Query 005101
Match_columns 714
No_of_seqs 215 out of 507
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.8 1.3E-19 4.6E-24 197.9 8.5 217 318-545 253-480 (482)
2 4a18_H RPL35A; ribosome, eukar 68.9 3.4 0.00012 38.0 3.5 66 478-543 30-109 (113)
3 1sqr_A 50S ribosomal protein L 64.2 3.2 0.00011 37.1 2.3 54 480-533 19-76 (95)
4 3j21_c 50S ribosomal protein L 60.8 6.4 0.00022 34.7 3.5 56 479-534 18-77 (87)
5 3iz5_j 60S ribosomal protein L 59.0 6.9 0.00024 35.9 3.5 55 480-534 29-95 (111)
6 3izc_j 60S ribosomal protein R 54.6 6.9 0.00023 35.7 2.7 54 481-534 26-91 (107)
7 3izq_1 HBS1P, elongation facto 52.5 52 0.0018 37.2 10.1 81 374-460 515-610 (611)
8 3sjy_A Translation initiation 42.5 2.4E+02 0.0083 29.5 12.8 65 375-457 336-402 (403)
9 1f60_A Elongation factor EEF1A 37.2 4.2E+02 0.014 28.4 15.8 131 317-462 296-442 (458)
10 3mca_A HBS1, elongation factor 36.3 56 0.0019 36.7 7.0 75 375-459 508-591 (592)
11 1jny_A EF-1-alpha, elongation 33.0 4.7E+02 0.016 27.7 14.2 134 317-463 285-431 (435)
12 3p26_A Elongation factor 1 alp 32.7 2.7E+02 0.0093 30.0 11.5 133 315-462 328-478 (483)
13 1s0u_A EIF-2-gamma, translatio 30.6 3.8E+02 0.013 28.0 12.0 65 376-457 343-407 (408)
14 3e1y_E Eukaryotic peptide chai 22.5 4.6E+02 0.016 25.2 10.0 129 318-461 58-201 (204)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=1.3e-19 Score=197.85 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=150.7
Q ss_pred hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeee
Q 005101 318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP 397 (714)
Q Consensus 318 ~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgGLl~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwRRFqt~P 397 (714)
++.+.+|+.|.|.+.++..+-++ .+.-| ++.-.+- .-..-+.+++.--.. ++.+|++..++.|++|..+.....
T Consensus 253 v~~a~~G~~v~~~l~~~~~~~i~---~Gdvl-~~~~~~~-~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v 326 (482)
T 1wb1_A 253 VMEAKAGDRVGMAIQGVDAKQIY---RGXIL-TSKDTKL-QTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVA 326 (482)
T ss_dssp BCCCCSSCCCCEECSSCCSSCCC---SSCBC-CCTTCCC-CCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEE
T ss_pred eeEecCCCEEEEEecCCCHhhcc---ccceE-ecCCCCC-ceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEE
Confidence 45577899999988876432211 11111 0110000 011122222222222 457999999999999999987765
Q ss_pred eeee---cCCCccceeeeecCC--CceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEeecccCceeEEEeEEEe
Q 005101 398 VYAI---EDRSGRHRMLKYTPE--HMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLV 472 (714)
Q Consensus 398 IyS~---~d~n~R~K~lKYtpe--h~~c~ATfyGPit~p~tpvlafq~~s~~~~~frI~ATG~vl~~D~sr~IvKKlkLt 472 (714)
..-. -|.++.+..-++... ...|...+-.|+++.+-+-++++...+.....|.+|.|.|+++.+ +++++|.
T Consensus 327 ~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~----~~~l~v~ 402 (482)
T 1wb1_A 327 VPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP----IKDLNIK 402 (482)
T ss_dssp EEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC----GGGSCCC
T ss_pred EEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEEEEeccc----chhceee
Confidence 4432 222333332334433 346777888999987666566666221123468999999999877 4666665
Q ss_pred eeeeE-----EeecceEEeccCCChhhhcccccccccccccCC-CCcccCCCCCCeeEEEEeccccccCCEEEEeccee
Q 005101 473 GYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGN-QPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 545 (714)
Q Consensus 473 G~P~K-----I~K~TAfIr~MF~s~lEV~~Fkgkk~L~tk~G~-rG~IKeslGthG~FKAtFedkI~~sDiVfLrlwkr 545 (714)
..+.| ++++||+||+||++..+|+||.|.+ +.+.+|. +|+|++|.|++|+|||+|+++|.+||+|||++|+|
T Consensus 403 k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~-v~~~~g~~~G~I~~~fg~~G~~~~~f~~~~~~~d~v~~~~~~~ 480 (482)
T 1wb1_A 403 KEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEE-ISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRR 480 (482)
T ss_dssp CCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCC-CEETTTCCCBCCCCCBTTTTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred ehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcE-EEEcCCceEEEEeccCCCCceEEEEecCCCCCCCeeeeehhhc
Confidence 55555 7889999999999999999999987 7789999 99999999999999999999999999999999987
No 2
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=68.95 E-value=3.4 Score=38.01 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=49.2
Q ss_pred EeecceEEecc-CCChhhhcccccccccc---cc--cCC-----CCcccCCCCCCeeEEEEeccccc---cCCEEEEecc
Q 005101 478 IFKKTALIKDM-FTSDLEVAQCEGKEAAK---EE--IGN-----QPKRKGGQPREGIARCTFEDRIL---MSDIVFMRGW 543 (714)
Q Consensus 478 I~K~TAfIr~M-F~s~lEV~~Fkgkk~L~---tk--~G~-----rG~IKeslGthG~FKAtFedkI~---~sDiVfLrlw 543 (714)
-+-|||.|+== =++.+|..+|.|++... .+ .|. -|.|..+.|..|.+||.|...|- +++.|.+-||
T Consensus 30 Q~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 109 (113)
T 4a18_H 30 QNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLY 109 (113)
T ss_dssp EEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEEESSCCCGGGGGSEEEEECC
T ss_pred CCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCCCCeEEEEeCCCCChHHcCCeEEEEEe
Confidence 45677777743 57889999999976442 21 342 49999999999999999998874 4566766665
No 3
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=64.22 E-value=3.2 Score=37.14 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=41.5
Q ss_pred ecceEEec-cCCChhhhcccccccccc---cccCCCCcccCCCCCCeeEEEEeccccc
Q 005101 480 KKTALIKD-MFTSDLEVAQCEGKEAAK---EEIGNQPKRKGGQPREGIARCTFEDRIL 533 (714)
Q Consensus 480 K~TAfIr~-MF~s~lEV~~Fkgkk~L~---tk~G~rG~IKeslGthG~FKAtFedkI~ 533 (714)
-+||.||= =-++.+|.++|.||+... ++.=+-|.|..|-|..|.+||.|...|-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVrAkF~~nLP 76 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLP 76 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCS
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEEEEeCCCCC
Confidence 35566653 368899999999977542 3333689999999999999999987764
No 4
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=60.76 E-value=6.4 Score=34.73 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=41.7
Q ss_pred eecceEEecc-CCChhhhcccccccccc-cccC--CCCcccCCCCCCeeEEEEecccccc
Q 005101 479 FKKTALIKDM-FTSDLEVAQCEGKEAAK-EEIG--NQPKRKGGQPREGIARCTFEDRILM 534 (714)
Q Consensus 479 ~K~TAfIr~M-F~s~lEV~~Fkgkk~L~-tk~G--~rG~IKeslGthG~FKAtFedkI~~ 534 (714)
+-+||.||== =++.+|..+|-|++... ++.| +-|.|..|.|..|.+||.|...+-.
T Consensus 18 ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvVrAkF~~nLP~ 77 (87)
T 3j21_c 18 HNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPG 77 (87)
T ss_dssp CTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCEEEEESSCCCS
T ss_pred CCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 3456666633 47889999999976443 3334 3799999999999999999877643
No 5
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=58.99 E-value=6.9 Score=35.91 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=39.4
Q ss_pred ecceEEecc-CCChhhhcccccccccc---c---ccC--C---CCcccCCCCCCeeEEEEecccccc
Q 005101 480 KKTALIKDM-FTSDLEVAQCEGKEAAK---E---EIG--N---QPKRKGGQPREGIARCTFEDRILM 534 (714)
Q Consensus 480 K~TAfIr~M-F~s~lEV~~Fkgkk~L~---t---k~G--~---rG~IKeslGthG~FKAtFedkI~~ 534 (714)
-|||.||== =++.+|..+|.|++... . ..| . -|.|..|.|..|.+||.|...|-.
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~ 95 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPP 95 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCST
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCCh
Confidence 345555532 47889999999976432 1 122 2 499999999999999999987743
No 6
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=54.62 E-value=6.9 Score=35.73 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=38.7
Q ss_pred cceEEecc-CCChhhhcccccccccc---cc---cC-----CCCcccCCCCCCeeEEEEecccccc
Q 005101 481 KTALIKDM-FTSDLEVAQCEGKEAAK---EE---IG-----NQPKRKGGQPREGIARCTFEDRILM 534 (714)
Q Consensus 481 ~TAfIr~M-F~s~lEV~~Fkgkk~L~---tk---~G-----~rG~IKeslGthG~FKAtFedkI~~ 534 (714)
+||.||== =++.+|..+|.|++... .+ .| +-|.|..+.|..|.+||.|...+-.
T Consensus 26 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~ 91 (107)
T 3izc_j 26 NVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPA 91 (107)
T ss_dssp CEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSCEEECCCSCCST
T ss_pred CeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 44555432 36789999999965432 11 13 2599999999999999999987743
No 7
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=52.49 E-value=52 Score=37.23 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=49.9
Q ss_pred cccccccCCcEEEEeeeeeeeeee--eeeecCCCccc--eeeeecCCCceEEEEEEe-----ecCCCC------ceEEEE
Q 005101 374 HKKVLKSRDPIIVSIGWRRFQTIP--VYAIEDRSGRH--RMLKYTPEHMHCLATFWG-----PLAPPQ------TGVVAV 438 (714)
Q Consensus 374 ~~kiLKSkDpLIfsiGwRRFqt~P--IyS~~d~n~R~--K~lKYtpeh~~c~ATfyG-----Pit~p~------tpvlaf 438 (714)
++.||+...+++++||-.+-...- |-+.-|.++-. .--++...+..+++.|-- ||++-+ +|=+++
T Consensus 515 ~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~l 594 (611)
T 3izq_1 515 MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVL 594 (611)
T ss_dssp CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEE
T ss_pred CCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEE
Confidence 467999999999999998765432 22322333211 112356667666666654 775543 344444
Q ss_pred EeccCCCCCeEEEEEEEeeccc
Q 005101 439 QNLSNNQASFRIAATAVVLEFN 460 (714)
Q Consensus 439 q~~s~~~~~frI~ATG~vl~~D 460 (714)
+.. -+.+|.|+|+.++
T Consensus 595 r~~------~~Tva~G~i~~v~ 610 (611)
T 3izq_1 595 RKD------GRTIAAGKISEIT 610 (611)
T ss_dssp ESS------SSEEEEEEEEEEC
T ss_pred EeC------CCEEEEEEEEEec
Confidence 432 1689999999875
No 8
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=42.51 E-value=2.4e+02 Score=29.48 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=45.1
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeecCCCccceeeeecCCCceEEEEEEeecCC-CCc-eEEEEEeccCCCCCeEEEE
Q 005101 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP-PQT-GVVAVQNLSNNQASFRIAA 452 (714)
Q Consensus 375 ~kiLKSkDpLIfsiGwRRFqt~PIyS~~d~n~R~K~lKYtpeh~~c~ATfyGPit~-p~t-pvlafq~~s~~~~~frI~A 452 (714)
..||+...++.|++|-.+-...-. +... + .+...+--|+.. .+. .|+..+.. ....||+|
T Consensus 336 ~~~l~~~~~~~~~~gt~~~~~~v~-~~~~--~------------~~~~~l~~p~~~~~g~~r~~i~r~~---~~~~r~~g 397 (403)
T 3sjy_A 336 VDPIRAKETLMLSVGSSTTLGIVT-SVKK--D------------EIEVELRRPVAVWSNNIRTVISRQI---AGRWRMIG 397 (403)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEE-EECS--S------------EEEEEEEEEEECCSSSCEEEEEEEE---TTEEEEEE
T ss_pred CCCCCCCCEEEEEECccEEEEEEE-EecC--c------------eEEEEeCCcEeeccCCEEEEEEEEe---CCcEEEEE
Confidence 679999999999999876655433 3321 1 344555567544 466 78887776 34789999
Q ss_pred EEEee
Q 005101 453 TAVVL 457 (714)
Q Consensus 453 TG~vl 457 (714)
+|.|.
T Consensus 398 ~g~i~ 402 (403)
T 3sjy_A 398 WGLVE 402 (403)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 9
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=37.17 E-value=4.2e+02 Score=28.43 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=74.8
Q ss_pred HhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeec---ccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeee
Q 005101 317 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGI---GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRF 393 (714)
Q Consensus 317 ~~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgGL---l~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwRRF 393 (714)
.++.+.||+.|.|.|.++... +-..-.+||.- .+....-=-.++.+-. ++.+|+...+.+|+||-.+-
T Consensus 296 ~~~~a~aG~~v~i~l~gi~~~-----~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~~~~~t~~~ 366 (458)
T 1f60_A 296 QLEQGVPGDNVGFNVKNVSVK-----EIRRGNVCGDAKNDPPKGCASFNATVIVLN----HPGQISAGYSPVLDCHTAHI 366 (458)
T ss_dssp ECSCBCTTCEEEEEESSCCTT-----TSCTTCEEEETTSSCCCCCSEEEEEEEECS----CSCCBCTTCCCEEEETTEEE
T ss_pred EEEEEcCCCEEEEEEcCCccc-----ccCceeEEecCCCCCCceeeEEEEEEEEeC----CCCCCCCCCEEEEEeccceE
Confidence 345688999999999887432 12234445432 1222222223333322 35699999999999998875
Q ss_pred eee--eeeeecCCCcccee---eeecCCCceEEE--EEEeecCC------CCceEEEEEeccCCCCCeEEEEEEEeeccc
Q 005101 394 QTI--PVYAIEDRSGRHRM---LKYTPEHMHCLA--TFWGPLAP------PQTGVVAVQNLSNNQASFRIAATAVVLEFN 460 (714)
Q Consensus 394 qt~--PIyS~~d~n~R~K~---lKYtpeh~~c~A--TfyGPit~------p~tpvlafq~~s~~~~~frI~ATG~vl~~D 460 (714)
... .|.+.-|.++-.+. -++...+..|.+ .+--|+++ +.+|=++++.. -+.+|.|.|+++.
T Consensus 367 ~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~v~~~~ 440 (458)
T 1f60_A 367 ACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM------RQTVAVGVIKSVD 440 (458)
T ss_dssp EEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEET------TEEEEEEEEEEEE
T ss_pred EEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEEC------CeEEEEEEEEeec
Confidence 543 23333343322222 235556655444 44567654 23345555542 1899999999887
Q ss_pred Cc
Q 005101 461 HE 462 (714)
Q Consensus 461 ~s 462 (714)
+.
T Consensus 441 ~~ 442 (458)
T 1f60_A 441 KT 442 (458)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 10
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=36.30 E-value=56 Score=36.74 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=45.4
Q ss_pred ccccccCCcEEEEeeeeeeeeeeeeeecCCCccceeeeecCCCceEEEEEE---eecCC------CCceEEEEEeccCCC
Q 005101 375 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFW---GPLAP------PQTGVVAVQNLSNNQ 445 (714)
Q Consensus 375 ~kiLKSkDpLIfsiGwRRFqt~PIyS~~d~n~R~K~lKYtpeh~~c~ATfy---GPit~------p~tpvlafq~~s~~~ 445 (714)
..||....+++|+||-.+-...- .....+. +--++...+..|.+.|- .|+++ +..+-++++..
T Consensus 508 ~~pi~~g~~~~l~~~t~~~~~~i--~l~~~~~--~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~---- 579 (592)
T 3mca_A 508 HGPILSGSTLVLHLGRTVTSVSL--KIVTVNN--KRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS---- 579 (592)
T ss_dssp SSCEETTEEEEEECSSCEEEEEE--EEEESSS--SCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESS----
T ss_pred CccCCCCCEEEEEEcCcEEEEEE--EEEeccc--cchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEEC----
Confidence 46899999999999977654432 2211111 11234556767776665 67766 55555556542
Q ss_pred CCeEEEEEEEeecc
Q 005101 446 ASFRIAATAVVLEF 459 (714)
Q Consensus 446 ~~frI~ATG~vl~~ 459 (714)
-+.+|.|+|..+
T Consensus 580 --~~Tv~~G~i~~v 591 (592)
T 3mca_A 580 --GDTVAAGIVKEL 591 (592)
T ss_dssp --SSEEEEEEEEEE
T ss_pred --CcEEEEEEEEEc
Confidence 268899988754
No 11
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=32.97 E-value=4.7e+02 Score=27.72 Aligned_cols=134 Identities=8% Similarity=0.080 Sum_probs=70.1
Q ss_pred HhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeee
Q 005101 317 ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI 396 (714)
Q Consensus 317 ~~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgGLl~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwRRFqt~ 396 (714)
.++.+.||+.|.|.|.++...-+. .+.-|.-.+-.+.....=-.++.+-. ++.+|+....++|++|-.+-...
T Consensus 285 ~~~~a~aG~~v~~~l~g~~~~~i~---~Gd~l~~~~~~~~~~~~f~a~v~~l~----~~~~l~~g~~~~~~~~t~~~~~~ 357 (435)
T 1jny_A 285 KMDKAEPGDNIGFNVRGVEKKDIK---RGDVVGHPNNPPTVADEFTARIIVVW----HPTALANGYTPVLHVHTASVACR 357 (435)
T ss_dssp EESEECTTCEEEEEEESSCGGGCC---TTCEEECTTSCCCEESEEEEEEEECC----CSSCBCTTCCCEEEETTEEEEEE
T ss_pred EEeEEcCCCEEEEEEecCCHHHcC---CccEecCCCCCceEeEEEEEEEEEEC----CCCcCCCCCEEEEEeCCcEEEEE
Confidence 355688999999999987543221 11111110100111111111222211 25699999999999998876553
Q ss_pred --eeeeecCCCcccee---eeecCCCceEEEEE--EeecCCC------CceEEEEEeccCCCCCeEEEEEEEeecccCce
Q 005101 397 --PVYAIEDRSGRHRM---LKYTPEHMHCLATF--WGPLAPP------QTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 463 (714)
Q Consensus 397 --PIyS~~d~n~R~K~---lKYtpeh~~c~ATf--yGPit~p------~tpvlafq~~s~~~~~frI~ATG~vl~~D~sr 463 (714)
.|.+.-|.++-... -++...+..+.+.| --|+++- ++|=++++.. -+.+|.|.|+++.+..
T Consensus 358 i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~------~~tv~~G~i~~~~~~~ 431 (435)
T 1jny_A 358 VSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM------GKTVGVGIIVDVKPAK 431 (435)
T ss_dssp EEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET------TEEEEEEEEEEEEC--
T ss_pred EEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEEC------CeEEEEEEEeeecCcc
Confidence 34443343322222 13555666554443 4555442 2334555543 1799999999886644
No 12
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=32.65 E-value=2.7e+02 Score=29.99 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHhcCCCCCcEEEEEEeecChhhhhccCCCCceeEee--c-ccccceeeEEEEEEEecCcccccccccCCcEEEEeeee
Q 005101 315 RLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG--I-GLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWR 391 (714)
Q Consensus 315 R~~~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgG--L-l~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwR 391 (714)
|..++...||+.|.|.|.++...-+.. +. +++. - .+.....=-.++.+- + ++.||+...+++++||=.
T Consensus 328 ~~~~~~a~aG~~v~~~l~~~~~~di~r---G~--vl~~~~~~~~~~~~~f~a~v~~l---~-~~~~l~~g~~~~l~~~t~ 398 (483)
T 3p26_A 328 HEETDVAIKGDFVTLKLRKAYPEDIQN---GD--LAASVDYSSIHSAQCFVLELTTF---D-MNRPLLPGTPFILFIGVK 398 (483)
T ss_dssp CCEESCEETTCEEEEEEESCCGGGCCT---TC--EEECTTCCCCEECSEEEEEEEEC---S-CSSCBCTTCEEEEEETTE
T ss_pred cccccEECCCCEEEEEEEecccccCCc---eE--EEEcCCCCCCceeeEEEEEEEEE---C-CCCCCCCCCEEEEEeCce
Confidence 345566789999999998875443321 11 1111 1 111122222333332 2 467999999999999988
Q ss_pred eeeee--eeeeecCCCccc--eeeeecCCCceEEEEEEe-----ecCC------CCceEEEEEeccCCCCCeEEEEEEEe
Q 005101 392 RFQTI--PVYAIEDRSGRH--RMLKYTPEHMHCLATFWG-----PLAP------PQTGVVAVQNLSNNQASFRIAATAVV 456 (714)
Q Consensus 392 RFqt~--PIyS~~d~n~R~--K~lKYtpeh~~c~ATfyG-----Pit~------p~tpvlafq~~s~~~~~frI~ATG~v 456 (714)
+-... -|-+.-|.++-. .--++...+..+++.|-- |+++ +.+|=++++.. -+.+|.|+|
T Consensus 399 ~~~~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~------~~tv~~G~i 472 (483)
T 3p26_A 399 EQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD------GRTIAAGKI 472 (483)
T ss_dssp EEEEEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET------TEEEEEEEE
T ss_pred EEEEEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC------CCEEEEEEE
Confidence 65543 222222332211 112356667676666653 5433 34544444332 267899999
Q ss_pred ecccCc
Q 005101 457 LEFNHE 462 (714)
Q Consensus 457 l~~D~s 462 (714)
+..+..
T Consensus 473 ~~~~~~ 478 (483)
T 3p26_A 473 SEITQH 478 (483)
T ss_dssp EEECC-
T ss_pred EEeccc
Confidence 887654
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=30.62 E-value=3.8e+02 Score=28.04 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=43.1
Q ss_pred cccccCCcEEEEeeeeeeeeeeeeeecCCCccceeeeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEE
Q 005101 376 KVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 455 (714)
Q Consensus 376 kiLKSkDpLIfsiGwRRFqt~PIyS~~d~n~R~K~lKYtpeh~~c~ATfyGPit~p~tpvlafq~~s~~~~~frI~ATG~ 455 (714)
.+|+...+++|++|-.+-...-. ... . ..|...+--|+++..---++++... ....|++|+|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~-~~~----------~----~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~r~ig~G~ 405 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVIT-SAR----------G----DIADIKLKLPICAEIGDRVAISRRV--GSRWRLIGYGT 405 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEE-EEE----------T----TEEEEEEEEEEECCTTCEEEEEEEC--SSSEEEEEEEE
T ss_pred cCCCCCCEEEEEEcCCEEEEEEE-Eec----------C----CEEEEEECCcEEecCCCEEEEEEec--CCCeEEEEEEE
Confidence 79999999999999765443322 221 0 2666777789877554444444432 23679999998
Q ss_pred ee
Q 005101 456 VL 457 (714)
Q Consensus 456 vl 457 (714)
|.
T Consensus 406 i~ 407 (408)
T 1s0u_A 406 IE 407 (408)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 14
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=22.48 E-value=4.6e+02 Score=25.16 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=68.2
Q ss_pred hcCCCCCcEEEEEEeecChhhhhccCCCCceeEee--cccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeee
Q 005101 318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG--IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395 (714)
Q Consensus 318 ~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgG--Ll~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwRRFqt 395 (714)
++...||+.|.|.|.++...-+.. + -+++. -.+...+.=-.++.+-. +..+|....+.+++||-.+-..
T Consensus 58 ~~~A~aGd~V~l~L~gi~~~di~r---G--~vl~~~~~~~~~~~~f~a~v~~l~----~~~~i~~g~~~~l~~~t~~~~~ 128 (204)
T 3e1y_E 58 TDTVAPGENLKIRLKGIEEEEILP---G--FILCDPNNLCHSGRTFDAQIVIIE----HKSIICPGYNAVLHIHTCIEEV 128 (204)
T ss_dssp BSEECTTSEEEEEEEESSSSCCCT---T--CEEBCSSSCCCCCSEEEEEEECCS----CCSCCCTTEEEEEESSSCEEEE
T ss_pred eEEECCCCEEEEEEcCCCHHHCcc---c--eEEECCCCCCchhEEEEEEEEEeC----CCCccCCCceEEEEEeCCEEEE
Confidence 445789999999999886543221 1 11111 11111111122222222 2337889899999999876443
Q ss_pred --eeeeeecCCCcccee---eeecCCCceEEEEE--EeecCCCC------ceEEEEEeccCCCCCeEEEEEEEeecccC
Q 005101 396 --IPVYAIEDRSGRHRM---LKYTPEHMHCLATF--WGPLAPPQ------TGVVAVQNLSNNQASFRIAATAVVLEFNH 461 (714)
Q Consensus 396 --~PIyS~~d~n~R~K~---lKYtpeh~~c~ATf--yGPit~p~------tpvlafq~~s~~~~~frI~ATG~vl~~D~ 461 (714)
.-|.+.-|.++-.+. -++...+..+.+.+ =.|+++-+ +|=++++.. + +-+|.|.|+.+-+
T Consensus 129 ~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~-~-----~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 129 EITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE-G-----KTIAIGKVLKLVP 201 (204)
T ss_dssp EEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS-S-----SCCEEEEEEEECC
T ss_pred EEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC-C-----cEEEEEEEEEEec
Confidence 223333343322221 24666666655544 45665543 344444432 1 5688999987654
Done!