Query 005100
Match_columns 714
No_of_seqs 180 out of 577
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 15:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005100.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005100hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 61.2 3.4 0.00025 29.9 3.4 25 120-144 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 60.1 3.9 0.00028 29.4 3.5 25 120-144 18-42 (42)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 27.2 9.5 0.0007 31.6 1.3 26 548-577 1-26 (158)
4 d3b45a1 f.51.1.1 (A:91-270) Gl 23.9 86 0.0063 27.1 7.3 59 44-104 61-119 (180)
5 d1h2sb_ f.17.4.1 (B:) Sensory 10.0 1.5E+02 0.011 21.5 4.0 39 40-78 2-44 (60)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 7.4 2.8E+02 0.021 27.4 6.6 46 210-255 385-430 (472)
7 d1rh1a2 f.1.1.1 (A:313-511) Co 6.1 88 0.0064 28.8 1.5 37 60-96 123-166 (199)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 5.7 1.4E+02 0.01 19.2 1.8 11 158-168 9-19 (30)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.3 2.3E+02 0.017 24.4 3.8 56 43-100 62-117 (189)
10 d2i5nh2 f.23.10.1 (H:1-36) Pho 3.8 2E+02 0.014 19.0 1.6 17 122-138 15-32 (36)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=61.16 E-value=3.4 Score=29.89 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcc
Q 005100 120 LFLAWTGWVCAWTALLLFLLSILGA 144 (714)
Q Consensus 120 ~fL~~~~WVgiWtav~l~llai~na 144 (714)
-|+.|.-|+++-..++++++|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=60.08 E-value=3.9 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcc
Q 005100 120 LFLAWTGWVCAWTALLLFLLSILGA 144 (714)
Q Consensus 120 ~fL~~~~WVgiWtav~l~llai~na 144 (714)
-|+.|.-|+++=..++++++|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=27.17 E-value=9.5 Score=31.60 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=20.8
Q ss_pred HHHHHHHHhHhhheeeechhHHhhHHHHHH
Q 005100 548 FTLFQTVYLLLCFGITWIPIAGVLFPLLIM 577 (714)
Q Consensus 548 FT~iQl~~l~~~f~vt~~~~aai~FPl~i~ 577 (714)
||++|++..++..||+ ++|++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999998888887776 7788886543
No 4
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=23.89 E-value=86 Score=27.05 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhHHHHH
Q 005100 44 FFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVLMYT 104 (714)
Q Consensus 44 fFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~if~~ 104 (714)
.+.|+..-..||..++++-+..-=..=.+++..++|++..++... ...|.+|-+...-.
T Consensus 61 l~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~ 119 (180)
T d3b45a1 61 ILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMG 119 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHH
Confidence 345666777799888886553222223345666667777777654 46788887544433
No 5
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=9.95 E-value=1.5e+02 Score=21.53 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=25.7
Q ss_pred hHHHHHhh---hhhHHHHhhchh-hhcCCCcchHHHHHhhhHh
Q 005100 40 TTYIFFAS---AIPVISFGEQLE-RNTNGALTAVQTLASTALC 78 (714)
Q Consensus 40 t~fifFA~---llPaIAFG~ll~-~~T~g~~gv~E~LlStai~ 78 (714)
.+|||... +.-+|++|+... ..|+..-.++|.-+|..++
T Consensus 2 avfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsailg 44 (60)
T d1h2sb_ 2 AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILG 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cEEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHHHHH
Confidence 35777644 456999999854 4566666677776665544
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.43 E-value=2.8e+02 Score=27.38 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=27.0
Q ss_pred HHHHHHHHhcccccccccCccccchhccchhHHHHHHHhhhccccc
Q 005100 210 GLLYTGLRSRKARSWRYGSGSLRGFIADYGVPLMVLVWTAVSYIPV 255 (714)
Q Consensus 210 gt~~~a~~l~~~rss~y~~~~vR~~iaDygvpiaVl~~t~vsy~~~ 255 (714)
.-++.++..|..|.+-+..+..|+-.--+++.+++++...+.|.+.
T Consensus 385 ~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 385 IEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445556666655555545555665555666666666666667654
No 7
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.09 E-value=88 Score=28.84 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.2
Q ss_pred hhcCCCcch---HHHHH----hhhHhHHHHHHhcCcceeeeecC
Q 005100 60 RNTNGALTA---VQTLA----STALCGIIHSIVGGQPLLILGVA 96 (714)
Q Consensus 60 ~~T~g~~gv---~E~Ll----Stai~Giifslf~GQPL~IlGvT 96 (714)
-+|+++=-. +|+++ +|+++..+||+..|-|+.|+|..
T Consensus 123 ~eTgNWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~ 166 (199)
T d1rh1a2 123 YQTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLS 166 (199)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 367765444 68887 78889999999999999999986
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.74 E-value=1.4e+02 Score=19.18 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 005100 158 LFGLLIAMLFM 168 (714)
Q Consensus 158 iF~~lIsviFi 168 (714)
||+++|++.|+
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887665
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.25 E-value=2.3e+02 Score=24.41 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHhhhhhHHHHhhchhhhcCCCcchHHHHHhhhHhHHHHHHhcCcceeeeecCchhH
Q 005100 43 IFFASAIPVISFGEQLERNTNGALTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTV 100 (714)
Q Consensus 43 ifFA~llPaIAFG~ll~~~T~g~~gv~E~LlStai~Giifslf~GQPL~IlGvTGP~~ 100 (714)
=.+.|+..-+.||..+++.-+..--..=.+++..+++++++++.+++ ++|.+|-+-
T Consensus 62 Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~ 117 (189)
T d2nr9a1 62 HILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVY 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHH
Confidence 34567777888888888765543333344567888888888887766 579988744
No 10
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.81 E-value=2e+02 Score=18.98 Aligned_cols=17 Identities=47% Similarity=1.298 Sum_probs=12.0
Q ss_pred hhHH-HHHHHHHHHHHHH
Q 005100 122 LAWT-GWVCAWTALLLFL 138 (714)
Q Consensus 122 L~~~-~WVgiWtav~l~l 138 (714)
|-|+ -|.-+|+.+++.+
T Consensus 15 lvwyaqwlviwtvvllyl 32 (36)
T d2i5nh2 15 LVWYAQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 4454 4899999887754
Done!