHHHHHHhcCCCchh-hcc-----CCe-
Confidence             01111    2223223222222221         223455667899999998888866542 2111 100     111 


Q ss_pred             CCCCCCcEEec-cC-CCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCC
Q 005100          274 PGAYSNWTIVK-EM-LDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGI  351 (714)
Q Consensus       274 p~~~r~W~V~~-~~-~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGL  351 (714)
                             .-.+ ++ +..|.. -+.++++.+.+++.-++|+.-+..-+++...+-.+....+-++...|+.|+++|++|-
T Consensus       203 -------~~~P~~~~~~~P~f-~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~  274 (406)
T TIGR03173       203 -------FALPTPFHFGAPTF-DLVAILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNT  274 (406)
T ss_pred             -------eeCCCCCcCCCCee-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCC
Confidence                   1000 00 112211 1234455566777777877554433333222111235667889999999999999998


Q ss_pred             CCCCC
Q 005100          352 PPSNG  356 (714)
Q Consensus       352 Pw~ng  356 (714)
                      ++.++
T Consensus       275 ~p~t~  279 (406)
T TIGR03173       275 FPYTS  279 (406)
T ss_pred             CCCcc
Confidence            87644


No 10 
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=98.36  E-value=7.4e-05  Score=83.35  Aligned_cols=268  Identities=16%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             hHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcc---eeeeecCchhHHHHHHHHHHhhhcccc
Q 005100           40 TTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQP---LLILGVAEPTVLMYTFMFNFAKDRKDL  116 (714)
Q Consensus        40 t~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQP---L~IlGvTGP~~if~~~ly~f~~~~~~l  116 (714)
                      .+.||-++.+|.+..|..+-+.-|-.+=++-+++.++++-+++++.++.|   ..+.|++--.  +-   +-.+.... .
T Consensus        15 ~l~~~~~~i~~p~iv~~~~l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~--i~---~~~~~~~~-~   88 (415)
T TIGR00801        15 LLAMFGGTVLVPLLVGLAPLSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAF--VS---PMIAIGSG-L   88 (415)
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHH--HH---HHHHHHhc-c
Confidence            45677788888777776663333344455678899999999999999999   6667765221  11   12122211 1


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHh---cc-cchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCC
Q 005100          117 GEKLFLAWTGWVCAWTALLLFLLSIL---GA-CSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSL  192 (714)
Q Consensus       117 g~~~fL~~~~WVgiWtav~l~llai~---na-s~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~  192 (714)
                      +.    +-..=..++++++.++++.+   .. -.+.|+|+....-...++|++....-+++.+......+     ...+ 
T Consensus        89 ~~----~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~-----~~~~-  158 (415)
T TIGR00801        89 GI----PAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAM-----SSAT-  158 (415)
T ss_pred             CH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcc-----cccc-
Confidence            11    11112455666666666654   12 23367788888889999999999999998774332211     0000 


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhcccccc-ccCCCCCcccCCCCC
Q 005100          193 QPSWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVN-NVPRGIPRRLFSPNP  271 (714)
Q Consensus       193 ~~~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~-~vP~g~~~rl~~p~~  271 (714)
                         +  .+ .-.+++++.++.+.+..++         +.|+++.-+++.+++++.+.+++..+. +.+ ++     ...|
T Consensus       159 ---~--~~-~~~~~vg~~~l~~~vl~~~---------~~~g~~~~~aiLigiv~g~i~a~~lg~~~~~-~v-----~~~~  217 (415)
T TIGR00801       159 ---Y--GS-LENLGVAFVVLALIILLNR---------FGKGFLKSISILIGILVGYILALFMGIVDFS-PV-----IDAP  217 (415)
T ss_pred             ---c--Cc-hhhHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHHHHHcCCccch-hh-----ccCc
Confidence               1  11 1123444444444433321         224456677999999999988876642 211 11     1112


Q ss_pred             CCCCCCCCcEEecc---C-CCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhccc-ccCCCCCCccchhHHHHHHhhhh
Q 005100          272 WSPGAYSNWTIVKE---M-LDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKE-FNLKKPPSYHYDLLLLGFLTILC  346 (714)
Q Consensus       272 ~~p~~~r~W~V~~~---~-~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~ke-~kLkKgsgyH~DLlllGi~t~i~  346 (714)
                      |        +-.++   + +++.    ..++++.+.+++.-++|+.=+..-+.++. .+..+....+-+++..|+-|+++
T Consensus       218 ~--------~~lP~~~~~g~~f~----~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~a  285 (415)
T TIGR00801       218 W--------FSLPTPFTFGPSFE----WPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLA  285 (415)
T ss_pred             c--------cccCCccCCCceec----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHH
Confidence            2        11111   1 0112    24555667788888889854443333322 23333566789999999999999


Q ss_pred             hccCCCCCCC
Q 005100          347 GLIGIPPSNG  356 (714)
Q Consensus       347 gllGLPw~ng  356 (714)
                      |++|-.+.++
T Consensus       286 glfG~~p~t~  295 (415)
T TIGR00801       286 GLFGGFPNTT  295 (415)
T ss_pred             HhcCCCCCcc
Confidence            9999887643


No 11 
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=98.12  E-value=0.00065  Score=76.59  Aligned_cols=271  Identities=14%  Similarity=0.148  Sum_probs=157.7

Q ss_pred             hHHHHHhhhhhHHHHhhchhhhcC-CCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhcccccc
Q 005100           40 TTYIFFASAIPVISFGEQLERNTN-GALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGE  118 (714)
Q Consensus        40 t~fifFA~llPaIAFG~ll~~~T~-g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~  118 (714)
                      .+.||-.+++|.+-.+..++-..+ -.+=++-+++.++++.++.+.+|..=.++.|+++.   |-..+..+|......|.
T Consensus        18 vl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~---~~~~~~~i~~~~~~~g~   94 (433)
T PRK11412         18 FFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGL---WWGTILTITLGEASRGT   94 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchH---HHHHHHHHHhcccccCc
Confidence            566777788888777766553222 23345577889999999999998877778888876   44455566643211121


Q ss_pred             chh---hhHHHHHHHHHHHHHHHHHHhc-ccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHh-cCCCCCCCCCCCCCC
Q 005100          119 KLF---LAWTGWVCAWTALLLFLLSILG-ACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEE-FGIPERENPNQMSLQ  193 (714)
Q Consensus       119 ~~f---L~~~~WVgiWtav~l~llai~n-as~li~~~TRfteEiF~~lIsviFi~eaik~lv~~-F~~p~~~~~~~~~~~  193 (714)
                       .+   +.-..+..+=++++.++++.++ ...+.|+||-...-..=++|++-.+--+++.+... +..  .+     ++.
T Consensus        95 -~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~--~~-----~~~  166 (433)
T PRK11412         95 -PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI--AD-----PNG  166 (433)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC--cc-----ccc
Confidence             11   1111344566677778887777 44566777877777888888988899999877542 110  00     110


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhcc-ccccccCCCCCcccCCCCCC
Q 005100          194 PSWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSY-IPVNNVPRGIPRRLFSPNPW  272 (714)
Q Consensus       194 ~~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy-~~~~~vP~g~~~rl~~p~~~  272 (714)
                       +|.    +..+.+++.++...+.+..         +-|++++-|++.+++++-..+.. ..+.+.              
T Consensus       167 -~~~----~~~~~~a~~~l~~il~~~~---------~~~g~~~~~svLiGiv~G~v~a~~~~g~d~--------------  218 (433)
T PRK11412        167 -KIQ----LPPFGLSVAVMCLVLAMII---------FLPQRIARYSLLVGTIVGWILWAFCFPSSH--------------  218 (433)
T ss_pred             -ccc----hHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHHhCCCc--------------
Confidence             111    1223344444443333221         23667788999999988776632 222110              


Q ss_pred             CCCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhh----hhhhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhc
Q 005100          273 SPGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYF----DHSVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGL  348 (714)
Q Consensus       273 ~p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~----DhnIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gl  348 (714)
                      ++...-.|... ++ ..|...=..++++.+++++.-..    |...++.+.+++   ..|...+|--++.=|+.++++|+
T Consensus       219 ~~v~~a~w~~~-pf-G~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~---~~~~~~l~rgi~~dGi~s~lagl  293 (433)
T PRK11412        219 SLSGELHWQWF-PL-GSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQ---GAGNTRYRRSFVATGFMTLITVP  293 (433)
T ss_pred             chhccCCceee-cC-CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCcccccchhhccHHHHHHHh
Confidence            00011224322 22 23320112344555555554443    455566665443   33355777888999999999999


Q ss_pred             cCCCCC
Q 005100          349 IGIPPS  354 (714)
Q Consensus       349 lGLPw~  354 (714)
                      +|-++.
T Consensus       294 fg~~p~  299 (433)
T PRK11412        294 LAVIPF  299 (433)
T ss_pred             cCCCCC
Confidence            998875


No 12 
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=97.96  E-value=0.0013  Score=74.07  Aligned_cols=292  Identities=13%  Similarity=0.149  Sum_probs=145.4

Q ss_pred             CCCCCCCccchHhhhhhcccCcccccccccccCceeechhHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHH
Q 005100            1 MEETFVPFRGIKNDLKGRLKCYKQDWTGGFRAGFRILAPTTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGI   80 (714)
Q Consensus         1 ~~~t~~pf~Gi~~DikrR~p~Y~SDwtDg~~~~~~~last~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Gi   80 (714)
                      |.|.+.|-==...|.+||..|=.+|.-...+.-.--+--.+.||-.++++.+-.|          ++..++++.++++-+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plilg----------l~~~~tl~~sGi~Tl   70 (429)
T TIGR03616         1 MAEPWFPKWKPKQGSLEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLMG----------FDPNLTILMSGIGTL   70 (429)
T ss_pred             CCCccCCCceeccccCcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCHhHHHHHHHHHHH
Confidence            4444444322334545564443455443222100012234556666666655554          223378999999999


Q ss_pred             HHHHh--cCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHhcc----cchhhhcccc
Q 005100           81 IHSIV--GGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTALLLFLLSILGA----CSIINRFTRI  154 (714)
Q Consensus        81 ifslf--~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav~l~llai~na----s~li~~~TRf  154 (714)
                      ++++.  ++-|+ +.|+++-   |...+-..+.. ...|..++++-..-..+-++++.++++.+..    ..+.|+++-.
T Consensus        71 lQ~~~~G~rlP~-v~G~sf~---f~~~~~~~~~~-~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPv  145 (429)
T TIGR03616        71 LFFLITGGRVPS-YLGSSAA---FVGAVIAATGY-NGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPV  145 (429)
T ss_pred             HHHHHhCCCcee-EEcCcHH---HHHHHHHHHhh-cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcH
Confidence            99864  55565 4465543   33333322211 1111224666667788888888888887754    3344556655


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhcccccccccCccccch
Q 005100          155 AGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGF  234 (714)
Q Consensus       155 teEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~  234 (714)
                      ..-...++|++-.+.-+++....       .+     ++ +|   .+++++   ++++...+             +.|++
T Consensus       146 V~G~vv~lIGlsL~~vg~~~~~~-------~~-----~~-~~---~al~tl---~~i~l~~l-------------~~~~~  193 (429)
T TIGR03616       146 VTGAVVMAIGLNLAPIAVKSVSA-------SG-----FD-SW---MAVLTI---LCIGAVAV-------------FTRGM  193 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-------cc-----cc-cH---HHHHHH---HHHHHHHH-------------HHHHH
Confidence            55555566666666666654211       00     00 11   133222   22222222             22456


Q ss_pred             hccchhHHHHHHHhhhccccc--cccCCCCCcccCCCCCCCCCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhh
Q 005100          235 IADYGVPLMVLVWTAVSYIPV--NNVPRGIPRRLFSPNPWSPGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDH  312 (714)
Q Consensus       235 iaDygvpiaVl~~t~vsy~~~--~~vP~g~~~rl~~p~~~~p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~Dh  312 (714)
                      ++-+++.+++++.+.+++...  ...+..+        .+++-....|+-.+++. .|.+. +.++++-+..++.-++|+
T Consensus       194 l~~~avLiGivvG~iva~~l~~~~g~~~~v--------d~s~v~~a~~~~lP~~~-~p~f~-~~~il~~~~~~lv~~~es  263 (429)
T TIGR03616       194 LQRLLILVGLIAAYLAYFILTNVFGLGKAV--------DFSPISQAAWFGLPNFH-TPVFN-ANAMLLIAPVALILVAEN  263 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccc--------cCcccccCccccCCcCC-CceEc-HHHHHHHHHHHHHHHHHh
Confidence            677799999998887765421  0011100        01111122344333322 33111 233333333444456665


Q ss_pred             hhH----HHHhhcccccCCCCCCccchhHHHHHHhhhhhccCCCCC
Q 005100          313 SVA----SQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGIPPS  354 (714)
Q Consensus       313 nIs----s~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGLPw~  354 (714)
                      -=+    +.+++++     +....+-.+..-|+.|.++|++|-++.
T Consensus       264 iG~~~a~~~~~~~~-----~~~~i~r~l~adGl~t~~agl~g~~p~  304 (429)
T TIGR03616       264 LGHFKAVAGMTGRN-----LDPYMGRAFVGDGLATMLSGSVGGTGV  304 (429)
T ss_pred             hHHHHHHHHHhCCC-----CCchhccchhhhhHHHHHHHhcCCCCC
Confidence            322    2222221     112367778899999999999998864


No 13 
>PRK10720 uracil transporter; Provisional
Probab=97.78  E-value=0.0064  Score=68.50  Aligned_cols=253  Identities=16%  Similarity=0.163  Sum_probs=130.1

Q ss_pred             hHHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcc-eeeeecCchhHHHHHHHHHHhhhcccccc
Q 005100           40 TTYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQP-LLILGVAEPTVLMYTFMFNFAKDRKDLGE  118 (714)
Q Consensus        40 t~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQP-L~IlGvTGP~~if~~~ly~f~~~~~~lg~  118 (714)
                      .+.||-++++|-+-+|          ++..++++.++++-++++.+.|-- -++.|++   -.|...+-.... .+   .
T Consensus        24 vl~m~~~~i~~Pli~g----------l~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~s---fa~i~~~~~~~~-~~---~   86 (428)
T PRK10720         24 LFAMFGATVLVPILFH----------INPATVLLFNGIGTLLYLFICKGKIPAYLGSS---FAFISPVLLLLP-LG---Y   86 (428)
T ss_pred             HHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHhccCccceEEeCc---HHHHHHHHHHHH-cc---H
Confidence            5568888888888774          334568999999999999887533 3344543   223322322332 11   1


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhc----ccchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCC
Q 005100          119 KLFLAWTGWVCAWTALLLFLLSILG----ACSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQP  194 (714)
Q Consensus       119 ~~fL~~~~WVgiWtav~l~llai~n----as~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~  194 (714)
                       ...   .=..++++++.++++.+-    ...+.++|+...--.|-++|++--+.-+++.. ...  ++  +..   +  
T Consensus        87 -~~~---lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~-g~~--~~--~~~---~--  152 (428)
T PRK10720         87 -EVA---LGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMA-GLL--PA--EGQ---T--  152 (428)
T ss_pred             -HHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhc-ccc--CC--CCc---c--
Confidence             111   225677888888888762    22456778877666777777766555555321 100  00  000   0  


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhcccccc-ccCCCCCcccCCCCCCC
Q 005100          195 SWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVN-NVPRGIPRRLFSPNPWS  273 (714)
Q Consensus       195 ~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~-~vP~g~~~rl~~p~~~~  273 (714)
                       ..    ...+++++.++.+.+...     +    +.|+++.-+++.+++++-+.+++..+. +.. .+.     ..+|.
T Consensus       153 -~~----~~~~~lalv~l~iil~~~-----~----~~kg~~~~~~iLigIvvG~ila~~lG~~d~~-~v~-----~a~~~  212 (428)
T PRK10720        153 -PD----SKTIIISMVTLAVTVLGS-----V----LFRGFLAIIPILIGVLVGYALSFAMGMVDTT-PII-----EAHWF  212 (428)
T ss_pred             -cc----hHHHHHHHHHHHHHHHHH-----H----HhccHHHHhHHHHHHHHHHHHHHHhcCCCHH-Hhh-----cCccc
Confidence             01    112334444444333211     1    123344556688999998888866542 111 110     01111


Q ss_pred             CCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhhhhHHHHhhc--ccccCCCCCCccchhHHHHHHhhhhhccCC
Q 005100          274 PGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQ--KEFNLKKPPSYHYDLLLLGFLTILCGLIGI  351 (714)
Q Consensus       274 p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~DhnIss~iaq~--ke~kLkKgsgyH~DLlllGi~t~i~gllGL  351 (714)
                      .  ...|.    ..++.+..+. ++.|..+   ..++|+ +.+..+..  -+.+..|....+-+++..|+.|+++|++|-
T Consensus       213 ~--lP~~~----~P~fd~~~il-~l~~~~l---v~~~Es-iG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~  281 (428)
T PRK10720        213 A--LPTFY----TPRFEWFAIL-TILPAAL---VVIAEH-VGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGS  281 (428)
T ss_pred             c--CCCCC----CCcCcHHHHH-HHHHHHH---HHHHHH-HHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCC
Confidence            0  00011    0112222222 3333332   334555 32222211  112232345778999999999999999998


Q ss_pred             CCC
Q 005100          352 PPS  354 (714)
Q Consensus       352 Pw~  354 (714)
                      ++.
T Consensus       282 ~p~  284 (428)
T PRK10720        282 TPN  284 (428)
T ss_pred             CCc
Confidence            875


No 14 
>PF00860 Xan_ur_permease:  Permease family;  InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include:  Xanthine permease PbuX, involved in cellualar xanthine transport []  Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease []  Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C []   These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=97.67  E-value=0.0016  Score=72.04  Aligned_cols=271  Identities=17%  Similarity=0.231  Sum_probs=130.4

Q ss_pred             HHHHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhc-cccccc
Q 005100           41 TYIFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDR-KDLGEK  119 (714)
Q Consensus        41 ~fifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~-~~lg~~  119 (714)
                      +.++-..+++.+-.+..++...+-..=+.-++++++++-+++++..|-|+-++=..+-..+.   .+..+... ...  .
T Consensus        12 l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~---~~~~~~g~~~~~--~   86 (389)
T PF00860_consen   12 LAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF---AFMIVIGMAESG--G   86 (389)
T ss_dssp             HHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH---HHHGGG-----H--H
T ss_pred             HHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh---hhhcccccccch--h
Confidence            33444444444444444332112224467889999999999999888888776433333332   22222221 000  0


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhccc-chhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCcccc
Q 005100          120 LFLAWTGWVCAWTALLLFLLSILGAC-SIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSWRF  198 (714)
Q Consensus       120 ~fL~~~~WVgiWtav~l~llai~nas-~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~~~  198 (714)
                      .=++-..=..++.+++.++++.++.- .+.|.++.-.-....++|++-...-+++.+...-..   .+.  ..+   ...
T Consensus        87 ~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~---~~~--~~~---~~~  158 (389)
T PF00860_consen   87 YGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN---PDG--LLV---GDG  158 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS------BTT---B------H
T ss_pred             hchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc---ccc--ccc---ccc
Confidence            11112223568888899999999985 677888888888899999999999998877543211   010  000   011


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhcccccc-ccCCCCCcccCCCCCCCCCCC
Q 005100          199 GNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVN-NVPRGIPRRLFSPNPWSPGAY  277 (714)
Q Consensus       199 ~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~-~vP~g~~~rl~~p~~~~p~~~  277 (714)
                      .+...    ++.++...+.+...         .|++..-|++.+++++-+.+++..+. +.+..+     ...||     
T Consensus       159 ~~~~~----~~~~~~~~~~~~~~---------~~~~~~~~ailigi~~g~i~~~~~g~~~~~~~~-----~~~~~-----  215 (389)
T PF00860_consen  159 KNLGL----AVLTLLFILLLSLF---------LKGFLRKGAILIGIIAGWIVAAILGVVDFSPSV-----SSAPW-----  215 (389)
T ss_dssp             HHHHH----HHHHHHHHHHHHHS---------SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSH-H-----HHS-S-----
T ss_pred             ccccc----ccccchhhhhhhhh---------hhhhcccccchhhhhhhhhhhhcccccccCccc-----ccccc-----
Confidence            11122    22222222222211         34555678999999988888765531 111100     01122     


Q ss_pred             CCcEEeccC--CCCChhHHHHhhhHHHHHHHHHhhhh----hhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhccCC
Q 005100          278 SNWTIVKEM--LDVPPLYIVGAFIPATMIAVLYYFDH----SVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLIGI  351 (714)
Q Consensus       278 r~W~V~~~~--~~vP~~~if~A~iPAlll~iL~F~Dh----nIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gllGL  351 (714)
                         +-.+..  +..|. .-..++++.+.+++.-++|+    .-.+.+++++.   ++....+--++.-|+.+.++|++|-
T Consensus       216 ---~~~p~~~~~g~p~-f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~---~~~~~~~r~l~~dg~~~~l~gl~G~  288 (389)
T PF00860_consen  216 ---FSLPSPFPFGWPS-FDPGAILTFLIFALVAMFESIGTIVAVARIAGKDD---PRPPRIRRGLLADGLGTILAGLFGT  288 (389)
T ss_dssp             ---S---------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-T---CCCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred             ---ccccccccccccc-ccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCC---ccchhhcccceeeeeeeeechhhcC
Confidence               111100  11121 11234444445555555654    22333333332   2267788889999999999999999


Q ss_pred             CCC
Q 005100          352 PPS  354 (714)
Q Consensus       352 Pw~  354 (714)
                      .+.
T Consensus       289 ~~~  291 (389)
T PF00860_consen  289 SPT  291 (389)
T ss_dssp             --E
T ss_pred             CCC
Confidence            764


No 15 
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=97.24  E-value=0.014  Score=66.32  Aligned_cols=269  Identities=19%  Similarity=0.192  Sum_probs=165.6

Q ss_pred             hHHHHHhhhhhHHHHhhchhhh-cCCCcchHHHHHhhhHhHHHHHHhcC----cceeeeecCchhHHHHHHHHHHhhhcc
Q 005100           40 TTYIFFASAIPVISFGEQLERN-TNGALTAVQTLASTALCGIIHSIVGG----QPLLILGVAEPTVLMYTFMFNFAKDRK  114 (714)
Q Consensus        40 t~fifFA~llPaIAFG~ll~~~-T~g~~gv~E~LlStai~Giifslf~G----QPL~IlGvTGP~~if~~~ly~f~~~~~  114 (714)
                      .+.||-+.+++.+.-|..++-. ++-.+=++-.|++++++-+++++-.+    |=..++|++--   |...+-...++.+
T Consensus        26 ~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFa---fi~p~i~~~~~~g  102 (451)
T COG2233          26 LLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFA---FVAPMIAIGGTTG  102 (451)
T ss_pred             HHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHH---HHHHHHHHHhccC
Confidence            6789999999988888776543 23334455678999999999999444    66678887653   3444444444432


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHhccc-chhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCC
Q 005100          115 DLGEKLFLAWTGWVCAWTALLLFLLSILGAC-SIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQ  193 (714)
Q Consensus       115 ~lg~~~fL~~~~WVgiWtav~l~llai~nas-~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~  193 (714)
                      + +    ++ ....++-++.++.++...=.. .+.|.||-..--..-++|++-.+.-|++.+.......    .+.+.. 
T Consensus       103 ~-~----~~-~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~----~~~~~~-  171 (451)
T COG2233         103 D-G----IA-ALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAA----GNPDFG-  171 (451)
T ss_pred             C-c----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCC----CCcccC-
Confidence            0 1    11 123455555555544444444 7788888888888889999999999998887644210    111000 


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccccccCCCCCcccCCCCCCC
Q 005100          194 PSWRFGNGMFALVLSFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPVNNVPRGIPRRLFSPNPWS  273 (714)
Q Consensus       194 ~~~~~~~~llsliL~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~~~vP~g~~~rl~~p~~~~  273 (714)
                             ..-.+.+++.|+.+.+...     +|+    |.+++-+++.+++++-+.++++.+ .+.            ++
T Consensus       172 -------~~~~l~la~~tl~~il~~~-----~f~----~g~~~~i~ILiGlv~G~~la~~~G-~vd------------f~  222 (451)
T COG2233         172 -------SLENLGLALVTLLIILLIN-----RFG----KGFLRRIPILIGLVVGYLLALFMG-MVD------------FS  222 (451)
T ss_pred             -------chhHHHHHHHHHHHHHHHH-----HHh----hhHHHHHHHHHHHHHHHHHHHHhC-CcC------------cc
Confidence                   1223455666666555442     333    445556788888888887776665 121            11


Q ss_pred             CCCCCCcEEeccCCCCChhHHHHhhhHHHHHHHHHhhhh----hhHHHHhhcccccCCCCCCccchhHHHHHHhhhhhcc
Q 005100          274 PGAYSNWTIVKEMLDVPPLYIVGAFIPATMIAVLYYFDH----SVASQLAQQKEFNLKKPPSYHYDLLLLGFLTILCGLI  349 (714)
Q Consensus       274 p~~~r~W~V~~~~~~vP~~~if~A~iPAlll~iL~F~Dh----nIss~iaq~ke~kLkKgsgyH~DLlllGi~t~i~gll  349 (714)
                      +-....|+-+++....-...-+.|+++.+.+++.-..||    -.++.+.+|   ++.|..++|--++-=|+.++++|++
T Consensus       223 ~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~---~~~~~~~l~rg~~aDGlat~iag~f  299 (451)
T COG2233         223 GVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITATGEITGR---DLDGKPRLRRGLLADGLATLIAGLF  299 (451)
T ss_pred             ccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCC---cCccCcccccceeeccHHHHHHHhc
Confidence            112234554332221111223467777777777777776    234444444   4566788999999999999999999


Q ss_pred             CCCCC
Q 005100          350 GIPPS  354 (714)
Q Consensus       350 GLPw~  354 (714)
                      |-||.
T Consensus       300 g~~p~  304 (451)
T COG2233         300 GGFPN  304 (451)
T ss_pred             CCCCC
Confidence            99984


No 16 
>PF13792 Sulfate_tra_GLY:  Sulfate transporter N-terminal domain with GLY motif
Probab=84.54  E-value=0.67  Score=41.39  Aligned_cols=51  Identities=18%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             hhhh-HHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHH
Q 005100           47 SAIP-VISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMY  103 (714)
Q Consensus        47 ~llP-aIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~  103 (714)
                      ..+| +++|+.+-+      +...-.|.++.++++++++||+.|.+++|+|+.+.++.
T Consensus        29 ~~iPq~~a~A~lAg------~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~   80 (84)
T PF13792_consen   29 VAIPQGMAYALLAG------VPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI   80 (84)
T ss_pred             HHHHHHHHHHHHcC------CCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence            3578 999996544      33456689999999999999999999999998876653


No 17 
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=65.55  E-value=2.8e+02  Score=32.70  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=39.8

Q ss_pred             ceeeeechhhHHHHHHHHHHHhh--ccccCcccchhhhhHHHHh----hcccCCCchH
Q 005100          460 VEVKEQRLSNLLQALMVGGCVAA--MPLLKKIPTSVLWGYFAFM----AIENLPGNQF  511 (714)
Q Consensus       460 v~V~EQRvS~ll~~lLig~s~~~--~PvL~~IP~aVL~GvFlYM----Gi~SL~GnQf  511 (714)
                      .+|---|+=.+....||..+++-  .-++..||.++..|++..+    +--+|+.-||
T Consensus       343 TKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf  400 (510)
T KOG1292|consen  343 TKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF  400 (510)
T ss_pred             eeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            36667788888889999999873  5689999999999987643    5555665565


No 18 
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
Probab=64.70  E-value=2.8e+02  Score=32.29  Aligned_cols=90  Identities=22%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             HHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHH--HHHHHHHHHHHHHHhcccch
Q 005100           70 QTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGW--VCAWTALLLFLLSILGACSI  147 (714)
Q Consensus        70 E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~W--VgiWtav~l~llai~nas~l  147 (714)
                      -+.++++++-++.++++--|.-+-=.-|-   -..+-|..+...+       ++|+.=  ..+|++++-++++.++.=.+
T Consensus        57 AT~l~a~~gs~~mgl~An~P~alapgmgl---nAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~  126 (436)
T COG2252          57 ATCLAAAIGSIAMGLYANLPIALAPGMGL---NAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREW  126 (436)
T ss_pred             HHHHHHHHHHHHHHHHHcCchhhcchhhH---HHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            56667778888999999999887654443   3445566776653       444432  56788999999999998554


Q ss_pred             -hhhcccch----hhHHHHHHHHHHHH
Q 005100          148 -INRFTRIA----GELFGLLIAMLFMQ  169 (714)
Q Consensus       148 -i~~~TRft----eEiF~~lIsviFi~  169 (714)
                       +|.+.+--    .-.-|++|++|-..
T Consensus       127 ii~~IP~~lk~ai~aGIGlFia~IgL~  153 (436)
T COG2252         127 IINAIPRSLKLAIGAGIGLFIALIGLK  153 (436)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence             56665432    33445666665555


No 19 
>PF11840 DUF3360:  Protein of unknown function (DUF3360);  InterPro: IPR021794  This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length. 
Probab=56.29  E-value=2.8e+02  Score=31.92  Aligned_cols=217  Identities=18%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             HHHHhhchhhhcCCCcch--HHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHH
Q 005100           51 VISFGEQLERNTNGALTA--VQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWV  128 (714)
Q Consensus        51 aIAFG~ll~~~T~g~~gv--~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WV  128 (714)
                      +-+|++.++-.-+-.+-.  .|.++++.+-=+++|=|=-----.-|.-||.....-.+-   +.-+   .+  |+    .
T Consensus        80 ~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAGthgPmIpLIp~iv---aaGg---HP--La----l  147 (492)
T PF11840_consen   80 AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAGTHGPMIPLIPLIV---AAGG---HP--LA----L  147 (492)
T ss_pred             HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccCCCCCcchhhHHHH---HcCC---Cc--HH----H
Confidence            446666654322222221  378888776666666665555667788999776555443   3221   12  33    5


Q ss_pred             HHHHHHHHHHHHHhcccchhhhcc-cchhhHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCcccchhHHHHHHH
Q 005100          129 CAWTALLLFLLSILGACSIINRFT-RIAGELFGLLIAMLFMQQAIRGVVEEFGIPERENPNQMSLQPSWRFGNGMFALVL  207 (714)
Q Consensus       129 giWtav~l~llai~nas~li~~~T-RfteEiF~~lIsviFi~eaik~lv~~F~~p~~~~~~~~~~~~~~~~~~~llsliL  207 (714)
                      |+-.++|-++++.+.+.+.+-..| .=++-.--.+..++=....|+++..=+.                ....+..+.++
T Consensus       148 gilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~----------------~~~~~~i~fvv  211 (492)
T PF11840_consen  148 GILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWAN----------------GFDMGYIAFVV  211 (492)
T ss_pred             HHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHh----------------ccCccHHHHHH
Confidence            677778889999998866544444 2223222222333333444555433211                01123344444


Q ss_pred             HHHHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccc----cccCCCCCcccCCCCCCCCCCCCCcEEe
Q 005100          208 SFGLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPV----NNVPRGIPRRLFSPNPWSPGAYSNWTIV  283 (714)
Q Consensus       208 ~~gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~----~~vP~g~~~rl~~p~~~~p~~~r~W~V~  283 (714)
                      -+.|..+.-++.+.+     ++|+       ++|++-++--.++|..+    ..-+.|.|  ..+|--|= ++..||-. 
T Consensus       212 i~~tiv~Ya~L~k~~-----KrWL-------aIPl~~~~a~~~a~~lGa~f~f~t~pglp--~lnP~YWW-ge~tGw~L-  275 (492)
T PF11840_consen  212 IIVTIVLYAYLAKIE-----KRWL-------AIPLCSILAGVLAFALGAPFEFTTEPGLP--NLNPMYWW-GEETGWQL-  275 (492)
T ss_pred             HHHHHHHHHHHHHhc-----cchh-------hhhHHHHHHHHHHHHcCCCceeecCCCCC--CCCCcccc-cCCccccc-
Confidence            444444433344443     2443       56676665555554442    12223332  12333331 22566752 


Q ss_pred             ccCCCCChhHHHHhhhH-HHHHHHHH---hhhhhhH
Q 005100          284 KEMLDVPPLYIVGAFIP-ATMIAVLY---YFDHSVA  315 (714)
Q Consensus       284 ~~~~~vP~~~if~A~iP-Alll~iL~---F~DhnIs  315 (714)
                          .+|...-|.|..| |++...+.   |+-|+|=
T Consensus       276 ----glP~~~hfiav~PFAiLAVaMWSpDflghrvF  307 (492)
T PF11840_consen  276 ----GLPTLEHFIAVLPFAILAVAMWSPDFLGHRVF  307 (492)
T ss_pred             ----CCCcHHHHHHhccHHHHHHHHhCchHHHHHHH
Confidence                4677666766666 66655555   3445554


No 20 
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.96  E-value=21  Score=40.09  Aligned_cols=65  Identities=29%  Similarity=0.411  Sum_probs=42.0

Q ss_pred             ccchhhHHHHHHHHhHhhheeeechhHHhhHHHHHHHH------HHHhhhh-----cCcccChhhhhccChhhhccccc
Q 005100          542 FKSIAAFTLFQTVYLLLCFGITWIPIAGVLFPLLIMLL------VPVRQYL-----LPKFFKAVHLQDLDAAEYEEAPA  609 (714)
Q Consensus       542 ~~~IhlFT~iQl~~l~~~f~vt~~~~aai~FPl~i~lL------IPiR~~l-----LPr~F~~~eL~~LD~~e~ee~~~  609 (714)
                      -..|.++| .|++.++..|.=.|.|-++++  .+|++|      -|||+.-     +-|.|++---+.|..+||||-..
T Consensus       252 S~~ilmWt-Lqli~lvl~Yfsvq~p~~a~A--~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQae  327 (452)
T KOG3817|consen  252 SQTILMWT-LQLIGLVLAYFSVQHPSAAIA--AIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAE  327 (452)
T ss_pred             hhhHHHHH-HHHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHH
Confidence            35677776 588888777766677766553  333333      3666542     34557777778888888888443


No 21 
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.58  E-value=1.5e+02  Score=34.99  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             hHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH-------------------HH
Q 005100           76 ALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTAL-------------------LL  136 (714)
Q Consensus        76 ai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav-------------------~l  136 (714)
                      -.+|+++|-=++-||+.--+.|+.    +.+|+-+.+...    .|.   .=+-.|..+                   ..
T Consensus       266 ~vsgl~yspDC~v~l~l~ntkg~~----~vl~n~aVr~tl----l~~---~~~~~~~~~Ll~q~~~~sps~v~rlSf~~i  334 (636)
T KOG0828|consen  266 EVSGLVYSPDCFVPLTLNNTKGNV----EVLYNKAVRYTL----LYI---FIVLSQIFLLLRQMRINSPSHVQRLSFLTI  334 (636)
T ss_pred             cccCcccCCCcCcceeeeccccch----hhhhhhhHHHHH----HHH---HHHHHHHHHHHHHHhhcCchhhhhhhhhhH
Confidence            357999999999999999999993    345665555432    111   111111111                   11


Q ss_pred             HHHHHhcccchhhhccc--chhhHHHHHHHHHHH
Q 005100          137 FLLSILGACSIINRFTR--IAGELFGLLIAMLFM  168 (714)
Q Consensus       137 ~llai~nas~li~~~TR--fteEiF~~lIsviFi  168 (714)
                      -..|..++.--+.|+|-  ..||+|-.|++..|.
T Consensus       335 ~mqa~mD~~Lall~lta~~vve~lylpfvtaAF~  368 (636)
T KOG0828|consen  335 AMQAGMDAYLALLFLTANAVVESLYLPFVTAAFF  368 (636)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            12344566655677775  778888777776554


No 22 
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=27.43  E-value=1.8e+02  Score=33.22  Aligned_cols=102  Identities=13%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             CcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHhcc
Q 005100           65 ALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFLAWTGWVCAWTALLLFLLSILGA  144 (714)
Q Consensus        65 ~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgiWtav~l~llai~na  144 (714)
                      ..-+.+.+.++.++.++-+.|||-+..+-+.|.          .+|.+.+  +.+| ..=|.|.+++++++.++++.|.+
T Consensus       253 ~~p~~~~~~~tGl~sll~ApfGg~~~nlaaita----------Aic~G~~--ah~d-~~rR~~a~i~~Gv~yll~glfag  319 (395)
T TIGR00843       253 NAPAKPIIAAAGLAALFAAFAGGISIGIAAITA----------AICMGKD--AHED-KDKRWIAAAAAGIFYLLAGLFAG  319 (395)
T ss_pred             CCCchHHHHHHHHHHHHHhccCCchhhhhHHhH----------HHhcCcc--cccC-cCccchHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999988766543          3445442  2223 45566789999999999999977


Q ss_pred             cchhhhcccchhhHHHHHHHHHHHHHHHHHHhHhcC
Q 005100          145 CSIINRFTRIAGELFGLLIAMLFMQQAIRGVVEEFG  180 (714)
Q Consensus       145 s~li~~~TRfteEiF~~lIsviFi~eaik~lv~~F~  180 (714)
                       .+...+.-+..|+-..+-.+-.+--=...+..-|+
T Consensus       320 -~i~~l~~~~P~~li~~laGlAll~~~~~~l~~a~~  354 (395)
T TIGR00843       320 -AITALFAALPKELIAALAGLALLGAIAGNIKIALH  354 (395)
T ss_pred             -HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             67777777888887777666544333334444454


No 23 
>PF12075 KN_motif:  KN motif;  InterPro: IPR021939  This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors []. 
Probab=26.31  E-value=28  Score=27.30  Aligned_cols=18  Identities=28%  Similarity=0.672  Sum_probs=12.4

Q ss_pred             cCCCCCCccchhHHHHHH
Q 005100          325 NLKKPPSYHYDLLLLGFL  342 (714)
Q Consensus       325 kLkKgsgyH~DLlllGi~  342 (714)
                      -++-|-|||+||=-|-.+
T Consensus         3 sv~tPYGyhiDLDFvkyv   20 (39)
T PF12075_consen    3 SVETPYGYHIDLDFVKYV   20 (39)
T ss_pred             cccCCcceeecchHHHHH
Confidence            356689999997554443


No 24 
>PF13172 PepSY_TM_1:  PepSY-associated TM helix
Probab=24.97  E-value=92  Score=23.05  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhcc
Q 005100          121 FLAWTGWVCAWTALLLFLLSILGA  144 (714)
Q Consensus       121 fL~~~~WVgiWtav~l~llai~na  144 (714)
                      +..+-.|+|+++++++++++++++
T Consensus         5 ~~~~H~~~g~~~~~~ll~~~lTG~   28 (34)
T PF13172_consen    5 WRKIHRWLGLIAAIFLLLLALTGA   28 (34)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999886


No 25 
>PF10337 DUF2422:  Protein of unknown function (DUF2422);  InterPro: IPR018823  This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus. 
Probab=22.37  E-value=2.7e+02  Score=31.97  Aligned_cols=17  Identities=29%  Similarity=0.907  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 005100          122 LAWTGWVCAWTALLLFL  138 (714)
Q Consensus       122 L~~~~WVgiWtav~l~l  138 (714)
                      .-+++|+..|.++++++
T Consensus        18 ~~~k~~i~~~i~~~l~~   34 (459)
T PF10337_consen   18 IMFKCWIAPWIALILCQ   34 (459)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34789999999888773


No 26 
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=21.28  E-value=5.8e+02  Score=30.09  Aligned_cols=92  Identities=21%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             HHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHHHHHHHhhhccccccchhh
Q 005100           43 IFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYTFMFNFAKDRKDLGEKLFL  122 (714)
Q Consensus        43 ifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL  122 (714)
                      +.+.+++=.++-+.-.+++++..+..++-+.+++++.++-++|||=|-+  |..+-+.     +..-+-.+         
T Consensus       268 ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~--~s~srs~-----~~~~~G~~---------  331 (563)
T TIGR00815       268 IAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPAT--GSLSRTA-----VNAKAGCR---------  331 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCC--CcchHHH-----HHHhcCCc---------
Confidence            4444444444444444556677788899999999999999999998864  2222211     11112121         


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccchhhhccc
Q 005100          123 AWTGWVCAWTALLLFLLSILGACSIINRFTR  153 (714)
Q Consensus       123 ~~~~WVgiWtav~l~llai~nas~li~~~TR  153 (714)
                        .-|.++++++++++...+. ..++.|+.+
T Consensus       332 --t~~a~i~~~~~~l~~~l~~-~~~l~~iP~  359 (563)
T TIGR00815       332 --TQLSGVVTAIVVLLVLLVL-TPLFYYIPQ  359 (563)
T ss_pred             --chHHHHHHHHHHHHHHHHH-HHHHHhChH
Confidence              1368889888888777764 467788875


Done!