Query 005106
Match_columns 714
No_of_seqs 502 out of 2390
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 18:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.4E-35 3.1E-40 323.2 28.7 297 382-702 217-524 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.7E-35 5.7E-40 321.1 23.6 334 364-704 134-485 (966)
3 KOG4441 Proteins containing BT 100.0 1.1E-30 2.3E-35 300.6 17.9 219 175-403 30-260 (571)
4 PHA02713 hypothetical protein; 100.0 4.6E-30 1E-34 295.8 17.6 190 175-376 19-218 (557)
5 TIGR00990 3a0801s09 mitochondr 100.0 2.6E-27 5.6E-32 276.9 37.8 283 361-671 142-500 (615)
6 PHA02790 Kelch-like protein; P 100.0 5.3E-30 1.1E-34 290.8 13.4 174 175-357 16-196 (480)
7 TIGR00990 3a0801s09 mitochondr 100.0 2.3E-26 5E-31 268.9 37.8 297 361-684 175-555 (615)
8 PHA03098 kelch-like protein; P 100.0 2.7E-28 5.8E-33 280.5 18.5 186 177-376 5-200 (534)
9 PRK15174 Vi polysaccharide exp 99.9 2.9E-24 6.2E-29 252.6 38.3 314 363-704 59-381 (656)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.2E-22 2.6E-27 241.8 46.8 334 361-702 548-898 (899)
11 PRK15174 Vi polysaccharide exp 99.9 7.4E-24 1.6E-28 249.1 35.5 284 361-671 91-385 (656)
12 PRK11447 cellulose synthase su 99.9 1.1E-23 2.4E-28 262.2 36.5 307 361-670 284-703 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 2.4E-21 5.2E-26 230.7 47.1 313 362-684 481-817 (899)
14 PRK11447 cellulose synthase su 99.9 2.5E-22 5.3E-27 250.2 39.3 307 387-703 273-699 (1157)
15 PRK09782 bacteriophage N4 rece 99.9 1.9E-22 4.2E-27 243.7 31.8 266 382-673 476-746 (987)
16 KOG0547 Translocase of outer m 99.9 2.6E-22 5.6E-27 216.1 28.6 299 377-702 109-530 (606)
17 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.8E-26 213.9 35.2 292 384-702 36-345 (389)
18 KOG0547 Translocase of outer m 99.9 1.1E-21 2.3E-26 211.4 26.5 318 362-683 131-581 (606)
19 PRK09782 bacteriophage N4 rece 99.9 6.1E-21 1.3E-25 230.8 33.4 289 383-672 376-711 (987)
20 KOG1126 DNA-binding cell divis 99.9 4.6E-21 9.9E-26 213.8 24.9 263 385-672 355-625 (638)
21 KOG4350 Uncharacterized conser 99.9 8.9E-23 1.9E-27 214.1 10.6 193 177-377 40-237 (620)
22 PRK11189 lipoprotein NlpI; Pro 99.9 2.5E-20 5.4E-25 199.1 26.5 183 462-672 81-271 (296)
23 PRK11189 lipoprotein NlpI; Pro 99.9 1.2E-20 2.7E-25 201.5 23.6 236 396-653 39-286 (296)
24 PRK11788 tetratricopeptide rep 99.9 2.6E-19 5.6E-24 196.6 34.6 279 361-666 50-346 (389)
25 PRK10049 pgaA outer membrane p 99.9 3.4E-19 7.3E-24 213.5 35.2 311 361-676 98-466 (765)
26 PRK10049 pgaA outer membrane p 99.9 8.4E-19 1.8E-23 210.1 35.1 309 383-704 49-456 (765)
27 KOG0624 dsRNA-activated protei 99.8 6E-20 1.3E-24 190.7 21.3 213 447-672 43-257 (504)
28 PLN02789 farnesyltranstransfer 99.8 2.7E-19 5.9E-24 192.6 25.9 218 429-683 34-267 (320)
29 KOG0548 Molecular co-chaperone 99.8 1E-18 2.2E-23 191.1 26.1 102 388-489 7-114 (539)
30 KOG1126 DNA-binding cell divis 99.8 2.7E-19 5.9E-24 199.7 21.5 204 413-640 419-627 (638)
31 PRK12370 invasion protein regu 99.8 2.4E-18 5.3E-23 199.0 28.2 180 461-666 320-501 (553)
32 PRK12370 invasion protein regu 99.8 1.2E-18 2.7E-23 201.4 25.7 200 462-685 278-489 (553)
33 PLN02789 farnesyltranstransfer 99.8 5.8E-18 1.3E-22 182.3 24.9 220 397-650 34-267 (320)
34 KOG0624 dsRNA-activated protei 99.8 5E-17 1.1E-21 169.1 26.2 278 382-672 71-375 (504)
35 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.8E-23 182.8 15.8 255 388-667 13-277 (280)
36 KOG2002 TPR-containing nuclear 99.8 8.7E-16 1.9E-20 177.1 34.8 307 362-668 286-710 (1018)
37 KOG2075 Topoisomerase TOP1-int 99.8 4.1E-18 8.9E-23 183.7 14.6 177 174-359 107-298 (521)
38 KOG0550 Molecular chaperone (D 99.8 1.4E-17 3.1E-22 177.0 17.5 281 377-670 43-353 (486)
39 KOG1173 Anaphase-promoting com 99.8 2.2E-16 4.7E-21 173.6 27.0 270 391-685 252-537 (611)
40 TIGR02521 type_IV_pilW type IV 99.7 2.3E-16 5E-21 157.3 23.8 186 462-669 48-234 (234)
41 TIGR00540 hemY_coli hemY prote 99.7 8.5E-15 1.8E-19 163.5 34.4 284 382-685 83-384 (409)
42 TIGR02521 type_IV_pilW type IV 99.7 2.9E-15 6.2E-20 149.4 25.4 199 383-635 31-234 (234)
43 KOG1155 Anaphase-promoting com 99.7 2.2E-15 4.8E-20 162.2 24.2 253 384-666 228-494 (559)
44 KOG2002 TPR-containing nuclear 99.7 5.9E-15 1.3E-19 170.3 29.1 311 383-699 164-558 (1018)
45 KOG4591 Uncharacterized conser 99.7 4.7E-17 1E-21 157.5 10.0 171 175-352 60-244 (280)
46 PF00651 BTB: BTB/POZ domain; 99.7 2.1E-17 4.6E-22 149.7 7.2 102 177-281 6-110 (111)
47 KOG1129 TPR repeat-containing 99.7 3.6E-16 7.7E-21 162.0 16.7 239 388-651 228-476 (478)
48 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.6E-21 167.8 14.4 244 419-687 12-264 (280)
49 PRK15359 type III secretion sy 99.7 4.1E-16 8.9E-21 149.3 14.7 125 466-651 14-139 (144)
50 KOG1125 TPR repeat-containing 99.7 1.2E-15 2.6E-20 168.5 18.7 252 420-705 290-555 (579)
51 KOG2076 RNA polymerase III tra 99.7 2.1E-14 4.6E-19 164.9 29.0 282 384-665 140-510 (895)
52 PRK15359 type III secretion sy 99.7 1.1E-15 2.4E-20 146.3 14.9 124 500-683 14-138 (144)
53 PRK14574 hmsH outer membrane p 99.7 9.5E-14 2E-18 165.8 34.2 80 605-684 417-497 (822)
54 PRK10747 putative protoheme IX 99.6 1.8E-13 3.9E-18 152.3 31.7 274 382-682 83-372 (398)
55 COG3063 PilF Tfp pilus assembl 99.6 4.6E-15 1E-19 148.3 16.7 163 448-669 41-204 (250)
56 KOG1155 Anaphase-promoting com 99.6 5.9E-14 1.3E-18 151.4 25.6 258 387-672 266-541 (559)
57 TIGR00540 hemY_coli hemY prote 99.6 1.9E-13 4.1E-18 152.7 30.9 279 362-667 100-399 (409)
58 smart00225 BTB Broad-Complex, 99.6 1.4E-15 3E-20 130.6 9.2 90 183-275 1-90 (90)
59 KOG1125 TPR repeat-containing 99.6 2.5E-14 5.4E-19 158.2 19.7 225 387-636 289-530 (579)
60 KOG0548 Molecular co-chaperone 99.6 7.1E-14 1.5E-18 153.6 22.9 246 382-663 223-485 (539)
61 KOG1174 Anaphase-promoting com 99.6 6.8E-13 1.5E-17 141.4 29.5 277 384-689 233-521 (564)
62 cd05804 StaR_like StaR_like; a 99.6 1E-12 2.2E-17 142.8 31.0 271 382-668 42-337 (355)
63 TIGR03302 OM_YfiO outer membra 99.6 2.2E-13 4.8E-18 139.8 21.4 165 462-667 50-232 (235)
64 PRK14574 hmsH outer membrane p 99.6 2.7E-12 5.8E-17 153.4 31.9 322 344-672 99-518 (822)
65 KOG4682 Uncharacterized conser 99.5 4.9E-14 1.1E-18 149.2 13.5 177 175-359 63-250 (488)
66 cd05804 StaR_like StaR_like; a 99.5 1.2E-11 2.5E-16 134.4 32.4 296 383-702 6-334 (355)
67 KOG0550 Molecular chaperone (D 99.5 1.1E-13 2.4E-18 147.6 13.9 239 421-683 55-333 (486)
68 PRK10747 putative protoheme IX 99.5 1.1E-11 2.4E-16 138.0 30.4 254 386-667 121-390 (398)
69 KOG1173 Anaphase-promoting com 99.5 2.5E-12 5.5E-17 141.9 24.2 218 415-650 312-535 (611)
70 KOG2076 RNA polymerase III tra 99.5 8.8E-12 1.9E-16 143.7 28.5 257 416-672 140-483 (895)
71 KOG1129 TPR repeat-containing 99.5 6E-13 1.3E-17 138.3 17.0 226 420-672 228-463 (478)
72 PRK15179 Vi polysaccharide bio 99.5 1.8E-12 3.9E-17 152.4 22.0 159 462-678 69-229 (694)
73 COG3063 PilF Tfp pilus assembl 99.5 6.8E-12 1.5E-16 125.8 22.8 203 383-640 35-243 (250)
74 PRK10370 formate-dependent nit 99.4 4.2E-12 9.1E-17 128.1 18.7 121 462-640 56-180 (198)
75 KOG1840 Kinesin light chain [C 99.4 7.7E-12 1.7E-16 141.2 22.4 231 383-666 199-478 (508)
76 TIGR03302 OM_YfiO outer membra 99.4 4.7E-12 1E-16 130.0 18.6 163 381-543 31-234 (235)
77 KOG4162 Predicted calmodulin-b 99.4 1.3E-10 2.7E-15 132.5 31.2 312 386-697 360-783 (799)
78 PRK10370 formate-dependent nit 99.4 2.5E-12 5.5E-17 129.7 15.6 123 492-672 52-178 (198)
79 KOG0553 TPR repeat-containing 99.4 2.6E-12 5.7E-17 133.3 14.6 133 482-672 84-222 (304)
80 KOG0553 TPR repeat-containing 99.4 1.7E-12 3.6E-17 134.7 12.6 88 459-546 95-183 (304)
81 KOG4162 Predicted calmodulin-b 99.4 4.7E-11 1E-15 135.9 23.6 281 364-672 462-788 (799)
82 TIGR02552 LcrH_SycD type III s 99.4 7E-12 1.5E-16 117.2 13.9 72 603-674 50-121 (135)
83 KOG0783 Uncharacterized conser 99.4 4.3E-13 9.3E-18 151.6 6.1 141 177-320 706-852 (1267)
84 PRK15179 Vi polysaccharide bio 99.4 4.9E-11 1.1E-15 140.4 22.4 145 442-644 79-228 (694)
85 PLN03081 pentatricopeptide (PP 99.4 5.6E-09 1.2E-13 124.6 40.3 278 385-667 261-557 (697)
86 KOG1128 Uncharacterized conser 99.3 5.6E-11 1.2E-15 134.6 20.9 215 387-635 402-618 (777)
87 KOG1127 TPR repeat-containing 99.3 3.8E-11 8.3E-16 139.0 19.9 248 394-666 430-699 (1238)
88 TIGR02552 LcrH_SycD type III s 99.3 2.6E-11 5.7E-16 113.3 14.6 116 467-640 5-121 (135)
89 PLN03218 maturation of RBCL 1; 99.3 2.9E-08 6.3E-13 122.2 44.7 284 387-674 476-792 (1060)
90 KOG1127 TPR repeat-containing 99.3 1.2E-10 2.6E-15 135.0 21.9 297 382-679 491-892 (1238)
91 KOG0495 HAT repeat protein [RN 99.3 4.5E-09 9.8E-14 117.8 33.2 265 396-685 563-867 (913)
92 KOG1840 Kinesin light chain [C 99.3 1.9E-10 4.1E-15 130.1 22.8 266 386-668 131-439 (508)
93 KOG2003 TPR repeat-containing 99.3 6E-10 1.3E-14 119.9 24.2 275 387-667 423-725 (840)
94 PLN03218 maturation of RBCL 1; 99.3 1.1E-08 2.4E-13 125.9 36.8 314 383-702 437-781 (1060)
95 PLN03081 pentatricopeptide (PP 99.3 4.7E-09 1E-13 125.2 32.9 153 383-541 189-354 (697)
96 PRK04841 transcriptional regul 99.3 2.2E-09 4.8E-14 131.2 30.7 269 383-672 452-765 (903)
97 PLN03077 Protein ECB2; Provisi 99.3 6.1E-09 1.3E-13 127.0 33.9 324 340-673 284-659 (857)
98 COG2956 Predicted N-acetylgluc 99.3 8.2E-09 1.8E-13 108.1 29.3 274 387-686 39-331 (389)
99 PLN03077 Protein ECB2; Provisi 99.2 5.4E-08 1.2E-12 118.8 41.2 251 383-666 424-719 (857)
100 KOG1174 Anaphase-promoting com 99.2 1.8E-09 4E-14 115.6 23.5 251 363-641 249-508 (564)
101 PRK10153 DNA-binding transcrip 99.2 6.1E-10 1.3E-14 127.5 19.3 148 511-676 336-491 (517)
102 KOG2003 TPR repeat-containing 99.2 4.4E-09 9.5E-14 113.4 23.9 218 385-628 492-717 (840)
103 PLN03088 SGT1, suppressor of 99.2 2.1E-10 4.5E-15 126.0 14.4 96 449-547 9-105 (356)
104 PLN03088 SGT1, suppressor of 99.2 4.4E-10 9.5E-15 123.4 15.5 112 482-651 5-117 (356)
105 COG5010 TadD Flp pilus assembl 99.2 3.3E-09 7.2E-14 108.6 20.5 177 462-663 50-227 (257)
106 KOG1156 N-terminal acetyltrans 99.1 1.4E-08 3E-13 114.3 25.3 290 384-695 8-312 (700)
107 COG5010 TadD Flp pilus assembl 99.1 3.3E-09 7.2E-14 108.6 18.6 164 402-572 52-222 (257)
108 COG0457 NrfG FOG: TPR repeat [ 99.1 8.2E-08 1.8E-12 91.7 26.5 233 396-683 36-278 (291)
109 PRK11906 transcriptional regul 99.1 2.3E-09 5E-14 118.2 17.4 155 516-688 259-425 (458)
110 PF13414 TPR_11: TPR repeat; P 99.1 2.8E-10 6.1E-15 94.2 7.6 67 603-669 2-69 (69)
111 PF13414 TPR_11: TPR repeat; P 99.1 4.6E-10 9.9E-15 92.9 8.3 67 477-543 1-69 (69)
112 KOG4648 Uncharacterized conser 99.1 1.2E-10 2.7E-15 121.8 5.8 222 447-672 102-335 (536)
113 PRK15363 pathogenicity island 99.1 2.8E-09 6.2E-14 102.5 14.7 76 603-678 68-146 (157)
114 KOG1156 N-terminal acetyltrans 99.0 2.3E-08 5E-13 112.5 22.8 238 425-679 17-260 (700)
115 COG2956 Predicted N-acetylgluc 99.0 9.6E-08 2.1E-12 100.2 25.2 182 364-545 87-282 (389)
116 COG4785 NlpI Lipoprotein NlpI, 99.0 9.4E-09 2E-13 102.3 16.9 191 449-668 65-267 (297)
117 KOG0495 HAT repeat protein [RN 99.0 9.8E-07 2.1E-11 99.5 34.5 251 394-672 629-885 (913)
118 PRK14720 transcript cleavage f 99.0 2.8E-08 6.2E-13 118.5 23.8 254 382-670 30-309 (906)
119 PRK11906 transcriptional regul 99.0 1.4E-08 3.1E-13 112.0 19.5 155 462-664 275-433 (458)
120 PRK15363 pathogenicity island 99.0 2.6E-09 5.6E-14 102.8 12.1 82 462-543 52-134 (157)
121 PRK04841 transcriptional regul 99.0 1.4E-07 3.1E-12 115.4 30.5 280 387-685 413-745 (903)
122 COG3071 HemY Uncharacterized e 99.0 1.2E-06 2.6E-11 94.4 31.8 277 383-667 84-390 (400)
123 PRK10153 DNA-binding transcrip 99.0 8E-09 1.7E-13 118.5 16.3 144 383-548 339-489 (517)
124 PRK02603 photosystem I assembl 99.0 8E-09 1.7E-13 101.6 14.1 66 606-671 74-153 (172)
125 PF04733 Coatomer_E: Coatomer 99.0 9.4E-09 2E-13 109.8 15.6 248 394-671 12-269 (290)
126 CHL00033 ycf3 photosystem I as 99.0 1.2E-08 2.5E-13 99.9 14.4 121 495-670 15-152 (168)
127 KOG1130 Predicted G-alpha GTPa 99.0 7.1E-09 1.5E-13 111.0 13.5 62 606-667 277-344 (639)
128 PRK14720 transcript cleavage f 99.0 1E-08 2.2E-13 122.2 16.3 155 471-667 23-178 (906)
129 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.8E-08 4E-13 91.0 14.2 66 480-545 3-72 (119)
130 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.5E-08 3.3E-13 91.5 13.3 105 513-672 3-110 (119)
131 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 2.8E-09 6E-14 117.4 9.8 101 598-704 69-174 (453)
132 KOG4555 TPR repeat-containing 98.9 2.2E-08 4.7E-13 92.5 12.7 87 459-545 57-148 (175)
133 PRK02603 photosystem I assembl 98.9 2.9E-08 6.2E-13 97.6 14.5 71 476-546 32-106 (172)
134 PF12569 NARP1: NMDA receptor- 98.9 5.7E-07 1.2E-11 103.0 26.7 257 388-663 9-287 (517)
135 PF13432 TPR_16: Tetratricopep 98.9 4.7E-09 1E-13 85.9 7.2 65 608-672 1-65 (65)
136 KOG4648 Uncharacterized conser 98.9 1.9E-09 4.1E-14 113.1 5.8 186 386-571 100-327 (536)
137 COG0457 NrfG FOG: TPR repeat [ 98.9 1E-06 2.3E-11 84.0 24.6 220 383-662 59-288 (291)
138 KOG1130 Predicted G-alpha GTPa 98.9 2.3E-08 5E-13 107.2 13.4 274 366-653 37-370 (639)
139 KOG3060 Uncharacterized conser 98.8 3.9E-07 8.4E-12 93.0 20.9 187 473-683 46-240 (289)
140 PF12569 NARP1: NMDA receptor- 98.8 4.7E-07 1E-11 103.7 23.7 234 416-672 5-262 (517)
141 COG4783 Putative Zn-dependent 98.8 5.3E-07 1.1E-11 99.4 22.8 131 414-544 305-440 (484)
142 CHL00033 ycf3 photosystem I as 98.8 7.4E-08 1.6E-12 94.2 14.5 86 462-547 16-107 (168)
143 KOG0543 FKBP-type peptidyl-pro 98.8 6.2E-08 1.3E-12 104.8 14.7 114 419-547 212-326 (397)
144 cd00189 TPR Tetratricopeptide 98.8 4.4E-08 9.5E-13 81.8 10.6 83 462-544 17-100 (100)
145 COG4783 Putative Zn-dependent 98.8 7.6E-07 1.6E-11 98.2 21.5 137 512-672 306-442 (484)
146 PF14938 SNAP: Soluble NSF att 98.8 6.7E-08 1.5E-12 102.8 13.1 206 383-607 35-274 (282)
147 COG3071 HemY Uncharacterized e 98.8 6.2E-06 1.3E-10 89.0 27.7 261 422-693 91-382 (400)
148 KOG3060 Uncharacterized conser 98.8 7.5E-07 1.6E-11 91.0 19.6 210 351-611 18-232 (289)
149 KOG1128 Uncharacterized conser 98.8 5.7E-07 1.2E-11 102.7 20.8 175 385-571 426-606 (777)
150 KOG4234 TPR repeat-containing 98.7 8.7E-08 1.9E-12 94.5 11.4 101 421-546 101-202 (271)
151 KOG2376 Signal recognition par 98.7 1.3E-06 2.9E-11 97.8 22.0 212 426-674 23-260 (652)
152 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.1E-08 6.8E-13 109.2 9.1 73 473-545 69-146 (453)
153 PF13432 TPR_16: Tetratricopep 98.7 5.7E-08 1.2E-12 79.5 8.4 63 483-545 1-64 (65)
154 cd00189 TPR Tetratricopeptide 98.7 1.7E-07 3.8E-12 78.1 11.3 82 589-670 19-100 (100)
155 PRK10866 outer membrane biogen 98.7 2.9E-06 6.3E-11 88.5 21.6 179 415-661 32-235 (243)
156 COG4785 NlpI Lipoprotein NlpI, 98.7 1.3E-06 2.8E-11 87.4 17.3 186 421-636 71-269 (297)
157 KOG4234 TPR repeat-containing 98.6 1.6E-07 3.4E-12 92.7 10.5 102 482-641 98-205 (271)
158 PF14938 SNAP: Soluble NSF att 98.6 2.2E-06 4.7E-11 91.3 20.2 211 397-696 29-258 (282)
159 KOG0543 FKBP-type peptidyl-pro 98.6 4.9E-07 1.1E-11 98.0 14.9 148 383-544 208-358 (397)
160 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.3E-11 84.1 14.9 79 460-539 63-145 (145)
161 PF12895 Apc3: Anaphase-promot 98.6 1.3E-07 2.7E-12 81.7 6.9 75 589-664 8-84 (84)
162 PRK10803 tol-pal system protei 98.5 1.2E-06 2.7E-11 92.2 14.5 107 479-640 142-253 (263)
163 PF12895 Apc3: Anaphase-promot 98.5 2E-07 4.3E-12 80.5 6.9 79 459-538 3-84 (84)
164 PF12688 TPR_5: Tetratrico pep 98.5 1.1E-06 2.5E-11 81.5 12.2 99 513-666 2-103 (120)
165 PRK10866 outer membrane biogen 98.5 7.2E-06 1.6E-10 85.5 19.6 152 383-534 32-234 (243)
166 PF13525 YfiO: Outer membrane 98.5 1.7E-05 3.8E-10 80.3 21.1 50 608-657 145-197 (203)
167 COG4235 Cytochrome c biogenesi 98.5 2.2E-06 4.8E-11 90.0 14.6 124 462-640 139-263 (287)
168 PF13371 TPR_9: Tetratricopept 98.5 5.6E-07 1.2E-11 75.1 8.1 68 611-678 2-70 (73)
169 PF09976 TPR_21: Tetratricopep 98.5 4E-06 8.6E-11 80.1 14.9 119 491-665 23-145 (145)
170 PF13525 YfiO: Outer membrane 98.5 1.4E-05 3E-10 81.0 19.6 148 382-529 4-195 (203)
171 PRK10803 tol-pal system protei 98.4 2.9E-06 6.3E-11 89.4 14.4 107 511-672 141-251 (263)
172 PF13371 TPR_9: Tetratricopept 98.4 7.1E-07 1.5E-11 74.5 7.6 50 462-511 12-61 (73)
173 PF12688 TPR_5: Tetratrico pep 98.4 5E-06 1.1E-10 77.3 13.9 99 479-632 1-103 (120)
174 PF06552 TOM20_plant: Plant sp 98.4 4.5E-07 9.7E-12 88.7 7.0 86 462-547 8-115 (186)
175 PF14559 TPR_19: Tetratricopep 98.4 6.9E-07 1.5E-11 73.4 7.2 65 614-678 1-66 (68)
176 PF06552 TOM20_plant: Plant sp 98.4 9.1E-07 2E-11 86.6 8.4 93 590-683 11-124 (186)
177 COG4235 Cytochrome c biogenesi 98.4 3E-06 6.6E-11 89.0 12.8 113 434-546 141-261 (287)
178 KOG3785 Uncharacterized conser 98.4 0.00042 9E-09 74.0 27.4 279 387-676 61-463 (557)
179 KOG2376 Signal recognition par 98.4 0.00068 1.5E-08 76.6 30.5 284 387-672 83-418 (652)
180 PF04733 Coatomer_E: Coatomer 98.3 1.1E-05 2.5E-10 86.2 15.1 158 386-547 105-271 (290)
181 KOG1308 Hsp70-interacting prot 98.3 3.4E-07 7.3E-12 96.9 3.1 112 461-572 130-242 (377)
182 KOG0376 Serine-threonine phosp 98.3 1.1E-06 2.3E-11 97.1 6.5 87 460-546 19-106 (476)
183 KOG0783 Uncharacterized conser 98.3 1E-06 2.2E-11 101.0 6.1 71 177-247 554-634 (1267)
184 PF13424 TPR_12: Tetratricopep 98.3 8.8E-07 1.9E-11 75.1 4.3 68 601-668 2-76 (78)
185 KOG4555 TPR repeat-containing 98.3 1.1E-05 2.3E-10 75.0 11.4 85 588-672 61-149 (175)
186 KOG3081 Vesicle coat complex C 98.2 0.00011 2.4E-09 75.9 19.6 242 397-667 22-270 (299)
187 KOG1941 Acetylcholine receptor 98.2 5.8E-05 1.2E-09 80.6 17.8 234 387-671 10-279 (518)
188 KOG4340 Uncharacterized conser 98.2 0.0003 6.5E-09 73.6 22.4 296 361-706 25-360 (459)
189 KOG3785 Uncharacterized conser 98.2 0.00034 7.4E-09 74.6 22.2 259 395-690 34-335 (557)
190 COG4700 Uncharacterized protei 98.2 0.00017 3.8E-09 70.9 18.6 168 462-655 73-246 (251)
191 KOG2047 mRNA splicing factor [ 98.2 0.0026 5.6E-08 72.6 30.2 313 347-707 213-583 (835)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.6E-05 5.6E-10 86.6 14.3 107 396-503 182-292 (395)
193 KOG0376 Serine-threonine phosp 98.2 2.2E-06 4.9E-11 94.5 5.7 94 422-515 11-109 (476)
194 PRK15331 chaperone protein Sic 98.1 3.5E-05 7.6E-10 74.8 13.1 74 604-678 71-144 (165)
195 PRK15331 chaperone protein Sic 98.1 1.4E-05 3.1E-10 77.5 10.2 83 462-545 54-137 (165)
196 PF13424 TPR_12: Tetratricopep 98.1 2.9E-06 6.3E-11 71.9 4.6 66 476-541 2-75 (78)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.3E-05 1.2E-09 84.1 15.1 94 589-683 219-312 (395)
198 KOG0511 Ankyrin repeat protein 98.1 7E-06 1.5E-10 87.4 7.6 141 184-329 295-444 (516)
199 KOG2053 Mitochondrial inherita 98.1 0.00076 1.6E-08 79.3 24.7 228 427-671 21-259 (932)
200 KOG4642 Chaperone-dependent E3 98.1 1.1E-05 2.4E-10 81.8 8.0 83 460-542 25-108 (284)
201 PF13431 TPR_17: Tetratricopep 98.1 3.8E-06 8.3E-11 60.3 3.4 32 627-658 2-33 (34)
202 PF14559 TPR_19: Tetratricopep 98.1 1.3E-05 2.7E-10 65.9 7.0 57 462-518 8-65 (68)
203 KOG1915 Cell cycle control pro 98.0 0.0065 1.4E-07 67.3 29.4 278 393-672 217-541 (677)
204 PF07707 BACK: BTB And C-termi 98.0 3.7E-06 8.1E-11 75.0 3.5 83 288-376 1-91 (103)
205 PF13431 TPR_17: Tetratricopep 98.0 5.2E-06 1.1E-10 59.6 3.3 33 468-500 2-34 (34)
206 COG4700 Uncharacterized protei 98.0 0.00065 1.4E-08 67.0 18.1 118 426-546 67-194 (251)
207 COG3898 Uncharacterized membra 97.9 0.056 1.2E-06 59.0 33.1 287 387-707 88-395 (531)
208 PF13512 TPR_18: Tetratricopep 97.9 0.00028 6E-09 67.2 13.9 69 479-547 10-82 (142)
209 COG4105 ComL DNA uptake lipopr 97.9 0.0035 7.6E-08 65.0 22.7 146 383-544 34-199 (254)
210 PF13512 TPR_18: Tetratricopep 97.9 0.0001 2.2E-09 70.1 10.1 73 384-456 11-91 (142)
211 KOG1308 Hsp70-interacting prot 97.8 2.1E-05 4.4E-10 83.7 5.3 87 426-512 125-215 (377)
212 KOG4642 Chaperone-dependent E3 97.8 4.7E-05 1E-09 77.4 7.6 79 589-667 29-107 (284)
213 KOG4340 Uncharacterized conser 97.8 0.00049 1.1E-08 72.0 15.1 177 462-666 27-206 (459)
214 KOG0545 Aryl-hydrocarbon recep 97.8 0.00025 5.5E-09 72.4 12.0 120 384-514 179-299 (329)
215 PF00515 TPR_1: Tetratricopept 97.7 5.5E-05 1.2E-09 53.6 4.5 34 638-671 1-34 (34)
216 COG1729 Uncharacterized protei 97.7 0.00054 1.2E-08 71.5 12.8 103 386-515 144-251 (262)
217 KOG1915 Cell cycle control pro 97.7 0.12 2.7E-06 57.6 31.2 317 389-712 79-442 (677)
218 PF02214 BTB_2: BTB/POZ domain 97.7 6.8E-05 1.5E-09 66.3 5.3 88 184-274 1-94 (94)
219 KOG2716 Polymerase delta-inter 97.6 0.0003 6.5E-09 72.0 10.2 96 184-283 7-106 (230)
220 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.6E-09 55.4 5.2 43 604-646 1-43 (44)
221 KOG0530 Protein farnesyltransf 97.6 0.0059 1.3E-07 63.3 18.8 79 467-545 65-146 (318)
222 PF00515 TPR_1: Tetratricopept 97.6 0.00011 2.5E-09 52.0 4.4 32 480-511 2-33 (34)
223 KOG2838 Uncharacterized conser 97.6 4.1E-05 8.9E-10 78.5 2.7 57 191-248 261-327 (401)
224 COG1729 Uncharacterized protei 97.5 0.0013 2.9E-08 68.6 13.8 105 482-641 144-252 (262)
225 KOG1941 Acetylcholine receptor 97.5 0.029 6.4E-07 60.5 23.1 262 379-659 79-383 (518)
226 KOG2796 Uncharacterized conser 97.5 0.0037 8E-08 64.7 15.9 139 480-636 178-318 (366)
227 smart00875 BACK BTB And C-term 97.5 0.00013 2.9E-09 64.3 4.7 80 289-375 2-89 (101)
228 KOG1550 Extracellular protein 97.5 0.032 6.9E-07 65.2 25.4 266 382-672 243-543 (552)
229 COG3898 Uncharacterized membra 97.4 0.14 3.1E-06 56.0 27.1 248 390-667 127-392 (531)
230 PF07719 TPR_2: Tetratricopept 97.4 0.00022 4.9E-09 50.1 4.2 33 638-670 1-33 (34)
231 COG4105 ComL DNA uptake lipopr 97.4 0.037 8.1E-07 57.6 21.6 202 413-683 32-248 (254)
232 KOG2471 TPR repeat-containing 97.4 0.0044 9.5E-08 68.8 15.5 276 382-663 282-680 (696)
233 KOG0530 Protein farnesyltransf 97.3 0.041 9E-07 57.2 21.2 179 398-616 41-233 (318)
234 KOG0545 Aryl-hydrocarbon recep 97.3 0.0041 8.9E-08 63.8 13.6 120 415-546 178-298 (329)
235 KOG2047 mRNA splicing factor [ 97.3 0.054 1.2E-06 62.3 23.4 289 386-676 390-728 (835)
236 KOG3473 RNA polymerase II tran 97.3 0.0011 2.3E-08 58.1 7.9 80 184-267 19-112 (112)
237 KOG1070 rRNA processing protei 97.3 0.014 3.1E-07 71.6 19.9 224 462-685 1441-1683(1710)
238 KOG1586 Protein required for f 97.3 0.019 4E-07 58.8 17.8 84 462-545 90-187 (288)
239 PF07719 TPR_2: Tetratricopept 97.3 0.00049 1.1E-08 48.3 4.8 34 604-637 1-34 (34)
240 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0016 3.4E-08 69.4 9.5 75 479-553 81-160 (390)
241 KOG1550 Extracellular protein 97.2 0.073 1.6E-06 62.2 23.9 270 387-684 216-519 (552)
242 PF04184 ST7: ST7 protein; In 97.1 0.028 6E-07 63.2 18.9 44 431-474 184-229 (539)
243 COG3118 Thioredoxin domain-con 97.1 0.02 4.4E-07 60.5 16.6 157 485-665 140-299 (304)
244 PF13281 DUF4071: Domain of un 97.1 0.085 1.8E-06 58.3 21.8 198 383-648 141-349 (374)
245 KOG1987 Speckle-type POZ prote 97.0 0.00044 9.6E-09 74.0 3.8 120 190-313 109-231 (297)
246 KOG2838 Uncharacterized conser 97.0 0.00059 1.3E-08 70.2 3.9 89 179-268 128-219 (401)
247 KOG2796 Uncharacterized conser 97.0 0.017 3.7E-07 60.0 14.1 138 376-513 168-320 (366)
248 KOG2053 Mitochondrial inherita 96.9 0.17 3.8E-06 60.2 23.6 217 395-637 21-259 (932)
249 COG2976 Uncharacterized protei 96.9 0.23 5E-06 49.8 21.1 82 462-545 106-192 (207)
250 PF13428 TPR_14: Tetratricopep 96.9 0.0021 4.5E-08 48.6 5.1 41 638-678 1-42 (44)
251 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0032 6.9E-08 67.1 8.2 65 480-544 120-185 (390)
252 KOG2610 Uncharacterized conser 96.9 0.046 9.9E-07 58.6 16.7 185 362-546 82-283 (491)
253 KOG1586 Protein required for f 96.8 0.17 3.6E-06 52.1 19.5 123 425-547 83-230 (288)
254 KOG3617 WD40 and TPR repeat-co 96.8 0.16 3.4E-06 60.0 21.4 141 387-539 830-994 (1416)
255 PF03704 BTAD: Bacterial trans 96.8 0.036 7.7E-07 52.6 14.0 100 425-540 16-124 (146)
256 PF13281 DUF4071: Domain of un 96.8 0.073 1.6E-06 58.7 17.9 163 361-545 156-338 (374)
257 PF03704 BTAD: Bacterial trans 96.7 0.043 9.4E-07 52.0 14.4 61 606-666 64-124 (146)
258 PF13181 TPR_8: Tetratricopept 96.6 0.003 6.4E-08 44.5 4.0 31 639-669 2-32 (34)
259 PF12968 DUF3856: Domain of Un 96.6 0.066 1.4E-06 49.4 13.4 106 383-508 7-129 (144)
260 PF13181 TPR_8: Tetratricopept 96.5 0.004 8.7E-08 43.8 4.3 34 604-637 1-34 (34)
261 COG0790 FOG: TPR repeat, SEL1 96.5 0.2 4.3E-06 53.2 18.7 158 384-545 74-270 (292)
262 KOG1070 rRNA processing protei 96.4 0.4 8.6E-06 59.7 22.4 234 399-655 1440-1686(1710)
263 PF02259 FAT: FAT domain; Int 96.4 0.52 1.1E-05 50.9 21.8 171 475-670 142-341 (352)
264 COG0790 FOG: TPR repeat, SEL1 96.3 0.94 2E-05 48.0 23.0 206 388-677 46-276 (292)
265 KOG1585 Protein required for f 96.3 0.5 1.1E-05 49.0 19.2 161 485-661 77-250 (308)
266 KOG3616 Selective LIM binding 96.3 0.3 6.6E-06 56.9 19.2 56 614-669 960-1026(1636)
267 KOG0529 Protein geranylgeranyl 96.2 0.36 7.9E-06 53.3 18.9 173 495-692 91-285 (421)
268 KOG3081 Vesicle coat complex C 96.1 0.14 3.1E-06 53.4 14.5 157 387-546 112-276 (299)
269 smart00028 TPR Tetratricopepti 96.1 0.0078 1.7E-07 39.8 3.6 32 639-670 2-33 (34)
270 PF04184 ST7: ST7 protein; In 96.0 0.11 2.4E-06 58.5 14.0 81 604-684 259-347 (539)
271 PF11822 DUF3342: Domain of un 96.0 0.0074 1.6E-07 64.5 4.7 90 191-282 14-104 (317)
272 PRK10941 hypothetical protein; 96.0 0.046 1E-06 57.9 10.7 67 481-547 183-250 (269)
273 KOG3617 WD40 and TPR repeat-co 96.0 0.46 1E-05 56.2 19.2 55 607-666 941-995 (1416)
274 PF02259 FAT: FAT domain; Int 96.0 1.3 2.8E-05 47.8 22.3 44 638-681 252-302 (352)
275 PRK10941 hypothetical protein; 96.0 0.039 8.5E-07 58.5 10.0 59 589-647 200-258 (269)
276 PF10300 DUF3808: Protein of u 95.9 0.17 3.7E-06 57.9 15.6 116 429-544 247-379 (468)
277 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.036 7.7E-07 44.0 7.0 46 513-564 2-47 (53)
278 COG3118 Thioredoxin domain-con 95.9 0.18 3.9E-06 53.6 14.1 123 388-511 139-268 (304)
279 smart00512 Skp1 Found in Skp1 95.9 0.034 7.4E-07 50.2 7.8 81 184-267 4-104 (104)
280 PF10300 DUF3808: Protein of u 95.8 0.73 1.6E-05 52.9 20.1 81 462-542 250-335 (468)
281 PF13174 TPR_6: Tetratricopept 95.8 0.011 2.4E-07 40.9 3.4 32 639-670 1-32 (33)
282 PF12968 DUF3856: Domain of Un 95.7 0.22 4.8E-06 46.1 11.9 63 479-541 55-129 (144)
283 PF08631 SPO22: Meiosis protei 95.6 3.7 8.1E-05 43.6 23.6 28 638-665 246-273 (278)
284 smart00028 TPR Tetratricopepti 95.5 0.021 4.6E-07 37.6 3.8 34 604-637 1-34 (34)
285 COG4941 Predicted RNA polymera 95.4 0.14 3.1E-06 55.0 11.4 191 462-679 213-407 (415)
286 KOG2300 Uncharacterized conser 95.3 5.8 0.00012 45.0 23.7 193 395-643 287-524 (629)
287 KOG2610 Uncharacterized conser 95.3 0.16 3.5E-06 54.6 11.3 147 462-666 120-275 (491)
288 PF13176 TPR_7: Tetratricopept 95.3 0.026 5.7E-07 40.7 3.9 29 640-668 1-29 (36)
289 PF04781 DUF627: Protein of un 95.2 0.091 2E-06 48.0 7.9 87 422-508 3-107 (111)
290 KOG1665 AFH1-interacting prote 95.1 0.063 1.4E-06 54.3 7.2 92 182-276 9-105 (302)
291 PF14561 TPR_20: Tetratricopep 95.1 0.13 2.9E-06 45.3 8.5 77 463-539 6-85 (90)
292 COG2976 Uncharacterized protei 95.1 1.1 2.3E-05 45.1 15.6 79 448-542 37-119 (207)
293 KOG0985 Vesicle coat protein c 95.0 11 0.00023 46.4 26.0 188 477-676 1102-1317(1666)
294 KOG2714 SETA binding protein S 95.0 0.064 1.4E-06 59.1 7.7 90 184-277 13-110 (465)
295 PF10345 Cohesin_load: Cohesin 95.0 9 0.0002 45.5 26.4 178 478-667 403-606 (608)
296 KOG1310 WD40 repeat protein [G 94.9 0.087 1.9E-06 59.4 8.4 83 462-544 391-477 (758)
297 PF14561 TPR_20: Tetratricopep 94.9 0.21 4.5E-06 44.0 9.3 76 590-665 8-85 (90)
298 PF05843 Suf: Suppressor of fo 94.9 0.39 8.3E-06 51.2 13.1 84 589-672 55-141 (280)
299 COG2909 MalT ATP-dependent tra 94.8 9.4 0.0002 46.2 25.1 204 449-667 422-647 (894)
300 KOG1585 Protein required for f 94.8 0.9 2E-05 47.2 14.7 134 381-541 69-219 (308)
301 PF13176 TPR_7: Tetratricopept 94.8 0.031 6.7E-07 40.3 3.1 33 606-638 1-33 (36)
302 PF04781 DUF627: Protein of un 94.7 0.091 2E-06 48.0 6.7 86 584-669 10-110 (111)
303 KOG3824 Huntingtin interacting 94.5 0.085 1.8E-06 56.0 6.7 72 609-680 121-193 (472)
304 PF13174 TPR_6: Tetratricopept 94.5 0.059 1.3E-06 37.2 4.0 33 605-637 1-33 (33)
305 PF08424 NRDE-2: NRDE-2, neces 94.5 1.3 2.8E-05 48.3 16.1 30 606-635 156-185 (321)
306 COG2909 MalT ATP-dependent tra 94.4 14 0.00031 44.7 25.3 229 350-580 420-687 (894)
307 PF10345 Cohesin_load: Cohesin 94.4 15 0.00032 43.7 31.4 304 377-685 53-463 (608)
308 PF13374 TPR_10: Tetratricopep 94.3 0.066 1.4E-06 38.9 4.0 32 638-669 2-33 (42)
309 KOG1310 WD40 repeat protein [G 94.3 0.12 2.7E-06 58.2 7.7 89 589-677 393-484 (758)
310 KOG2471 TPR repeat-containing 94.2 0.97 2.1E-05 50.9 14.3 92 604-695 283-402 (696)
311 PF05843 Suf: Suppressor of fo 94.1 0.91 2E-05 48.4 13.8 84 462-545 53-140 (280)
312 COG3914 Spy Predicted O-linked 94.1 1.1 2.4E-05 51.6 14.7 88 460-547 82-177 (620)
313 COG3914 Spy Predicted O-linked 93.7 1.1 2.5E-05 51.5 14.0 52 596-649 128-185 (620)
314 KOG1724 SCF ubiquitin ligase, 93.7 0.29 6.2E-06 48.0 8.1 92 189-283 13-128 (162)
315 COG4976 Predicted methyltransf 93.3 0.23 5.1E-06 50.9 7.0 74 614-687 5-79 (287)
316 PF14853 Fis1_TPR_C: Fis1 C-te 93.2 0.29 6.4E-06 38.8 6.1 36 607-642 4-39 (53)
317 PF08424 NRDE-2: NRDE-2, neces 93.2 2.9 6.4E-05 45.5 16.1 158 464-668 4-184 (321)
318 KOG4507 Uncharacterized conser 92.6 0.28 6.2E-06 56.0 7.2 93 580-672 616-710 (886)
319 PF03931 Skp1_POZ: Skp1 family 92.3 0.64 1.4E-05 37.9 7.1 56 184-244 3-59 (62)
320 COG4976 Predicted methyltransf 92.2 0.22 4.8E-06 51.0 5.1 49 462-510 12-60 (287)
321 COG2912 Uncharacterized conser 92.1 0.66 1.4E-05 48.9 8.8 58 590-647 201-258 (269)
322 COG4941 Predicted RNA polymera 92.1 2.1 4.5E-05 46.3 12.4 125 495-645 272-406 (415)
323 KOG3824 Huntingtin interacting 91.7 0.56 1.2E-05 50.0 7.6 58 462-519 133-191 (472)
324 PF13374 TPR_10: Tetratricopep 91.6 0.29 6.3E-06 35.4 4.1 29 480-508 3-31 (42)
325 KOG4507 Uncharacterized conser 90.9 0.88 1.9E-05 52.2 8.6 121 502-678 202-324 (886)
326 PF11207 DUF2989: Protein of u 90.8 2.8 6E-05 42.5 11.2 82 576-658 112-198 (203)
327 PF07079 DUF1347: Protein of u 90.6 35 0.00076 38.7 25.4 65 614-682 472-539 (549)
328 PF07721 TPR_4: Tetratricopept 90.3 0.35 7.5E-06 32.3 3.0 25 639-663 2-26 (26)
329 PF12862 Apc5: Anaphase-promot 90.0 1.2 2.6E-05 39.3 7.1 56 615-670 9-73 (94)
330 KOG0529 Protein geranylgeranyl 90.0 8.3 0.00018 43.0 14.9 178 462-683 46-241 (421)
331 PF10516 SHNi-TPR: SHNi-TPR; 89.7 0.47 1E-05 35.0 3.6 29 480-508 2-30 (38)
332 PF09613 HrpB1_HrpK: Bacterial 89.6 2.8 6.2E-05 40.9 9.9 65 590-654 30-94 (160)
333 PF04910 Tcf25: Transcriptiona 89.5 12 0.00026 41.5 16.1 156 470-643 31-232 (360)
334 COG2912 Uncharacterized conser 89.0 1.4 3E-05 46.5 7.9 69 610-678 187-256 (269)
335 PF09986 DUF2225: Uncharacteri 88.4 8.1 0.00017 39.7 12.8 97 491-638 89-199 (214)
336 KOG2396 HAT (Half-A-TPR) repea 88.3 3.3 7.1E-05 47.1 10.5 83 590-672 91-174 (568)
337 KOG0511 Ankyrin repeat protein 88.3 0.17 3.7E-06 54.8 0.6 86 182-272 150-236 (516)
338 PF09613 HrpB1_HrpK: Bacterial 88.0 5.6 0.00012 38.9 10.7 62 611-672 17-78 (160)
339 PF10579 Rapsyn_N: Rapsyn N-te 88.0 1.6 3.4E-05 37.5 6.1 63 607-669 9-74 (80)
340 PF10516 SHNi-TPR: SHNi-TPR; 87.8 0.68 1.5E-05 34.1 3.3 32 638-669 1-32 (38)
341 COG3629 DnrI DNA-binding trans 87.2 3.8 8.2E-05 43.7 9.8 89 604-706 153-241 (280)
342 KOG3616 Selective LIM binding 87.1 10 0.00022 45.0 13.6 38 273-310 462-502 (1636)
343 PF07079 DUF1347: Protein of u 86.5 65 0.0014 36.7 22.0 51 487-537 470-520 (549)
344 KOG0985 Vesicle coat protein c 86.3 18 0.00039 44.6 15.4 158 384-547 1105-1314(1666)
345 PF10255 Paf67: RNA polymerase 85.9 1.1 2.4E-05 50.1 5.3 106 417-544 124-231 (404)
346 KOG3364 Membrane protein invol 85.7 6.8 0.00015 37.3 9.5 67 480-546 33-105 (149)
347 PRK13184 pknD serine/threonine 85.5 50 0.0011 41.2 19.5 95 449-547 482-587 (932)
348 PF01466 Skp1: Skp1 family, di 85.5 1.7 3.7E-05 37.1 5.2 34 250-283 11-44 (78)
349 COG5201 SKP1 SCF ubiquitin lig 85.0 4 8.8E-05 38.1 7.5 95 184-283 4-123 (158)
350 PF10579 Rapsyn_N: Rapsyn N-te 84.7 5.4 0.00012 34.4 7.6 59 479-537 6-68 (80)
351 KOG0546 HSP90 co-chaperone CPR 84.7 0.9 1.9E-05 49.4 3.7 54 590-643 295-348 (372)
352 PF07721 TPR_4: Tetratricopept 84.5 1.2 2.6E-05 29.6 3.0 26 604-629 1-26 (26)
353 TIGR02561 HrpB1_HrpK type III 84.4 4.3 9.2E-05 39.3 7.7 65 590-654 30-94 (153)
354 PF09986 DUF2225: Uncharacteri 84.3 8 0.00017 39.7 10.3 47 462-508 142-194 (214)
355 KOG3840 Uncharaterized conserv 84.0 1.6 3.6E-05 46.2 5.1 85 183-268 97-185 (438)
356 KOG0546 HSP90 co-chaperone CPR 84.0 1.2 2.6E-05 48.5 4.2 117 388-513 227-343 (372)
357 COG4649 Uncharacterized protei 84.0 18 0.00039 36.1 11.8 56 388-443 63-122 (221)
358 KOG3783 Uncharacterized conser 83.5 42 0.00091 38.8 16.3 208 462-672 250-525 (546)
359 PF10602 RPN7: 26S proteasome 83.1 13 0.00027 37.0 10.9 99 383-506 36-140 (177)
360 KOG0890 Protein kinase of the 82.6 2E+02 0.0044 39.1 26.8 313 388-704 1388-1784(2382)
361 PF10373 EST1_DNA_bind: Est1 D 82.5 3.9 8.5E-05 42.7 7.5 61 623-683 1-62 (278)
362 KOG2300 Uncharacterized conser 82.1 93 0.002 35.8 17.9 154 384-544 324-517 (629)
363 COG4649 Uncharacterized protei 81.9 56 0.0012 32.7 14.3 54 491-544 70-126 (221)
364 COG3014 Uncharacterized protei 81.8 38 0.00081 37.1 14.2 57 480-545 126-182 (449)
365 PF12862 Apc5: Anaphase-promot 81.2 5.7 0.00012 35.0 6.9 53 393-445 8-71 (94)
366 PF10373 EST1_DNA_bind: Est1 D 81.1 5.5 0.00012 41.6 8.0 61 464-524 1-62 (278)
367 KOG3807 Predicted membrane pro 81.1 74 0.0016 34.8 16.0 186 430-639 199-397 (556)
368 PRK15180 Vi polysaccharide bio 80.9 12 0.00027 42.4 10.6 164 492-682 302-469 (831)
369 TIGR02561 HrpB1_HrpK type III 80.7 16 0.00035 35.3 10.1 56 617-672 23-78 (153)
370 PF08631 SPO22: Meiosis protei 80.3 84 0.0018 33.3 17.5 161 490-666 4-185 (278)
371 PF00244 14-3-3: 14-3-3 protei 80.2 43 0.00094 34.8 14.1 193 482-702 4-225 (236)
372 PF15015 NYD-SP12_N: Spermatog 78.6 8.2 0.00018 43.1 8.3 21 424-444 185-205 (569)
373 KOG1839 Uncharacterized protei 78.4 13 0.00028 46.8 10.8 155 385-540 934-1127(1236)
374 PF10602 RPN7: 26S proteasome 78.1 25 0.00054 34.9 11.1 91 480-572 37-133 (177)
375 COG4455 ImpE Protein of avirul 77.6 30 0.00066 35.7 11.4 59 488-546 10-69 (273)
376 KOG2715 Uncharacterized conser 77.6 19 0.00042 35.3 9.5 95 183-281 22-121 (210)
377 KOG3364 Membrane protein invol 76.6 8.3 0.00018 36.8 6.6 75 604-678 32-112 (149)
378 KOG0890 Protein kinase of the 76.0 2.6E+02 0.0057 38.2 21.5 101 386-486 1673-1796(2382)
379 PF07720 TPR_3: Tetratricopept 76.0 7.5 0.00016 28.3 4.9 30 515-544 4-35 (36)
380 PRK11619 lytic murein transgly 74.5 2E+02 0.0044 34.6 25.3 285 385-674 35-381 (644)
381 KOG2396 HAT (Half-A-TPR) repea 73.6 18 0.00038 41.5 9.4 50 591-640 126-176 (568)
382 KOG1538 Uncharacterized conser 73.4 80 0.0017 37.4 14.5 148 388-545 637-806 (1081)
383 PF11207 DUF2989: Protein of u 73.2 1.1E+02 0.0025 31.1 14.6 52 479-531 141-197 (203)
384 COG3629 DnrI DNA-binding trans 73.2 14 0.00031 39.5 8.2 63 479-541 153-216 (280)
385 cd02682 MIT_AAA_Arch MIT: doma 72.7 20 0.00043 30.6 7.4 22 390-411 13-34 (75)
386 cd02682 MIT_AAA_Arch MIT: doma 72.5 14 0.00031 31.5 6.5 39 425-486 16-54 (75)
387 PF15015 NYD-SP12_N: Spermatog 72.2 9.3 0.0002 42.7 6.7 103 389-506 182-289 (569)
388 PF07720 TPR_3: Tetratricopept 71.5 10 0.00022 27.6 4.7 30 640-669 3-34 (36)
389 PF04910 Tcf25: Transcriptiona 70.6 1.8E+02 0.0039 32.3 16.6 165 506-679 33-234 (360)
390 KOG4151 Myosin assembly protei 70.3 12 0.00026 44.7 7.5 92 420-511 58-159 (748)
391 KOG2041 WD40 repeat protein [G 67.4 2.7E+02 0.0059 33.6 17.1 143 377-538 790-936 (1189)
392 PRK15180 Vi polysaccharide bio 66.2 26 0.00056 39.9 8.5 154 394-547 300-463 (831)
393 KOG1778 CREB binding protein/P 65.7 3.9 8.5E-05 44.4 2.2 125 184-312 29-155 (319)
394 COG4455 ImpE Protein of avirul 65.7 53 0.0012 34.0 10.0 96 613-708 10-119 (273)
395 COG1747 Uncharacterized N-term 63.2 3E+02 0.0064 32.1 20.9 229 266-510 29-290 (711)
396 PRK13184 pknD serine/threonine 61.9 58 0.0012 40.7 11.4 61 590-651 539-599 (932)
397 KOG1839 Uncharacterized protei 61.6 94 0.002 39.6 13.0 160 483-667 936-1121(1236)
398 KOG0276 Vesicle coat complex C 61.4 1.1E+02 0.0024 36.0 12.6 47 646-702 729-776 (794)
399 cd02683 MIT_1 MIT: domain cont 61.0 29 0.00063 29.7 6.3 10 429-438 20-29 (77)
400 KOG0686 COP9 signalosome, subu 60.7 1.4E+02 0.003 33.7 12.7 136 349-506 114-256 (466)
401 PF04212 MIT: MIT (microtubule 60.7 17 0.00036 30.0 4.7 32 381-412 3-34 (69)
402 COG3947 Response regulator con 60.7 24 0.00052 37.9 6.8 56 483-538 283-339 (361)
403 PHA02537 M terminase endonucle 60.2 69 0.0015 33.4 10.0 22 524-545 190-211 (230)
404 COG5191 Uncharacterized conser 59.9 8.8 0.00019 41.4 3.4 50 592-641 129-179 (435)
405 KOG1464 COP9 signalosome, subu 59.7 1.4E+02 0.003 32.0 12.0 158 383-540 65-259 (440)
406 KOG2041 WD40 repeat protein [G 59.7 2.5E+02 0.0053 33.9 15.0 51 609-663 827-877 (1189)
407 PF12739 TRAPPC-Trs85: ER-Golg 59.0 2E+02 0.0044 32.4 14.5 26 610-635 376-401 (414)
408 PHA02537 M terminase endonucle 57.3 45 0.00098 34.7 8.1 22 617-638 191-212 (230)
409 PF09670 Cas_Cas02710: CRISPR- 57.3 2E+02 0.0044 32.1 14.0 58 387-444 135-198 (379)
410 KOG2422 Uncharacterized conser 57.0 2.3E+02 0.005 33.4 14.1 147 397-544 252-451 (665)
411 KOG2723 Uncharacterized conser 56.7 33 0.00071 35.4 6.9 94 181-278 7-106 (221)
412 PRK11619 lytic murein transgly 56.5 4.3E+02 0.0093 31.8 20.6 169 491-692 324-513 (644)
413 COG5191 Uncharacterized conser 55.7 17 0.00038 39.2 4.8 81 592-672 95-176 (435)
414 KOG1258 mRNA processing protei 55.6 4.1E+02 0.0089 31.4 19.8 199 461-678 313-520 (577)
415 KOG4279 Serine/threonine prote 55.0 31 0.00067 41.3 7.0 34 617-650 379-412 (1226)
416 smart00101 14_3_3 14-3-3 homol 53.8 2.9E+02 0.0063 29.0 19.6 200 482-702 4-227 (244)
417 COG1747 Uncharacterized N-term 53.1 4.3E+02 0.0094 30.9 18.7 196 382-607 98-296 (711)
418 KOG4151 Myosin assembly protei 53.1 24 0.00052 42.3 5.9 101 381-481 51-163 (748)
419 KOG2581 26S proteasome regulat 52.8 2E+02 0.0043 32.5 12.3 141 480-637 125-280 (493)
420 PF11846 DUF3366: Domain of un 52.2 45 0.00098 33.2 7.1 46 590-636 131-176 (193)
421 PF04190 DUF410: Protein of un 51.7 3.1E+02 0.0068 28.9 17.9 132 476-620 87-244 (260)
422 KOG2114 Vacuolar assembly/sort 51.1 1.2E+02 0.0025 37.1 11.0 121 521-662 377-514 (933)
423 cd02681 MIT_calpain7_1 MIT: do 50.3 27 0.00059 29.8 4.3 31 382-412 5-35 (76)
424 PF12854 PPR_1: PPR repeat 49.5 37 0.0008 24.0 4.3 30 508-537 3-32 (34)
425 cd02678 MIT_VPS4 MIT: domain c 48.6 32 0.0007 29.0 4.6 32 381-412 4-35 (75)
426 cd02678 MIT_VPS4 MIT: domain c 48.5 64 0.0014 27.2 6.4 31 399-442 3-33 (75)
427 smart00745 MIT Microtubule Int 48.3 65 0.0014 26.9 6.4 10 429-438 22-31 (77)
428 KOG4814 Uncharacterized conser 48.2 1.9E+02 0.0041 34.5 11.7 24 522-545 364-387 (872)
429 KOG4014 Uncharacterized conser 47.6 1.8E+02 0.0038 29.5 10.0 173 494-683 8-214 (248)
430 KOG0687 26S proteasome regulat 47.5 3.2E+02 0.0068 30.1 12.6 100 414-540 103-202 (393)
431 KOG2114 Vacuolar assembly/sort 46.3 27 0.00058 42.3 4.9 77 613-700 343-422 (933)
432 PF11846 DUF3366: Domain of un 46.1 45 0.00098 33.2 6.0 52 494-545 126-177 (193)
433 cd02680 MIT_calpain7_2 MIT: do 45.1 32 0.00069 29.4 3.9 31 382-412 5-35 (75)
434 KOG4279 Serine/threonine prote 44.7 1.6E+02 0.0034 35.8 10.5 75 383-457 201-286 (1226)
435 PF04053 Coatomer_WDAD: Coatom 44.4 1.3E+02 0.0029 34.4 10.0 121 395-535 273-396 (443)
436 smart00745 MIT Microtubule Int 44.4 42 0.0009 28.2 4.6 33 380-412 5-37 (77)
437 TIGR02710 CRISPR-associated pr 44.1 1.1E+02 0.0024 34.3 9.0 148 520-689 138-297 (380)
438 PF09670 Cas_Cas02710: CRISPR- 43.1 1.3E+02 0.0029 33.5 9.7 121 421-542 137-271 (379)
439 KOG4521 Nuclear pore complex, 42.7 8.6E+02 0.019 31.3 17.0 132 382-529 919-1071(1480)
440 cd02680 MIT_calpain7_2 MIT: do 42.6 36 0.00078 29.1 3.9 34 398-444 2-35 (75)
441 cd02683 MIT_1 MIT: domain cont 42.1 41 0.0009 28.7 4.2 31 382-412 5-35 (77)
442 cd02677 MIT_SNX15 MIT: domain 41.3 43 0.00093 28.5 4.2 33 380-412 3-35 (75)
443 PF10255 Paf67: RNA polymerase 40.7 49 0.0011 37.3 5.7 59 481-540 124-192 (404)
444 COG2015 Alkyl sulfatase and re 40.7 55 0.0012 37.4 6.0 40 585-624 466-506 (655)
445 cd02656 MIT MIT: domain contai 40.6 54 0.0012 27.4 4.7 31 382-412 5-35 (75)
446 KOG4814 Uncharacterized conser 39.6 1.7E+02 0.0036 34.9 9.6 80 462-541 371-457 (872)
447 PF05053 Menin: Menin; InterP 39.6 1.7E+02 0.0038 34.2 9.7 59 383-441 277-344 (618)
448 KOG1538 Uncharacterized conser 39.0 1.8E+02 0.0038 34.8 9.7 47 617-666 786-832 (1081)
449 PF05053 Menin: Menin; InterP 38.8 57 0.0012 38.0 5.8 45 462-506 296-345 (618)
450 PF04053 Coatomer_WDAD: Coatom 38.6 6.6E+02 0.014 28.8 16.7 12 426-437 329-340 (443)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 38.4 2.4E+02 0.0052 26.3 9.2 94 346-442 24-126 (126)
452 KOG1938 Protein with predicted 38.1 4.9E+02 0.011 32.5 13.7 233 421-709 182-441 (960)
453 TIGR03504 FimV_Cterm FimV C-te 38.1 93 0.002 23.7 5.1 23 484-506 4-26 (44)
454 PF09797 NatB_MDM20: N-acetylt 37.9 1E+02 0.0022 34.0 7.7 58 589-650 202-259 (365)
455 cd02677 MIT_SNX15 MIT: domain 37.6 37 0.00081 28.9 3.2 15 652-666 20-34 (75)
456 KOG2581 26S proteasome regulat 37.4 1.3E+02 0.0028 34.0 8.0 72 377-448 203-280 (493)
457 PF14863 Alkyl_sulf_dimr: Alky 37.3 2.3E+02 0.005 27.2 8.9 43 504-546 62-104 (141)
458 cd02684 MIT_2 MIT: domain cont 37.2 57 0.0012 27.7 4.3 31 382-412 5-35 (75)
459 KOG0276 Vesicle coat complex C 36.2 2.1E+02 0.0046 33.9 9.8 66 469-542 631-696 (794)
460 PF04212 MIT: MIT (microtubule 36.1 64 0.0014 26.5 4.4 25 608-632 9-33 (69)
461 COG5536 BET4 Protein prenyltra 35.8 5.5E+02 0.012 27.8 12.0 133 462-610 91-233 (328)
462 COG5107 RNA14 Pre-mRNA 3'-end 34.6 7.8E+02 0.017 28.5 17.5 217 467-689 290-555 (660)
463 cd02656 MIT MIT: domain contai 34.6 1.4E+02 0.003 24.9 6.3 16 427-442 18-33 (75)
464 PF12854 PPR_1: PPR repeat 34.3 72 0.0016 22.4 3.8 27 478-504 6-32 (34)
465 cd02679 MIT_spastin MIT: domai 34.0 57 0.0012 28.2 3.8 24 610-633 14-37 (79)
466 PF01239 PPTA: Protein prenylt 33.7 81 0.0018 21.5 3.9 26 466-491 4-29 (31)
467 PF00244 14-3-3: 14-3-3 protei 33.6 5.6E+02 0.012 26.6 13.4 36 599-634 160-199 (236)
468 PF13041 PPR_2: PPR repeat fam 31.9 1.8E+02 0.004 21.7 6.1 30 479-508 3-32 (50)
469 KOG1464 COP9 signalosome, subu 31.8 97 0.0021 33.1 5.7 75 617-692 204-293 (440)
470 cd02681 MIT_calpain7_1 MIT: do 31.7 60 0.0013 27.7 3.6 27 607-633 9-35 (76)
471 KOG1920 IkappaB kinase complex 31.3 5.4E+02 0.012 33.0 12.6 158 468-666 924-1092(1265)
472 KOG3807 Predicted membrane pro 31.0 7.7E+02 0.017 27.3 17.8 59 478-540 272-335 (556)
473 TIGR03504 FimV_Cterm FimV C-te 30.8 94 0.002 23.7 4.1 30 642-672 3-32 (44)
474 KOG3783 Uncharacterized conser 30.8 9.4E+02 0.02 28.3 19.0 72 475-546 444-525 (546)
475 smart00386 HAT HAT (Half-A-TPR 30.3 1.2E+02 0.0026 19.8 4.4 20 620-639 3-22 (33)
476 KOG4422 Uncharacterized conser 30.1 8.6E+02 0.019 28.0 12.9 68 388-455 527-601 (625)
477 PF11817 Foie-gras_1: Foie gra 30.1 3E+02 0.0065 28.6 9.3 76 362-437 154-240 (247)
478 cd02679 MIT_spastin MIT: domai 29.2 77 0.0017 27.4 3.8 33 494-540 4-36 (79)
479 COG5187 RPN7 26S proteasome re 29.1 5.1E+02 0.011 28.2 10.5 111 394-507 86-220 (412)
480 PF13041 PPR_2: PPR repeat fam 28.2 1.9E+02 0.0042 21.7 5.6 37 510-546 1-39 (50)
481 smart00671 SEL1 Sel1-like repe 28.0 1.1E+02 0.0025 20.8 4.0 29 639-667 2-34 (36)
482 PF08238 Sel1: Sel1 repeat; I 27.4 1.2E+02 0.0026 21.2 4.1 16 398-413 23-38 (39)
483 COG4259 Uncharacterized protei 26.3 1.7E+02 0.0036 26.7 5.4 47 404-450 58-107 (121)
484 COG2015 Alkyl sulfatase and re 26.3 8.2E+02 0.018 28.5 12.0 119 442-580 392-514 (655)
485 PF01239 PPTA: Protein prenylt 25.7 1.5E+02 0.0033 20.1 4.2 24 625-648 4-27 (31)
486 COG3947 Response regulator con 25.4 1.2E+02 0.0027 32.7 5.2 44 462-505 296-339 (361)
487 KOG2997 F-box protein FBX9 [Ge 24.9 1.1E+02 0.0024 33.4 4.8 35 641-675 22-57 (366)
488 smart00299 CLH Clathrin heavy 24.2 3E+02 0.0066 25.3 7.4 73 462-535 24-105 (140)
489 PF14863 Alkyl_sulf_dimr: Alky 24.0 1.9E+02 0.0041 27.7 5.9 53 603-655 69-121 (141)
490 PF13226 DUF4034: Domain of un 23.7 5.4E+02 0.012 27.6 9.8 33 462-494 116-148 (277)
491 PF14929 TAF1_subA: TAF RNA Po 23.6 1.3E+03 0.027 27.4 13.7 214 476-703 130-372 (547)
492 PF15469 Sec5: Exocyst complex 23.6 2.7E+02 0.0059 27.3 7.3 24 522-545 96-119 (182)
493 PF07219 HemY_N: HemY protein 23.0 5.4E+02 0.012 23.1 8.5 49 382-430 58-108 (108)
494 KOG1463 26S proteasome regulat 22.9 1.1E+03 0.023 26.3 20.8 183 483-687 132-333 (411)
495 KOG2422 Uncharacterized conser 22.7 3.1E+02 0.0066 32.4 8.0 40 609-648 347-387 (665)
496 cd09248 BRO1_Rhophilin_1 Prote 21.9 1.2E+03 0.025 26.3 14.7 18 652-669 299-316 (384)
497 PF12925 APP_E2: E2 domain of 21.8 2.9E+02 0.0064 28.0 6.9 82 481-571 100-184 (193)
498 KOG4459 Membrane-associated pr 21.4 1.1E+02 0.0023 35.0 4.0 87 607-702 136-222 (471)
499 PF02064 MAS20: MAS20 protein 20.9 1.7E+02 0.0038 27.3 4.8 32 483-514 67-98 (121)
500 COG5536 BET4 Protein prenyltra 20.1 1.1E+03 0.025 25.5 15.0 160 471-650 58-239 (328)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=323.16 Aligned_cols=297 Identities=16% Similarity=0.081 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~- 458 (714)
.++++-+||++...+|+..+||..|++|++++ ..+||+++|+||-..+.++.|+..|.+|+.+.|+.+.+|-|.+-.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 46889999999999999999999999999995 567899999999999999999999999999999877777665431
Q ss_pred ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
|..+-||..|++||+++|+++.||+|+|+++.+.|+..||...|++||.+.|+ +++.+|+|.+|.++|.+++|++.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 23399999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
|.++++..|... ++.+.++.+...+...++| +.+|..||.++|..++++.|+|+++
T Consensus 377 y~~al~v~p~~a------aa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 377 YLKALEVFPEFA------AAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHhhChhhh------hhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHH
Confidence 999999999994 4555566555666666666 8899999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc--CCC-CCc
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS--SQD-SSC 690 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~--~~~-~~~ 690 (714)
..+|+..+|+.+|.+|+.++|..+|||.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-|++-++-=- ..| ..-
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999998876321 122 122
Q ss_pred hhhHHHHHHHhh
Q 005106 691 SSTVVSLLEDAL 702 (714)
Q Consensus 691 ~~~~~~~~~~~~ 702 (714)
-.++++..++-+
T Consensus 513 ~~kl~sivrdql 524 (966)
T KOG4626|consen 513 MKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHHH
Confidence 345666666554
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=321.11 Aligned_cols=334 Identities=15% Similarity=0.096 Sum_probs=271.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
....+.+.++++.+++ ..++.++|.++..+|+.++|..+|..||.++| ..+...+|.++-.+|+..+|.+.|.+|
T Consensus 134 ~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 134 DALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 4444555555555544 56777888888888888888888888888866 566777888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
|+..|.++-+|.++|-. |....||..|++|+.|||++++||+|+|++|.+.+++++|+..|.||+.+.|+ ..++-
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 88888777777776532 33378888888888888888888888888888888888888888888888886 56666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh-HHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccccc
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR-VAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~-~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~d~ 587 (714)
|.|.+|.++|+.+-||..|+++|+++|++..++.+ +.|....|.+.+.++-+.+ ||++.+|+........+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 77888888888888888888888888888665543 3366666666666655444 56667777777777777
Q ss_pred c-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 588 G-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 588 ~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+ |...|..||+..|..+.+++|+|.++..+|..++|+.+|+.|++++|..++++.|+|..|-.+|+.++|++.|++||.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 7 788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 667 MKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 667 i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++|.|+ |+.|.|-+.-||+==| .-|+--++|||=
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~----~AI~sY~~aLkl 485 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIP----EAIQSYRTALKL 485 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcH----HHHHHHHHHHcc
Confidence 999999 9999999999987544 357777777774
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=300.60 Aligned_cols=219 Identities=19% Similarity=0.264 Sum_probs=196.1
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+.+.+|||++.+++++|+|||+||||+||||++||+++++|+.+.+|+|. +|++.+|..+++|+|||++. ++.+|
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~-i~~~n 106 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLE-ISEDN 106 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEE-echHh
Confidence 6689999999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (714)
|++||.+|++||++.+++.|++||.++++ ++||+++..+|+.|++++|......++.+||.+ .|+.+++.+
T Consensus 107 Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 107 VQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 99999999999999999999999999995 899999999999999999999999888888765 788999999
Q ss_pred HhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHh---hhhHHHHHHHH-HHHHHHHHhccchHHH
Q 005106 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLES---AETDRQRLLAF-HQLGCVRLLRKEYDEA 402 (714)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~---a~~~lq~~~A~-~~lG~~~~~~g~y~eA 402 (714)
++++++++ |..|+.++.++++||++|...|..++.++++. +++ ++.++.+.+.. ..+.....++.-..+|
T Consensus 186 ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea 259 (571)
T KOG4441|consen 186 LLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA 259 (571)
T ss_pred hccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 99999995 88999999999999999988889999999999 554 35555554433 2344445556667777
Q ss_pred H
Q 005106 403 E 403 (714)
Q Consensus 403 ~ 403 (714)
.
T Consensus 260 ~ 260 (571)
T KOG4441|consen 260 K 260 (571)
T ss_pred H
Confidence 6
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=295.77 Aligned_cols=190 Identities=14% Similarity=0.239 Sum_probs=170.7
Q ss_pred ccCCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCCCCcCC-cceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~-~~~f~aHr~VLAa~S~yF~amF~~~~~Es~-~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|+ |++|+|||.||||+|+||++||+++|+|+. +.+|+|. ++++++|+.||+|+|||+ ++.
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~ 93 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS 93 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence 567889999999997 899999999999999999999999999875 7899998 599999999999999996 568
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+||++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+++.+||.. .|+.+++
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l 172 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL 172 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence 9999999999999999999999999999995 899999999999999999999999999998865 6888999
Q ss_pred HHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 005106 325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a 376 (714)
.++|++++.. .|..|+.+++++++||++|...|. +..+||++ +|++
T Consensus 173 ~~lL~~d~~l----~v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~ 218 (557)
T PHA02713 173 FDIISTNDNV----YLYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ 218 (557)
T ss_pred HHHhcccccc----CCCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence 9999998731 388899999999999999976554 45688887 6654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=2.6e-27 Score=276.88 Aligned_cols=283 Identities=13% Similarity=0.059 Sum_probs=236.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++++.++ ...+.++|.++...|++++|+..|++||+++|. .++..+|.++..+|++++|+.++
T Consensus 142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666777777766553 356788999999999999999999999998654 47888999999999999998877
Q ss_pred HHHHhcCC------------------------------C---------------------------------cHHHHHHH
Q 005106 439 NSVISSVT------------------------------P---------------------------------LGWMYQER 455 (714)
Q Consensus 439 ~~aI~~~p------------------------------~---------------------------------~~~ay~~r 455 (714)
..+....+ . .+.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 65543221 1 11111222
Q ss_pred Hh-------cCChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 456 SL-------YCEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 456 g~-------~~~~~eAl~d~~kAi~L---dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
|. .+.+++|+..|++|+++ +|+.+.+|.++|.++..+|++++|+..|+++|+++|+ +..+..+|.++..
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 12458899999999986 5889999999999999999999999999999999997 7888899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+.+|+++++++|++.. +...++.+....+++++| +.+|+++++++|.+.
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A------------------~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPD------IYYHRAQLHFIKGEFAQA------------------GKDYQKSIDLDPDFI 433 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCccCH
Confidence 99999999999999999999843 444555555556666666 889999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.+++++|.++.++|++++|+..++++++..|+++++++++|.++..+|++++|+..|++|+.++|..
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=5.3e-30 Score=290.84 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=155.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||++++|+ +|+|||+||||+||||++||+++|+|+.+ +|++...++++++|+.||+|+|||++. ++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~n 92 (480)
T PHA02790 16 LSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHN 92 (480)
T ss_pred HHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-Eeccc
Confidence 4567889999998765 79999999999999999999999999965 566531159999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCCh--HH-----HHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ER-----VVEI 327 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~--~~-----v~~l 327 (714)
|+++|.+|++||++.+++.|++||.+.++ ++||++++.+|..|+++.|.+.+.+++.+||.+.... ++ +.++
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~l 171 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLI 171 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHh
Confidence 99999999999999999999999999995 8999999999999999999999999999998875432 22 4678
Q ss_pred hccccccchhhhccchhhhHHHHHHHhhhc
Q 005106 328 FSHANRQHRSIMVGLASFSLYCLLSEVAMN 357 (714)
Q Consensus 328 l~~~~~~~r~~~v~~~~~~~~~~l~~V~~d 357 (714)
|++|+++ |..|+.+++++++||+++
T Consensus 172 Lssd~L~-----v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 172 LESDELN-----VPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred cccccCC-----CccHHHHHHHHHHHHHhh
Confidence 8899884 889999999999999985
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=2.3e-26 Score=268.91 Aligned_cols=297 Identities=14% Similarity=0.084 Sum_probs=209.9
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh------------------------
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------------------------ 416 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------------------------ 416 (714)
+.+..+..++.++...++. ..+++.+|.++...|+|++|+.+|.+++.+++..
T Consensus 175 ~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l 251 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEIL 251 (615)
T ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666656554433 5688999999999999999999887665432100
Q ss_pred --------hHhhHHHH--------------------------H----------HHhCCHHHHHHHHHHHHhc---CCCcH
Q 005106 417 --------SIAGLARL--------------------------G----------YIKGHKLWAYEKLNSVISS---VTPLG 449 (714)
Q Consensus 417 --------a~~~lg~~--------------------------~----------~~~G~~~~A~~~~~~aI~~---~p~~~ 449 (714)
++..+|.. + ...+++++|++.|++++.. .|+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 252 ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 00011110 0 1135788999999999986 47788
Q ss_pred HHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 450 WMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 450 ~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
.+|..+|.+ ++.++|+.+|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ++.++.+|.++..
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888753 66799999999999999999999999999999999999999999999999996 8889999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+.+|+++++++|++... ...++.+....+++++| +..+++++..+|.++
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~------~~~la~~~~~~g~~~eA------------------~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFS------HIQLGVTQYKEGSIASS------------------MATFRRCKKNFPEAP 467 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHH------HHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCh
Confidence 999999999999999999998542 22333333333333333 556666666666666
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWILYD-TSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~ly~-~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
.+++++|.++..+|++++|+..|++|++++|++...+ ++.+.+++. .|++++|+..+++|+.++|++. ++..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 6666666666666666666666666666666543322 223333433 4666666666666666666665 5555
Q ss_pred HHHHhhcc
Q 005106 677 KAYALADS 684 (714)
Q Consensus 677 ~~~~~~~~ 684 (714)
.|.++...
T Consensus 548 la~~~~~~ 555 (615)
T TIGR00990 548 MAQLLLQQ 555 (615)
T ss_pred HHHHHHHc
Confidence 55555443
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=2.7e-28 Score=280.52 Aligned_cols=186 Identities=15% Similarity=0.221 Sum_probs=173.1
Q ss_pred CCCCCccEEEEE--cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 177 ~~~~~~DV~l~v--~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
.++.+|||+|+| +|++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 478899999998 9999999999999999999999999997 5789998 5 999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (714)
+++||.+|++|+++.|++.|++||.+.++ .+||+.++.+|..+++..|.+.|.+++..||.. .|+.+.+.+
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 99999999999999999999999999995 899999999999999999999999999988753 678899999
Q ss_pred HhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 005106 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (714)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a 376 (714)
+|+++++. +..|+.++.++++|+.++...|..++.+||++ +|++
T Consensus 157 ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~ 200 (534)
T PHA03098 157 ILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT 200 (534)
T ss_pred HhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence 99999984 88999999999999999988888888999988 6644
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=2.9e-24 Score=252.61 Aligned_cols=314 Identities=11% Similarity=-0.032 Sum_probs=258.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
.....+++..+.-.+ ....+++++|.+....|++++|+..|+++++.+| ..++..+|.++...|++++|+..+++
T Consensus 59 ~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 59 DVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred chhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555443333 2367889999999999999999999999999854 56788899999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-HHH
Q 005106 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-LEC 514 (714)
Q Consensus 441 aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~-~~~ 514 (714)
+++++|++..++..++.. ++.++|+..|.+++.++|+++.++.+.+ .+...|++++|+..++++++.+| . ...
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 999999999998888653 6669999999999999999999998765 48899999999999999999876 3 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+...+.++...|++++|+..|+++++++|++.. +...++.+....+++++|. ..|+..++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------~~~~Lg~~l~~~G~~~eA~--------------~~A~~~~~ 274 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAA------LRRSLGLAYYQSGRSREAK--------------LQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCchhhH--------------HHHHHHHH
Confidence 344677889999999999999999999999843 3333444444444444321 02488999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-H
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-A 673 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a 673 (714)
++++++|+++.++.++|.++.++|++++|+..+++|++++|++++++.++|.++..+|++++|++.|+++++.+|+.. +
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+...|.++.... --..-+..++.|++.
T Consensus 355 ~~~~a~al~~~G----~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAG----KTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHHh
Confidence 555688886543 344556667777765
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.2e-22 Score=241.83 Aligned_cols=334 Identities=16% Similarity=0.119 Sum_probs=257.0
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+....+++++.+..+.. ...+..++..+...|++++|+..++++++.. +..++..+|.++...|++++|+..|
T Consensus 548 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555665544433322 3455678888888899999999998888763 4556778888999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
+++++.+|+.+.++...+. .++.++|+..|+++++.+|++..++..++.++...|++++|+..++++.+..|+ +.
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 9999888888777777654 356688999999999999999999999999999999999999999988888885 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD 585 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~ 585 (714)
.+..+|.++...|++++|+..|+++++.+|+.....+.+.+....+......+.+++ ...+..+.......+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 777788888999999999999999999988874433333222222222222222211 223334444444445
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
+.. |+..|+++++.+|.++.++++.|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+|++++|+..|+++
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555 7889999999999999999999999999999 77999999999999999999999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
++++|+.. ++++.|.++...+- -...+++++++|
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGR----KAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 99999766 89888888887643 445566666655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=7.4e-24 Score=249.12 Aligned_cols=284 Identities=14% Similarity=-0.000 Sum_probs=247.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++...|+. ..++..+|.++...|++++|+..|++|++++| ..++..+|.++...|++++|+..+
T Consensus 91 ~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4556677777777665544 45778999999999999999999999999854 456788999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHh---cCChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 439 NSVISSVTPLGWMYQERSL---YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~---~~~~~eAl~d~~kAi~LdP-~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
.+++...|+.+.++..... .++.++|+..|+++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +.
T Consensus 168 ~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 9999999998877755422 3566999999999999987 44455566789999999999999999999999996 78
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 514 CLELRFCFFLALEDYQA----ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~----Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++|.++..+|++++ |+..|+++++++|++. .+...++.+....+++++|
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA------------------ 303 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKA------------------ 303 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHH------------------
Confidence 88899999999999996 8999999999999983 4555556666666777777
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..++++++++|.++.++.++|.++.++|++++|+..|+++++.+|+++..+...|.++..+|++++|++.|+++++++|
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 78899999999999999999999999999999999999999999999998888899999999999999999999999988
Q ss_pred CH
Q 005106 670 SF 671 (714)
Q Consensus 670 ~~ 671 (714)
+.
T Consensus 384 ~~ 385 (656)
T PRK15174 384 SH 385 (656)
T ss_pred hh
Confidence 83
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.1e-23 Score=262.22 Aligned_cols=307 Identities=11% Similarity=-0.069 Sum_probs=222.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh----------------HhhHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS----------------IAGLARL 424 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a----------------~~~lg~~ 424 (714)
+.+.....++++++..++. ..+++.+|.++..+|++++|+..|++|++.+|... ...+|.+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4556677777766654433 56788999999999999999999999998854321 1234778
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH------------
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS------------ 488 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~------------ 488 (714)
+...|++++|+..|+++++.+|+...++..+|.. ++.++|+..|++|++++|++..++.+++.+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 8899999999999999999999988888887653 566999999999999999998887666554
Q ss_pred ------------------------------HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 489 ------------------------------LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 489 ------------------------------l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+...|++++|+..|+++++++|+ +..++.++.+|..+|++++|+..|++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44679999999999999999996 77788899999999999999999999
Q ss_pred HHhhCCCchhhh-hhHHHHH----------HH---------------------------HHHHHhhhhhhHH--------
Q 005106 538 ILTLSPDYRMFE-GRVAASQ----------LH---------------------------MLVREHIDNWTIA-------- 571 (714)
Q Consensus 538 al~L~P~~~~~~-~~~~a~~----------~~---------------------------~~l~~~~~~~~~A-------- 571 (714)
+++++|++.... ..+.... .. ........+.++|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999985421 1110000 00 0000011111111
Q ss_pred ---HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 572 ---DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 572 ---~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
..++.+.+.....+++. |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|++..++..+|++
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 12223333333334555 66677777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 005106 648 LYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 648 ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+..+|++++|++.|++++++.|+
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCcc
Confidence 77777777777777777776543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=2.4e-21 Score=230.73 Aligned_cols=313 Identities=13% Similarity=0.061 Sum_probs=196.2
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+.....++++++..+.. ..+++++|.++...|++++|+..|+++++.+ +..++..++.++...|++++|+..+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334445555544433322 3456677777777777777777777777663 34456667777777777777777777
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
+++..+|.....+...+. .++.++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777777766555555433 244578888888888888888888888888888888888888888888888885 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH---------------HHHHhhhh
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA---------------DCWLQLYD 579 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------------~~~~~l~~ 579 (714)
+...+.++..+|++++|+..|+++++.+|++..... ....+....+++++| ..|..++.
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI------GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHH
Confidence 777778888888888888888888888887643211 111111111111111 11222222
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
.....+++. |+..++++++..|.+ ..+++.|.++.++|++++|+..++++++.+|++..+++++|.++..+|++++|+
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 222233333 555666666666655 455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 659 RKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
..|++++.+.|++. +++..|+++...
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 66666666666555 555555555443
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.5e-22 Score=250.24 Aligned_cols=307 Identities=11% Similarity=-0.009 Sum_probs=234.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--------------
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------------- 450 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------------- 450 (714)
..+|.++...|++++|+..|++|++.+| ..++..+|.++..+|++++|+..|+++++.+|+...
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 3569999999999999999999999854 567889999999999999999999999999987542
Q ss_pred HHHHHH----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH-------
Q 005106 451 MYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR------- 518 (714)
Q Consensus 451 ay~~rg----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R------- 518 (714)
.+..+| ..++.++|+..|++|++++|+++.++.++|.++..+|++++|+..|++|++++|+ ..++..+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 112222 1245599999999999999999999999999999999999999999999999996 5544333
Q ss_pred -----------------------------------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 005106 519 -----------------------------------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (714)
Q Consensus 519 -----------------------------------~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~ 563 (714)
+.++...|++++|+..|+++++++|++.... ..++.+..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~------~~LA~~~~ 506 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT------YRLAQDLR 506 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHH
Confidence 2345578999999999999999999985422 12222222
Q ss_pred hhhhhhHHHHHHhhhhc---------------cccccccc-hHHH-----------------------------------
Q 005106 564 HIDNWTIADCWLQLYDR---------------WSSVDDIG-SLSV----------------------------------- 592 (714)
Q Consensus 564 ~~~~~~~A~~~~~l~~~---------------~~~~~d~~-al~~----------------------------------- 592 (714)
...++++|...++-.-. +...++.. |+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 22222222211111000 00001100 1111
Q ss_pred -----HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 593 -----IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 593 -----~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.++..|.++.+++.+|.++.++|++++|+..|+++++++|++++++.++|.++...|++++|++.|++++++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 123355789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 668 KRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 668 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.|+.. +.+..|.++.... -...-+++++.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP 699 (1157)
T ss_pred CCCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence 99876 7788888776433 23444555555554
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.9e-22 Score=243.74 Aligned_cols=266 Identities=11% Similarity=-0.036 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh-hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...+++++|.++.. ++.++|+..|.+++...|.. ...++|.++...|++++|+..|.+++...|... .+...|.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHHHHH
Confidence 45688999999987 89999999999999886543 233457777899999999999999877755533 3444432
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
.++.++|+..|++|++++|++...+..++..+..+|++++|+..|++|++++|++..+.++|.++.++|++++|+..|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566999999999999999999999988888888999999999999999999998888999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++. .+....+.+.....++++| +..++++++++|+++.+++++|.++..
T Consensus 634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999994 3445555555555666666 789999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
+|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|.--|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence 999999999999999999999999999999999999999999999999999998773
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.6e-22 Score=216.12 Aligned_cols=299 Identities=14% Similarity=0.088 Sum_probs=248.1
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
.+.+..+.++-+.|+-++..|+|++||++|++||++.|. -.|.+++-+|...|++.+-+++.++|++++|+...+++.
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 344556788899999999999999999999999999665 346789999999999999999999999999999999988
Q ss_pred HHh----cCChhHHHHHHHH------------------------------HHh--cCCC---------------------
Q 005106 455 RSL----YCEGDKRWEDLDK------------------------------ATA--LDPT--------------------- 477 (714)
Q Consensus 455 rg~----~~~~~eAl~d~~k------------------------------Ai~--LdP~--------------------- 477 (714)
|+. ++..++|+.|.+- -+. -.|.
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 842 2222333332110 000 0000
Q ss_pred -----------------------------------------------C---------hHHHHHHHHHHHhcCCHHHHHHH
Q 005106 478 -----------------------------------------------L---------SYPYMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 478 -----------------------------------------------~---------~~ay~~rg~~l~~l~r~~eAl~~ 501 (714)
+ +.++..||.-+.-.|++-+|..+
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 56778889999999999999999
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 502 INRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 502 ~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
|+++|+++|. +..|..|+.+|....+-++-..+|++|..+||+|+. .++.++.+.-.++++++|
T Consensus 349 ~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A--------- 413 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEA--------- 413 (606)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHH---------
Confidence 9999999996 455777999999999999999999999999999954 666777788888899999
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+++|+++++++|.++.+|..++.++.|+++++++|..++.+++.-|+-+|.+..-|.+|.++++|++|+..
T Consensus 414 ---------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 414 ---------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred ---------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC------HH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 661 AEESIQMKRS------FE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
|++||.+.|. .. .+-.||..+.--. +--.--++||+.|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAI 530 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHH
Confidence 9999999998 44 6777777776532 22233445555554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.7e-21 Score=213.87 Aligned_cols=292 Identities=16% Similarity=0.034 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~----~~ay~~rg~ 457 (714)
...+.+|..+...|++++|+..|.++++.+|. .++..+|.++...|++++|+..+++++...+.. ..++...|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999999999999654 457789999999999999999999988853221 233444432
Q ss_pred ----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-H-----HHHHHHHHHHhcCC
Q 005106 458 ----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E-----CLELRFCFFLALED 527 (714)
Q Consensus 458 ----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~-----~~~~R~~~~~~lgd 527 (714)
.+++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.. . .+..++.++...|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 1455999999999999999999999999999999999999999999999988752 1 23457888999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhH
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVL 606 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~-~~~ 606 (714)
+++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+|.+ ..+
T Consensus 196 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 196 LDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLSEV 251 (389)
T ss_pred HHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHHHH
Confidence 9999999999999999973 3444555555566666666 78899999999987 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHhhccC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF-LKAYALADSS 685 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~-~~~~~~~~~~ 685 (714)
+..++.++..+|++++|+..+++++++.|+.. .+..+|.++...|++++|+..++++++..|+...+. +-+..++...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 88999999999999999999999999999875 459999999999999999999999999999999665 3444443221
Q ss_pred CCCCchhhHHHHHHHhh
Q 005106 686 QDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 686 ~~~~~~~~~~~~~~~~~ 702 (714)
..-....+.++|+.+
T Consensus 331 --~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 331 --EGRAKESLLLLRDLV 345 (389)
T ss_pred --CccchhHHHHHHHHH
Confidence 122333455555544
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-21 Score=211.37 Aligned_cols=318 Identities=15% Similarity=0.161 Sum_probs=250.3
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+..+.....++.|-++. .+.|-|+.-+|...|++++-+++..+||+++|.+ ++..++.++-.+|++++|+.+.+
T Consensus 131 Y~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 345556666666644432 5777899999999999999999999999998877 46778889999999999987764
Q ss_pred ------------------HHHh----------------------------------------------------------
Q 005106 440 ------------------SVIS---------------------------------------------------------- 443 (714)
Q Consensus 440 ------------------~aI~---------------------------------------------------------- 443 (714)
+.+.
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 0000
Q ss_pred -c------------------------CC--------CcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHH
Q 005106 444 -S------------------------VT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA 486 (714)
Q Consensus 444 -~------------------------~p--------~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg 486 (714)
. .. ..+.++..||- .|..-+|..||+++|.|+|.+...|..||
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a 367 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHH
Confidence 0 00 01334444442 24457888999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHh
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREH 564 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~~~~l~~~ 564 (714)
.+|+++++.++-..+|++|..+||+ ++.|+.||.++.-+++|++|+.||+++++|+|+++..+.+.. +.+..+.+...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999995 999999999999999999999999999999999976665544 44444455554
Q ss_pred hhhhhHH--------HHHHhhhhccccccccc-hHHHHHHHHHhCCC------ChhHHHHHHHHHHH-cCChHHHHHHHH
Q 005106 565 IDNWTIA--------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP------KGVLYFRQSLLLLR-LNCPEAAMRSLQ 628 (714)
Q Consensus 565 ~~~~~~A--------~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~------~~~~~~~~g~~L~~-lg~~eeAl~~~~ 628 (714)
-..++++ +++.=..+.+-+..+++ |+..|+.|+++.|. ++-.+..+|.++.+ .+++.+|+..++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 4444443 33333334444446666 78899999999999 88888899988776 678889999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 629 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 629 ~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
+|++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+.++-.- -+.+|.|++
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E-~~~a~s~ae 581 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE-MVHAYSLAE 581 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999887652 233444443
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=6.1e-21 Score=230.80 Aligned_cols=289 Identities=11% Similarity=-0.049 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-h---h-hHhhHHHHHHHhCC-------------------------H-
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-I---Y-SIAGLARLGYIKGH-------------------------K- 431 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~---~-a~~~lg~~~~~~G~-------------------------~- 431 (714)
..++.+++....+.|++++|...|+++....+ . . ...+++.+|..++. .
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 45667888899999999999999999987421 1 2 22366666665544 2
Q ss_pred --HHHHHHHHHHHhcCCC--cHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 432 --LWAYEKLNSVISSVTP--LGWMYQERSLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 432 --~~A~~~~~~aI~~~p~--~~~ay~~rg~~---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
..+...+.+++...|. .+.+|+++|.+ ++.++|+..|.+++...|++. .+..+|.++...|++++|+..|++
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2345566677777788 88899888754 444789999999999999754 455667777899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH--------HHHHHHHHHHhhhhhhHHHHHHh
Q 005106 505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA--------ASQLHMLVREHIDNWTIADCWLQ 576 (714)
Q Consensus 505 AL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~--------a~~~~~~l~~~~~~~~~A~~~~~ 576 (714)
++...|....+...|.++...|++++|++.|+++++++|++........ ...-...++..++.-..++.|..
T Consensus 535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8887777666777888899999999999999999999998754322111 00111111222221112445666
Q ss_pred hhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 577 LYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 577 l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
++......++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 666666666666 7888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCHH
Q 005106 656 EGLRKAEESIQMKRSFE 672 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~~ 672 (714)
+|+..|++|++++|++.
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 88888888888888874
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.6e-21 Score=213.77 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=222.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC--
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC-- 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~-~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~-- 459 (714)
...++|..|++.++|++|.+.|+.+=++.|... +-.... ++..+.+..-. ..-...|..+|+.+..|...|++.
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls-~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS-YLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-HHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 346788889999999999998888755543221 111122 33333333322 122457788999999999998753
Q ss_pred --ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 --EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 --~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.+.|+..|.+||.+||++++||.-+|-=+.....+|.|...|++||..+|. +.+|+-.|.+|.++|+++.|+-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
+|++++|.+. ....-.|...+..++.++| |..|++|+-+||.++...|.+|.+|.-
T Consensus 514 kA~~INP~ns------vi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 514 KAVEINPSNS------VILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred hhhcCCccch------hHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 9999999983 3444455666666777777 889999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++++|+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|-=|..++|.=+
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999744
No 21
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.88 E-value=8.9e-23 Score=214.06 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=159.6
Q ss_pred CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--CCCHHH
Q 005106 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--GVTPNL 254 (714)
Q Consensus 177 ~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~--~i~~~~ 254 (714)
-+...+||+|+|++++|+|||+|||++|.|||+|++|||.|+.+..|.+++ ...++|+.+|+|||||++. .+..+.
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~ 117 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDI 117 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHH
Confidence 356689999999999999999999999999999999999999999999995 7799999999999999987 234678
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChHHHHHHhcccccc
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQ 334 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~ 334 (714)
+++.|..|++|++..|..+-++||...+. .+|+..+.+.|..++.++|.+.|++|+.+|-.+.|.++.+..+ +.+.++
T Consensus 118 lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L-Sk~sL~ 195 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL-SKDSLK 195 (620)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh-hHHHHH
Confidence 89999999999999999999999999996 6999999999999999999999999999888776666655543 233332
Q ss_pred chh---hhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhh
Q 005106 335 HRS---IMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAE 377 (714)
Q Consensus 335 ~r~---~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~ 377 (714)
+.+ ....++--.|.++.+|-+++.+..+ ..+++ ++++|.
T Consensus 196 e~l~RDsFfApE~~IFlAv~~W~~~Nske~~---k~~~~-~VRLPL 237 (620)
T KOG4350|consen 196 ELLARDSFFAPELKIFLAVRSWHQNNSKEAS---KVLLE-LVRLPL 237 (620)
T ss_pred HHHhhhcccchHHHHHHHHHHHHhcCchhhH---HHHHH-HHhhhh
Confidence 222 2255666779999999998864322 23333 366664
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=2.5e-20 Score=199.15 Aligned_cols=183 Identities=16% Similarity=0.081 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+.+|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ ..++.++|.++...|++++|+.+|+++++
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555666666666666666666666666666666666666666666665 55566666666666666666666666666
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++.. +. .. ..+.....++++| +..+.+++...+. ..|. .+.+...+|+.
T Consensus 161 ~~P~~~~---~~-~~---~~l~~~~~~~~~A------------------~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 161 DDPNDPY---RA-LW---LYLAESKLDPKQA------------------KENLKQRYEKLDK--EQWG-WNIVEFYLGKI 212 (296)
T ss_pred hCCCCHH---HH-HH---HHHHHccCCHHHH------------------HHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence 6666531 00 00 0001111222222 4455554433221 2222 34555556655
Q ss_pred HHH--H----HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHH
Q 005106 621 EAA--M----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SFE 672 (714)
Q Consensus 621 eeA--l----~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~-~~~ 672 (714)
.++ + ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 332 2 222333466777777788888888888888888888888888775 665
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=1.2e-20 Score=201.49 Aligned_cols=236 Identities=13% Similarity=0.023 Sum_probs=182.5
Q ss_pred ccchHHHHHHHHHHHhc---c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH
Q 005106 396 RKEYDEAEHLFEAAVNA---G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~---~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl 465 (714)
.++.+.++..+.++|.. + .+..++.+|.++...|++++|+..|+++++++|+++.+|.++|.+ +++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35678899999999863 2 245688899999999999999999999999999999999999863 6779999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL-SPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L-~P~ 544 (714)
..|++|++++|++..+|.++|.++...|++++|+..|+++++++|+.........+....+++++|+..|++++.. +|+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999999999999999999999999999999996332122223456788999999999877654 444
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+. +...+.. ...+++.++.+.. +...++++++++|..+++|+++|.++.++|++++|+
T Consensus 199 ~~---~~~~~~~-------~lg~~~~~~~~~~------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 199 QW---GWNIVEF-------YLGKISEETLMER------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred cc---HHHHHHH-------HccCCCHHHHHHH------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 31 1111111 1222222211000 122345667888999999999999999999999999
Q ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHhcCC
Q 005106 625 RSLQLARQHAA-SDHERLVYEGWILYDTSH 653 (714)
Q Consensus 625 ~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~ 653 (714)
..|++|++++| ++.+..+-+..+....++
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999996 888877766665554444
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.6e-19 Score=196.64 Aligned_cols=279 Identities=17% Similarity=0.108 Sum_probs=227.6
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc------hhhHhhHHHHHHHhCCHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH------IYSIAGLARLGYIKGHKLWA 434 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~------~~a~~~lg~~~~~~G~~~~A 434 (714)
..+.....++++++..++. ..++..+|.++...|++++|+..++++++..+ ..++..+|.++...|++++|
T Consensus 50 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred ChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3456777888877665533 45778899999999999999999999988632 24577889999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 435 YEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~-----~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
+..|.++++..|....++..++. .+++++|+..|+++++.+|... ..|.++|.++.+.|++++|+..|+++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999998887777766643 2556999999999999999864 36788999999999999999999999
Q ss_pred HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
++.+|+ ...+..+|.++...|++++|+..|+++++.+|++.. .+...+..+....+++++|
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~A------------- 268 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS-----EVLPKLMECYQALGDEAEG------------- 268 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH-----HHHHHHHHHHHHcCCHHHH-------------
Confidence 999997 777888999999999999999999999999998731 1222233333334444444
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh--cCCHHHHHHHHH
Q 005106 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAE 662 (714)
Q Consensus 585 ~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~--~G~~eeAl~~ye 662 (714)
+..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+.. .|+.++|+..++
T Consensus 269 -----~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 269 -----LEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred -----HHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 77899999999987655 8999999999999999999999999999998766555554432 569999999888
Q ss_pred HHHh
Q 005106 663 ESIQ 666 (714)
Q Consensus 663 ~Ai~ 666 (714)
+.++
T Consensus 343 ~~~~ 346 (389)
T PRK11788 343 DLVG 346 (389)
T ss_pred HHHH
Confidence 7775
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.4e-19 Score=213.48 Aligned_cols=311 Identities=10% Similarity=-0.033 Sum_probs=213.3
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.+...+++++...++. .. ++.+|.++...|++++|+..|++++++.| ..++..+|.++...|+.+.|++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5667778888877665544 23 77889999999999999999999999854 446667888888888888888887
Q ss_pred HHHHhcCCCc-------HHHHHHHHhc-------CCh---hHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCC
Q 005106 439 NSVISSVTPL-------GWMYQERSLY-------CEG---DKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQN 494 (714)
Q Consensus 439 ~~aI~~~p~~-------~~ay~~rg~~-------~~~---~eAl~d~~kAi~LdP~~~~-------ay~~rg~~l~~l~r 494 (714)
+++.. +|+. +.+...+..+ +++ ++|++.|+++++..|.++. ++..+..++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 76665 4432 1111111100 112 6677777777765433332 22333445567778
Q ss_pred HHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh----hhhh-HHHHHHHHHHHHhhhh
Q 005106 495 VEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM----FEGR-VAASQLHMLVREHIDN 567 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~----~~~~-~~a~~~~~~l~~~~~~ 567 (714)
+++|+..|+++++..|. |. .....+.+|..+|++++|+..|+++++.+|.+.. .... ..+....+....+.+.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 88888888888777542 32 2223466788888888888888888877776511 0000 0011111111111111
Q ss_pred hh-----------------------HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 568 WT-----------------------IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 568 ~~-----------------------~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
.+ ..+.+..+...+...++.. |+..++++++..|.++.+++++|.++...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 11 1111222222333334444 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
+..+++|++++|++.++++.+|.++..+|++++|.+.++++++..|+.. +..+
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 4443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8.4e-19 Score=210.07 Aligned_cols=309 Identities=11% Similarity=-0.008 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..++..+|..+...|++++|+..|+++|+++| ..++.++|.++...|++++|+..++++++.+|+++. +..+|.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 45678899999999999999999999999854 456788999999999999999999999999999998 888775
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-------------------------------------
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL------------------------------------- 499 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl------------------------------------- 499 (714)
.++.++|+..|++|++++|+++.++..+|.++...++.++|+
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 366799999999999999999999999999998777766544
Q ss_pred ---------HHHHHHHhc---CCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhC---CCchhhhhhHHHHHHHH
Q 005106 500 ---------AEINRILGF---KLALECLE-----LRFCFFLALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHM 559 (714)
Q Consensus 500 ---------~~~~kAL~l---~P~~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~---P~~~~~~~~~~a~~~~~ 559 (714)
+.++++++. +|+....+ .+..++...|++++|+..|+++++.+ |++.... .+
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--------la 279 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--------VA 279 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--------HH
Confidence 444455543 23211111 12334578899999999999999996 4442211 12
Q ss_pred HHHHhhhhhhHHHHH-------------------Hhhhhccccccccc-hHHHHHHHHHhCCCC---------------h
Q 005106 560 LVREHIDNWTIADCW-------------------LQLYDRWSSVDDIG-SLSVIYQMLESDAPK---------------G 604 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~-------------------~~l~~~~~~~~d~~-al~~~~qaL~l~P~~---------------~ 604 (714)
.+....+++++|..+ ..++......++++ |+..++++++.+|.. .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 222223333333222 22222223335555 778999999998832 3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.++..+|.++...|++++|+..++++++..|++++++.++|.++...|++++|++.+++|++++|++. .++.+|++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999976 88888887665
Q ss_pred cCCCCCchhhHHHHHHHhhcC
Q 005106 684 SSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~ 704 (714)
.. --.....+++++++-
T Consensus 440 ~~----~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQ----EWRQMDVLTDDVVAR 456 (765)
T ss_pred hC----CHHHHHHHHHHHHHh
Confidence 44 234445555555543
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=6e-20 Score=190.69 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=183.9
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~l 525 (714)
.+|..+..||++ .+|+..|..||++||++..+++.||.+|..+|+-..|+.++.++|+++|++.++ ..||.+++++
T Consensus 43 ElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 467888888777 999999999999999999999999999999999999999999999999996555 5599999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCCh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKG 604 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~ 604 (714)
|.+++|++||+++|.-+|++-. ...+...+..+.++.....++.. |..-+|.. ++..+++.|++.||++
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~~~~e~~~l~~ql~s-------~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGL---VLEAQSKLALIQEHWVLVQQLKS-------ASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcch---hHHHHHHHHhHHHHHHHHHHHHH-------HhcCCchhhHHHHHHHHHhcCcchh
Confidence 9999999999999999998621 12233333444444444444432 22224445 6789999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++..|+.++..-|.+..|+.+.+.|-++..||.+.++..+.++|..|+.+.++..-++-++++|+--
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 28
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=2.7e-19 Score=192.58 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILG 507 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~ 507 (714)
+++.+|+..+..++... ++.++|+..+++||+++|++..+|.+||.++..+| ++++|+..++++|+
T Consensus 34 ~~~~~a~~~~ra~l~~~-------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 34 PEFREAMDYFRAVYASD-------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 45566666666555443 34478888888888888888888888888888888 57888888888888
Q ss_pred cCCC-HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 508 FKLA-LECLELRFCFFLALEDY--QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~--e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
.+|+ +.+|+.|++++..+|+. ++++..+++++++||++.. +...++-+....+.|+++
T Consensus 101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~ee------------- 161 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDE------------- 161 (320)
T ss_pred HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHH-------------
Confidence 8885 78888888888888874 6788888888888888843 444444444455556655
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCC
Q 005106 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSH 653 (714)
Q Consensus 585 ~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~ 653 (714)
+..++++|+.||.+..+|+++|.++..+ |.. ++++....++|.++|+|..+++++|+++.. +++
T Consensus 162 -----L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 162 -----LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred -----HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 7888899999999999999999998876 333 467888889999999999999999999988 567
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
..+|+...++++..+|... |--..+-.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7889999999999887654 33333333333
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-18 Score=191.14 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=84.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~ 461 (714)
..|+..+..|+|+.|+..|..||.++|... |.++..+|..+|++.+|+++-.+.++++|.++.+|...|. .+++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 468888899999999999999999966543 4578889999999999999999999999999999988874 4677
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
++|+..|.+.++.+|++...+.+|+.++
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999998865555555544
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.7e-19 Score=199.67 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=184.8
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 005106 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASS 488 (714)
Q Consensus 413 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~ 488 (714)
+.+.+|-.+|+++-.+++++.|++.|.+||.++|+++.+|-.+|. ...+|+|...|++|+..||.+..||+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 356678889999999999999999999999999999999998874 2455999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 489 l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
|+++++++.|.-.|+||+++||. .......|.++.++|+.++|++-|++|+.+||.++ .....++.+.-...+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLGR 572 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhcc
Confidence 99999999999999999999996 56666789999999999999999999999999994 355556666666666
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+++| +..+++.-++-|..+..++..|.++-++|..+-|+--+--|++++|.-+++
T Consensus 573 ~~ea------------------l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 573 YVEA------------------LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hHHH------------------HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 6666 889999999999999999999999999999999999999999999997764
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=2.4e-18 Score=198.99 Aligned_cols=180 Identities=12% Similarity=-0.050 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.++|+..+++|++++|+++.+|..+|.++..+|++++|+..|++|++++|+ +..++.+|.++..+|++++|+..|++++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999997 7888899999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg 618 (714)
+++|++..+. .....+.....++++| +..++++++.. |+++.++.++|.++..+|
T Consensus 400 ~l~P~~~~~~------~~~~~~~~~~g~~eeA------------------~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 400 KLDPTRAAAG------ITKLWITYYHTGIDDA------------------IRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred hcCCCChhhH------HHHHHHHHhccCHHHH------------------HHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 9999985321 1111111222334444 77889999875 889999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
++++|...+++++...|++..+...++.++..+|+ +|.+.+++.++
T Consensus 456 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 456 KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 99999999999999999999999999999998884 66665555444
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=1.2e-18 Score=201.45 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l---------~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
++|+..|++|++++|+++.+|.++|.++..+ +++++|+..+++|++++|+ +.++..+|.++..+|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 7999999999999999999999999987744 3489999999999999996 88888999999999999999
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 532 l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
+..|++|++++|++.. +...++.+....+++++| +..++++++++|.++.+++.++
T Consensus 358 ~~~~~~Al~l~P~~~~------a~~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISAD------IKYYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999954 444455555566666666 8899999999999999888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
.++..+|++++|+..++++++.+ |+++.++.++|.++..+|++++|.+.+++.....|... +..+-+-.+....
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 88999999999999999999885 88999999999999999999999999999988888866 5555544444433
No 33
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=5.8e-18 Score=182.28 Aligned_cols=220 Identities=12% Similarity=0.006 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----C-ChhHHHHHHHHH
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C-EGDKRWEDLDKA 471 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~-~~~eAl~d~~kA 471 (714)
++|.+|..+|++++. ..++.++|+..++++|.++|++..+|..||.. + ..++++..++++
T Consensus 34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 355566555555433 33566677777777777777777777777542 2 247888888899
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNV--EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~--~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
++.+|++..+|.+||.++..+|+. ++++..++++|+++|. ..+|..|++++..+|++++|+.+++++|++||+|..
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s- 177 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS- 177 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-
Confidence 999999999999999888888874 6788888899999984 788888999888889999999999999999988833
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc-cc-chHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD-DI-GSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~-d~-~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~ee 622 (714)
+.+.++.+....... .... .. +.+..+.++|.++|.+..+|++++-++.. +++..+
T Consensus 178 -----AW~~R~~vl~~~~~l-------------~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 178 -----AWNQRYFVITRSPLL-------------GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred -----HHHHHHHHHHhcccc-------------ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 222222222111000 0000 01 13678889999999999999999999998 566788
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
|++.+.+++..+|+++.|+-.+.-++..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 34
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=5e-17 Score=169.09 Aligned_cols=278 Identities=11% Similarity=0.087 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH---
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS--- 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg--- 456 (714)
.++++|.++.+|+..|+-..|+.++.+.|+++|.. |-.-+|.++.++|.+++|..+|+..|.-+|+.+.....+.
T Consensus 71 ~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~ 150 (504)
T KOG0624|consen 71 NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150 (504)
T ss_pred hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 35778888999999999999999999988886544 4556788889999999999999999888886544332211
Q ss_pred ----------h------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 457 ----------L------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 457 ----------~------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
+ -|+...|++..++.++..|=++..|..|+.+|...|....||.+.+.|-.+..+ .+.++--.
T Consensus 151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 0 135578888888999999999999999999999999999999999999988775 77778788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
.++...||.+.++..++..+++||++.- |-...........+..+.+-.++-+ |+ +.++-.+..+.
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~t------------~cle~ge~vlk 297 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-WT------------ECLEAGEKVLK 297 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HH------------HHHHHHHHHHh
Confidence 8899999999999999999999999743 1111222222222222222111110 11 12667888999
Q ss_pred hCCCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 599 SDAPKGVLYFR----QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 599 l~P~~~~~~~~----~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|.-+...+| .-.|...-+.+.||++-...+|+.+|+|++++--++.++.-.-.||.|+..|++|.+.++|..
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99986655443 334455578899999999999999999999999999999999999999999999999999876
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.8e-18 Score=182.85 Aligned_cols=255 Identities=16% Similarity=0.105 Sum_probs=107.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc---CC
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CE 460 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~----~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---~~ 460 (714)
.++.++...|++++|.+.+++++.. +....|..+|.+...+|+++.|+..|++++...+.....+.+...+ ++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5688999999999999999765533 2344566688899999999999999999999988877777666554 45
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--P-~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+++|+..+.++.+-.+ ++..+.....++...++++++...++++.+.. | ++..+..+|.++...|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5899998888888765 46777888889999999999999999988765 3 467788899999999999999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
|++++|++... .....-+.-..++.+++ ...+.+.....|.++.+|...|.++..+
T Consensus 172 al~~~P~~~~~------~~~l~~~li~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 172 ALELDPDDPDA------RNALAWLLIDMGDYDEA------------------REALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHH-TT-HHH------HHHHHHHHCTTCHHHHH------------------HHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHcCCCCHHH------HHHHHHHHHHCCChHHH------------------HHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 99999998432 22222122222233332 4456666667799999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|++++|+..++++++.+|+|+..+...|.+|...|+.++|+..+++++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999998764
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.7e-16 Score=177.07 Aligned_cols=307 Identities=15% Similarity=0.106 Sum_probs=237.9
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
.+.+..|.+++.......-..+..+|++|..+..+|+|++|..+|.+|++.+ +..+++|+|.+|..+|+...|...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 4566677778776665555567789999999999999999999999999983 3668899999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHhcC--------ChhHHHHHHHHHHhcCCCChHHH----------------------------
Q 005106 439 NSVISSVTPLGWMYQERSLYC--------EGDKRWEDLDKATALDPTLSYPY---------------------------- 482 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~~--------~~~eAl~d~~kAi~LdP~~~~ay---------------------------- 482 (714)
.+....+|++-....-.|..+ ..++|.....++++..|.++.+|
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999999998655554444321 12677777778888777776555
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHhc-CC--CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 483 ----------MYRASSLMTKQNVEAALAEINRILGF-KL--ALE--------CLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 483 ----------~~rg~~l~~l~r~~eAl~~~~kAL~l-~P--~~~--------~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+|.|..++.+|.+..|...|.+|+.. .| +.+ .-||++.++..+++++.|...|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 55666677788888888888888876 21 222 3588999999999999999999999999
Q ss_pred CCCchhhhhhHH----------------------------HHHHHHHHHHhhhhhhHHH-----------------HHHh
Q 005106 542 SPDYRMFEGRVA----------------------------ASQLHMLVREHIDNWTIAD-----------------CWLQ 576 (714)
Q Consensus 542 ~P~~~~~~~~~~----------------------------a~~~~~~l~~~~~~~~~A~-----------------~~~~ 576 (714)
.|+|...+.|.. +..+.|.+-.....|-.|. ..++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999987665543 3444443333333332221 2233
Q ss_pred hhhcc-------cccc-----cc-chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 577 LYDRW-------SSVD-----DI-GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 577 l~~~~-------~~~~-----d~-~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
|++.| ++.+ -+ .|++.|.++|..+|.|..+=+..|.+|..-|++.+|...+.+.++--.++.+++.|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 33322 2222 12 27889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 644 EGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 644 ~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
+|.|+..+|+|-.|++.|+..++.-
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998863
No 37
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.76 E-value=4.1e-18 Score=183.74 Aligned_cols=177 Identities=20% Similarity=0.300 Sum_probs=152.7
Q ss_pred cccCCCCCccEEEEEcC-----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC
Q 005106 174 SMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN 248 (714)
Q Consensus 174 ~~~~~~~~~DV~l~v~~-----~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~ 248 (714)
.|.+++..+||.|+||+ ..|||||.|||..|..|.+||++++.|+...+|.+++ +.|.+|..+|+|+|++.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYsdev~ 184 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYSDEVK 184 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhcchhh
Confidence 46788889999999974 5899999999999999999999999999889999995 9999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChH------
Q 005106 249 GVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDE------ 322 (714)
Q Consensus 249 ~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~------ 322 (714)
+..+++..+|.+|++|.++.|.+.|.+||...+.....++.+-+-|..++-++|+..|++++..++.+.|..+
T Consensus 185 -~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 185 -LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred -hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 9999999999999999999999999999999998666666666669999999999999999999988866644
Q ss_pred ----HHHHHhccccccchhhhccchhhhHHHHHHHhhhcCC
Q 005106 323 ----RVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (714)
Q Consensus 323 ----~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~ 359 (714)
.+++++.++.++ +. +...++++++|+.....
T Consensus 264 ~~~dt~~evl~r~~l~-----~~-e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 264 STRDTYEEVLRRDTLE-----AR-EFRLFEAALKWAEAECQ 298 (521)
T ss_pred hHHHHHHHHHhhcccc-----hh-HHHHHHHHHhhccCcch
Confidence 344444444442 22 55779999999977654
No 38
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-17 Score=177.04 Aligned_cols=281 Identities=16% Similarity=0.087 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
.+..+.+.-...+|......++|.+|+..|..||+..|.. .|.+++.++.+.|+++.|.-+.++.+++.|...+.+.+
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 3333445555678999999999999999999999995544 56678999999999999999999999999988777766
Q ss_pred HHhcCCh----hHHH---H---------HHHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 005106 455 RSLYCEG----DKRW---E---------DLDKATALD------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA- 511 (714)
Q Consensus 455 rg~~~~~----~eAl---~---------d~~kAi~Ld------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~- 511 (714)
-++.... .+|- . .+.....+- |....+-.-.+.+++.+|++++|+.+--.++.+++.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 6554211 1111 1 111222222 333345556788999999999999999999999995
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL 590 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al 590 (714)
.++++.||.++...++.+.|+..|+++++++|+.... ..+.-....+..-..+-+.+ -.-+.+. |-
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~----------fk~G~y~~A~ 269 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDA----------FKNGNYRKAY 269 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhH----------hhccchhHHH
Confidence 8999999999999999999999999999999998432 11222222222222222222 2224444 67
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+|..||.+||.+. .+|.||+.+..++|+..||+.+.+.|+.|+|..-.|+..+|.|...++.+++|+++|++|+.
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999875 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 005106 667 MKRS 670 (714)
Q Consensus 667 i~~~ 670 (714)
..-+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 8766
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-16 Score=173.57 Aligned_cols=270 Identities=14% Similarity=0.040 Sum_probs=225.7
Q ss_pred HHHHhccchHHHHHHHHHHHhccchhh---HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhH
Q 005106 391 CVRLLRKEYDEAEHLFEAAVNAGHIYS---IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK 463 (714)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~~~~a---~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~e 463 (714)
..+...++|.+-.+.++..++.+|-.. -..+| +++.+|+..+=+..=.+.+..+|+.+-.|+.-|.| +.+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 344566788998899999999864332 23455 78889998888888889999999988888888865 56699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
|...|.||+.+||++..+|...|.++.-.|..++|++.|.+|-++=|. ..-....|.=|..+++++-|..-|.+|+.+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999885 3334567888999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH----HhCCCC---hhHHHHHHHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML----ESDAPK---GVLYFRQSLLLL 615 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL----~l~P~~---~~~~~~~g~~L~ 615 (714)
|+++. ..+..|.+.-.-+.|.+|.- .|..++ +..+.. .-.+.|+|.++.
T Consensus 411 P~Dpl------v~~Elgvvay~~~~y~~A~~------------------~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 411 PSDPL------VLHELGVVAYTYEEYPEALK------------------YFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred CCcch------hhhhhhheeehHhhhHHHHH------------------HHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 99843 55566666666667777743 344444 233333 245899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
++|+++||+..||+||.+.|.+++.|-..|.++..+|+++.|+..|.+|+.|+|+.. +==+.+.++.|+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999997 7777779999943
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=2.3e-16 Score=157.26 Aligned_cols=186 Identities=16% Similarity=0.063 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++++.|+ ...+.+.+.++..+|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444445555555555556666666666666666666666666666554 44455555566666666666666666655
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
..+... ........+.+....+++++| ...++++++.+|.++.++..+|.++..+|++
T Consensus 128 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 128 DPLYPQ----PARSLENAGLCALKAGDFDKA------------------EKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred cccccc----chHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 422110 011111222222222222222 4456666666666667788899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++|+..+++++++.|++.+.++..+.++...|+.++|....++...+.|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999988887766644
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=8.5e-15 Score=163.49 Aligned_cols=284 Identities=12% Similarity=0.051 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-HHHHHHh-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQERSL- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-ay~~rg~- 457 (714)
+.......|...+..|+++.|.+...++.+..+. -++...|++...+|+++.|...+.++.+..|+... +...++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445567899999999999999999999888443 34555688999999999999999999998887642 2222222
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH---HHhcCCHH
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF---FLALEDYQ 529 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~-~~R~~~---~~~lgd~e 529 (714)
.+++++|++.+++..+..|+++.++.-.|.++.++|++++|+..+.+.++.++ ++..+ ..+..+ +...++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 24559999999999999999999999999999999999999999999998754 33322 222222 24556667
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH--
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-- 607 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~-- 607 (714)
+++..+.++.+..|+.. .....+......+....+++++| +..+++++...|.+....
T Consensus 243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~A------------------~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDSA------------------QEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHHH------------------HHHHHHHHhhCCCcccchhH
Confidence 77788999999888420 00122333333344444444444 889999999999998642
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCHHHHHHHHHHhhc
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCEEGLRKAE--ESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--ea~~~~G~~ly~~G~~eeAl~~ye--~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.-+.......++.++++..++++++..|+++ ..+..+||+++.+|++++|...+| ++++++|+.+.+..-|-++..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 3344444556888999999999999999999 899999999999999999999999 688899999987777777665
Q ss_pred cC
Q 005106 684 SS 685 (714)
Q Consensus 684 ~~ 685 (714)
..
T Consensus 383 ~g 384 (409)
T TIGR00540 383 AG 384 (409)
T ss_pred cC
Confidence 54
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=2.9e-15 Score=149.36 Aligned_cols=199 Identities=14% Similarity=0.014 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+++++|..+...|++++|+..|+++++.+| ..++..+|.++..+|++++|++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~----------------------- 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDS----------------------- 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-----------------------
Confidence 45667777777777888888887777777643 33455566666666665555554
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+++++++|++..++.++|.++...|++++|+..|++++...+ . ...+.++|.++...|++++|+..|++
T Consensus 88 -------~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 88 -------FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred -------HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555666666666666777777777777777777777776432 1 34455566677777777777777777
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++.+|++.. +....+.+....+++++| +..++++++..|.++..+...+.++...
T Consensus 161 ~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 161 ALQIDPQRPE------SLLELAELYYLRGQYKDA------------------RAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHhCcCChH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777776522 222333333334444444 5566667777777777777788888888
Q ss_pred CChHHHHHHHHHHHHhCC
Q 005106 618 NCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P 635 (714)
|+.++|.+..+.+.+..|
T Consensus 217 ~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 217 GDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred hhHHHHHHHHHHHHhhCc
Confidence 999988888887776654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-15 Score=162.25 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQ 453 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------~~~ay~ 453 (714)
+.-+-++.++....+.++|++.+++-+..+. .+.-...|.+.+.+.|+++|+..|+...+-+|- ..++++
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 3334566777777788888888888777743 333445778888899999999988888887762 222333
Q ss_pred HHHhcCChhHHHHHH-HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 454 ERSLYCEGDKRWEDL-DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 454 ~rg~~~~~~eAl~d~-~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
-+.. ..++..+ ..+..+|.--++.-.-.|+-|...++++.|+..|+|||++||+ ..+|..-|-=|.++++-..|
T Consensus 308 v~~~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 308 VKND----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHhh----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHH
Confidence 2211 1222222 3456666666666677788888888888888888888888886 56677777778888888888
Q ss_pred HHHHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 005106 532 LCDVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 532 l~d~~~al~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~ 609 (714)
+..|++|++++|.+ .+++|-+.++... +=.. ||=.|++|+++-|+++..|.-
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim--------------------------~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIM--------------------------KMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHh--------------------------cchHHHHHHHHHHHhcCCCchHHHHH
Confidence 88888888888854 4444444333322 1111 466889999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|.++.++|+.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||.+.|++=+.
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=5.9e-15 Score=170.30 Aligned_cols=311 Identities=13% Similarity=0.045 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
..++...+++.+.+|+|-.|+.+|.+||.++ .++.-.++|.+..++|+.+.|+..+.+|++++|....++..+|.+-
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 5667777888899999999999999999985 4556678888999999999999999999999999999998887541
Q ss_pred -------ChhHHHHHHHHHHhcCCCCh-------------------------------------HHHHHHHHHHHhcCCH
Q 005106 460 -------EGDKRWEDLDKATALDPTLS-------------------------------------YPYMYRASSLMTKQNV 495 (714)
Q Consensus 460 -------~~~eAl~d~~kAi~LdP~~~-------------------------------------~ay~~rg~~l~~l~r~ 495 (714)
.+..++..+.+|...+|.+| ..++.+|-.++.+|+|
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 22778888999999999985 4466677777777777
Q ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------
Q 005106 496 EAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------- 565 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-------- 565 (714)
++|...|-.+++.+|+. -.++-.|..|...|++++|+.+|+++++..|++.. +...+|.+....
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------tm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------TMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------HHHHHHhHHHhhhhhhHHHH
Confidence 77777777777777753 22334566777777777777777777777777642 222222222222
Q ss_pred -----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 566 -----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 566 -----------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
.....+++|+.+..-|-.-|-..+|..|..|+.+ .|--++..+|.|...+.+|.++.|...+..
T Consensus 398 ~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 2245566788887777777777788889988832 355678899999999999999999999999
Q ss_pred HHHh-----CCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHH
Q 005106 630 ARQH-----AASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLL 698 (714)
Q Consensus 630 Al~l-----~P~~~-----ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (714)
|+.. +++.+ -..||++.++-.++++++|-..|...++..|+|. +|.-.|--.-|++-+++.|.-+-..|
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 9988 33332 2489999999999999999999999999999999 77777744558888888876555444
Q ss_pred H
Q 005106 699 E 699 (714)
Q Consensus 699 ~ 699 (714)
+
T Consensus 558 ~ 558 (1018)
T KOG2002|consen 558 N 558 (1018)
T ss_pred h
Confidence 3
No 45
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=4.7e-17 Score=157.45 Aligned_cols=171 Identities=16% Similarity=0.287 Sum_probs=137.9
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC
Q 005106 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~ 251 (714)
+.+.+.|+|++|.++ ++.|++||.|||++|++++ |.++-.|.. .+..+. ++++++|...++||||++++ +.
T Consensus 60 L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk 133 (280)
T KOG4591|consen 60 LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FK 133 (280)
T ss_pred HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cc
Confidence 347788999999998 5789999999999999986 444443333 334445 59999999999999999998 76
Q ss_pred HH--HHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC-------CCChH
Q 005106 252 PN--LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDE 322 (714)
Q Consensus 252 ~~--~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~~~ 322 (714)
.+ -+.+++..|++|+++-|+..|++-+.+.++ ++||+.++++|++.++.+|...|-++|..+.++ +++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHH
Confidence 54 468999999999999999999999999995 999999999999999999999999999888776 56666
Q ss_pred HHHHHhccccccchh--hhccchhhhHHHHHH
Q 005106 323 RVVEIFSHANRQHRS--IMVGLASFSLYCLLS 352 (714)
Q Consensus 323 ~v~~ll~~~~~~~r~--~~v~~~~~~~~~~l~ 352 (714)
-+.+++.+....-.. ..++.+..++-||+.
T Consensus 213 LLYklId~kTe~~LHk~iki~REDVl~LYfie 244 (280)
T KOG4591|consen 213 LLYKLIDGKTENPLHKAIKIEREDVLFLYFIE 244 (280)
T ss_pred HHHHHHcCCCcchhHHhhhccccceeeehhhh
Confidence 677777555443222 236666666666654
No 46
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=2.1e-17 Score=149.68 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=91.6
Q ss_pred CCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCC-CCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC-HH
Q 005106 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (714)
Q Consensus 177 ~~~~~~DV~l~v~-~~~f~aHr~VLAa~S~yF~amF~~~-~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~-~~ 253 (714)
+++.+||++|.++ +++|+|||.||+++|+||+.||.++ +.+....+|.++ ++++++|..+++|+|+|++. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc-CCHHH
Confidence 4567999999999 8999999999999999999999998 677777788888 49999999999999999998 87 99
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHhh
Q 005106 254 LLLEILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 254 ~v~~lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
++.+++.+|++|+++.|++.|..+|.+.
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999764
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.6e-16 Score=162.00 Aligned_cols=239 Identities=17% Similarity=0.041 Sum_probs=211.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHhcC
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------MYQERSLYC 459 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------ay~~rg~~~ 459 (714)
++|.+++..|.+.+|.+.++.+|+. .+.+.+..++++|....++..|+..|...+...|.+-. +|...+++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~- 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ- 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH-
Confidence 7899999999999999999999998 78999999999999999999999999999999986444 44444444
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++|++.|..++.++|.+.++....|.-|.--++.+-|+..|+|+|++-. +++.+.|.|.++..-++++-++..|++|
T Consensus 307 --~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 --EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred --HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977 4898899999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+...-+. -+.||.|-+++......+|+- |-.+|+-||..||+++++++|+|.+-.+-
T Consensus 385 lstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 385 LSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 9986543 134888888888888888877 55689999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 651 (714)
|+.++|...++.|-.+.|+..|..+|+|.+-...
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~~ 476 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQFMSVHY 476 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeEEeeec
Confidence 9999999999999999999999888888664433
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.7e-16 Score=167.76 Aligned_cols=244 Identities=18% Similarity=0.105 Sum_probs=112.4
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l 492 (714)
..+|.++++.|++++|++.+.+.+... |++...|..+|.+ ++.++|+..|++.+..+|..+..+.+++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 356899999999999999997766554 6666666666643 456999999999999999999999999888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 493 QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 493 ~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
+++++|+..+.++.+..+++..+.....++...|+++++...++++.... |++ .......+.+....+++++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887777777666778999999999999999988755 333 2234445555555666666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
| +.++++||+++|+++.++...+.++...|+.++|.+.++...+..|+++..+..+|+++..
T Consensus 165 A------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 165 A------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp H------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred H------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 6 8899999999999999999999999999999999999999999989999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
+|++++|+..|+++++.+|+.. ....-|.+|.-++--
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999666 777778887766543
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=4.1e-16 Score=149.28 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
+.|++|++++|++ +.++|.++..+|++++|+..|++++.++|. +..+.++|.++..+|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4577888888875 556788888888888888888888888885 777777888888888888877777666666665
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+ +.+++++|.++.++|++++|+
T Consensus 91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 4 456777888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhc
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~~ 651 (714)
..|++|++++|++++.+.++|+++..+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888888888877654
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=168.46 Aligned_cols=252 Identities=14% Similarity=0.027 Sum_probs=172.9
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.-|..+.+.|+.-+|.-.|+.||..+|..+.+|+.+|.. ..-..||..+.++++|||++..+.+.+|+.|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 356667777777777777777777777777777777653 2335677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 496 EAALAEINRILGFKLALECLELRFC----------FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~~~~~~~R~~----------~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
.+|+..+.+=|..+|.... .+.. -....-.+..-.+.|-.|...+|.-.. ..+...+|-|....
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~D----pdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKID----PDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC----hhHHhhhHHHHhcc
Confidence 7777777777766664321 1110 000111122223333334444442100 01222222223333
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.+++ |+.||+.||...|++..+|+++|-.|..-++.+||+..|++|++|.|.+..+.||+|
T Consensus 444 ~efdr------------------aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 444 GEFDR------------------AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred hHHHH------------------HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 33333 488999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCC
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP 705 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (714)
.....+|.|+||+..|=.||.|++..- .-.|. |..|.++++-|.-||.|-
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~~~~---~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSR-------NHNKA---PMASENIWQTLRLALSAM 555 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhccc-------ccccC---CcchHHHHHHHHHHHHHc
Confidence 999999999999999999999998621 11121 233778888888777763
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.1e-14 Score=164.94 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc---
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--- 458 (714)
.+....++..+.+|++++|+..+..+|+++| ..+|+.+|.+|.++|+.++++...-.|.-++|++...|...+.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3445566777888999999999999999954 55788999999999999999999999999999988888776543
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HHH--H--HHHHHhcCCHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LEL--R--FCFFLALEDYQAA 531 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~--~~~--R--~~~~~~lgd~e~A 531 (714)
+..+.|.-+|++||.++|.+...+.+|+.+|.++|++..|+..|.+++++.|..+. ... + +-.+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34489999999999999999999999999999999999999999999999993221 111 1 2346666666777
Q ss_pred HHHHHHHHhhC------CC--------------------------------chhh----------------------hhh
Q 005106 532 LCDVQAILTLS------PD--------------------------------YRMF----------------------EGR 551 (714)
Q Consensus 532 l~d~~~al~L~------P~--------------------------------~~~~----------------------~~~ 551 (714)
++.+..++... |+ ...+ ..+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 77666666511 11 0000 000
Q ss_pred H----------HHHHHHHHHHHhhhhhh-----HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 005106 552 V----------AASQLHMLVREHIDNWT-----IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-GVLYFRQSLLL 614 (714)
Q Consensus 552 ~----------~a~~~~~~l~~~~~~~~-----~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~-~~~~~~~g~~L 614 (714)
+ ....+.+.+.+.+...+ ..+.++++.+.+...+.+. |+..+.+.+...++. +..|.++|.++
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 0 01222233333332222 3344455555556666666 778888888887654 56899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
..+|.+++|+..|.+++.++|++-++...++.+++.+|+.|+|+...++-+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998866
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=1.1e-15 Score=146.33 Aligned_cols=124 Identities=14% Similarity=-0.034 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 005106 500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (714)
Q Consensus 500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (714)
+.|+++|+++|+. ++.+|.++..+|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------------------------------- 56 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------------------------------- 56 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------
Confidence 4577888777764 456777777788777777766666666555
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005106 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (714)
Q Consensus 580 ~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~ 659 (714)
++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+.
T Consensus 57 -----------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 57 -----------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred -----------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 660 KAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 660 ~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.|++|++++|++. +|.+||.++..
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999988 99999988753
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=9.5e-14 Score=165.78 Aligned_cols=80 Identities=10% Similarity=-0.108 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
++...++.++...|+..+|++.++..+...|.|++....+|.++-..|+..+|...++++..+.|+.. +.+.+|++..|
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 34556788888899999999999999999999999999999999999999999999999999988887 88888887665
Q ss_pred c
Q 005106 684 S 684 (714)
Q Consensus 684 ~ 684 (714)
-
T Consensus 497 l 497 (822)
T PRK14574 497 L 497 (822)
T ss_pred h
Confidence 4
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.8e-13 Score=152.30 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH-H--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER-S-- 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~-~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r-g-- 456 (714)
++...+..|.....-|+|++|++...++-+.. ++..++ ..+.+..++|+++.|...+.++.+..|+...+..-+ +
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44556788999999999999998888876652 222333 346677999999999999999999988864332111 1
Q ss_pred --hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-HHHHHH---HhcCCHH
Q 005106 457 --LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE-LRFCFF---LALEDYQ 529 (714)
Q Consensus 457 --~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~-~R~~~~---~~lgd~e 529 (714)
.-+++++|++.++++++.+|+++.++.-++.+|+..|++++|+..+.+..+..+. ++... .++.++ ......+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1245599999999999999999999999999999999999999888888877663 32221 222211 1111111
Q ss_pred HHHHHHHHHHhhC----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 530 AALCDVQAILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 530 ~Al~d~~~al~L~----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+....+.++++-- |+++. +...........++.++ |...+++++. .|+++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~------~~~~~A~~l~~~g~~~~------------------A~~~L~~~l~-~~~~~~ 297 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVA------LQVAMAEHLIECDDHDT------------------AQQIILDGLK-RQYDER 297 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHH------HHHHHHHHHHHCCCHHH------------------HHHHHHHHHh-cCCCHH
Confidence 1222233332222 32311 11111111122222222 2445555555 344444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
+....+.+ ..+++++|+..+++.++..|+|++.+..+|.+++..|++++|...++++++++|+.+.|..-|-++.
T Consensus 298 l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD 372 (398)
T ss_pred HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33333322 2255555555555555556665555555566666666666666666666665555555554444443
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=4.6e-15 Score=148.33 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=132.2
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
+|..|.+.|.+ ..|..-+++|++.||++..+|.-||.+|+.+|..+.|-..|++|+.++|+ .+.++|-|+++..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 44555555444 66677789999999999999999999999999999999999999999996 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|...|++|+. +|.| |.-++.
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t 141 (250)
T COG3063 118 RPEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDT 141 (250)
T ss_pred ChHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchh
Confidence 99999999999986 6887 223455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|-|.|.|-.++|.++.|...+++|++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 677777777777777777777777777777777777777777777777777777776554433
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.9e-14 Score=151.40 Aligned_cols=258 Identities=15% Similarity=0.150 Sum_probs=205.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCC-HHHHH-HHHHHHHhc-CCC----cHHHHHHHHh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGH-KLWAY-EKLNSVISS-VTP----LGWMYQERSL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~-~~~A~-~~~~~aI~~-~p~----~~~ay~~rg~ 457 (714)
.+.|.+...+.++++|+..|+...+.+|-.. +-...++++-+.+ -.-++ +....-|.. .|. -|+-|.-|+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 4577888889999999999999887754321 1223444444443 22221 111112222 232 5677777765
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
- ++|+..|.+|+.|||....+|.-.|-=|+++++-..|+..|++||.++| +..+|+.+|.+|.-++-..=|+-.|+
T Consensus 346 H---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 346 H---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred H---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLL 615 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (714)
+|.++.|++. ..|..+++.....++.. |..+|-+|+...-.+..++.++|.++.
T Consensus 423 kA~~~kPnDs-------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 423 KALELKPNDS-------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhcCCCch-------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 9999999982 23334444444444444 588999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 616 RLNCPEAAMRSLQLARQ-------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~-------l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++.++|...|.+-++ ..|.--.|...++....+.+++++|-....++..-.+--|
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 99999999999999999 6677788888899999999999999988888877654443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.9e-13 Score=152.66 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=211.4
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~---a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
.+.....+....+..+. ..+.+...|.+..++|++++|..+|.+|.+..+.. .....++++...|+++.|.+.+
T Consensus 100 ~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred HHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555554443332 23455567889999999999999999998874433 2233588999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 439 NSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYM----YRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~----~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
++.++.+|+++.++.-.+.. ++.++|+..+.+..+..+.....+. ..+.-+...+..++++..+.++.+-.|
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 99999999988887766542 4559999999999987555444332 222233455666677788999998888
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 511 -----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 511 -----~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
++..+...+..+...|++++|+..++++++..|++.... ...+ ..+..... +
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~----~~~l------------------~~~~~l~~-~ 313 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS----LPLC------------------LPIPRLKP-E 313 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch----hHHH------------------HHhhhcCC-C
Confidence 567777788899999999999999999999999984210 0011 11111111 1
Q ss_pred ccc-hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQ--LARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+.. ++..++++++.+|+++ .+...+|.++.++|++++|.+.++ ++++.+|++.. +..+|.++..+|+.++|...
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 212 4778999999999999 899999999999999999999999 68889998766 55999999999999999999
Q ss_pred HHHHHhc
Q 005106 661 AEESIQM 667 (714)
Q Consensus 661 ye~Ai~i 667 (714)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998764
No 58
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=1.4e-15 Score=130.60 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=85.9
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~aA 262 (714)
||++.+||+.|++||.+|+++|+||++||.+++.++....|.+++ +++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 799999999999999999999999999999999888888999984 9999999999999999999 9899999999999
Q ss_pred hhhChhhHHHHHH
Q 005106 263 NKFCCERLKDACD 275 (714)
Q Consensus 263 d~~~v~~L~~~C~ 275 (714)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999994
No 59
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=2.5e-14 Score=158.18 Aligned_cols=225 Identities=13% Similarity=0.050 Sum_probs=181.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CC
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE 460 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~ 460 (714)
+-.|+.+++.|.+-+|.-.|+.|++.+ |..||..||+++...++-..|+..+.++++++|++-.++..++-. +.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 578999999999999999999999984 677899999999999999999999999999999988888777532 23
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHH----HHH---HHHhcCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMY----RAS---SLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQA 530 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~----rg~---~l~~l~r~~eAl~~~~kAL~l~P---~~~~~~~R~~~~~~lgd~e~ 530 (714)
..+|+..+++=|+-.|....--.. ++. -+..-..+..=...|..|...+| +++....+|.+|.-.|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 389999999999988754322111 000 00111112233445555555555 58888889999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 005106 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 531 Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~ 609 (714)
|+.+|+.||..+|++ +..|..|+-.+..-++.. |++.|+|||++.|+.+++++|
T Consensus 449 aiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 999999999999998 445666666666656555 699999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
+|.....+|.++||...|=.||.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999987
No 60
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.1e-14 Score=153.55 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------------
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------------- 446 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-------------- 446 (714)
.+...-.+|......+++..|++.|.++|+++ ....+.+.+.+|+.+|++...+..-.++++..-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999996 222355678899999999998888887776421
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
..|.+|..++.+ +.|+..|.+++.---+ +.++-.++..++++.+..+.--++|. ..-....|..+...
T Consensus 303 r~g~a~~k~~~~---~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDY---EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhH---HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 255677777555 8889999887754333 77888888999999999998888887 45456678899999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|||..|+..|.+||..+|++.-.|++. |.||..|... ..+|.+.+.+|+++|+...
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNR------------------Aac~~kL~~~------~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNR------------------AACYLKLGEY------PEALKDAKKCIELDPNFIK 427 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHH------------------HHHHHHHhhH------HHHHHHHHHHHhcCchHHH
Confidence 999999999999999999985544433 3333333332 1237788999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEE 663 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~ye~ 663 (714)
+|+++|.+|..+.++..|++.|+.|++++|++.++....+-|.-.+ |+..+- ..+++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~e-e~~~r 485 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPE-ETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHH-HHHHh
Confidence 9999999999999999999999999999999999999988888764 333333 35555
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.8e-13 Score=141.44 Aligned_cols=277 Identities=12% Similarity=0.036 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------~~~ay~~ 454 (714)
.-.-.+|.+++-.|++++|+.-|+++.-++|.. ++-..|-.+...|+++.--+........... .+...+.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 334568999999999999999999998886533 3334566778889888776666666665432 2333344
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 455 rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
+..+ ..|+..-+|+|+++|++.++|.-.|.++..+||+++|+-.|+.|+.+.|. .++|..+.-+|+..|++.||..
T Consensus 313 ~K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 313 EKKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 4444 88999999999999999999999999999999999999999999999995 8988888889999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
--+-++.+=|+++. +..+.|.. .....--++| =..++.+|.+.|+...+-.-++
T Consensus 390 ~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKA------------------Kkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 390 LANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKA------------------KKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHhhcchh------hhhhhcceeeccCchhHHHH------------------HHHHHhhhccCCccHHHHHHHH
Confidence 99999999998832 33333211 1111112223 3478999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~ 689 (714)
.++.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|..++ -+||+-+...+.||.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~-sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR-TLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH-HHHHHHHHHhccCCC
Confidence 999999999999999999999999855 8999999999999999999999999999999995 378888777766654
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=1e-12 Score=142.82 Aligned_cols=271 Identities=14% Similarity=0.026 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH-HHHHHHhCCHHHHHHHHHHHH----hcCCCcHHHHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL-ARLGYIKGHKLWAYEKLNSVI----SSVTPLGWMYQERS 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~l-g~~~~~~G~~~~A~~~~~~aI----~~~p~~~~ay~~rg 456 (714)
.....+..|......|++++|+..++++++..|.+..... +..+...|++..+.....+++ ..+|....++...|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 3455677899999999999999999999998765542211 445555565555555555554 45666555555443
Q ss_pred h----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcCC
Q 005106 457 L----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALED 527 (714)
Q Consensus 457 ~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lgd 527 (714)
. .+++++|+..++++++++|+++.++..+|.++.+.|++++|+..+++++...|. + ..+..++.++..+|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 2 255699999999999999999999999999999999999999999999998763 2 234568889999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC--CCChh
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGV 605 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~--P~~~~ 605 (714)
+++|+..|++++...|..................... .....++-|-.+.+ .. .... +....
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~w~~~~~-------------~~--~~~~~~~~~~~ 265 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GHVDVGDRWEDLAD-------------YA--AWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CCCChHHHHHHHHH-------------HH--HhhcCcccchH
Confidence 9999999999988877321111110000100000000 00111211111111 10 1111 22223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
....++.++...|+.++|.+.++......-. ...+...++++++.+|++++|+....+|+.+-
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3346888899999999999999887664433 46778899999999999999999999998753
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=2.2e-13 Score=139.82 Aligned_cols=165 Identities=10% Similarity=-0.020 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhc--------C
Q 005106 462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLAL--------E 526 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~---~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~l--------g 526 (714)
++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++..|+ +. +++.+|.++..+ |
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 555556666777777665 57899999999999999999999999999995 43 577889888876 8
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++.+|++..+. .....+.. +... ....
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~------~a~~~~~~-----------------------------~~~~------~~~~ 168 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAP------DAKKRMDY-----------------------------LRNR------LAGK 168 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHH------HHHHHHHH-----------------------------HHHH------HHHH
Confidence 99999999999999999984211 10000000 0000 1123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
....|.++.+.|++++|+..++++++..|++ +++++++|+++..+|++++|.+.+++...-
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578889999999999999999999997764 589999999999999999999877665543
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=2.7e-12 Score=153.45 Aligned_cols=322 Identities=9% Similarity=-0.015 Sum_probs=226.1
Q ss_pred hhhHHHHHHH--hhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH
Q 005106 344 SFSLYCLLSE--VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL 421 (714)
Q Consensus 344 ~~~~~~~l~~--V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~l 421 (714)
......++.. +..+.. +.+.++++++++.+..++. ..++..++..+.+.++.++|++.+++++..++...++ +
T Consensus 99 n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l 173 (822)
T PRK14574 99 NISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-M 173 (822)
T ss_pred CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-H
Confidence 3445555533 444433 5678888998887766655 3344566888899999999999999999987664443 5
Q ss_pred HHHH--HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cC------------------------------------
Q 005106 422 ARLG--YIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC------------------------------------ 459 (714)
Q Consensus 422 g~~~--~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~------------------------------------ 459 (714)
+.++ ...++..+|++.++++++.+|++..++.++-. ++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 5544 44677777999999999999988877766411 00
Q ss_pred ------------ChhHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHH
Q 005106 460 ------------EGDKRWEDLDKATALDPTLS-------YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELR 518 (714)
Q Consensus 460 ------------~~~eAl~d~~kAi~LdP~~~-------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~-~~~~R 518 (714)
..+.|++.+++.+...|..+ .+.+-|=.++...|++.+++.+|+..-.-... |. +....
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 11457888888888554433 34456778888889999999999887754322 22 23445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC------ch-----hhhhhH------HHHHHHHHHHHhhh---------------
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPD------YR-----MFEGRV------AASQLHMLVREHID--------------- 566 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~------~~-----~~~~~~------~a~~~~~~l~~~~~--------------- 566 (714)
|-.|+.++..++|+..|++++.-+|. .. .|+-.. .|..+...+....-
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 66888889999999999988875531 11 122111 12222222222110
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+|.++... +.....-.++.+ |...++..+...|+|+.++..+|.++...|.+.+|+..++.+..++|++..+.+.+|
T Consensus 414 d~~~~~~l--~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTL--LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 11111110 011111124444 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+..++|++++|-...+..++..|...
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999999999999999888766
No 65
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.54 E-value=4.9e-14 Score=149.21 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=153.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceE--EeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDI--DLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I--~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.-+||++..-|++.+.||..| ..|+||++||.|.++|+++..| +|+|++|+..+|..++.=+|.+++. |..
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l 140 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKL 140 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccH
Confidence 34578889999999999999999999 6789999999999999999765 5677789999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+.|..++.+|..++++++.+.|.+.+...++ +.+++.+++.+..|+...+.+.|+++++.|+.. .++-+-+
T Consensus 141 ~dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm 219 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLM 219 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHH
Confidence 9999999999999999999999999999995 899999999999999999999999999998876 3344555
Q ss_pred HHHhccccccchhhhccchhhh-HHHHHHHhhhcCC
Q 005106 325 VEIFSHANRQHRSIMVGLASFS-LYCLLSEVAMNLD 359 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~-~~~~l~~V~~d~~ 359 (714)
..++.|+++- +-..+|. +..+.+|+=+...
T Consensus 220 ~~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~ 250 (488)
T KOG4682|consen 220 KQLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLV 250 (488)
T ss_pred HHHhCCCCeE-----EEEeeehHHHHHHHHHHhhhc
Confidence 6677777763 4455666 4456678766554
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=1.2e-11 Score=134.45 Aligned_cols=296 Identities=14% Similarity=-0.018 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH----
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ---- 453 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~---- 453 (714)
.+++..+|..+...|+.++|...|.++.+..+ ....+..|.++...|++++|.+.+.++++.+|++..++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 67888999999999999999999999887733 223455688899999999999999999999999886655
Q ss_pred --HHHhc-CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH
Q 005106 454 --ERSLY-CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ 529 (714)
Q Consensus 454 --~rg~~-~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e 529 (714)
..|.+ +..+.+...+......+|+...++..+|.++...|++++|+..++++++++|+ +..+..++.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 22322 22244444444555788888899999999999999999999999999999996 677788999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~-~~~~ 608 (714)
+|+..+++++.+.|..... ........+.+....+++++| +..+++++...|... ....
T Consensus 166 eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A------------------~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 166 EGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAA------------------LAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred HHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHhccccCCChHHHH
Confidence 9999999999999864221 122333444455555666666 778888887776322 2222
Q ss_pred -HHHHHH---HHcCChHHHHHH--H-HHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 005106 609 -RQSLLL---LRLNCPEAAMRS--L-QLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--------- 670 (714)
Q Consensus 609 -~~g~~L---~~lg~~eeAl~~--~-~~Al~l~P~--~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~--------- 670 (714)
+.+..+ ...|....+.++ . .......|. ....-..+++++...|+.++|....++.....-.
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 222222 224434333333 1 111111122 2233347899999999999999999887764322
Q ss_pred -HHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 671 -FEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 671 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
...-.++|++..-..= -...+.+|.+|+
T Consensus 306 ~~~~~~l~A~~~~~~g~----~~~A~~~L~~al 334 (355)
T cd05804 306 DVGLPLAEALYAFAEGN----YATALELLGPVR 334 (355)
T ss_pred hhhHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 3366778877766652 234455555554
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=147.63 Aligned_cols=239 Identities=14% Similarity=0.088 Sum_probs=181.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
.|..++.+.+|..|+..|+.||...|+++..|.+|. .++++++|+-|..+.++++|.+...+...+.++..++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 455577778888888888888888888888887774 3466688888888888888888888888777777777766
Q ss_pred HHHHHHH---------------HHHhcCCC-HHH--HHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 497 AALAEIN---------------RILGFKLA-LEC--LEL-RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 497 eAl~~~~---------------kAL~l~P~-~~~--~~~-R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+|-..++ +.+.-.-. |.+ +.. -+.++.-+|++++|+..--.++++||.+. .+..+
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~------~al~v 208 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA------EALYV 208 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh------HHHHh
Confidence 6664333 11111100 222 222 34578888888888888888888888883 34444
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH------------HHHHHHHHHHcCChHHHHH
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL------------YFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~------------~~~~g~~L~~lg~~eeAl~ 625 (714)
++.+.--....+.| ...++|+|.++|.+..+ |-.+|+=+.+.|++..|-+
T Consensus 209 rg~~~yy~~~~~ka------------------~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 209 RGLCLYYNDNADKA------------------INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred cccccccccchHHH------------------HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 44443333344444 66899999999988765 6688999999999999999
Q ss_pred HHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 626 SLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 626 ~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.|..||.++|++. --|+|++.+...+||.+||+..-++|++|+|++. |+..+|-+..|
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999999999864 4589999999999999999999999999999999 99999876543
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.1e-11 Score=137.99 Aligned_cols=254 Identities=11% Similarity=-0.014 Sum_probs=187.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhh--H-hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--I-AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~-~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
+...+....++|++++|..+|.+|.+.++... . ...+.++...|+++.|.+.++++++..|++.+++...+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33346666899999999999999999865542 2 1347899999999999999999999999988877666432
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHH--------HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYM--------YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~--------~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e 529 (714)
++.++|++.+.+..+..+..+.... .+.........-+.....+++.-.-.| ++......+..+...|+.+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 4558899888887777766544332 211111222222222333333222234 3677777888999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
+|....+++++..|+... .. +|-....-+...++..+++.++.+|+++++++.
T Consensus 281 ~A~~~L~~~l~~~~~~~l-------~~--------------------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 281 TAQQIILDGLKRQYDERL-------VL--------------------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHHHHHHHHhcCCCHHH-------HH--------------------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999996665421 11 111111112122588999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
.|.++.+.+++++|.+.++++++.+|++. .+..++.++-.+|+.++|...|++++.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999976 4668999999999999999999998875
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.5e-12 Score=141.91 Aligned_cols=218 Identities=13% Similarity=-0.003 Sum_probs=181.0
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~ 490 (714)
+-+|+.+|.-|+..|++.+|.+.|.|+..++|..|.+|..-|.. +..+.|++.|.+|-++-|....|..++|.=|+
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 33577778888888888888888888888888888888877754 34489999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hhhhhHHHHHHHHHHHHhhhhh
Q 005106 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~-~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
.++.+.-|-..|..|+.+.|+ |-..+-.|.+....+.|.+|+..|+++++.-+..- .-.--.....++|.+...+..+
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999999999996 77778899999999999999999999994333220 0001122455566666666666
Q ss_pred hHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 648 (714)
++| +..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|+|.-+---+|.++
T Consensus 472 ~eA------------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEA------------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHH------------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 666 88999999999999999999999999999999999999999999999977766677655
Q ss_pred Hh
Q 005106 649 YD 650 (714)
Q Consensus 649 y~ 650 (714)
-+
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 44
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=8.8e-12 Score=143.70 Aligned_cols=257 Identities=16% Similarity=0.021 Sum_probs=195.1
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
..+.+.|+..+.+|++++|.+.+..+|..+|....+|+.+|.+ |+-++++...-.|--|+|.+..-|..+|....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3456677788889999999999999999999888888777654 444899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc----hhhhhhH-------------H
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY----RMFEGRV-------------A 553 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~----~~~~~~~-------------~ 553 (714)
+|.+++|+-.|+|||+.+|. ....+.|..+|.++|++..|..-|.+++.++|.- .+...+. +
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999995 7877889999999999999999999999999921 0000000 0
Q ss_pred H------------------HHHHHHHHHhhhhhhHHHHHHhhhhc----------------------cccc---------
Q 005106 554 A------------------SQLHMLVREHIDNWTIADCWLQLYDR----------------------WSSV--------- 584 (714)
Q Consensus 554 a------------------~~~~~~l~~~~~~~~~A~~~~~l~~~----------------------~~~~--------- 584 (714)
+ ......+.-...+|+.|...+.-.-. .-.+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 1 11222223333445555432222111 0000
Q ss_pred -----------cccchHHHHHHHHHhC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 005106 585 -----------DDIGSLSVIYQMLESD----APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWIL 648 (714)
Q Consensus 585 -----------~d~~al~~~~qaL~l~----P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~l 648 (714)
+.-..+.++..-+..+ -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-|+
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1111112222222222 2457889999999999999999999999999998864 56788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 649 YDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 649 y~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..+|++++|+..|++++.++|+.-
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCch
Confidence 999999999999999999999876
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=6e-13 Score=138.29 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=193.7
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
-+|++|+.+|-+.+|.+.+.++++..|- +..+|+.. .+.+.|+..|...++--|.+.-.....|-++..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri---dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI---DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh---ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 4899999999999999999999998763 34444444 34489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
++++|+..|++++.++|. .++.--.+.-|..-++.|-|++.|++++++.-.+.. .....++.=...+|++.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~- 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLV- 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhh-
Confidence 999999999999999995 565444555678889999999999999999888754 334444444444555555
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 573 ~~~~l~~~~~~~~d~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
|.+|.||+...- ..++.|+|+|.+..-.|++--|.++++.|+-.+|+++++++|+|.+--
T Consensus 378 -----------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 378 -----------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred -----------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 889999998865 457889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH
Q 005106 650 DTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..|+.++|-+.+.-|-+..|.-.
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hcCchHHHHHHHHHhhhhCcccc
Confidence 99999999999999999999743
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.48 E-value=1.8e-12 Score=152.40 Aligned_cols=159 Identities=9% Similarity=-0.055 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+++.-...-.+-.|+++.++.++|.+..++|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444334445567888999999999999999999999999999999997 67778888888888888888876666666
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
.+|++ +.+++.+|.+|.++|++
T Consensus 149 ~~p~~----------------------------------------------------------~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 149 GGSSS----------------------------------------------------------AREILLEAKSWDEIGQS 170 (694)
T ss_pred cCCCC----------------------------------------------------------HHHHHHHHHHHHHhcch
Confidence 66665 56678899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKA 678 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~a~~~~~ 678 (714)
++|.+.|+++++-+|++++++.++|.+|..+|+.++|...|++|++. .|..-+|.++.
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 44444665544
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=6.8e-12 Score=125.85 Aligned_cols=203 Identities=18% Similarity=0.071 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+..+||.-|++.|++..|..-+++||+.+|.+. |..++.+|..+|+.+.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A-------------------------- 88 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLA-------------------------- 88 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhH--------------------------
Confidence 45567788888888888888888888888876554 45555566666665555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
-+.|++|+.++|++....+|-|.-+..+|++++|..-|++|++ +|. ++.+.|.|+|-.++|+.+.|..+|+
T Consensus 89 ----~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 89 ----DESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ----HHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 4456778888888888888888888889999999999999987 353 5678888888888999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++.... .......-..+++..| -..+++-...-+-.++..--.-.+-.+
T Consensus 164 raL~~dp~~~~~~------l~~a~~~~~~~~y~~A------------------r~~~~~~~~~~~~~A~sL~L~iriak~ 219 (250)
T COG3063 164 RALELDPQFPPAL------LELARLHYKAGDYAPA------------------RLYLERYQQRGGAQAESLLLGIRIAKR 219 (250)
T ss_pred HHHHhCcCCChHH------HHHHHHHHhcccchHH------------------HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 9999999884311 1111111112222223 333333333333333333333333445
Q ss_pred cCChHHHHHHHHHHHHhCCCChhH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+|+...|-+.-.+.-++.|...+-
T Consensus 220 ~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 220 LGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hccHHHHHHHHHHHHHhCCCcHHH
Confidence 788887777777777777876653
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=4.2e-12 Score=128.11 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCC--HHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALED--YQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd--~e~Al~d~~~ 537 (714)
++++..|.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.+ +...|+ +++|++.+
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l-- 133 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI-- 133 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH--
Confidence 77888888888888888888888888888888888888888888888885 7777777764 355564 24444444
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++++.+|+++.+++++|..+.++
T Consensus 134 --------------------------------------------------------~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 134 --------------------------------------------------------DKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred --------------------------------------------------------HHHHHhCCCChhHHHHHHHHHHHc
Confidence 444444444456777788888888
Q ss_pred CChHHHHHHHHHHHHhCCCChhH
Q 005106 618 NCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea 640 (714)
|++++|+..++++++++|.+.+.
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccH
Confidence 88888888888888888876655
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=7.7e-12 Score=141.25 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-------cchh--hHh-hHHHHHHHhCCHHHHHHHHHHHHhc--------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIY--SIA-GLARLGYIKGHKLWAYEKLNSVISS-------- 444 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~~~--a~~-~lg~~~~~~G~~~~A~~~~~~aI~~-------- 444 (714)
..+.++++..+..+|+|+.|+..|+.|+++ +|.. .+. .+|.+|..+|++.+|+..|++|+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455667999999999999999999999988 3432 233 4899999999999999999999986
Q ss_pred CC-------CcHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 445 VT-------PLGWMYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (714)
Q Consensus 445 ~p-------~~~~ay~~rg~~~~~~eAl~d~~kAi~L--------dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~ 509 (714)
+| |++.+|.++|++ ++|...+++|+++ .|..+..+.+.|.++...+++++|+..+++++++-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34 345555555444 8888888888765 45567788889999999999999999999998862
Q ss_pred ---C-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 510 ---L-----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 510 ---P-----~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
| . +....+.|.+|..+|+|++|...|.+|++..-..-.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--------------------------------- 402 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--------------------------------- 402 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---------------------------------
Confidence 2 2 233456788999999999999999999987533200
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCC
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~ 653 (714)
..++......+++|....+++++++|-..|.+++.+. |+-...+-|+|-+|-.+|+
T Consensus 403 -----------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 403 -----------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred -----------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 0112233445567777777788887777777777663 4455677788888888888
Q ss_pred HHHHHHHHHHHHh
Q 005106 654 CEEGLRKAEESIQ 666 (714)
Q Consensus 654 ~eeAl~~ye~Ai~ 666 (714)
+|+|+...++++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887774
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.44 E-value=4.7e-12 Score=129.96 Aligned_cols=163 Identities=18% Similarity=0.082 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MY 452 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~---ay 452 (714)
+...+++.+|..+...|++++|+..|+++++..|. .++..+|.++...|++++|+..|+++++.+|+.+. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567889999999999999999999999998553 46788999999999999999999999999997654 56
Q ss_pred HHHHhc------------CChhHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 005106 453 QERSLY------------CEGDKRWEDLDKATALDPTLSYPY-----------------MYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 453 ~~rg~~------------~~~~eAl~d~~kAi~LdP~~~~ay-----------------~~rg~~l~~l~r~~eAl~~~~ 503 (714)
+.+|.. +..++|+..|+++++.+|++..++ .++|.++...|++++|+..|+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666542 234889999999999999997653 467899999999999999999
Q ss_pred HHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 504 RILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 504 kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
+++...|+ ++++..+|.++..+|++++|+..++....--|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999774 46788899999999999999998777665544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=1.3e-10 Score=132.48 Aligned_cols=312 Identities=16% Similarity=0.142 Sum_probs=212.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcc--chh--hHhhHH-HHHHHhCCHHHHHHHHHHHHhcCC------------Cc
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIY--SIAGLA-RLGYIKGHKLWAYEKLNSVISSVT------------PL 448 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~--a~~~lg-~~~~~~G~~~~A~~~~~~aI~~~p------------~~ 448 (714)
++.++..+...|.-..|+...++.+.+. |.+ .+.-.+ .+.-..|...+++.+..++|...- -.
T Consensus 360 w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~l 439 (799)
T KOG4162|consen 360 WYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFL 439 (799)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 3555556666666666666665555543 322 122122 355668888899999999998421 14
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHH
Q 005106 449 GWMYQERSLY--------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELR 518 (714)
Q Consensus 449 ~~ay~~rg~~--------~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R 518 (714)
|-+|..+..- -...+++..+++|++.+|+|+.+.++++.=|..+++.+.|+...+++|++++. +.+|+.+
T Consensus 440 Gi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 440 GIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4444444321 01278889999999999999999999999999999999999999999999883 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHH-------HHHHHHHHHHhhhhhh---------------------
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVA-------ASQLHMLVREHIDNWT--------------------- 569 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~-------a~~~~~~l~~~~~~~~--------------------- 569 (714)
+.++...+++.+|+.-.+.+++--|+|.. -.|+.. ....++.+.+.+.-|+
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 99999999999999999999998888421 111111 1111122222222222
Q ss_pred --------------------------H-----------------------HHHHHhhhhccccccc-cchHHHHHHHHHh
Q 005106 570 --------------------------I-----------------------ADCWLQLYDRWSSVDD-IGSLSVIYQMLES 599 (714)
Q Consensus 570 --------------------------~-----------------------A~~~~~l~~~~~~~~d-~~al~~~~qaL~l 599 (714)
. -..|....+.|...+. .++..++..|=.+
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0 0122233333333322 2356677777777
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCHH-HHHH
Q 005106 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR--KAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~--~ye~Ai~i~~~~~-a~~~ 676 (714)
+|-.+..|+.+|.++...|..+||+..|..|+.++|++......+|.++...|+-.-|.. ....|++++|+.. |||.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888888887666666 7777888888777 8887
Q ss_pred HHHH---hhccCCCCCchhhHHHH
Q 005106 677 KAYA---LADSSQDSSCSSTVVSL 697 (714)
Q Consensus 677 ~~~~---~~~~~~~~~~~~~~~~~ 697 (714)
-|-+ ++|+.--.+|-.+-+||
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 7764 45666555666666554
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=2.5e-12 Score=129.71 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.++.++++..++++++.+|+ ++.|..+|.+|..+|++++|+..|+++++++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------------------------- 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------------------------- 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 77889999999999999995 8888899999999999999988887777777776
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L-~~lg~--~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
+.++++.|.++ ...|+ .++|...+++|++++|++.+++.++|.+
T Consensus 107 ---------------------------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 107 ---------------------------------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 45667788875 67777 5999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 648 LYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 648 ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.+|++++|++.|++++++.|...
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999988754
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.6e-12 Score=133.26 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
..+=|+=+++-++|++|+.-|++||+++|. +-.|.+|+.+|.++|.++.|+.|+..||.+||.|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--------------- 148 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--------------- 148 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---------------
Confidence 345555666666666666666666666663 4444556666666666666666666665555555
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
..+|-++|.++..+|++++|++.|++||+++|+|...
T Consensus 149 -------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 149 -------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred -------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 2344556666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhc-C-CCHH
Q 005106 641 LVYEGWILYDTSHCE---EGLRKAEESIQM-K-RSFE 672 (714)
Q Consensus 641 ~~~~G~~ly~~G~~e---eAl~~ye~Ai~i-~-~~~~ 672 (714)
--+++|+-..++.-. .+....+-+-.+ . |++-
T Consensus 186 K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 186 KSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 666666655555444 444444433333 2 5555
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=134.72 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
++|++|+..|++||+|+|+++-.|.|||.+|.+||.++.|+.+..+||.+||. ..+|-.+|.+|..+|++++|++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 34499999999999999999999999999999999999999999999999998 67777789999999999999999999
Q ss_pred HHhhCCCch
Q 005106 538 ILTLSPDYR 546 (714)
Q Consensus 538 al~L~P~~~ 546 (714)
||+|+|++.
T Consensus 175 aLeldP~Ne 183 (304)
T KOG0553|consen 175 ALELDPDNE 183 (304)
T ss_pred hhccCCCcH
Confidence 999999995
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=4.7e-11 Score=135.89 Aligned_cols=281 Identities=15% Similarity=0.057 Sum_probs=215.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
..++.+++++.+.+. +..+.|.++.-+..+++++.|.+...++++++ +.-+|+.++.+...++++.+|+...+.
T Consensus 462 kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444556665554443 35778999999999999999999999999993 566788999999999999999999999
Q ss_pred HHhcCCC-----cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH---------HHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 441 VISSVTP-----LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY---------MYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 441 aI~~~p~-----~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay---------~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
+++-.+. .+.++.+.- +++.++|+.-...-+.+--+-+.+- ..-+...+.+.+..+|+..++++.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~-~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELT-FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhh-cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 9987765 344444432 4455666665555544433222111 112223333344555555555554
Q ss_pred hc-------------------CCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 005106 507 GF-------------------KLAL--------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (714)
Q Consensus 507 ~l-------------------~P~~--------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~ 559 (714)
.+ .|.+ ..|...+.++...+.-++|..+...|-.++|-- ...+++.|
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~~~~~~~G 691 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------ASVYYLRG 691 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------HHHHHHhh
Confidence 33 1211 124456678999999999999999999999876 45778888
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCC
Q 005106 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR--SLQLARQHAASD 637 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~--~~~~Al~l~P~~ 637 (714)
.+-...+++.+| ...|.-|+.+||+++..-..+|.+|.+.|++.=|.. .++.|++++|.+
T Consensus 692 ~~~~~~~~~~EA------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 692 LLLEVKGQLEEA------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HHHHHHHhhHHH------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 888888889888 778999999999999999999999999999988888 999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++|++++|.++-.+|+.++|...|.-|+.+.+|..
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999998865
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=7e-12 Score=117.21 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
++.+|+++|.++.++|++++|...++++++++|++++.++++|++++..|++++|++.++++++++|+...+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 345667777788888888888888888888888888888888888888888888888888888888877653
No 83
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.37 E-value=4.3e-13 Score=151.57 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=119.8
Q ss_pred CCCCCccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCC----C
Q 005106 177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNG----V 250 (714)
Q Consensus 177 ~~~~~~DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~----i 250 (714)
+.+...|+.+.. +|+.++||+++|++++.||..||..-+.|+..-.+... .+..+.|+.+|+|+|+ ++..- -
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence 445555666655 88889999999999999999999999999988666655 4889999999999995 43320 1
Q ss_pred CHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCC
Q 005106 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (714)
Q Consensus 251 ~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (714)
..+-+.++|..||.|-+.+|+..|+.-|...++ ..+|-.+++||..|+|.+|...|++|+..|+...|.
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 345688999999999999999999999999994 899999999999999999999999999998866443
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=4.9e-11 Score=140.39 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=121.0
Q ss_pred HhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
...||.+..++.+++. .+++++|...++++++++|++..++.++|.++.++++++||+..+++++..+|+ +..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 3445655555555543 245588888899999999999999999999999999999999999999999996 78888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.+|.++.++|++++|+..|+++++.+|++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~--------------------------------------------------- 187 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEF--------------------------------------------------- 187 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCc---------------------------------------------------
Confidence 99999999999999999888888866664
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+.++.++|.+|..+|+.++|...|++|++...+-.-.+.++
T Consensus 188 -------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 188 -------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 45678889999999999999999999999998877664443
No 85
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.35 E-value=5.6e-09 Score=124.55 Aligned_cols=278 Identities=8% Similarity=-0.054 Sum_probs=176.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH----HhcC
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQER----SLYC 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~-p~~~~ay~~r----g~~~ 459 (714)
.+..+-..|...|++++|.+.|++..+ ....+|..+...|.+.|+.++|++.|++..+.. .++...|... +..+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 334556667777777777777776432 334456667777777777777777777765532 1122223222 2234
Q ss_pred ChhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
..++|...+..+++.. +.+...|+.+...|.+.|++++|...|++.. +|+...|+.....|...|+.++|+..|++.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4477777777777665 5566677777777777777777777777765 466566666666777777777777777776
Q ss_pred Hh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhhhccccccccc-hHHHHHHHHHhCCCChh
Q 005106 539 LT--LSPDYRMFEGRVAASQLHMLVREHIDNWTIAD----------CWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGV 605 (714)
Q Consensus 539 l~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~ 605 (714)
.+ +.|+...|..-..+....+.++...+.++... .|..+.+.+.+.++.+ |...++++ ...| ++.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~ 495 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVN 495 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHH
Confidence 65 45665544433333333333333333222221 1122222222233333 45555554 1223 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
.|..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|...+++.-+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 68788888888999999999999999999999999999999999999999999988876654
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=5.6e-11 Score=134.64 Aligned_cols=215 Identities=15% Similarity=0.041 Sum_probs=157.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~ 466 (714)
-.++..+...|-..+|+..|++ ...+.+...+|...|+..+|.....+-++ .|+.+..|.-+|.. -.--.
T Consensus 402 ~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChH
Confidence 3678888889999999999988 34556677789999999999888888888 89999999999876 33344
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 467 DLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 467 d~~kAi~Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.|+||+++- -.++.|.+..|......++|++|..++++.++++|- .+.|+.+|++..++++++.|..+|.+.++++|+
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 567777663 335567788888888899999999999999999994 899999999999999999999999999999998
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+..+.++.++.+.+ ..+-.+ |-..+..|+.-+-.+...|-|--.+..+.|.+++|+
T Consensus 552 ~~eaWnNls~ayi~------~~~k~r------------------a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIR------LKKKKR------------------AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred chhhhhhhhHHHHH------HhhhHH------------------HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 83322222222211 111111 233455555555555556666666666666666666
Q ss_pred HHHHHHHHhCC
Q 005106 625 RSLQLARQHAA 635 (714)
Q Consensus 625 ~~~~~Al~l~P 635 (714)
+.|.+-+.+.-
T Consensus 608 ~A~~rll~~~~ 618 (777)
T KOG1128|consen 608 KAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhh
Confidence 66666555443
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.34 E-value=3.8e-11 Score=138.99 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=189.7
Q ss_pred HhccchHHHHHHHHHHHhccc--h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh----h
Q 005106 394 LLRKEYDEAEHLFEAAVNAGH--I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG----D 462 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~--~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~----~ 462 (714)
+....+.++--+|-++++.+- + ..+...+..-+.+.+...|+..+-+++.++++.|.+|--+|.|++- .
T Consensus 430 ~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~ 509 (1238)
T KOG1127|consen 430 FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK 509 (1238)
T ss_pred cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 334556666666666655521 1 1111222223445668888888889999999999999888876432 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.|..+|++|.+|||+++.++...+..|.+....++|.+..-++=+..|. -..|..||..|.+-++.-+|+.+|+.|+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 6778899999999999999999999999999999999888777777774 2345568888999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
+.+|++ ..||..+++...+-+++. |+.+|++|..++|.+.-..|-.+.....+|
T Consensus 590 R~dPkD-------------------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 590 RTDPKD-------------------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cCCchh-------------------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 999987 567778888777778777 788999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWIL-------YDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-------y~~G~~eeAl~~ye~Ai~ 666 (714)
.+++|+..+...+.-..+..-++..+|.++ +-+|=.-+|...++++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999998888888777666666666554 445667777777777765
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=2.6e-11 Score=113.32 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|.++++++|++..+...+|..+...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 577888888888888888888888888888888888888888885 7777778888888888887777666666655554
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+..++++|.++..+|++++|+.
T Consensus 85 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 85 ----------------------------------------------------------PRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence 4567778888888888888888
Q ss_pred HHHHHHHhCCCChhH
Q 005106 626 SLQLARQHAASDHER 640 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea 640 (714)
.++++++++|++...
T Consensus 107 ~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 107 ALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHhccccchH
Confidence 888888888887663
No 89
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.32 E-value=2.9e-08 Score=122.19 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=145.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH----Hh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER----SL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~~~ay~~r----g~ 457 (714)
..+-..+...|++++|.+.|++..+.+ ....|..+...|.+.|++++|++.|.+..+. .|+ ...|... +.
T Consensus 476 nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k 554 (1060)
T PLN03218 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 333344444455555555555544432 1223333444455555555555555444332 121 1122111 12
Q ss_pred cCChhHHHHHHHHHHh----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCHHHH
Q 005106 458 YCEGDKRWEDLDKATA----LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~----LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--P~~~~~~~R~~~~~~lgd~e~A 531 (714)
.+..++|...|++..+ +.|+ ...|..+-.+|.+.|++++|+..|++..+.+ |+...|......|.+.|++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 2333555555544433 2333 2344444445555555555555555554432 2333344444444455555555
Q ss_pred HHHHHHHHhh--CCCchhhhhhHHHHHHHHHHHHhhhhhhH---------HHHHHhhhhccccccccc-hHHHHHHHHHh
Q 005106 532 LCDVQAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTI---------ADCWLQLYDRWSSVDDIG-SLSVIYQMLES 599 (714)
Q Consensus 532 l~d~~~al~L--~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------A~~~~~l~~~~~~~~d~~-al~~~~qaL~l 599 (714)
+.-|+...+. .|+...|..-..+....+.++...+.+++ ...|..+.......++.+ |...|+++.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5555544443 34422221111111111111111111111 112233333333344444 57788887664
Q ss_pred --CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHH
Q 005106 600 --DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEA 673 (714)
Q Consensus 600 --~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~~a 673 (714)
.| +...|+.+-..+.+.|++++|++.+++..+ +.|+ ...+..+-..+...|++++|+..+++.++ +.|+...
T Consensus 714 g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 714 KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 44 567899999999999999999999998765 4565 55777787889999999999999999987 5777664
Q ss_pred H
Q 005106 674 F 674 (714)
Q Consensus 674 ~ 674 (714)
|
T Consensus 792 y 792 (1060)
T PLN03218 792 C 792 (1060)
T ss_pred H
Confidence 4
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=1.2e-10 Score=135.02 Aligned_cols=297 Identities=13% Similarity=0.031 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP--LGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~--~~~ay~~rg~ 457 (714)
-+.++.-+|..|..--+...|.++|++|.++++.++ ..+.+..|....+.+.|.....++-+..|. --+.|..||-
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 367888899999998899999999999999977665 455677899999999998886666666664 2355566886
Q ss_pred cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005106 458 YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 458 ~~----~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~lgd~e~Al 532 (714)
|. ..-+|+.+|.-|++.+|.+...|..+|.+|.+-|++.-|+..|+||..++|.. ..-+.-+.....+|.|.+|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 53 33899999999999999999999999999999999999999999999999964 33455677899999999999
Q ss_pred HHHHHHHhhCCCchhh-------hhhHHH-----------------------HHHHHHHHHhhhhhhHH-----------
Q 005106 533 CDVQAILTLSPDYRMF-------EGRVAA-----------------------SQLHMLVREHIDNWTIA----------- 571 (714)
Q Consensus 533 ~d~~~al~L~P~~~~~-------~~~~~a-----------------------~~~~~~l~~~~~~~~~A----------- 571 (714)
.-+..++.--..+..+ +.|.+. ..+...+.....+|.-|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 9998887755444221 112220 01111111111122111
Q ss_pred ---------------------------------------------HHHHhhhhcccc--------cccc-chHHHHHHHH
Q 005106 572 ---------------------------------------------DCWLQLYDRWSS--------VDDI-GSLSVIYQML 597 (714)
Q Consensus 572 ---------------------------------------------~~~~~l~~~~~~--------~~d~-~al~~~~qaL 597 (714)
-.|-+++-..-+ .++. .|+-++-+++
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 011111111000 0122 1445666667
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
.++.++-.+|+.+|.+ -.-|.+.-|.-+|-+++.++|.++-++.|+|.+.....+++-|-+.+.++++|+|++- +|.-
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 7777777777777666 4456666666677777777777777777777777777777777777777777777665 5554
Q ss_pred HHH
Q 005106 677 KAY 679 (714)
Q Consensus 677 ~~~ 679 (714)
+|+
T Consensus 890 ~Al 892 (1238)
T KOG1127|consen 890 EAL 892 (1238)
T ss_pred HHH
Confidence 444
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=4.5e-09 Score=117.75 Aligned_cols=265 Identities=16% Similarity=0.048 Sum_probs=218.2
Q ss_pred ccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----HhcCChhHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLD 469 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~~~~~~eAl~d~~ 469 (714)
-|..++=...+++|+..- ....|...+.-+...|+.-.|...+..|++.+|++-..|..- +....++.|...|.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 477778888889998873 333455556678888999999999999999999988877665 34456699999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
||-...|+ ...|+.-+....-++..+||+..++++|+.-|+ +..|...|.++..+++.+.|...|..-++..|+-+
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-- 719 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-- 719 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc--
Confidence 99998887 457888888999999999999999999999998 45566689999999999999999999999999974
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (714)
....++..|++...+...| -++++++.-.+|.++.+|.-.=-.-.+.|+.+.|.....
T Consensus 720 ----pLWllLakleEk~~~~~rA------------------R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 720 ----PLWLLLAKLEEKDGQLVRA------------------RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred ----hHHHHHHHHHHHhcchhhH------------------HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666666666666666 678899999999999999888888888999999988888
Q ss_pred HHHHhCCC------------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHH
Q 005106 629 LARQHAAS------------------------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFF 675 (714)
Q Consensus 629 ~Al~l~P~------------------------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~---a~~ 675 (714)
+||+--|+ |+..+...|-.++...++++|...|+||..++|++. |||
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 88888874 555666777888888999999999999999999987 999
Q ss_pred HHHHHhhccC
Q 005106 676 LKAYALADSS 685 (714)
Q Consensus 676 ~~~~~~~~~~ 685 (714)
.|=++..-+-
T Consensus 858 ykfel~hG~e 867 (913)
T KOG0495|consen 858 YKFELRHGTE 867 (913)
T ss_pred HHHHHHhCCH
Confidence 9988876543
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=1.9e-10 Score=130.09 Aligned_cols=266 Identities=16% Similarity=0.057 Sum_probs=191.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CC-------CcHH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VT-------PLGW 450 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~p-------~~~~ 450 (714)
.|..-..+...+.|++|+.-++++....-.+++..++.... +. +..+..+.+.... .| .++.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~ 207 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQ--EE-DSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAE 207 (508)
T ss_pred HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccccc--cc-cccchhhHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 45566666677788888877776543321222222221111 11 0111111111111 22 3777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HH
Q 005106 451 MYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LE 513 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~L--------dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~-~~ 513 (714)
+|..+|++ ++|+.-+.+|++. .|..+...++.|.+|+.++++.+|+..|++|+.+ +|. ..
T Consensus 208 ~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 208 MYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 78888777 9999999999999 8888888899999999999999999999999987 233 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~-~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
.+.+++.+|...|++++|...+++|+++--.- ....++++ .......+......+++|.- ++.+ ++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~---l~q~--------al~ 353 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK---LLQK--------ALK 353 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH---HHHH--------HHH
Confidence 46778999999999999999999999975441 11233333 46667777778888888842 2221 344
Q ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 592 VIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 592 ~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.+.++..-+ |.-+..+.|+|.++..+|+++||.+.|++|+... +..+-.++++|..+++.+++++|-+.|+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 444444433 3667789999999999999999999999999886 4457789999999999999999999999
Q ss_pred HHHhcC
Q 005106 663 ESIQMK 668 (714)
Q Consensus 663 ~Ai~i~ 668 (714)
+++.|.
T Consensus 434 ~~~~i~ 439 (508)
T KOG1840|consen 434 EAKDIM 439 (508)
T ss_pred HHHHHH
Confidence 999984
No 93
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6e-10 Score=119.87 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=184.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHhc---
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G--~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--- 458 (714)
.+.+..++..|+++.|++.+.--=+.+. ..+..++..+++.+| ++..|-.+-..|+.++.-++.+..+.|+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3556677888999999887654322221 223346666778876 45566677777888888888899888863
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
|++++|.+-|..|+.-|...+++.+|.|..+-.+|+.++|+..|-|.-.+=. +.+.++..+.+|.-+.+..+||+.+.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999988766544 47888888899999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-HHHHhhhhccc--------------cccccc-hHHHHHHHHHhC
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA-DCWLQLYDRWS--------------SVDDIG-SLSVIYQMLESD 600 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-~~~~~l~~~~~--------------~~~d~~-al~~~~qaL~l~ 600 (714)
++..+=|+++. ....++.+...-.+-.+| .|+-.-|-... .....+ |+..+++|--+.
T Consensus 583 q~~slip~dp~------ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 583 QANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999999854 333333333322222222 11100000000 001111 355666666667
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS--HCEEGLRKAEESIQM 667 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G--~~eeAl~~ye~Ai~i 667 (714)
|+.+.-....+.|+.+.|.++.|...|+..-+.-|.+.+-+-.+--+--++| ++.|=-.+.+++-+|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki 725 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKI 725 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 7666666666677777777777777777777777776666666655555554 233334444444444
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.27 E-value=1.1e-08 Score=125.86 Aligned_cols=314 Identities=11% Similarity=0.000 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER--- 455 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~r--- 455 (714)
...|..+=..+...|++++|...|++..+.+ ....+..+-.+|.+.|+.++|.+.|++..+... ++...|...
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555566678899999999999988774 234566677789999999999999998887542 233444332
Q ss_pred -HhcCChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCH
Q 005106 456 -SLYCEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKLALECLELRFCFFLALEDY 528 (714)
Q Consensus 456 -g~~~~~~eAl~d~~kAi~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~----l~P~~~~~~~R~~~~~~lgd~ 528 (714)
.+.++.++|+..|++..+ +.|+ ...|+.+..++.+.|++++|...|++..+ +.|+...+......|.+.|++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 234556999999988754 4565 67899999999999999999999999865 577777777777789999999
Q ss_pred HHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH---------HHHHhhhhccccccccc-hHHHHHHH
Q 005106 529 QAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA---------DCWLQLYDRWSSVDDIG-SLSVIYQM 596 (714)
Q Consensus 529 e~Al~d~~~al~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------~~~~~l~~~~~~~~d~~-al~~~~qa 596 (714)
++|++.|+...+.+ |+-..|..-..++...+.++.+.+-+++. ..|..+.+.....++.+ |...+++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999998876 33333332233333333333333332222 23445555555556655 67788888
Q ss_pred HHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCH
Q 005106 597 LESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF 671 (714)
Q Consensus 597 L~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~ 671 (714)
++.. +-+...|+.+...+.+.|+.++|++.|+...+ +.|+ ...+..+-..+.+.|++++|+..+++... +.|+.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8764 34567788888888888888888888887754 4554 55677788888888888888888886554 57887
Q ss_pred HHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 672 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
..|..---++.... .-....++++++.
T Consensus 755 ~Ty~sLL~a~~k~G----~le~A~~l~~~M~ 781 (1060)
T PLN03218 755 ITYSILLVASERKD----DADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 76654444433322 2334555555544
No 95
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.27 E-value=4.7e-09 Score=125.19 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CC------cHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TP------LGWM 451 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~------~~~a 451 (714)
...+..+...+.+.|++++|++.|++.++.+. ...+..+-.++...|....+...+..+++.. |+ +-.+
T Consensus 189 ~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 44566666777777777777777777765531 1222222233333344444433333333221 10 1122
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 005106 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 452 y~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e 529 (714)
|.+. ++.++|...|++. .+.+...|+.+...|.+.|++++|+..|++..+ +.|+...+.....++...|+++
T Consensus 269 y~k~---g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 269 YSKC---GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHC---CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 2222 3335666555543 234555666666666666666666666665543 3444444444445555555555
Q ss_pred HHHHHHHHHHhh
Q 005106 530 AALCDVQAILTL 541 (714)
Q Consensus 530 ~Al~d~~~al~L 541 (714)
+|.+.+..+++.
T Consensus 343 ~a~~i~~~m~~~ 354 (697)
T PLN03081 343 HAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=2.2e-09 Score=131.25 Aligned_cols=269 Identities=16% Similarity=0.085 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------- 447 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-------~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------- 447 (714)
......+|.++...|++++|...+++|++..+ ..+...+|.++...|++++|...+.+++.....
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 44445688999999999999999999988411 124456788999999999999999999876332
Q ss_pred -----cHHHHHHHHhcCChhHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----
Q 005106 448 -----LGWMYQERSLYCEGDKRWEDLDKATALDPT--------LSYPYMYRASSLMTKQNVEAALAEINRILGFKL---- 510 (714)
Q Consensus 448 -----~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~--------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---- 510 (714)
.+.++..+ |+.++|...+++++++-.. ....+..+|.++...|++++|...+++++.+..
T Consensus 532 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 532 WSLLQQSEILFAQ---GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 23333333 4559999999998886322 234567889999999999999999999988632
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 005106 511 A--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 511 ~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 587 (714)
. ...+..++.++...|++++|.+.++++.++.+.... ..................++.+.|..|..
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~----------- 677 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLR----------- 677 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH-----------
Confidence 2 333455788999999999999999999887554311 00000011111122223445555544322
Q ss_pred chHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHH
Q 005106 588 GSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeA 657 (714)
+.....+... ..+..+|.++..+|++++|...+++|++... .-+.++..+|.+++..|+.++|
T Consensus 678 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 678 -------QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred -------hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2211111111 2256789999999999999999999998743 3456889999999999999999
Q ss_pred HHHHHHHHhcCCCHH
Q 005106 658 LRKAEESIQMKRSFE 672 (714)
Q Consensus 658 l~~ye~Ai~i~~~~~ 672 (714)
...+++|+++-....
T Consensus 751 ~~~L~~Al~la~~~g 765 (903)
T PRK04841 751 QRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHhCccc
Confidence 999999999854433
No 97
>PLN03077 Protein ECB2; Provisional
Probab=99.26 E-value=6.1e-09 Score=127.04 Aligned_cols=324 Identities=10% Similarity=-0.008 Sum_probs=195.4
Q ss_pred ccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh
Q 005106 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419 (714)
Q Consensus 340 v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~ 419 (714)
+.+..+.+..+++-..... ..+...+++..+.+... ..+...+..+-..+...|++++|.+.|++..+ ....+|.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g--~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLG--DERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH
Confidence 3445555555655443321 23334445544443221 11345667778888899999999999998543 3345677
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhc--CCC---cHHHHHHHHhcCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcC
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISS--VTP---LGWMYQERSLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQ 493 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~--~p~---~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~-~~~ay~~rg~~l~~l~ 493 (714)
.+...|.+.|++++|++.|++..+. .|+ ...+....+..++.++|.+.++.+++.... +...|+.+...|.+.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 7888899999999999999877654 344 233333334455668888888888887543 4567888888999999
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-
Q 005106 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIA- 571 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~-L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A- 571 (714)
++++|...|++.. +|+...|......|...|++++|+..|++... +.|+...+..-..+....+.++...+-+..+
T Consensus 439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999998875 46666677777778888999999999988874 4677655444333333333333332222211
Q ss_pred --------------------------------------HHHHhhhhccccccccc-hHHHHHHHHHhC--CCChhHHHHH
Q 005106 572 --------------------------------------DCWLQLYDRWSSVDDIG-SLSVIYQMLESD--APKGVLYFRQ 610 (714)
Q Consensus 572 --------------------------------------~~~~~l~~~~~~~~d~~-al~~~~qaL~l~--P~~~~~~~~~ 610 (714)
.+|..+...+...++.+ |+..|++|.+.. |+ ...+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHH
Confidence 22333333333334444 555666655532 33 2333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l---~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
-.++.+.|+.++|++.++...+. .|+ .+.+..+..+|.+.|+++||...+++ +.++|+...
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~ 659 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAV 659 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHH
Confidence 34455556666666666655532 232 34555555666666666666655554 345555553
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.2e-09 Score=108.08 Aligned_cols=274 Identities=15% Similarity=0.039 Sum_probs=199.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHh--
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GWMYQERSL-- 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-----~~ay~~rg~-- 457 (714)
|-.|+-++...+.++|+..|-..++.++ ..++.-+|+.+..+|..+.||+.....+ ..|++ ..+.+++|+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence 3456667777788888888888877754 3456678888888888888887765333 34432 223333332
Q ss_pred --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHH---HHHHHHHHHhcCCHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LEC---LELRFCFFLALEDYQ 529 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~---~~~R~~~~~~lgd~e 529 (714)
.|.+|.|-..|..-++..---..|.-.+-++|...+.++.||...++...+.|+ .+. +--++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 133377777787777655555667777888888888888888888888888774 222 222556677777888
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~-~~~~~ 608 (714)
.|+..+.+|++-||+. +.+...+|.+.....++++| +..++++++-||.. ++...
T Consensus 198 ~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~A------------------V~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 198 RARELLKKALQADKKC------VRASIILGRVELAKGDYQKA------------------VEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHH------------------HHHHHHHHHhChHHHHHHHH
Confidence 8888888888888887 44666667777777777777 66777888888775 34566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ 686 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~ 686 (714)
.+..++..+|++++.+..++++.+..+... +...+........-.++|-+...+=+.-+|+.- -+.+-.|-++|-+=
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 778899999999999999999999999854 555566666666667888889999999999999 67789999999764
No 99
>PLN03077 Protein ECB2; Provisional
Probab=99.25 E-value=5.4e-08 Score=118.80 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----Hh-
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SL- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~- 457 (714)
...+..+-..|...|++++|.+.|++..+. ...+|..+...+.+.|+.++|+..|++.+...+++...|... +.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 345566777888889999999988875443 344677777788888999999888888775433333222111 11
Q ss_pred ----------------------------------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 ----------------------------------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 458 ----------------------------------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~ 503 (714)
.++.++|+..|+.. +.+...|+.+...|...|+.++|+..|+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 12335555555543 3344555555555555555555555555
Q ss_pred HHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 504 RILG--FKLALECLELRFCFFLALEDYQAALCDVQAILT---LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 504 kAL~--l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~---L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
+.++ +.|+...+...-..+...|++++|...|+...+ +.|+-.. ..|.+.++
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-----------------------y~~lv~~l 635 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-----------------------YACVVDLL 635 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-----------------------HHHHHHHH
Confidence 5544 344433333333345555555555555555542 2344211 11122222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 657 (714)
-+ .++.+ |...++++ .+.|+ +..|..+-.+...-|+.+.|....+++++++|+++..++.+++++...|++++|
T Consensus 636 ~r---~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GR---AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred Hh---CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 22 22222 35566665 35555 455655555667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005106 658 LRKAEESIQ 666 (714)
Q Consensus 658 l~~ye~Ai~ 666 (714)
....+.-.+
T Consensus 711 ~~vr~~M~~ 719 (857)
T PLN03077 711 ARVRKTMRE 719 (857)
T ss_pred HHHHHHHHH
Confidence 988776654
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.8e-09 Score=115.62 Aligned_cols=251 Identities=14% Similarity=0.001 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
...+..++. .+|...+.-+. .-..|......|+++.-...-...+.+ .++.-|+--|.+.+...++..|+..-.|
T Consensus 249 ~~a~~~Fe~-~~~~dpy~i~~--MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSS-TLCANPDNVEA--MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHH-HhhCChhhhhh--HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 344555666 44443332222 233466667778887766666665555 3444566667788899999999999999
Q ss_pred HHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 005106 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL 515 (714)
Q Consensus 441 aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~ 515 (714)
+|..+|++-.+|...|.. ++.++|+-.|+.|+.|.|-....|-.+-..|...|++.||+...+-++..=|+ ...+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 999999999999888753 56699999999999999999999999999999999999999999999988775 7777
Q ss_pred HHHH-HHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 516 ELRF-CFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 516 ~~R~-~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
...| .++ ..----|+|..-++++++++|+|..+ .... | .|..+.+..+|+ ++.+
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A------V~~~------------A----EL~~~Eg~~~D~--i~LL 461 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA------VNLI------------A----ELCQVEGPTKDI--IKLL 461 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH------HHHH------------H----HHHHhhCccchH--HHHH
Confidence 7776 333 33334689999999999999999532 2222 1 233333344444 8999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
++.|...|.+ .+|.-+|.++...|-+++||+.|..|++++|++--++
T Consensus 462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999998875 6799999999999999999999999999999988654
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.19 E-value=6.1e-10 Score=127.53 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=110.5
Q ss_pred CHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 511 ALECL--ELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 511 ~~~~~--~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
++++| +.||.-+...++ .+.|+..|++|+++||+|..++...+..+... ..|... . ..
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~------~~~~~~----------~-~~ 398 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR------HSQQPL----------D-EK 398 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HhcCCc----------c-HH
Confidence 34544 557776665555 88999999999999999955433221111110 000000 0 00
Q ss_pred ccc-hHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 586 d~~-al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
+.. +.....+++++ +|.++.+|.-+|......|++++|++.+++|++++| ++.+|..+|.++...|++++|++.|+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 23456677774 899999999999999999999999999999999999 58999999999999999999999999
Q ss_pred HHHhcCCCHHHHHH
Q 005106 663 ESIQMKRSFEAFFL 676 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~ 676 (714)
+|+.++|+++.|++
T Consensus 478 ~A~~L~P~~pt~~~ 491 (517)
T PRK10153 478 TAFNLRPGENTLYW 491 (517)
T ss_pred HHHhcCCCCchHHH
Confidence 99999999997765
No 102
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.4e-09 Score=113.37 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC---
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC--- 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~--- 459 (714)
|..+.|++.+..|+|++|.+.|+.||.-+. ..++++.|..+-.+|+.++|+.+|-+.-.+--+++..+.+.+.++
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345567777777777777777777776643 446677777777777777777777776666666666666665432
Q ss_pred -ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 460 -EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 460 -~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
....|++.|.+|..+-|+++.....+|.+|-+.|+-.+|...+=..-.+=| +.+....++.-|....=+++||..|++
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 336677777777777777777777777777777777777777766666666 356556666667777777777777777
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
|--+.|+-.-+ ++. .|-|+ - +.+.+. |+..|.+.....|.+.+..-.+-.+--.
T Consensus 652 aaliqp~~~kw-------qlm-----------iasc~----r---rsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 652 AALIQPNQSKW-------QLM-----------IASCF----R---RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHhcCccHHHH-------HHH-----------HHHHH----H---hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 77777774211 110 12111 1 112222 4778888888889888766444444444
Q ss_pred cCChHHHHHHHH
Q 005106 617 LNCPEAAMRSLQ 628 (714)
Q Consensus 617 lg~~eeAl~~~~ 628 (714)
+|--+ |.+..+
T Consensus 707 lgl~d-~key~~ 717 (840)
T KOG2003|consen 707 LGLKD-AKEYAD 717 (840)
T ss_pred ccchh-HHHHHH
Confidence 55433 444433
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.18 E-value=2.1e-10 Score=126.04 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..++..|++ ++|+..|++||+++|+++.+|.+||.++..+|++++|+.++++||+++|+ +.+++.+|.++..+|+
T Consensus 9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3344444444 88999999999999999999999999999999999999999999999996 7888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh
Q 005106 528 YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~ 547 (714)
+++|+..|+++++++|++..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999854
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=4.4e-10 Score=123.44 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+...|..+...|++++|+..|++||+++|+ +.++.+||.+|..+|++++|+.++++|++++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456788888899999999999999999996 7888889999999999999888887777777765
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4567889999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005106 641 LVYEGWILYDT 651 (714)
Q Consensus 641 ~~~~G~~ly~~ 651 (714)
+..++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 98888886655
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.16 E-value=3.3e-09 Score=108.60 Aligned_cols=177 Identities=16% Similarity=0.018 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
..+...+-++...+|++... .+++..+...|+-+.++....++.--.|. .+.+...|......|++.+|+..++++.+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 45666777788888888888 88888888888888888888887666664 56566677778888888888888888888
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++ ..++..++.......+.+.| -.-|.|++++.|+++...+|+|..+.-.|+.
T Consensus 129 l~p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 88887 44555555555555555555 3457888888888888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+.|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999988888888999999999999999988755444
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.4e-08 Score=114.29 Aligned_cols=290 Identities=13% Similarity=-0.015 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC--
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC-- 459 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~-- 459 (714)
.+++....-..+.|+|....+..++.|+. .|.++++-.|..+.-+|+.++|+.....++..++.....|.-.|.+.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 44555555667788999999999999887 68889999999999999999999999999999999888888887653
Q ss_pred --ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 --EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 --~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++++|+.+|..|+.++|+|.+.|..++....++++++.....-++-++++|+ -..|...+..+...|++..|+.-.+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999997 4556667788999999999988777
Q ss_pred HHHhhC---CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---ChhHHHHH
Q 005106 537 AILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQ 610 (714)
Q Consensus 537 ~al~L~---P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---~~~~~~~~ 610 (714)
.-.... |.... +-+.....-+..+....+..++| ++.-....|. ..-....+
T Consensus 168 ef~~t~~~~~s~~~-~e~se~~Ly~n~i~~E~g~~q~a---------------------le~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 168 EFEKTQNTSPSKED-YEHSELLLYQNQILIEAGSLQKA---------------------LEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHhhccCCCHHH-HHHHHHHHHHHHHHHHcccHHHH---------------------HHHHHhhhhHHHHHHHHhhhH
Confidence 666654 43211 11111111111111111112222 1111111111 12234568
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCC
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDS 688 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~ 688 (714)
|.++.++|++|+|...|+.-+..+|+|.+=+..+-.++. -++..+.=-+.|.+.-+.=|-++ .=++==..+-++++--
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 899999999999999999999999999987777767774 44443333366777666655555 3233333344444443
Q ss_pred CchhhHH
Q 005106 689 SCSSTVV 695 (714)
Q Consensus 689 ~~~~~~~ 695 (714)
.-+.++.
T Consensus 306 ~vdkyL~ 312 (700)
T KOG1156|consen 306 IVDKYLR 312 (700)
T ss_pred HHHHHHH
Confidence 3333333
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.12 E-value=3.3e-09 Score=108.60 Aligned_cols=164 Identities=16% Similarity=0.007 Sum_probs=136.0
Q ss_pred HHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcC
Q 005106 402 AEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALD 475 (714)
Q Consensus 402 A~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~Ld 475 (714)
|...+-++...+| ... .+++..++..|+-+.+.....++.-.+|..+..+...| ..+++.+|+..+.+|.+++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3344444444433 445 78888999999999999999988888887766663332 2356699999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|+++.+|+-+|.+|.++||+++|-..|++|+++.|+ +....|.|+.+.-.||++.|...+..+...-|.+ ..+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v 204 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRV 204 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHH
Confidence 999999999999999999999999999999999996 8889999999999999999999999999988876 446
Q ss_pred HHHHHHHHHhhhhhhHHH
Q 005106 555 SQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~ 572 (714)
.+.+.++...+.++..|.
T Consensus 205 ~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 205 RQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHHhhcCChHHHH
Confidence 677777777777777774
No 108
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.10 E-value=8.2e-08 Score=91.71 Aligned_cols=233 Identities=22% Similarity=0.183 Sum_probs=148.2
Q ss_pred ccchHHHHHHHHHHHhccch----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAGHI----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKA 471 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kA 471 (714)
.+.+..+...+..++...+. ......+..+...|++..++..+ ..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~ 85 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELL------------------------------EKA 85 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHH------------------------------HHH
Confidence 34556666666666655332 33344444555555555554444 444
Q ss_pred Hh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC-ch
Q 005106 472 TA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFC-FFLALEDYQAALCDVQAILTLSPD-YR 546 (714)
Q Consensus 472 i~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~-~~~~lgd~e~Al~d~~~al~L~P~-~~ 546 (714)
+. ..|.....+...|..+...+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+++..+|. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (291)
T COG0457 86 LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE 165 (291)
T ss_pred HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Confidence 43 566666666666666666666777777777777666643 22333344 677777777777777777666663 10
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
. .......+.......+++. ++..+.+++...|. ....+.+.+..+...+..++|+.
T Consensus 166 ~----~~~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 166 L----AEALLALGALLEALGRYEE------------------ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred h----HHHHHHhhhHHHHhcCHHH------------------HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 0 1111111111111112222 35667777777777 68888888888899999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.+..++...|+........+.++...|.++++...+++++...|. ++..|+.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL 278 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence 999999999998888899999999778899999999999999987 4444444433
No 109
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=2.3e-09 Score=118.18 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=121.5
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHH---hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccccc--cc
Q 005106 516 ELRFCFFLALE---DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWSSV--DD 586 (714)
Q Consensus 516 ~~R~~~~~~lg---d~e~Al~d~~~al---~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~~~--~d 586 (714)
+.||.-....+ +.+.|+..|.+|+ ++||+|..+++-. |.|+++. .-.|+.. +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~l------------------A~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLL------------------AECHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHH------------------HHHHHHHHHhcCCCchHHH
Confidence 45555443322 5667888888888 8888886544332 2233333 3334331 12
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+++...++|+++||.++.+++..|.++...|+++.|+..+++|+.++|+++.++++.||++.-.|+.++|++..++|++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH--hhccCCCC
Q 005106 667 MKRSFE-AFFLKAYA--LADSSQDS 688 (714)
Q Consensus 667 i~~~~~-a~~~~~~~--~~~~~~~~ 688 (714)
+.|.=. |=-+|=+. +.-+.||-
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCCchhh
Confidence 999887 77777665 55666663
No 110
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=2.8e-10 Score=94.22 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G-~~eeAl~~ye~Ai~i~~ 669 (714)
++..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|+..+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 68899999999999999999999999999999999999999999999999 79999999999999998
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=4.6e-10 Score=92.94 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L~P 543 (714)
+++..|.++|.+++.+|++++|+..|++||+++|+ +..++++|.++..+| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999997 888999999999999 79999999999999998
No 112
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.07 E-value=1.2e-10 Score=121.84 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=146.4
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
.-|+-|+.+|.| +|||.+|.++|.++|.++-.|.|||.+|..+++|..|..|.+.||.||-. ..+|..|+.+...+
T Consensus 102 E~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred Hhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356667777666 89999999999999999999999999999999999999999999999876 56677789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHH--HHHHHHhhhhhhHHH-HHHhhh-hccccc------cccchHHHHH
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVA-ASQL--HMLVREHIDNWTIAD-CWLQLY-DRWSSV------DDIGSLSVIY 594 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~--~~~l~~~~~~~~~A~-~~~~l~-~~~~~~------~d~~al~~~~ 594 (714)
|..++|..||+.+|+|.|+.....-..+ ...+ ...+...-.-+..|. ...|.. .+-..+ ..-.++.++-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~ 258 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVV 258 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEee
Confidence 9999999999999999999743211000 0000 000000000000000 000100 000000 0111344555
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+---.|...|+-+.++-++.+.|..+
T Consensus 259 ~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 259 SPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred ccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 555666666666666 66667777777777777777777777766666677777777777777777777777766654
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.07 E-value=2.8e-09 Score=102.47 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCHHHHHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSFEAFFLKA 678 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~---~~~~a~~~~~ 678 (714)
+++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.|++..|+.++|.+.|+.||++- |.+..---||
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 356678888888888888888888888888888888888888888888888888888888888763 5554444444
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.3e-08 Score=112.51 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=180.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
.+..++|...++.....++..|..|..+-..|. .++.++|...-..+++.||....-|.-.|.++...++|+|||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 467789999999999999999999999888875 3566999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
.|+.|+.+.|+ .+.|.-.+.+...+||++....--.+.+++.|.+.+ +.|-..+..+.+.-..+....++.. +.-
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~---~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE---KTQ 173 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 99999999996 788888999999999999999999999999999865 4555555555554444444333332 111
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.-. +-.++++ .++...+...+...|.+++|++....-=..--|.---.-.+|.++.++|+.++|+
T Consensus 174 ~~~~------s~~~~e~--------se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 174 NTSP------SKEDYEH--------SELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred ccCC------CHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 0000 0111222 2233445566777888777776654432222223333456789999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHH
Q 005106 659 RKAEESIQMKRSFEAFFLKAY 679 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~a~~~~~~ 679 (714)
..|..-|..+|+.-+|+..-.
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHH
Confidence 999999999999998876543
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=9.6e-08 Score=100.20 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 364 KTVCFLERLLESA-ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 364 ~~~~LLe~Lv~~a-~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
.+..+=+.|.+.| ..+-++..|..++|.-|...|-||.|+..|...++.+ -..|...+-.+|....++.+|++.-++
T Consensus 87 RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~ 166 (389)
T COG2956 87 RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER 166 (389)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444 3455677888889999999999999999998877752 244666777888888888888888888
Q ss_pred HHhcCCC-----cHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 441 VISSVTP-----LGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 441 aI~~~p~-----~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
...+.+. .+.-|.+.+.- ...+.|+..+.||++-||+.+.|=+-+|.+.+..|+|+.|+..++++++.||+
T Consensus 167 L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 8777553 45566665432 23377888888899999999988888999999999999999999999988887
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 512 --LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 512 --~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
++.+..+..+|..+|+.++.+.-.+++.+..|+-
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 5666777788899999999988888888888774
No 116
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=9.4e-09 Score=102.33 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCC----hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 005106 449 GWMYQERSLYCE----GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFL 523 (714)
Q Consensus 449 ~~ay~~rg~~~~----~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~ 523 (714)
+.++++||.+++ ..-|.-||++|+.+.|+.+.+++.+|.-+...|+|+.|.+.|+-.+++||.. -+..|||..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 455566665432 2666779999999999999999999999999999999999999999999975 44567999889
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
.-|++.-|.+|+.+--+-||+++. |.-=.. +-+..-+..+|. ....+|+-.++-..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLY----l~E~k~dP~~A~-----------------tnL~qR~~~~d~e~ 200 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF---RSLWLY----LNEQKLDPKQAK-----------------TNLKQRAEKSDKEQ 200 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH---HHHHHH----HHHhhCCHHHHH-----------------HHHHHHHHhccHhh
Confidence 999999999999999999999863 000000 111111222221 22334444433221
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
..|+-.+ ..+|... -...++++.+-..++ .|+++++|-.+...|+.++|...|.=||+-+
T Consensus 201 -WG~~iV~---~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 201 -WGWNIVE---FYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -hhHHHHH---HHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1122222 2233332 112223333333332 5789999999999999999999999999863
No 117
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.03 E-value=9.8e-07 Score=99.46 Aligned_cols=251 Identities=10% Similarity=-0.040 Sum_probs=179.3
Q ss_pred HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC----ChhHHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC----EGDKRWEDL 468 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~----~~~eAl~d~ 468 (714)
....+++.|...|.+|-.. +-...|..-+++..-+|..++|++.++++++.+|.....|...|++. ..+.|.+.|
T Consensus 629 ~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456777777777777666 44455666666666777777777777777777777777777776642 236677777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 469 ~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
..-+...|+....|..++.+--..|+.-.|-..++|+.--||. ...|...-..-+..|+.+.|.....+||+-.|+...
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 7777778887777777777777777777777778877777775 444444444566777777777777777777777621
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
.....=-+....++- .-.-.||..+-++++...-.|.++..-..++.|..+|
T Consensus 789 ------LWaEaI~le~~~~rk----------------------Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 789 ------LWAEAIWLEPRPQRK----------------------TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred ------hHHHHHHhccCcccc----------------------hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 1235678888899999999999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|+.++|++++++.+.=-.....|.-+.-...|.+-..-.|.+.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 999999999999988877777778877777777777777777654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.03 E-value=2.8e-08 Score=118.49 Aligned_cols=254 Identities=11% Similarity=-0.022 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
+..++..+...+...+++++|++..+.+++..| ...++.+|.++++.|++..|... +++..-+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---------- 97 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---------- 97 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----------
Confidence 345667788888899999999999999998854 55678889999999997777554 4444433221
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
. ..++++|-+.+...|++-.|++.+|.+|-.+|+.++|.+.|+++|+++|+ +.++++.|..|... +.++|+..+.+|
T Consensus 98 ~-~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 K-WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred c-hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 0 24556666666667777777777777777777777777777777777774 67777777777777 777777777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---ChhHHHHHHHHHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLL 615 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---~~~~~~~~g~~L~ 615 (714)
++..=+...+ ....+. |..+.+. ..+|+.-+..+.+.|.-.-+ -++++.-.=..+-
T Consensus 176 V~~~i~~kq~-------------~~~~e~------W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 176 IYRFIKKKQY-------------VGIEEI------WSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHhhhcc-------------hHHHHH------HHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 7652221110 011111 2222221 12223223333333332222 2222333333444
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHhcCCC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT--------------------SHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~--------------------G~~eeAl~~ye~Ai~i~~~ 670 (714)
.++++.+++..++.+|+++|+|..|...+..++-.. ..+..++..||+=|..++.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence 455555566666666666666555555555554322 3467788888888777665
No 119
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=1.4e-08 Score=112.03 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=110.3
Q ss_pred hHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 462 DKRWEDLDKAT---ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 462 ~eAl~d~~kAi---~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+.|+..|++|+ ++||+++.||..++.+++... ..|+.- ...+..+|++.-++|
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rA 330 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHH
Confidence 45555566666 666666666666555554320 000000 123455677777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
+++||+++. +....+.+.....+++.| .+.++||++++|+++.+|+..|.++..-|
T Consensus 331 veld~~Da~------a~~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 331 SDITTVDGK------ILAIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred HhcCCCCHH------HHHHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 777777744 333334333444444444 66788888888888999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~A 664 (714)
+.++|++.+++|++++|.-.-|-...-|+ .|.....++|++.|-+-
T Consensus 387 ~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 387 KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 99999999999999999999999999999 99999999999988653
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=2.6e-09 Score=102.76 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|...|+-...+||.++..|+++|.++..+|++++||..|.+|+.++|+ |..+++.|.++..+|+.++|.+.|+.|+.
T Consensus 52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred hCC
Q 005106 541 LSP 543 (714)
Q Consensus 541 L~P 543 (714)
..-
T Consensus 132 ~~~ 134 (157)
T PRK15363 132 ICG 134 (157)
T ss_pred Hhc
Confidence 873
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=1.4e-07 Score=115.41 Aligned_cols=280 Identities=10% Similarity=-0.019 Sum_probs=190.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-c------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-G------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GW 450 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~------~----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-----~~ 450 (714)
..++.+....|++++|...+.+|.+. . + ......+|.++...|++++|...+.++++..+.. +.
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 45677788899999999999988654 1 1 1223456788999999999999999999864431 22
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C----
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL-----A---- 511 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~---- 511 (714)
++...|. .++.++|...+++|+++.... ..++.++|.++...|++++|...+++++.+-. .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3333332 356699999999999774432 34667899999999999999999999998621 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
...+..++.++...|++++|...+++++++...... .....+....+.+.....+++.| ..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A------------------~~ 633 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA------------------RR 633 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH------------------HH
Confidence 122345778889999999999999999987553211 01122333444445555555555 55
Q ss_pred HHHHHHHhCCCCh---hHHH----HHHHHHHHcCChHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhcCCHHHHHHH
Q 005106 592 VIYQMLESDAPKG---VLYF----RQSLLLLRLNCPEAAMRSLQLARQHAASDHER----LVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 592 ~~~qaL~l~P~~~---~~~~----~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea----~~~~G~~ly~~G~~eeAl~~ 660 (714)
.+++++.+.+... .... .....+...|..++|.+.+++.....+..... +.++|.++..+|++++|+..
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666665533221 1111 12345566899999999988876644333322 46899999999999999999
Q ss_pred HHHHHhcCCC------HH-HHHHHHHHhhccC
Q 005106 661 AEESIQMKRS------FE-AFFLKAYALADSS 685 (714)
Q Consensus 661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~ 685 (714)
++++++.... .. +..+.|.++.-.+
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 9999986211 11 4555666655444
No 122
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=1.2e-06 Score=94.42 Aligned_cols=277 Identities=16% Similarity=0.118 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCc------HHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPL------GWMY 452 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~------~~ay 452 (714)
+...-+-|...+.-|+|..|++...++-+-. |.-++..-+++-.++|+.+.|=.+++++-+. +++. +...
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4445567888899999999999999976664 4444555577899999999999999999998 4432 3333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CHHHHHHHHH--HHHhcC
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFC--FFLALE 526 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P----~~~~~~~R~~--~~~~lg 526 (714)
.++|.| ..|..-.+++.+..|.++....-.--+|...|++++.+....+.-+-.- ...-+.+.++ ++.+.+
T Consensus 164 l~~~d~---~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 164 LNRRDY---PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HhCCCc---hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 444444 9999999999999999999999999999999999999988877665433 1333444443 344444
Q ss_pred CHHHHHH------HHHHHHhhCCCchhhh-hh-------HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 527 DYQAALC------DVQAILTLSPDYRMFE-GR-------VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 527 d~e~Al~------d~~~al~L~P~~~~~~-~~-------~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+-+.+.- +..+.++-+|.-...+ -+ ..|... ..+...++|+.= +..+++++.--|.-.=+..
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~--i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI--IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH--HHHHHHhccChh--HHHHHhhcCCCCchHHHHH
Confidence 4443333 2233444455432211 00 001111 112222222222 2344444333332223557
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++|-+.+++++.+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888876 456777888888888888888888887754
No 123
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=8e-09 Score=118.46 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g---~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..++.+|..+..++ .+..|+.+|++||+++|.++ +.+++.++.....+. + .. .+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~-~~-----~~~ 399 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------P-LD-----EKQ 399 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------C-cc-----HHH
Confidence 344466776666543 47788888888888866554 344444443221111 1 00 001
Q ss_pred cCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
...+.....+|+.+ +|..+.+|.-+|.+....|++++|...++||++++|+...|..+|.++...|++++|+..|
T Consensus 400 ---l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 ---LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ---HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 14555666777774 8888899999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHhhCCCchhh
Q 005106 536 QAILTLSPDYRMF 548 (714)
Q Consensus 536 ~~al~L~P~~~~~ 548 (714)
++|+.++|.+..+
T Consensus 477 ~~A~~L~P~~pt~ 489 (517)
T PRK10153 477 STAFNLRPGENTL 489 (517)
T ss_pred HHHHhcCCCCchH
Confidence 9999999998643
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.98 E-value=8e-09 Score=101.56 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------------CEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~--------------~eeAl~~ye~Ai~i~~~~ 671 (714)
+++++|.++.++|++++|+..+++|+++.|++..++.++|+++..+|+ +++|++.+++++.++|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 344445555555555555555555555555555555555555555444 677777777777777765
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=9.4e-09 Score=109.75 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=172.8
Q ss_pred HhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE 466 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~ 466 (714)
+-.|.|..++..++ .....+ ......+.|.+..+|++...+....+.- .|.+. +......| ...+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHHHH
Confidence 45688888887776 112222 2345678889999999988776654311 34332 22222222 12356666
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 467 DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 467 d~~kAi~LdP--~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.++..+.-.. .++....--|.++...|++++|+..+.+. .+.++...+-.+++.++|.+.|.+.++..-+.+.|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6655443332 34455566778888899999999988775 34676666778999999999999999999999988
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
.. ..+ .|.+|+.++..-..+.+ |.-.|+...+..|.++...+.++.+...+|+++||.
T Consensus 164 ~~-------l~q-------------La~awv~l~~g~e~~~~--A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 164 SI-------LTQ-------------LAEAWVNLATGGEKYQD--AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HH-------HHH-------------HHHHHHHHHHTTTCCCH--HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HH-------HHH-------------HHHHHHHHHhCchhHHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 53 222 37789888876433322 588999988888999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCH
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR-KAEESIQMKRSF 671 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~-~ye~Ai~i~~~~ 671 (714)
+.+++|++.+|++++++.|+..+-+.+|+-.++.. ..++.-...|+-
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999955554 444444467754
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=1.2e-08 Score=99.89 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 495 VEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
+..+.+.+.+.+..++. ...+++.|.++..+|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 44555555555555552 45566677788888888888888888888776531
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--
Q 005106 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-- 649 (714)
Q Consensus 572 ~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-- 649 (714)
..+.+|+++|.++..+|++++|+..+++|++++|.+++.+.++|.+++
T Consensus 70 ------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 70 ------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred ------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 112367888889999999999999999999999999999888888888
Q ss_pred -----hcCCHH-------HHHHHHHHHHhcCCC
Q 005106 650 -----DTSHCE-------EGLRKAEESIQMKRS 670 (714)
Q Consensus 650 -----~~G~~e-------eAl~~ye~Ai~i~~~ 670 (714)
.+|+++ +|+..|++++..+|.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 777766 455555556666664
No 127
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.95 E-value=7.1e-09 Score=110.99 Aligned_cols=62 Identities=13% Similarity=-0.037 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.+|+.+..+..++.|+...++=+.+.- ....+.|.+|..+-.+|..++|+-..++++.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999988887666543 45678999999999999999999999988875
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.95 E-value=1e-08 Score=122.21 Aligned_cols=155 Identities=7% Similarity=-0.087 Sum_probs=136.3
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
+...+|++..++..+..++...|++++|+...+.+++..|+ ...++..|.++...+++++|..- .++.+-|++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence 45678999999999999999999999999999999999997 78888899999999998877776 666655554
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
.+...+..+.+.+.-.|.+-.+++.+|.++.++|+.++|.+.|++
T Consensus 97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122235667777777899999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 630 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+++++|+|+.+++|+|-.|-.. ++++|...|.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999986
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=1.8e-08 Score=91.01 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..++.+|..+...|++++|+..|++++..+|+ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 45566666666666666666666666666653 2344556666666666666666666666666654
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=1.5e-08 Score=91.55 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+.++..|..+...|++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------------- 35 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----------------------------------------------- 35 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------------------------
Confidence 456778888899999999999999998888875
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|..+.+++.+|.++.+.|++++|+..+++++...|++ +++++.+|+++..+|++++|+..+++++...|
T Consensus 36 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 36 --------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred --------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 1224567889999999999999999999999999885 67899999999999999999999999999999
Q ss_pred CHH
Q 005106 670 SFE 672 (714)
Q Consensus 670 ~~~ 672 (714)
+..
T Consensus 108 ~~~ 110 (119)
T TIGR02795 108 GSS 110 (119)
T ss_pred CCh
Confidence 876
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.93 E-value=2.8e-09 Score=117.37 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=83.9
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHH
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEA 673 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea---~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~a 673 (714)
+-+|+++.+|+|+|.+|..+|++++|+..|++|++++|+++++ |+|+|.+|..+|++++|++.+++||++ +|.|.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~- 147 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS- 147 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence 3689999999999999999999999999999999999999976 999999999999999999999999998 44443
Q ss_pred HHHHHHHhhccCCCCC-chhhHHHHHHHhhcC
Q 005106 674 FFLKAYALADSSQDSS-CSSTVVSLLEDALKC 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 704 (714)
++..|..+||= .....-+|+|++-++
T Consensus 148 -----~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 -----TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 45677766543 223445566665543
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.90 E-value=2.2e-08 Score=92.48 Aligned_cols=87 Identities=24% Similarity=0.275 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHhcCCHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L--ECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~--~~~~~R~~~~~~lgd~e~Al~ 533 (714)
++.++|++-|.+||.+.|..+.+|+||+.++.-+|+.++|+.+++||+++..+ . .++..||.+|..+|+.+.|.+
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44499999999999999999999999999999999999999999999999653 2 345669999999999999999
Q ss_pred HHHHHHhhCCCc
Q 005106 534 DVQAILTLSPDY 545 (714)
Q Consensus 534 d~~~al~L~P~~ 545 (714)
||.+|-+|...+
T Consensus 137 DFe~AA~LGS~F 148 (175)
T KOG4555|consen 137 DFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHhCCHH
Confidence 999999998887
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=2.9e-08 Score=97.63 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|..+.+|+++|.++...|++++|+..|++++++.|+ ...+.++|.++..+|++++|+..|+++++++|++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 355677899999999999999999999999988775 35677899999999999999999999999999874
No 134
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=5.7e-07 Score=102.95 Aligned_cols=257 Identities=15% Similarity=0.044 Sum_probs=165.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC------
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC------ 459 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~------ 459 (714)
....++.+.|++++|++..++.-.. +....+-.+|.++.++|++++|...|...|..+|++..-|.......
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3456778889999999999875544 55556677899999999999999999999999999887776663321
Q ss_pred ---ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH---HHHHH
Q 005106 460 ---EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDY---QAALC 533 (714)
Q Consensus 460 ---~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~---e~Al~ 533 (714)
..+.-.+.|+...+..|....+ ..+...+..-..+.+.+..|=+-.--+--|..+.+.--+|...... ++-+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 1244456777777777764422 2333333333345544444433221121133333433344322221 12222
Q ss_pred HHHHHHhhCCCchhhh--------hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 534 DVQAILTLSPDYRMFE--------GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 534 d~~~al~L~P~~~~~~--------~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
.|...++-++...... ...-+...+ .|.|+..+.++ .|+..+++||+..|..++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l----------------Aqhyd~~g~~~--~Al~~Id~aI~htPt~~e 229 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL----------------AQHYDYLGDYE--KALEYIDKAIEHTPTLVE 229 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHH----------------HHHHHHhCCHH--HHHHHHHHHHhcCCCcHH
Confidence 2333332222111000 001122222 24444433333 259999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|..+|.+|-..|++++|.+.++.|..+++.|-..-....-.++..|++++|......
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888888888889999999999866543
No 135
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=4.7e-09 Score=85.94 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999864
No 136
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.88 E-value=1.9e-09 Score=113.12 Aligned_cols=186 Identities=12% Similarity=-0.027 Sum_probs=140.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cC
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC 459 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~ 459 (714)
.-..|+-|+.+|.|+|||.+|.++|...| +-.+.+++.+|+++..+..|..+.+.||.++...-.+|..||. ++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999954 3346789999999999999999999999999999999988864 45
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHH-----------------------------------HHHHHHhcCCHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMY-----------------------------------RASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~-----------------------------------rg~~l~~l~r~~eAl~~~~k 504 (714)
..+||..|++.+++|.|+.-+.-.. +|+.+...|.++-|+.++-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 5699999999999999997433222 33333333444444444444
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 505 AL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
-++-+-+...+-.-+..+.+..++++|+.+..+++-++|.++. +.|++-+....+.+.+....++.+
T Consensus 260 ~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 260 PRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred cccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 3332221111111145688899999999999999999999954 677888888888777777766666
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.88 E-value=1e-06 Score=84.03 Aligned_cols=220 Identities=23% Similarity=0.154 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHh--c--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVN--A--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~--~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~ 458 (714)
.......+..+...+.+..+...+..++. . .....+...|......|++..+++.+.+++...+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----------- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----------
Confidence 34556778888889999999999999875 2 33445556677777777766666666655554443
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRAS-SLMTKQNVEAALAEINRILGFKL---A-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~-~l~~l~r~~eAl~~~~kAL~l~P---~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
........+. ++...|++++|+..|.+++..+| . ...+..++..+...|++++|+.
T Consensus 128 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 128 -------------------PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred -------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 3333333333 45555555555555555554444 1 1222233334445555555555
Q ss_pred HHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHH
Q 005106 534 DVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 534 d~~~al~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
.+.+++...|+. .. .....+........++. +...+.+++...|.....+...+.
T Consensus 189 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 189 LLEKALKLNPDDDAE------ALLNLGLLYLKLGKYEE------------------ALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred HHHHHHhhCcccchH------HHHHhhHHHHHcccHHH------------------HHHHHHHHHhhCcccHHHHhhHHH
Confidence 555555555552 10 11111111111111111 244555555555555555566666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.+...|..++|...+++++..+|. +...|+.+... .+++...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~ 288 (291)
T COG0457 245 LLLELGRYEEALEALEKALELDPD----LYNLGLALLLL--LAEALELLE 288 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHh
Confidence 666666788888888888888887 66666666665 445444443
No 138
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.86 E-value=2.3e-08 Score=107.20 Aligned_cols=274 Identities=15% Similarity=0.070 Sum_probs=170.1
Q ss_pred HHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHH
Q 005106 366 VCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYE 436 (714)
Q Consensus 366 ~~LLe~Lv~~a~~~lq~~-~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~~~~a~~~lg~~~~~~G~~~~A~~ 436 (714)
+.+++.++....+.+... -.|.++|++|+-.++|++|.++..-=|.+ +.+-+-.++|+.+-..|.+++|+-
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 446666565555555443 34578999999999999999886543322 445566789999999999999976
Q ss_pred HHHHHHhc-------------CCCcHHHHHHHHhcC----------ChhHHHHHHHHHHhcCCCC-------------hH
Q 005106 437 KLNSVISS-------------VTPLGWMYQERSLYC----------EGDKRWEDLDKATALDPTL-------------SY 480 (714)
Q Consensus 437 ~~~~aI~~-------------~p~~~~ay~~rg~~~----------~~~eAl~d~~kAi~LdP~~-------------~~ 480 (714)
+..+-+.+ .-|+|.+|..+|+.. ..+++-.+|+.|++.--.+ -.
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 66555443 235566666655431 1255555666665443322 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGR 551 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~--~~~~~~~ 551 (714)
+|.|+|+.|.-+|+|++||..-+.=|++.-.+ .++.|.|.++.-+|+++.|++.|.+.+.|.-. +... .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H
Confidence 78899999999999999999888777765431 24556778999999999999999987665322 1110 0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
..-.+-++......+.+++|-.+-+.. | -+-|-|+---+...++..+|+++-.+|..+.|+-...+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rH-----------L-aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRH-----------L-AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 111222233333344444441110000 0 1223333345667788889999999999999888877776
Q ss_pred HhCC----C--ChhHHHHHHHHHHhcCC
Q 005106 632 QHAA----S--DHERLVYEGWILYDTSH 653 (714)
Q Consensus 632 ~l~P----~--~~ea~~~~G~~ly~~G~ 653 (714)
++.- . .--+..|+...-..+|.
T Consensus 343 ~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 343 RSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 6532 2 22355566655555554
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.9e-07 Score=93.05 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=155.2
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
.+.|+-...|-....+.+..|+.+-|...+++.-.--|+ +...-.-|..+..+|.|++|+..|+..++-||.+...+-|
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 577777888888899999999999999999996654485 6777778899999999999999999999999998654433
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.-+... .. . ....++.-++.=|+..|++.++|..++.++.-+|.++.|.=+|+..+
T Consensus 126 KlAilk-----a~-G------------------K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 126 KLAILK-----AQ-G------------------KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHH-----Hc-C------------------CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 222111 11 1 11224667788899999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CHHHHH---HHHHHhhc
Q 005106 632 QHAASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKR-SFEAFF---LKAYALAD 683 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G~---~eeAl~~ye~Ai~i~~-~~~a~~---~~~~~~~~ 683 (714)
=++|.++--+--+|.++|.+|- ++-|...|++|+++.| ++-++| +.|.+++-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5678899999999999 666654 78888883
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=4.7e-07 Score=103.65 Aligned_cols=234 Identities=13% Similarity=0.023 Sum_probs=138.8
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
....+.+.++...|++++|++.+.+....-.+....+..||.+ |+.++|...|..-|+.||++...|..+..++--
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3444556667777777777777766555555555555555432 444666666666666666666666666666522
Q ss_pred c-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 492 K-----QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA-ILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 492 l-----~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~-al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
. ...+.-++.|+..-+..|...+.......+..-.++...+..|-+ .+.- ++-.+-..+....
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-----------gvPslF~~lk~Ly 153 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-----------GVPSLFSNLKPLY 153 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-----------CCchHHHHHHHHH
Confidence 2 234444555555555555433221111111111223333332221 1111 0111122223333
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHH------------HhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQML------------ESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL------------~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.+.+++++..++... +...+ +..|... .+++.+|-.+..+|++++|+..+++||
T Consensus 154 ~d~~K~~~i~~l~~~------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 154 KDPEKAAIIESLVEE------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred cChhHHHHHHHHHHH------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444333232222 22222 2233444 355888999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.|...|.|...|-||-..|++++|....+.|-.+++..-
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999998764
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=5.3e-07 Score=99.39 Aligned_cols=131 Identities=20% Similarity=0.138 Sum_probs=84.4
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 414 ~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
-..+.++.+..++..|++++|...++..|...|++.|.+.-++.+ ++.++|++-+++|+.++|+....+.++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 344566677777777777777777777777777666666666542 4456666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
+..|++.+|+..+++.+.-+|+ +..|..++.+|..+|+-.+|...+-....++-+
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 6666666666666666666664 666666666666666666665544444444333
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=7.4e-08 Score=94.20 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~--~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+...+.+.++.++.. +..|++.|.++...|++++|+..|++|+.+.|+ +..+.+.|.++..+|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455555555677776 667799999999999999999999999998765 246788999999999999999999
Q ss_pred HHHHhhCCCchh
Q 005106 536 QAILTLSPDYRM 547 (714)
Q Consensus 536 ~~al~L~P~~~~ 547 (714)
+++++++|.+..
T Consensus 96 ~~Al~~~~~~~~ 107 (168)
T CHL00033 96 FQALERNPFLPQ 107 (168)
T ss_pred HHHHHhCcCcHH
Confidence 999999999843
No 143
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.2e-08 Score=104.79 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=90.4
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
...|+.+++.|++..|...|.+|+..-... ++.--...+... ++. ...|.|++.++..+++|.+|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~------~~~~~ee~~~~~----~~k-----~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYR------RSFDEEEQKKAE----ALK-----LACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhcc------ccCCHHHHHHHH----HHH-----HHHhhHHHHHHHhhhhHHHH
Confidence 346889999999999999999999863210 000000011111 111 24789999999999999999
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 499 LAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+...+++|+++|+ ..+++-||.++..+|+|+.|+.||++|++++|+|..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999995 899999999999999999999999999999999943
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=4.4e-08 Score=81.81 Aligned_cols=83 Identities=24% Similarity=0.281 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|. ...+...+.++...|++++|...++++++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 66777777888888888888889999999999999999999999998886 56777888899999999999999999998
Q ss_pred hCCC
Q 005106 541 LSPD 544 (714)
Q Consensus 541 L~P~ 544 (714)
++|+
T Consensus 97 ~~~~ 100 (100)
T cd00189 97 LDPN 100 (100)
T ss_pred cCCC
Confidence 8884
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=7.6e-07 Score=98.15 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
+.+.+-++..+...|++++|+..++..+...|+|.. ...+.+.+.-...+..+| ..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~------~~~~~~~i~~~~nk~~~A------------------~e 361 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY------YLELAGDILLEANKAKEA------------------IE 361 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCChHHH------------------HH
Confidence 444555555566666666666666666666665522 223333333333333333 45
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
-+++++.++|+.+.++.++|.+|.++|++.+|++.+++.+.-+|+|++.+.+++..+-.+|+..+|...+-+...+.-..
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 56666666666777888888888999999999999999998999888888888888888888888888888888776666
Q ss_pred H
Q 005106 672 E 672 (714)
Q Consensus 672 ~ 672 (714)
+
T Consensus 442 ~ 442 (484)
T COG4783 442 E 442 (484)
T ss_pred H
Confidence 6
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.76 E-value=6.7e-08 Score=102.82 Aligned_cols=206 Identities=16% Similarity=0.074 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c-c---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------c
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G-H---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------L 448 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~----~-~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~ 448 (714)
...|..-|..+-..|++++|...|.+|.+. + + ..++...+.++ ..+++.+|+..|++|+.++.. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445566799999999999999999999766 1 1 22344445555 555999999999999998432 2
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----H
Q 005106 449 GWMYQERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----L 512 (714)
Q Consensus 449 ~~ay~~rg~~-----~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~ 512 (714)
+..+.+.|.+ +++++|++.|.+|+++--.. ...+.+.|.++.++|+|++|+..|++++....+ +
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 4455555532 35599999999999983322 356778999999999999999999999975321 2
Q ss_pred --HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-
Q 005106 513 --ECLE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG- 588 (714)
Q Consensus 513 --~~~~-~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~- 588 (714)
..++ ..+.+++.+||+..|...+++....+|.+....-...+..+....+ . .+.+.+.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-----------------~-~D~e~f~~ 255 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-----------------E-GDVEAFTE 255 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-----------------T-T-CCCHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-----------------h-CCHHHHHH
Confidence 1233 3456899999999999999999999999854322222222222111 1 1112222
Q ss_pred hHHHHHHHHHhCCCChhHH
Q 005106 589 SLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~ 607 (714)
++..|++.-.+|||....+
T Consensus 256 av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 256 AVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HCHHHTTSS---HHHHHHH
T ss_pred HHHHHcccCccHHHHHHHH
Confidence 4667777788887766544
No 147
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.76 E-value=6.2e-06 Score=89.04 Aligned_cols=261 Identities=17% Similarity=0.128 Sum_probs=176.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHhcCChhHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcC
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQ 493 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~-------~ay~~rg~~~~~~eAl~d~~kAi~LdP~~-~~ay~~rg~~l~~l~ 493 (714)
|......|++.+|.+...++-+-.+.-. .|-++||++ +.|=..+.+|.++.|+. ...+..|+-++...|
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~---~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE---DRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH---HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4456677999999999988777655433 333445444 88888999999995544 357888999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC-chhhhhhHHHHHHHHHHHHhhhhh
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS---PD-YRMFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~---P~-~~~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
+++.|......+++..|. +........+|...|+|.+..+-..+.-+-. +. +..+.. .+ ..+.++.....-
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a---~~glL~q~~~~~ 243 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QA---WEGLLQQARDDN 243 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HH---HHHHHHHHhccc
Confidence 999999999999999996 7877778889999999999998877766633 22 111111 11 111111111111
Q ss_pred hHH---HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 569 TIA---DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 569 ~~A---~~~~~l~~~~~~--------------~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
... ++|.++-.+... .++.. |...+.++|...= ++.++-. .--.+.++++.=+...++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~L~~~--~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPRLCRL--IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-ChhHHHH--HhhcCCCCchHHHHHHHHH
Confidence 111 123222222221 12222 4445555554421 1222111 1123356666667777788
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhh
Q 005106 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (714)
Q Consensus 631 l~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~ 693 (714)
+...|+++..+.++|-.+++.+.+.+|=..+|.|++.+||-+.|...|++++-.. ||+-+.-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g-~~~~A~~ 382 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG-EPEEAEQ 382 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC-ChHHHHH
Confidence 8889999999999999999999999999999999999999999999999987554 4444443
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=7.5e-07 Score=90.97 Aligned_cols=210 Identities=15% Similarity=0.076 Sum_probs=143.9
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHhhhhH-H--HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH
Q 005106 351 LSEVAMNLDPRSDKTVCFLERLLESAETD-R--QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI 427 (714)
Q Consensus 351 l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~-l--q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~ 427 (714)
-.|-.. ...+++..+++.++...-.... + .....+.+.-.+.+.+|+.+-|..++++.-..-|. ++. .++ .
T Consensus 18 ~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~R-V~~---l 91 (289)
T KOG3060|consen 18 RKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKR-VGK---L 91 (289)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-Chh-HHH---H
Confidence 356333 3346777777776633211111 0 11234456677777888888888888774332221 111 111 1
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
.| .-+...|.+ ++|++.|+..++-||++.-+|...-.++..+|+.-+||..++.-+.
T Consensus 92 ka--------------------m~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 92 KA--------------------MLLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HH--------------------HHHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 112223334 8888888999999999999999999999999999999999999998
Q ss_pred cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 508 FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 508 l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
.=| +.++|...+.+|..+|+|++|.-+|+..+-++|-++++++|.+ ..+-.+. +++.+.|
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~a-------------- 210 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELA-------------- 210 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHH--------------
Confidence 777 5999999999999999999999999999999999988877654 2222221 2333333
Q ss_pred ccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 586 DIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 586 d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
...|.|+|.++|.+.+++|..-
T Consensus 211 ----rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 ----RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred ----HHHHHHHHHhChHhHHHHHHHH
Confidence 6689999999998888876543
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=5.7e-07 Score=102.72 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHh--c--C
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL--Y--C 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~rg~--~--~ 459 (714)
.+.+.-.+|...|+..+|.....+-|+ +++++ +.|..+||...--..|++|.++.. .++.|....|. + .
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~-----~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP-----RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc-----hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 344566678888888899888888788 44433 446777888877888888888743 34443333221 1 2
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+.++..+|+.+++++|-....|+++|.+..++++++.|..+|.+.+.++|+ ..+|+|...+|..+|+..+|-+.+..|
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
++-+=++. ....+-+++...+..|++|
T Consensus 580 lKcn~~~w------~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 580 LKCNYQHW------QIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhcCCCCC------eeeechhhhhhhcccHHHH
Confidence 99984441 1233334455566667777
No 150
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=8.7e-08 Score=94.49 Aligned_cols=101 Identities=25% Similarity=0.305 Sum_probs=82.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
-|+-++..|++.+|...|..||++-|.... -.| .-.|.|||.+++.+++.+.||.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHH
Confidence 355677778888887777777777765544 222 1258899999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 501 EINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 501 ~~~kAL~l~P~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+..|||+++|.+ .++..|+.+|..+..|++|+.||.++++++|...
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999974 5566679999999999999999999999999873
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.3e-06 Score=97.79 Aligned_cols=212 Identities=17% Similarity=0.086 Sum_probs=140.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCCHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPT----LSYPYMYRASSLMTKQNVEA 497 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~LdP~----~~~ay~~rg~~l~~l~r~~e 497 (714)
...|++++|....++.+..+|+...++.-.= +..++++|+ +.|+.++. +... +.+|.+..++|+.++
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGALLVINSFF-FEKAYCEYRLNKLDE 97 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcchhhhcchhh-HHHHHHHHHcccHHH
Confidence 3445555555555555555555554443221 111224444 33333332 2211 578889999999999
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHh
Q 005106 498 ALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (714)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~ 576 (714)
|+.+++ .+++. ....+.++.++.++|+|++|+.-|+..++=+-+......+.........
T Consensus 98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------------- 158 (652)
T KOG2376|consen 98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------------- 158 (652)
T ss_pred HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----------------
Confidence 999999 55775 4578999999999999999999999998877665332222221111100
Q ss_pred hhhccccccccchHH-HHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCC--------hh
Q 005106 577 LYDRWSSVDDIGSLS-VIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASD--------HE 639 (714)
Q Consensus 577 l~~~~~~~~d~~al~-~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~--------~e 639 (714)
+. ...+..-.-|. +-+.+||.+-++...|.+.+|++.+++|+++ .-.+ .-
T Consensus 159 -------------l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 159 -------------LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred -------------hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 00 01222233333 4568999999999999999999999999432 1111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 640 a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
....++.+|..+|+-+||.+.|..-|+.+|-.+.+
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 56788999999999999999999999998877643
No 152
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=3.1e-08 Score=109.21 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLALEDYQAALCDVQAILTL-SPDY 545 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~lgd~e~Al~d~~~al~L-~P~~ 545 (714)
+-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+ +|+|+|.+|..+|++++|+.++++|+++ +|.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 368999999999999999999999999999999999997 43 4899999999999999999999999998 5544
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.72 E-value=5.7e-08 Score=79.45 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+.+|.++++.|++++|+..|+++++.+|+ +++++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46788899999999999999999999996 7888889999999999999999999999999986
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=1.7e-07 Score=78.12 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..++++++..|.+..+++.+|.++...|++++|+..++++++..|.+.+++...|.++...|++++|...+++++.+.
T Consensus 19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 005106 669 RS 670 (714)
Q Consensus 669 ~~ 670 (714)
|+
T Consensus 99 ~~ 100 (100)
T cd00189 99 PN 100 (100)
T ss_pred CC
Confidence 74
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.67 E-value=2.9e-06 Score=88.46 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=121.3
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
+..++..|.-....|++++|++.|++++..+|..+.+.. +...+|.++.++++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~---------------------------a~l~la~ayy~~~~ 84 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ---------------------------VQLDLIYAYYKNAD 84 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH---------------------------HHHHHHHHHHhcCC
Confidence 333444555566666666666666555555554332221 23788999999999
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 495 VEAALAEINRILGFKLA----LECLELRFCFFLALED------------------YQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd------------------~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
+++|+..|++.|++.|+ +.+++.+|.++..+++ ..+|+..|++.++.-|+...+ .
T Consensus 85 y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---~ 161 (243)
T PRK10866 85 LPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---T 161 (243)
T ss_pred HHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH---H
Confidence 99999999999999885 4556778877655541 357889999999999986321 1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
.+......++..+.. --+..|..+.+.|.+..|+.-++..++
T Consensus 162 ~A~~rl~~l~~~la~--------------------------------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 162 DATKRLVFLKDRLAK--------------------------------------YELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 111211111111111 123456677888999999999999999
Q ss_pred hCCC---ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 633 HAAS---DHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 633 l~P~---~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.-|+ ..+|++.++.++..+|.-++|-+..
T Consensus 204 ~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 204 DYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8886 5688999999999999999987543
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.3e-06 Score=87.36 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=112.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
+|..|-..|=..-|.-+|++++.++|+.+.++.-.|.| +.++.|++.|+..++|||++-.+..|||.++.--||+.
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 34444444444444455555555555555555555443 34466777788899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV-QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~-~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
-|..+|.+--+-||+ |.- ...-.+-...-|..+|.... +++-.++-++ .|-...-..++.+..
T Consensus 151 LAq~d~~~fYQ~D~~DPfR-~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~---WG~~iV~~yLgkiS~----------- 215 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFR-SLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQ---WGWNIVEFYLGKISE----------- 215 (297)
T ss_pred hhHHHHHHHHhcCCCChHH-HHHHHHHHhhCCHHHHHHHHHHHHHhccHhh---hhHHHHHHHHhhccH-----------
Confidence 999999999998985 431 11112222333555555443 3444444332 111111111111100
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAP-------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~-------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
-+.+.++.+-.-+ -.++||.+|.-...+|...+|...|..|+..+--
T Consensus 216 ---------------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 216 ---------------ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ---------------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 0122222222222 2467999999999999999999999999987643
No 157
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=92.71 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-L-----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-----~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
...=|+-+..-|.|++|...|..||++-|. + -+|.|||.++.+++.++.||.++.+||+|+|.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----------
Confidence 345688888899999999999999999885 2 356789999999999999999999999999997
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
++||+ +|+.++.++-.+++|+.+|.+.++++|
T Consensus 168 --------------------------------------~kAl~----------RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 168 --------------------------------------EKALE----------RRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred --------------------------------------HHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 23333 577888888888888888888888888
Q ss_pred CChhHH
Q 005106 636 SDHERL 641 (714)
Q Consensus 636 ~~~ea~ 641 (714)
...+|.
T Consensus 200 s~~ear 205 (271)
T KOG4234|consen 200 SRREAR 205 (271)
T ss_pred chHHHH
Confidence 887664
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.64 E-value=2.2e-06 Score=91.28 Aligned_cols=211 Identities=18% Similarity=0.125 Sum_probs=142.0
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP 476 (714)
.+|++|...|++| |+.+...|++++|.+.|.++...+-..+.- ..|-
T Consensus 29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~----------~~Aa----------- 75 (282)
T PF14938_consen 29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK----------FEAA----------- 75 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H----------HHHH-----------
T ss_pred CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH----------HHHH-----------
Confidence 3788888888886 455778888888888888777665221111 2222
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhh
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA--LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~--~~~~~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~ 548 (714)
.+|.+-|.++.+. ++++|+..|++|+.+ +|. ..++...|.+|... |++++|+..|++|+++--....
T Consensus 76 ---~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~- 150 (282)
T PF14938_consen 76 ---KAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS- 150 (282)
T ss_dssp ---HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred ---HHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence 3444555566555 888888888888876 122 23445567888888 9999999999999986221100
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (714)
...+ ...+.+.|.++.++|++++|+..|+
T Consensus 151 -------------------~~~a--------------------------------~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 151 -------------------PHSA--------------------------------AECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp -------------------HHHH--------------------------------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------------hhhH--------------------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0000 1234567788999999999999999
Q ss_pred HHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHhhccCCCCCchhhHHH
Q 005106 629 LARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVS 696 (714)
Q Consensus 629 ~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~ 696 (714)
+.....-++ .+.+..-+.|.+.+|+.-.|...+++...++|+| |.-|+.+..-|=.+-|++.-+.+|.
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998754322 2445678899999999999999999999999866 4667777776666667776665543
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.9e-07 Score=97.96 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
+.-....|+.+++.|+|..|...|++|+.. ++.... +.++.-..-.--+..+-|++..|.....|
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~~~k~~~~lNlA~c~lKl~~~--- 273 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAEALKLACHLNLAACYLKLKEY--- 273 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHHHHHHHHhhHHHHHHHhhhhH---
Confidence 444567899999999999999999999876 322110 01111111111233466788888888666
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHhcCCHHHH-HHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAA-LCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~-~R~~~~~~lgd~e~A-l~d~~~al 539 (714)
.+|+...+++++++|+|.-|.+.||.++..+|.|+.|+.+|+||++++|+..+.. -...+..+..++++. -.-|.+.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999744333 344444444445444 45566666
Q ss_pred hhCCC
Q 005106 540 TLSPD 544 (714)
Q Consensus 540 ~L~P~ 544 (714)
..-+.
T Consensus 354 ~k~~~ 358 (397)
T KOG0543|consen 354 AKLAE 358 (397)
T ss_pred hcccc
Confidence 55443
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=1.1e-06 Score=84.11 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
++++|+..|+++++-.|+. ..+..++|.+++.+|++++|+..++.+- -.+ .+..+..+|.++..+|++++|+..|
T Consensus 63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 63 DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3366666666666666554 3577889999999999999999997733 222 3566778999999999999999999
Q ss_pred HHHH
Q 005106 536 QAIL 539 (714)
Q Consensus 536 ~~al 539 (714)
++|+
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 9985
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.57 E-value=1.3e-07 Score=81.74 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
|+..++++++.+|. +...++++|.++.++|++++|+..+++ ..++|.+.+.++..|.+++.+|+++||+..+++|
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 48899999999995 577899999999999999999999999 9999999999999999999999999999999986
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=1.2e-06 Score=92.23 Aligned_cols=107 Identities=8% Similarity=-0.028 Sum_probs=79.7
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 479 ~~ay~~rg~~l-~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
...+++.|..+ +..|+|++|+..|++.|+..|+ +.+++.+|.+|...|++++|+..|+++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-------- 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-------- 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45566666655 5567888888888888888885 3566777888888888888888888888888875
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
|..+++++.+|.++..+|+.++|...|++.++.
T Consensus 214 -----------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 -----------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566777777777788888888888888888
Q ss_pred CCCChhH
Q 005106 634 AASDHER 640 (714)
Q Consensus 634 ~P~~~ea 640 (714)
.|++..+
T Consensus 247 yP~s~~a 253 (263)
T PRK10803 247 YPGTDGA 253 (263)
T ss_pred CcCCHHH
Confidence 8777654
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.53 E-value=2e-07 Score=80.53 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~--~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
+.+++|+..|+++++.+|+ +...++++|.++.++|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3459999999999999996 466788899999999999999999999 888886 577788899999999999999999
Q ss_pred HHH
Q 005106 536 QAI 538 (714)
Q Consensus 536 ~~a 538 (714)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=1.1e-06 Score=81.52 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
.+++.+++++..+|+.++|+..|+++++..++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 4567788888888888888888888888765531
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.-..+++.+|.++..+|++++|+..++++++-.|+ +......++.+|+..|+.+||++.+-+++.
T Consensus 36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01234566777888888888888888888887777 777777788888888888888887777765
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.52 E-value=7.2e-06 Score=85.53 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~ 454 (714)
....+..|......|+|++|+..|++.+...| ..+...+|.++++.|++++|+..+++.|+.+|+ .+.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 45577889999999999999999999998844 224567899999999999999999999999875 5778888
Q ss_pred HHhcC-------------------C---hhHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHhcCCH
Q 005106 455 RSLYC-------------------E---GDKRWEDLDKATALDPTLSY-----------------PYMYRASSLMTKQNV 495 (714)
Q Consensus 455 rg~~~-------------------~---~~eAl~d~~kAi~LdP~~~~-----------------ay~~rg~~l~~l~r~ 495 (714)
+|... + ..+|+..|++.|+.-|+... --+..|.-|.+.|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 87531 0 14678889999999998742 223445556666666
Q ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 496 EAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
..|+.-++.+|+--|+ .++++.....|..+|..++|...
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6677777777666663 34445555666666666666543
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.50 E-value=1.7e-05 Score=80.26 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeA 657 (714)
+..|..+.+.|.+.+|+.-++.+++.-|+.. +|+..++..++.+|..+.|
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3467778888999999999999999999854 6788888999999988844
No 167
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.2e-06 Score=90.04 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++-+.-++.-+.-||+++.-|.-+|-+|+.+|+++.|...|.+|+++.|+ ++.+-..+.++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-------------- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-------------- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence 56667778888888888888888888888888888888888888888774 665544333221110
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++.. ...+-..++++|.+||.++.+.+.+|..+...|++
T Consensus 205 -~~~~----------------------------------------ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 205 -GQQM----------------------------------------TAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred -CCcc----------------------------------------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 1111 11123356777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCChhH
Q 005106 621 EAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea 640 (714)
++|....+.-+.+.|.+...
T Consensus 244 ~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 244 AEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHhcCCCCCch
Confidence 77777777777777766543
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.47 E-value=5.6e-07 Score=75.06 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=60.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
..++.+.+++++|+..+++++.++|+++..+..+|.+++.+|++++|+..+++++++.|+.. +-.+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999877 555554
No 169
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=4e-06 Score=80.14 Aligned_cols=119 Identities=16% Similarity=0.078 Sum_probs=92.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 491 TKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~~----~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
..++...+...+++.+.-.|+. .+...++.++...|++++|+..|++++.-.|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5778888888888888888852 22344677888889999999999998887766411
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
.+.+++++|.++..+|++++|+..++. +.-.+-.+.++..+|.
T Consensus 84 ------------------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 84 ------------------------------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 123566788888899999999999866 4555667788888999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005106 647 ILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 647 ~ly~~G~~eeAl~~ye~Ai 665 (714)
++...|++++|.+.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999885
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.47 E-value=1.4e-05 Score=81.02 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQ 453 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~ 453 (714)
...+++..|...++.|+|.+|+..|++.+..-| ..+...+|.+++..|++..|+..+++.|..+|+ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 356788999999999999999999999988732 446778999999999999999999999999886 456777
Q ss_pred HHHhcC---------------ChhHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 005106 454 ERSLYC---------------EGDKRWEDLDKATALDPTLSYP-----------------YMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 454 ~rg~~~---------------~~~eAl~d~~kAi~LdP~~~~a-----------------y~~rg~~l~~l~r~~eAl~~ 501 (714)
.+|... ...+|+..|++.|+.-|+...+ -+..|..|.+.|++..|+.-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776421 0146778888888888887533 23456667777777777777
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHhcCCHH
Q 005106 502 INRILGFKLAL----ECLELRFCFFLALEDYQ 529 (714)
Q Consensus 502 ~~kAL~l~P~~----~~~~~R~~~~~~lgd~e 529 (714)
++.+|+--|+. +++......|..+|..+
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 77777766652 33344555666777666
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.44 E-value=2.9e-06 Score=89.39 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=92.2
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 511 ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 511 ~~~~~~~R~~~-~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
+...++..+.. ....|+|++|+..|++.++..|+..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------------------------------------- 177 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------------------------------------- 177 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------------------------------------------
Confidence 34555666654 3667999999999999999999862
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
-.+.+++.+|.++...|++++|+..|++++...|+ .+++++.+|.++..+|++++|...|++.++
T Consensus 178 ------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 178 ------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11356788999999999999999999999999887 699999999999999999999999999999
Q ss_pred cCCCHH
Q 005106 667 MKRSFE 672 (714)
Q Consensus 667 i~~~~~ 672 (714)
.-|+.+
T Consensus 246 ~yP~s~ 251 (263)
T PRK10803 246 KYPGTD 251 (263)
T ss_pred HCcCCH
Confidence 999987
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=7.1e-07 Score=74.47 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
++|+..++++++++|+++.+|..+|.++..+|++++|+.+|+++++..|+
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 55555555555555555555555555555555555555555555555554
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.43 E-value=5e-06 Score=77.26 Aligned_cols=99 Identities=22% Similarity=0.123 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
+.+.+++|.++..+|+.++|+..|++|++..++ ..++..+|..+..+|++++|+.-+++++.-.|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~--------- 71 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD--------- 71 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence 357889999999999999999999999997654 3456678889999999999999999998887874
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+..+....+.+|..+|+++||++.+-.++.
T Consensus 72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333445577889999999999999888775
No 174
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=4.5e-07 Score=88.69 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC---
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--- 527 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd--- 527 (714)
+.|.+.++.+...||.+++++++.|.+|.++.+ +++|+.-|+.||.++|+ .+++++.|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 566777777777777777777777777777633 35667777777777776 5666677766554443
Q ss_pred --------HHHHHHHHHHHHhhCCCchh
Q 005106 528 --------YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 528 --------~e~Al~d~~~al~L~P~~~~ 547 (714)
|++|...|++|...+|++..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 78888899999999999854
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=6.9e-07 Score=73.45 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
|...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999976 555554
No 176
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.40 E-value=9.1e-07 Score=86.56 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC------
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH------ 653 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~------ 653 (714)
...++.....+|.+++.++|-|.+|+.| ..+++|+.-|+.||.++|+.++|++++|.++..+|.
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~ 90 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA 90 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence 5567888999999999999999999986 445789999999999999999999999999998865
Q ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 654 -----CEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 654 -----~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
|++|...|++|..++|+++.|. |+.-+++
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~ 124 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 9999999999999999999875 4444443
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3e-06 Score=89.00 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRIL 506 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL 506 (714)
-+...+..+..+|+++.-|..+|.+ ++...|...|.+|++|.|+++..+...|.+++... .-.+|...|++||
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3444455555666655544444432 34466666667777777777777777666666543 2446666677777
Q ss_pred hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 507 GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 507 ~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++||+ ..+.+.++..+.+.|||.+|+..+++.+.+.|.+.
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77774 66666666666777777777777777777666653
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00042 Score=73.98 Aligned_cols=279 Identities=12% Similarity=0.056 Sum_probs=178.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------------c------
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------------S------ 444 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~--------------~------ 444 (714)
-.+|.+++..|+|++|...|+.+.+.+ +...+.+++.+++-+|.+.+|-....++-. +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 356778899999999999999988774 444577889999999999999666543321 1
Q ss_pred -------------CCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 445 -------------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 445 -------------~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.-.++.+++.|..| ++||..|.+.+.-+|+....-.++|.+|..+.-|+-+-..+.--|..-|+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 12467777888777 99999999999999999999999999999999998777777666666665
Q ss_pred -HHHHHHHHH------------------------------------------------------------------HHHh
Q 005106 512 -LECLELRFC------------------------------------------------------------------FFLA 524 (714)
Q Consensus 512 -~~~~~~R~~------------------------------------------------------------------~~~~ 524 (714)
+.+.+..+. -|+.
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 322222221 1667
Q ss_pred cCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cc----------------
Q 005106 525 LEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DD---------------- 586 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-~d---------------- 586 (714)
++|..+|+.... .++|.-+. |..++-.....|.--.-.+....|+-..++--.-... |.
T Consensus 298 q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 298 QNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred cccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 777777766543 56776532 3333322222221111222223333222221111110 11
Q ss_pred cc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH---HHHHHHHhcCCHHHHHHHHH
Q 005106 587 IG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV---YEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 587 ~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~---~~G~~ly~~G~~eeAl~~ye 662 (714)
++ -+..++-.-+-.-++.+..+|.+-+...-|.+.||.+.+-+.-.-+ --+-+. .++-|+...|+-+-||..+
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~- 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE--IKNKILYKSMLARCYIRNKKPQLAWDMM- 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh--hhhhHHHHHHHHHHHHhcCCchHHHHHH-
Confidence 11 1333343444567888889999999999999999999876654333 222333 3556788889999998776
Q ss_pred HHHhcCCCHHHHHH
Q 005106 663 ESIQMKRSFEAFFL 676 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~ 676 (714)
+..+-+-++|-|
T Consensus 452 --lk~~t~~e~fsL 463 (557)
T KOG3785|consen 452 --LKTNTPSERFSL 463 (557)
T ss_pred --HhcCCchhHHHH
Confidence 344555555543
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00068 Score=76.63 Aligned_cols=284 Identities=11% Similarity=-0.002 Sum_probs=178.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~ 466 (714)
+..+.+..+.++.++|+..++ -++..+.......|.+.+++|+|++|+.-|...++-+.+.-..-...+.. ....+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVAAALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhhh
Confidence 567778889999999999998 33444455667788999999999999999998888776554444333222 0111221
Q ss_pred -HHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCHH--------HHHHHHHHHHhcCCH
Q 005106 467 -DLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLALE--------CLELRFCFFLALEDY 528 (714)
Q Consensus 467 -d~~kAi~LdP~-~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~~~--------~~~~R~~~~~~lgd~ 528 (714)
+..+.+-..|+ ..+-++|+|.++...|+|.+|+..+.+|+.+ +-+-+ +..-.++++..+|+-
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 25667777777 6688999999999999999999999999432 11111 122356899999999
Q ss_pred HHHHHHHHHHHhhCCCchhh----hhhHHHHHH-------HHHHHHhhhhhhHHHHHHhhhhcccc--ccccc-------
Q 005106 529 QAALCDVQAILTLSPDYRMF----EGRVAASQL-------HMLVREHIDNWTIADCWLQLYDRWSS--VDDIG------- 588 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~----~~~~~a~~~-------~~~l~~~~~~~~~A~~~~~l~~~~~~--~~d~~------- 588 (714)
++|..-|...+..+|-+..+ .++..+..- -.+..........++.|.+-...-+. .-+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999977531 111110000 00000011111111112111111000 00000
Q ss_pred -hHHHHHHHHHhCCC-ChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 589 -SLSVIYQMLESDAP-KGVLYF---RQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 589 -al~~~~qaL~l~P~-~~~~~~---~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.-...++-...-|. .+...+ .+...+.+-..+..|...+..-.+-.|.+ .....-+..+...+|+++.|+..++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 01122333333333 333322 23444444557888999999999999987 7788889999999999999999999
Q ss_pred --------HHHhcCCCHH
Q 005106 663 --------ESIQMKRSFE 672 (714)
Q Consensus 663 --------~Ai~i~~~~~ 672 (714)
...+++.+.+
T Consensus 401 ~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHhhhhhhhhhhhccChh
Confidence 5555555544
No 180
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.31 E-value=1.1e-05 Score=86.20 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=124.7
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHH--HHhc
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQE--RSLY 458 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~--rg~~ 458 (714)
....|.++...|++++|++.+.+. +......-.-.++...|+++.|.+.+.++-+.+.+ ++.+|.+ .|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~- 180 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG- 180 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence 345678888899999998877664 34444454556899999999999999888777664 4555555 443
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY-QAALCDVQ 536 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~-e~Al~d~~ 536 (714)
..+.+|.-.|+...+..|..+..++..|.+.+.+|+++||...+..|++.+|+ ++.+.|+..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34599999999988888899999999999999999999999999999999997 89899999999999988 66778888
Q ss_pred HHHhhCCCchh
Q 005106 537 AILTLSPDYRM 547 (714)
Q Consensus 537 ~al~L~P~~~~ 547 (714)
+.-..+|+++.
T Consensus 261 qL~~~~p~h~~ 271 (290)
T PF04733_consen 261 QLKQSNPNHPL 271 (290)
T ss_dssp HCHHHTTTSHH
T ss_pred HHHHhCCCChH
Confidence 88889999853
No 181
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=3.4e-07 Score=96.93 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.+.|++.|++||+++|..+..|.+||.++..+++...||.+++.||+++|+ ..-|-.|+.+...+|+|++|-.|++.|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 388899999999999999999999999999999999999999999999997 5556679999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
+++=+-.....-.......+.++.+...++.+.
T Consensus 210 kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 210 KLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred hccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 988664322222223344444555555555553
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.28 E-value=1.1e-06 Score=97.05 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.++.|+..|.|||+++|+.+..|-+|+.++...+.+..|+.|+++||+++|. ..+|+.||.++..++.+.+|+.+|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 4478888888888888888888888888888888888888888888888886 566677788888888888888888888
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
..+.|+..
T Consensus 99 ~~l~Pnd~ 106 (476)
T KOG0376|consen 99 KKLAPNDP 106 (476)
T ss_pred hhcCcCcH
Confidence 88888874
No 183
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.26 E-value=1e-06 Score=101.04 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeC----------CCCCCHHHHHHHHHhhccCC
Q 005106 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGS 246 (714)
Q Consensus 177 ~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~----------~~~i~~~~~~~lL~f~Ytg~ 246 (714)
+...+.||||.||++.|++||.||+++|++|+.+|.....-+....|.+. -++|.|..|+.+|+|+||++
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 34557899999999999999999999999999999876544433333332 22699999999999999996
Q ss_pred C
Q 005106 247 L 247 (714)
Q Consensus 247 l 247 (714)
+
T Consensus 634 ~ 634 (1267)
T KOG0783|consen 634 L 634 (1267)
T ss_pred c
Confidence 4
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.26 E-value=8.8e-07 Score=75.06 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|.-+.+++++|.++..+|++++|+..|++|+++. |.-+.+++++|++++.+|++++|+..+++|++|-
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446789999999999999999999999999763 2346789999999999999999999999999873
No 185
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.25 E-value=1.1e-05 Score=74.99 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=80.2
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|+..|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+- ..+++.+|.++-.+|+-|.|-.+|+.
T Consensus 61 ~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 61 GALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEA 140 (175)
T ss_pred HHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHH
Confidence 37999999999999999999999999999999999999999999998764 56899999999999999999999999
Q ss_pred HHhcCCCHH
Q 005106 664 SIQMKRSFE 672 (714)
Q Consensus 664 Ai~i~~~~~ 672 (714)
|-.+-.+|+
T Consensus 141 AA~LGS~FA 149 (175)
T KOG4555|consen 141 AAQLGSKFA 149 (175)
T ss_pred HHHhCCHHH
Confidence 999988886
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00011 Score=75.91 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC----ChhHHHHHHHH-
Q 005106 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC----EGDKRWEDLDK- 470 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~----~~~eAl~d~~k- 470 (714)
|.|..++..-.+.-.. +...-..++.|.|..+|.+..-+......- -|+ -.+......|. ..++-++....
T Consensus 22 Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~-lqAvr~~a~~~~~e~~~~~~~~~l~E~ 98 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATP-LQAVRLLAEYLELESNKKSILASLYEL 98 (299)
T ss_pred hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CCh-HHHHHHHHHHhhCcchhHHHHHHHHHH
Confidence 4455555444332222 223345677888888888765544322111 111 11111112221 11222322221
Q ss_pred -HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 471 -ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 471 -Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
|-+-+-++.-...-=|.+++.-|++++|+....+.. +.++.-.--.++.++.+.+-|....++..++|-+..
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--- 171 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--- 171 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---
Confidence 333444455566677889999999999998877733 334444445688999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
..++ |.+|+.+...-..+.|. .=+|+..-+..|..+.+.+.++.+...+||++||...++.
T Consensus 172 ----LtQL-------------A~awv~la~ggek~qdA--fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 172 ----LTQL-------------AQAWVKLATGGEKIQDA--FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred ----HHHH-------------HHHHHHHhccchhhhhH--HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 2333 77899888876665544 7788888888999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 630 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|+.-+|++++.+.|+=.+-..+|.-.++...+---+..
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999998887666654
No 187
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.23 E-value=5.8e-05 Score=80.62 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=143.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchh----hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIY----SIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQER 455 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~----a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~r 455 (714)
.+-|.-..+..+++.|+..+.+.|+. +... .+-.+..+....|.+.+++..--..|..-.+ .-.+|.+.
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888887765 2211 1222445777788887776654444433211 12333333
Q ss_pred HhcCChhHHHHHHHHHHh-------cCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 005106 456 SLYCEGDKRWEDLDKATA-------LDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLE 516 (714)
Q Consensus 456 g~~~~~~eAl~d~~kAi~-------LdP~~-----~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~ 516 (714)
.+- .+.+.+|+|++. +--+. .++...+|.+...++.++.+++.|++|+.+..+ .....
T Consensus 90 ar~---~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 90 ARS---NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHH---HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 222 444445555443 22222 245555677777777777777777777766332 12234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.+|-++..+.|+++|+-.-.+|.+|--++. + +|. =..|+.+
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------------------l-------------------~d~--~~kyr~~ 207 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYG------------------L-------------------KDW--SLKYRAM 207 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------------------c-------------------Cch--hHHHHHH
Confidence 455566666666666666666555544431 0 111 1122222
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
..+.++.+|-++|+...|++..+.|.++.-..+ .-+...|-|+-..|+.|.||+.||+|+.+.++
T Consensus 208 ---------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 208 ---------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred ---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 246788899999999999999999988865443 44567889999999999999999999998765
Q ss_pred H
Q 005106 671 F 671 (714)
Q Consensus 671 ~ 671 (714)
-
T Consensus 279 ~ 279 (518)
T KOG1941|consen 279 L 279 (518)
T ss_pred h
Confidence 4
No 188
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0003 Score=73.63 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=193.1
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~--~lg~~~~~~G~~~~A~~~~ 438 (714)
|....++++..-.+-.+ +..-++..+|.+|....+|.+|..+|++.-.+-|.++-+ +-+..+++.|.+..|++-.
T Consensus 25 ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45555555544333222 123456789999999999999999999977666665543 4567788888888887754
Q ss_pred HHHHhcCCCcHHHHHHHHhcCChhHHHH-------HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 439 NSVISSVTPLGWMYQERSLYCEGDKRWE-------DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~~~~~eAl~-------d~~kAi~LdP--~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~ 509 (714)
. .+..++++ .++. .+.+.||. --.-.++--| +.+...+|.|-++.+.|+|++|+.-|+.|+++.
T Consensus 102 ~-~~~D~~~L----~~~~--lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 102 F-LLLDNPAL----HSRV--LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred H-HhcCCHHH----HHHH--HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 3 22223322 2221 01122221 1234455566 678899999999999999999999999999987
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCch--h--------hhhh---------HHHHHHHHHHHHhh
Q 005106 510 L-ALECLELRFCFFLALEDYQAALCDVQAILTLS----PDYR--M--------FEGR---------VAASQLHMLVREHI 565 (714)
Q Consensus 510 P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~----P~~~--~--------~~~~---------~~a~~~~~~l~~~~ 565 (714)
. ++-..++.+.++...|+++.|+.....+++.. |..- | +.|+ ..+.++...+.-..
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 6 57778999999999999999999988877743 4321 0 1111 11444444444444
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~-----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
++++.|. +.-+.+-|+ +|....|++.. ..-+++.+..+-++-.++++|--.+.
T Consensus 255 ~n~eAA~---------------------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 255 RNYEAAQ---------------------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ccHHHHH---------------------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHH
Confidence 4444442 111222222 34556666543 33467888899999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
.-|+=+++.+..-|+-|-.. ++-+|+-.=+||- .|...||+--.-||.
T Consensus 313 FANlLllyCKNeyf~lAADv----LAEn~~lTyk~L~--------------~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADV----LAENAHLTYKFLT--------------PYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHH----HhhCcchhHHHhh--------------HHHHHHHHHHHhCCC
Confidence 88888888888777777643 4557776666653 344556665555554
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00034 Score=74.62 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=145.1
Q ss_pred hccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHhcCChhHH
Q 005106 395 LRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-------GWMYQERSLYCEGDKR 464 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-------~~ay~~rg~~~~~~eA 464 (714)
...+|..|+...+-++..+. .+...++|.+++.+|++++|.+.|.-+....... +..++-+|.| .+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HHH
Confidence 45688889988888776632 2345678999999999999999999777754443 4444444555 666
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 465 l~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
-..-. -.|+.+---.-+-.+-+++|+-+ -+..|..-|+- ..+.-..++-++...--|.+||.-|.+++.-+|+
T Consensus 111 ~~~~~----ka~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAE----KAPKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHh----hCCCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 54332 23444332222233333344322 22333333311 1111112233333334467777777777777777
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc--CChHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEA 622 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l--g~~ee 622 (714)
|......++ +.....+.++. |-.++.-=|..-|+++.+.+.++-.+.++ ||..+
T Consensus 184 y~alNVy~A------LCyyKlDYydv------------------sqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 184 YIALNVYMA------LCYYKLDYYDV------------------SQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred hhhhHHHHH------HHHHhcchhhh------------------HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 643222221 11111122222 23344555666666666666666666552 22221
Q ss_pred HH----------------HHH----------HHHHHhCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 623 AM----------------RSL----------QLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al----------------~~~----------~~Al~l~P~----~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+. ... +-|++.-|. -+||..|+...++.+|+.+||+..-. .++|...
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence 11 110 123333332 46789999999999999999987654 5899888
Q ss_pred -HHHHHHHHhhccCCCCCc
Q 005106 673 -AFFLKAYALADSSQDSSC 690 (714)
Q Consensus 673 -a~~~~~~~~~~~~~~~~~ 690 (714)
.|-+||.+.+--+....|
T Consensus 317 ~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHHHHHHHhhhhcCc
Confidence 999999998866554443
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.18 E-value=0.00017 Score=70.93 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
+.++....++++..|+.. -.+.+|+++.++||+.||...|..++. +.-++..+..++.+....+++.+|..-.++..
T Consensus 73 ~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 344444456666667654 456788888888888888888888886 23346666667778888888888888888888
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (714)
+-+|....-.+ .-+.+......+.+.+| -+-+++++.--|+ +.+....+.-|.++||
T Consensus 152 e~~pa~r~pd~----~Ll~aR~laa~g~~a~A------------------esafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 152 EYNPAFRSPDG----HLLFARTLAAQGKYADA------------------ESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hcCCccCCCCc----hHHHHHHHHhcCCchhH------------------HHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 88887632111 11222222233333333 3446666666665 4556667777777777
Q ss_pred hHHHHHHHH----HHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 620 PEAAMRSLQ----LARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 620 ~eeAl~~~~----~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
..||-.-|. ++.+-.|. ..-.++||+-...|+..
T Consensus 209 ~~ea~aq~~~v~d~~~r~~~H--~rkh~reW~~~A~~~~~ 246 (251)
T COG4700 209 LREANAQYVAVVDTAKRSRPH--YRKHHREWIKTANERLK 246 (251)
T ss_pred hhHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHH
Confidence 766655443 33343333 33456777665554443
No 191
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.17 E-value=0.0026 Score=72.61 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=183.5
Q ss_pred HHHHHHHhhhcCCCC-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----cchhh---
Q 005106 347 LYCLLSEVAMNLDPR-SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-----GHIYS--- 417 (714)
Q Consensus 347 ~~~~l~~V~~d~~~r-s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-----~~~~a--- 417 (714)
+.-+..-|..+++.- +...-.++..-.+-.++.+ ..-+..|+.=|...|.++.|...|++||.. ++...
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH
Confidence 334444455555422 2233345544232222221 233456777788899999999999999876 22221
Q ss_pred --HhhHHHHHHHhC-------------CHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH
Q 005106 418 --IAGLARLGYIKG-------------HKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY 482 (714)
Q Consensus 418 --~~~lg~~~~~~G-------------~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay 482 (714)
.+.-.-+..+.+ +.+-.+..|++.+...|- -.=+-+++.||++..-|
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~------------------~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL------------------LLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch------------------HHHHHHHhcCCccHHHH
Confidence 111111111111 111112222222222210 01135788999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILG-FKLA-----L-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~-----~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.+|-.++ .|+..+-+..|..|+. .+|. + ..|...|-+|...|+.+.|..-|++|.+.+=....
T Consensus 353 ~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~-------- 422 (835)
T KOG2047|consen 353 HKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE-------- 422 (835)
T ss_pred Hhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH--------
Confidence 9997665 5788899999999987 4663 2 34555778899999999999999999988644421
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-------------------hhHHHHHHHHHH
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-------------------GVLYFRQSLLLL 615 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~-------------------~~~~~~~g~~L~ 615 (714)
+.|..|.+-.+....-.+++ |+.++++|... |.+ ...|-..+.+..
T Consensus 423 -------------dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 423 -------------DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred -------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 00111222222211222222 34445554443 222 223556666667
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CH--H---HHHHHHHHhhccCCCCC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SF--E---AFFLKAYALADSSQDSS 689 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~-~~--~---a~~~~~~~~~~~~~~~~ 689 (714)
-+|=++.-...|++.+.|.=--+....|.|..|-.-.-|+++.+.|||-|+|=+ .. + .|.-|...-. ++.-+
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry-gg~kl- 566 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY-GGTKL- 566 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh-cCCCH-
Confidence 788888888888888888888888888888888888888888888888888833 22 2 3444444421 22222
Q ss_pred chhhHHHHHHHhhc-CCCC
Q 005106 690 CSSTVVSLLEDALK-CPSD 707 (714)
Q Consensus 690 ~~~~~~~~~~~~~~-~~~~ 707 (714)
...-.|.|.||+ ||.+
T Consensus 567 --EraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 567 --ERARDLFEQALDGCPPE 583 (835)
T ss_pred --HHHHHHHHHHHhcCCHH
Confidence 345567788875 7754
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=2.6e-05 Score=86.55 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKA 471 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kA 471 (714)
.+++++|+..|++..+.+| .+...+++++...++-.+|++.+++++...|..+..+..++.+ ++++.|+....+|
T Consensus 182 t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4689999999999777664 4566788888888887777777777776666665555444432 2335555555555
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~ 503 (714)
+++.|+...+|+.+|.+|..+|++++|+..+|
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555554444
No 193
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.15 E-value=2.2e-06 Score=94.52 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA 497 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~e 497 (714)
+.-.+.-++++.|+..|.+||+++||.+..|.+|+. ...+.+|+.|+.+||+++|+...+|+.||.+.+.++++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344566778888888888888888888888877753 2344899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-HHHH
Q 005106 498 ALAEINRILGFKLA-LECL 515 (714)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~ 515 (714)
|+.+|++...+.|+ +++.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHhhhcCcCcHHHH
Confidence 99999999999997 6643
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=98.15 E-value=3.5e-05 Score=74.84 Aligned_cols=74 Identities=11% Similarity=-0.055 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
++.|+.+|.++..++.+++|+..|-.|..++++|+...++.|.|++.+|+.++|...|+-+|. +|..+.---||
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A 144 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555 34444333333
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=98.14 E-value=1.4e-05 Score=77.51 Aligned_cols=83 Identities=10% Similarity=-0.151 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|...|.-..-+||.++..|+.+|.++..+|+|++|+..|..|..++++ |...+.-|.++..+|+.++|..+|..|++
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 66666777777889999999999999999999999999999999999884 66677788999999999999999999999
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
.|.+
T Consensus 134 -~~~~ 137 (165)
T PRK15331 134 -RTED 137 (165)
T ss_pred -Ccch
Confidence 5776
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=2.9e-06 Score=71.87 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGF----KLA----LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l----~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
|+.+.+|.++|.+|.++|++++|+..|++++++ .++ ..++.+.|.++..+|++++|+..|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455778999999999999999999999999976 222 334677899999999999999999999986
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=5.3e-05 Score=84.09 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus 219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML 297 (395)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence 36778888888888899999999999999999999999999999999999999999999999999999997666 66666
Q ss_pred CCHHHHHHHHHHhhc
Q 005106 669 RSFEAFFLKAYALAD 683 (714)
Q Consensus 669 ~~~~a~~~~~~~~~~ 683 (714)
|..+-+-+|-..-.+
T Consensus 298 ~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 298 TYKDKYKLKRPVPAK 312 (395)
T ss_pred CCccchhhhcCCCcc
Confidence 666666666554333
No 198
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.09 E-value=7e-06 Score=87.38 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=111.1
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCc--c--eEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--E--DIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~--~--~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL 259 (714)
|.+-++++ .|||+.++ .+..||+.||.|+|.|+.- . ...++ ..+..+.+.+++|+|+++-+ +.++-..+++
T Consensus 295 iql~~~~R-yP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvl 369 (516)
T KOG0511|consen 295 IQLPEEDR-YPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVL 369 (516)
T ss_pred cccccccc-ccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence 44444444 99999999 5778999999999999652 2 22333 46678999999999999998 9999999999
Q ss_pred HHHhhhChh--h-HHHHHHHHHHhhcC--CHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChHHHHHHhc
Q 005106 260 IFANKFCCE--R-LKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFS 329 (714)
Q Consensus 260 ~aAd~~~v~--~-L~~~C~~~L~~~l~--~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~ 329 (714)
.+|+++-++ + |+.+-...+.+... +.-++..+++++.+-.+..|......++.+++...+++++..+.+.
T Consensus 370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 999999776 2 66666666655432 2356899999999999999999999999999888888777766553
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.00076 Score=79.31 Aligned_cols=228 Identities=14% Similarity=0.028 Sum_probs=158.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCcHHH--HHHHH--hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 427 IKGHKLWAYEKLNSVISSVTPLGWM--YQERS--LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (714)
Q Consensus 427 ~~G~~~~A~~~~~~aI~~~p~~~~a--y~~rg--~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~ 502 (714)
..+++.+|++...+.++.+||...+ +-... +.+++++|...++.--.+.|++....--+-.+|.++|++++|...|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3467777888888888888774333 32221 3466688888888888888888889999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccc
Q 005106 503 NRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWS 582 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 582 (714)
.|+++-+|+.+.......+|.+-++|.+--+.--+.-+.-|+.+.+++-+.-..+++ ....+...
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~---------- 165 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL---------- 165 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc----------
Confidence 999999999666666778888888887655544444457788876665544433332 22222221
Q ss_pred cccccc-hHH--HHHHHHHhC-CCChhH-HHHHHHHHHHcCChHHHHHHH-HHHHHhCCCChhHHHHHHHHH-HhcCCHH
Q 005106 583 SVDDIG-SLS--VIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSL-QLARQHAASDHERLVYEGWIL-YDTSHCE 655 (714)
Q Consensus 583 ~~~d~~-al~--~~~qaL~l~-P~~~~~-~~~~g~~L~~lg~~eeAl~~~-~~Al~l~P~~~ea~~~~G~~l-y~~G~~e 655 (714)
+.+- +++ .+++.++.. +-...+ -+-.=.+|..+|.++||++.+ ..-.+..|.....+.+++.-+ -.++++.
T Consensus 166 --~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 166 --DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred --cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 1011 233 677777776 222222 223345777899999999999 455566666666666666655 4569999
Q ss_pred HHHHHHHHHHhcCCCH
Q 005106 656 EGLRKAEESIQMKRSF 671 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~ 671 (714)
+-.+.-.+.+.-.|+.
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999999995
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-05 Score=81.85 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++..|+..|.+||-++|+.+..|.||+..++++++++....+.+||++|+|+ ...++..|........|.+||..+++|
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999998 677888999999999999999999999
Q ss_pred HhhC
Q 005106 539 LTLS 542 (714)
Q Consensus 539 l~L~ 542 (714)
..+-
T Consensus 105 ~sl~ 108 (284)
T KOG4642|consen 105 YSLL 108 (284)
T ss_pred HHHH
Confidence 6543
No 201
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.06 E-value=3.8e-06 Score=60.25 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
|++||+++|+|+++++++|++|+..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.06 E-value=1.3e-05 Score=65.88 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R 518 (714)
++|+..|++++..+|++..++..+|.+|+++|++++|...+++++..+|+ +..+..+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888887 4444333
No 203
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0065 Score=67.31 Aligned_cols=278 Identities=13% Similarity=0.086 Sum_probs=162.2
Q ss_pred HHhccchHHHHHHHHHHHhc-c--chhhHhhHHH--HHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHH-H----HhcCCh
Q 005106 393 RLLRKEYDEAEHLFEAAVNA-G--HIYSIAGLAR--LGYIKGHKLWAYEKLNSVISSVTPL-GWMYQE-R----SLYCEG 461 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~-~--~~~a~~~lg~--~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~~-r----g~~~~~ 461 (714)
-...|...-|...|++|++. + ........+. .-..+..++.|--.|.-||.--|.. +.-++. - .++|+.
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcch
Confidence 33567788888888888876 2 2222222333 3344667777777788888877764 222221 1 234433
Q ss_pred ---hHHHH-----HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-H-------HHHH--
Q 005106 462 ---DKRWE-----DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL-R-------FCFF-- 522 (714)
Q Consensus 462 ---~eAl~-----d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~-R-------~~~~-- 522 (714)
++++- .|++-++-+|.+.++|...--+--..|+.+.-...|.|||.--|- .+.-+- | ..+|
T Consensus 297 ~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 297 EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 55553 599999999999999999888888889999999999999987664 221111 1 1233
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH------------HHHHHHhhhhhhHHHH---HHhhhhcccccccc
Q 005106 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL------------HMLVREHIDNWTIADC---WLQLYDRWSSVDDI 587 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~------------~~~l~~~~~~~~~A~~---~~~l~~~~~~~~d~ 587 (714)
+...|.+.+.+.|+.+|.|=|.-..-+.+.=.+.. +..+-.+.+...+... +..+=..+...|+-
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 45689999999999999999985432222111111 1111111111111110 00111111111111
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--DTSHCEEGLRKAEESI 665 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly--~~G~~eeAl~~ye~Ai 665 (714)
-..|++-|+-+|.+-.+|...|.+-..||+-+.|...|..|+.-..-+.--+....-|-+ ..|.++.|-+.|++-+
T Consensus 457 --RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 457 --RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred --HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 225666666677777777777776667777777777777666655444333333343332 2366777777777776
Q ss_pred hcCCCHH
Q 005106 666 QMKRSFE 672 (714)
Q Consensus 666 ~i~~~~~ 672 (714)
...+-..
T Consensus 535 ~rt~h~k 541 (677)
T KOG1915|consen 535 DRTQHVK 541 (677)
T ss_pred Hhcccch
Confidence 6655554
No 204
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.02 E-value=3.7e-06 Score=74.99 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=67.7
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCC
Q 005106 288 AVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (714)
Q Consensus 288 ~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~ 359 (714)
|++++.+|..+++..|...|.+++..||.. .|+.+.+..+++++++. +..|..++.++++|+.++..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence 788889999999999999999888888865 77888999999999884 67788999999999999987
Q ss_pred CCchhHHHHHHHHHHhh
Q 005106 360 PRSDKTVCFLERLLESA 376 (714)
Q Consensus 360 ~rs~~~~~LLe~Lv~~a 376 (714)
.|.++...|++. +|++
T Consensus 76 ~r~~~~~~Ll~~-iR~~ 91 (103)
T PF07707_consen 76 NREEHLKELLSC-IRFP 91 (103)
T ss_dssp HHTTTHHHHHCC-CHHH
T ss_pred HHHHHHHHHHHh-CCcc
Confidence 788888888876 5543
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.01 E-value=5.2e-06 Score=59.58 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
|+|||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.98 E-value=0.00065 Score=67.00 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~~~~~~eAl~d~~kAi-~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.+.=|++.+++...+.++.-|. ++.+..+.|.+ .||...|.+|+ .+-.+++.-...++.+....+++.+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~---~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRY---HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhh---hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3334444444444445554443 34444445444 77777776665 35667777888899999999999999
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 499 LAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 499 l~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
...+++..+.+|. ++.....+.++..+|++++|...|+.++.--|+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999999999994 66666678889999999999999999999999863
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.92 E-value=0.056 Score=58.99 Aligned_cols=287 Identities=16% Similarity=0.117 Sum_probs=200.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--cchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~rg~ 457 (714)
...|.+..-.|+-..|.+.=.++-++ ..... +..-+..-...|+++.|.+-|+..+. +|. +--.|.+-..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 35688888899999998888877644 22222 23335677889999999999985544 342 2233333334
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH------HHhcCCHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF------FLALEDYQ 529 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~-~~R~~~------~~~lgd~e 529 (714)
.|..+-|..+-++|-+..|....++...=....+.|+++.||.-.+...+-.- ..+.. ..|+.+ -.---|..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 46668899999999999999999999999999999999999998887665432 22211 122221 22335789
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~ 608 (714)
.|..+-..+++|.|++..+. .........- ++.+ +-.+++.+...+|--..+
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaa------v~AAralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia-- 299 (531)
T COG3898 247 SARDDALEANKLAPDLVPAA------VVAARALFRD-------------------GNLRKGSKILETAWKAEPHPDIA-- 299 (531)
T ss_pred HHHHHHHHHhhcCCccchHH------HHHHHHHHhc-------------------cchhhhhhHHHHHHhcCCChHHH--
Confidence 99999999999999995421 1111011111 2222 245789999998864332
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH---HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLAR---QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al---~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~ 685 (714)
.++.+..--+-++.-+++|- .+.|+|.+........-++-|+|..|-...|.++.+.|.--+|.|.|-.=+-..
T Consensus 300 ---~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 300 ---LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET 376 (531)
T ss_pred ---HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence 23333333344555555554 568999999999999999999999999999999999999889988875543222
Q ss_pred CCCCchhhHHHHHHHhhcCCCC
Q 005106 686 QDSSCSSTVVSLLEDALKCPSD 707 (714)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~ 707 (714)
=| --.|-+.|-.|+|-|-|
T Consensus 377 GD---qg~vR~wlAqav~APrd 395 (531)
T COG3898 377 GD---QGKVRQWLAQAVKAPRD 395 (531)
T ss_pred Cc---hHHHHHHHHHHhcCCCC
Confidence 23 34799999999999977
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.90 E-value=0.00028 Score=67.19 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+..+++.|...++.|+|++|+..|+....--|. ..+-..++.+|...|++++|+..+++-++|+|++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 467888999999999999999999999998883 344455889999999999999999999999999853
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.88 E-value=0.0035 Score=65.05 Aligned_cols=146 Identities=19% Similarity=0.198 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~ 454 (714)
...+|+-|...++.|+|++|+..|++.....| ..+...++-++++.|+++.|+...++-|.++|+ -..+++-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 45678999999999999999999999876643 335667888999999999999999999999874 5677777
Q ss_pred HHhcCC------------hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005106 455 RSLYCE------------GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (714)
Q Consensus 455 rg~~~~------------~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (714)
+|.... -.+|+.+|...|.--|+...+---. .++-....+++..+.+| |..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~----~~i~~~~d~LA~~Em~I------------aryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK----ARIVKLNDALAGHEMAI------------ARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH----HHHHHHHHHHHHHHHHH------------HHHH
Confidence 775310 0455556666666666554322111 11111222222222222 3567
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 005106 523 LALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.+.|.+..|+.-++.+++-=|+
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred HHhcChHHHHHHHHHHHhcccc
Confidence 7777777777777777766444
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.86 E-value=0.0001 Score=70.12 Aligned_cols=73 Identities=21% Similarity=0.121 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQER 455 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~r 455 (714)
..+++-|...++.|+|++|++.|+.....-| ..+...+|-+|++.|++++|+..+.+-|+++|+ ...+|+.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 4556777777777777777777777544421 223445666666666666666666666666553 23444444
Q ss_pred H
Q 005106 456 S 456 (714)
Q Consensus 456 g 456 (714)
|
T Consensus 91 g 91 (142)
T PF13512_consen 91 G 91 (142)
T ss_pred H
Confidence 4
No 211
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.82 E-value=2.1e-05 Score=83.69 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=79.0
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~ 501 (714)
+..|.++.|++.|.++|+++|.++..|-.|+.. .+...|+.||+.|++++|+.+..|..||.+...+|.+++|-.+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 556889999999999999999999999999753 4458999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH
Q 005106 502 INRILGFKLAL 512 (714)
Q Consensus 502 ~~kAL~l~P~~ 512 (714)
+..|.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99999987653
No 212
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=4.7e-05 Score=77.45 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|+.+|-+||.++|..+.+|.|++++++++++++-...+.++|+++.|+.+-+++.+|.++.....|++|+....||.++
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999775
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00049 Score=72.05 Aligned_cols=177 Identities=18% Similarity=0.062 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+||+.+.--.+-+|..-....-+|.+|...++|.+|...|.+.-.+-|...-| ..-+..+...+.+.+|++.......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 677777777777788777788888888888888888888888888888864333 3355667777888888775544322
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC--CChhHHHHHHHHHHHcC
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P--~~~~~~~~~g~~L~~lg 618 (714)
- |+- +....++ +.| -+.++-|..++-+.++| -| +.++..++.|-++.+-|
T Consensus 107 ~-~~L-----~~~~lqL-----------qaA-------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PAL-----HSRVLQL-----------QAA-------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HHH-----HHHHHHH-----------HHH-------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence 1 211 1111222 222 22333344445555444 35 67888999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+|+|+.-++.|++..--++-.-+|.+.+.|..|+++.|+..-.+.|+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766554
No 214
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00025 Score=72.42 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~ 462 (714)
-++++.|+-++..|+|+||+..|..||.. +.. ...-+=|..+. ++.-..-+.+.-|....+.+-|.| -
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-------~lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~---y 247 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-------QLKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEY---Y 247 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-------HhccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHH---H
Confidence 35689999999999999999999998754 110 00111122221 111122233444555666666555 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~ 514 (714)
++++..+..+..+|++..||+.||-+...-=+.+||-+||.++|+++|....
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 7777777778888888888888888777777778888888888877776443
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=5.5e-05 Score=53.63 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+++++++|.+++.+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566677777777777777777777777777664
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00054 Score=71.50 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
.|+.+..+...|+|.+|+..|.+=|+.-| ..|+++||.+++.+|++.+|...|.++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 78888999999999999999999998843 557899999999999999998888877777763
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
.|.-+++++.+|.++.++|+.++|-+.|+.+++--|+.+..
T Consensus 211 --------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 211 --------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred --------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 35556788999999999999999999999999999975543
No 217
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.12 Score=57.57 Aligned_cols=317 Identities=12% Similarity=0.090 Sum_probs=209.2
Q ss_pred HHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChh
Q 005106 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGD 462 (714)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~ 462 (714)
.|.--..++++..|...|++||..++.+ .|...+-.-.+......|...+++||.+.|.....|+.-- .++...
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 3444566788999999999999886544 3444556666777888899999999999998777766531 123338
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
+|...|++=++..|+- .+|..--.-=.+-+..+-|-..|.|-+-.-|+...|.--+-+-.+-|..+-|...|.+|++.=
T Consensus 159 gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 8889999999999974 577766666666778888888998888878887777666667778888888888888888865
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccc----------------cccccc----hHH-----HHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWS----------------SVDDIG----SLS-----VIYQM 596 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~----------------~~~d~~----al~-----~~~qa 596 (714)
.+..+... ....-.......+.++.|...-+. .|.+. ..+|.. ++. .|+..
T Consensus 238 ~~d~~~e~---lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 238 GDDEEAEI---LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 55432110 001111111222222222111000 01111 112222 122 78999
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH----HHHHH------hcCCHHHHHHHHHHHHh
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----GWILY------DTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~----G~~ly------~~G~~eeAl~~ye~Ai~ 666 (714)
+..+|-|-++||..=.+....|..+.-++.|++|+.--|--.+--+.+ =|+-| ...+.+.+-+.|...|.
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888744432222 23333 35899999999999999
Q ss_pred cCCCHHHHHHHHHHhhc----cCCCCCchhhHHHHHHHhh-cCCCCccccC
Q 005106 667 MKRSFEAFFLKAYALAD----SSQDSSCSSTVVSLLEDAL-KCPSDRLRKG 712 (714)
Q Consensus 667 i~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 712 (714)
|=|--.==|-|-+.++- --+|-.-. -+.|-.|+ +||-|.|=||
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~A---RkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGA---RKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHH---HHHHHHHhccCCchhHHHH
Confidence 98865433334333331 12232222 23444554 7998887665
No 218
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.66 E-value=6.8e-05 Score=66.31 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=69.7
Q ss_pred EEEEEcCeEEEeehhhhh-cCCHHHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCCCCHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLA-a~S~yF~amF~~~---~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~i~~~~v~~l 258 (714)
|+|.|||+.|.+-+..|. ....+|..||.+. ........+-|. -+|..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999974 444556778776 799999999999999 77772235678899
Q ss_pred HHHHhhhChhhH-HHHH
Q 005106 259 LIFANKFCCERL-KDAC 274 (714)
Q Consensus 259 L~aAd~~~v~~L-~~~C 274 (714)
+.-|++|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7776
No 219
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.0003 Score=72.01 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=83.2
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC-c-CCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC--HHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~-E-s~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~--~~~v~~lL 259 (714)
|.+-|||+.|..++.-|.=..-+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 678999999999999999999999999999873 2 234668887 7999999999999988877 65 45688999
Q ss_pred HHHhhhChhhHHHHHHHHHHhhcC
Q 005106 260 IFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 260 ~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.=|.+|.++.|++.|..-+.....
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccc
Confidence 999999999999999998887654
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00012 Score=55.44 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
+.+|+.+|.++..+|++++|++.|+++++.+|+|++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678899999999999999999999999999999999888874
No 221
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0059 Score=63.29 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCC
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ-AALCDVQAILTLSP 543 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e-~Al~d~~~al~L~P 543 (714)
.-+.+|+++|.+.-.|.+|-.++..++ ...+=+..++.+++-+| +.+.|+.|..+...+|+.. .=+.-...++..|.
T Consensus 65 LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 65 LTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred HHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 334455555555555555555554443 23444444455555555 2555555555544445444 33444444444444
Q ss_pred Cc
Q 005106 544 DY 545 (714)
Q Consensus 544 ~~ 545 (714)
++
T Consensus 145 KN 146 (318)
T KOG0530|consen 145 KN 146 (318)
T ss_pred cc
Confidence 43
No 222
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.57 E-value=0.00011 Score=51.96 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.+|+++|.++..+|++++|+..|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
No 223
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.55 E-value=4.1e-05 Score=78.47 Aligned_cols=57 Identities=25% Similarity=0.193 Sum_probs=44.8
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcCC---------cceEEeCCCCCCHHHHHH-HHHhhccCCCC
Q 005106 191 EKIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLRI-ISDFSVTGSLN 248 (714)
Q Consensus 191 ~~f~aHr~VLAa~S~yF~amF~~~~~Es~---------~~~I~l~~~~i~~~~~~~-lL~f~Ytg~l~ 248 (714)
.+|.||+.|.|++|++||.++....+|.. ..+|.+.+ -|-|.+|.. ++.|+||++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 37999999999999999999976554432 35677776 566777664 68999999887
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0013 Score=68.59 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
.++-|.-+...|+|.+|...|..=|.--|+ +.+++.+|.++..+|+|++|...|.++.+--|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 667777788888888888888888888884 4667778888888888888888888888877775
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
|+-+++.+-+|.++.++|..++|-..+++.+.--|+.
T Consensus 212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 6667888888888888888888888888888888876
Q ss_pred hhHH
Q 005106 638 HERL 641 (714)
Q Consensus 638 ~ea~ 641 (714)
.-|-
T Consensus 249 ~aA~ 252 (262)
T COG1729 249 DAAK 252 (262)
T ss_pred HHHH
Confidence 6543
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.50 E-value=0.029 Score=60.53 Aligned_cols=262 Identities=14% Similarity=0.047 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----
Q 005106 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---- 447 (714)
Q Consensus 379 ~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---- 447 (714)
......++-++...+...-++.+++.+-+.-+.+. +-+++.-+|+++.-+|.++++++.|++|...-.+
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 33455677777777777677777777766666552 2344556788888888888888888888876433
Q ss_pred ---------cHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 448 ---------LGWMYQERSLYCEGDKRWEDLDKATALDPTLS----------YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 448 ---------~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~----------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
+|..|-... ++++|+-...||.+|--+.. -+.+.++.+|..+|+.-.|.+..+.|-++
T Consensus 159 ~LElqvcv~Lgslf~~l~---D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLK---DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred eeeeehhhhHHHHHHHHH---hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 333333333 33778777777777655443 45677899999999999999999999887
Q ss_pred CCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 KLA--LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ~P~--~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
... ..+.+ ..|.+|...||.|.|-+-|+.|...-..--.-.|++.+..- .|.||..+--.
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g------------~Akc~~~~r~~- 302 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG------------AAKCLETLRLQ- 302 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH------------HHHHHHHHHHh-
Confidence 542 22333 34678999999999999999998754332111122333222 23333222111
Q ss_pred ccccccchHHHHHHHHHhCCCC----h--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPK----G--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~----~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
...-.-+++....++|++...- . ..+-+.+.++--+|..++=-..+.+|-+.. .+.-.|-|.+=...|--+
T Consensus 303 ~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~ 379 (518)
T KOG1941|consen 303 NKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKN 379 (518)
T ss_pred hcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCc
Confidence 0011123566666666664321 1 236677777777888777777777765553 556677777766666666
Q ss_pred HHHH
Q 005106 656 EGLR 659 (714)
Q Consensus 656 eAl~ 659 (714)
|-++
T Consensus 380 e~Lq 383 (518)
T KOG1941|consen 380 ERLQ 383 (518)
T ss_pred cccc
Confidence 6554
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0037 Score=64.73 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
..-+....++..+|.|.-.+..++++|+.+|. +.....+|-+-.+-||.+.|...|+++-+-+-.-....+.+...-.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667888999999999999999999999863 6666677888999999999999999776433221100000000000
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
...+---.. +-..+...++.+++.||.++.+-+|+++++.-+|+..+|+...+.+++..|.
T Consensus 258 ~a~i~lg~n------------------n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQN------------------NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheeccc------------------chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 000000001 1111344566677777777777777777777777777777777777777765
No 227
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.48 E-value=0.00013 Score=64.27 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhhc--------cCCCChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCCC
Q 005106 289 VELMGYAIEENSPVLAVSCLQVFLREL--------PDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360 (714)
Q Consensus 289 l~l~~~A~~~~~~~L~~~c~~~~l~~~--------~~~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~ 360 (714)
+.++.+|..++++.|.+.|.+++..|| +..|+.+.+..++.++++. +..|..++.+++.|+.++...
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~~~ 76 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDPER 76 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCHHH
Confidence 344455555555555555555544443 3367888999999999884 667889999999999998743
Q ss_pred CchhHHHHHHHHHHh
Q 005106 361 RSDKTVCFLERLLES 375 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~ 375 (714)
+. ....++++ +++
T Consensus 77 ~~-~~~~ll~~-ir~ 89 (101)
T smart00875 77 RR-HLPELLSH-VRF 89 (101)
T ss_pred HH-HHHHHHHh-CCC
Confidence 33 66677776 443
No 228
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.032 Score=65.23 Aligned_cols=266 Identities=14% Similarity=0.013 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhc-----cchHHHHHHHHHHHh-------ccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLR-----KEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISS 444 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~-----g~y~eA~~~f~~AL~-------~~~~~a~~~lg~~~~~~G-----~~~~A~~~~~~aI~~ 444 (714)
+..+.+.+|.++..- ++.+.|+.+|..|.+ .+...+.+++|++|.... +...|+..|.++...
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 345666777776653 689999999999888 567778899999998854 677899999999999
Q ss_pred CCCcHHHHHHHHh-cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCHHHH
Q 005106 445 VTPLGWMYQERSL-YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----QNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 445 ~p~~~~ay~~rg~-~~----~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l----~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
..+.+..+...-. .+ ....|...|..|.. -.+..+++++|..|..= .+...|...|.||-+.+ .+.+.
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Confidence 8776665554421 11 23688888877764 46778899998888743 47889999999999887 55545
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 516 ELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 516 ~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+.++.++... ++++.+..-+....++.-...... +..+.. ... ..+.......+...+...+.
T Consensus 400 ~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~----a~~l~~----~~~--------~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 400 YLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN----AAYLLD----QSE--------EDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH----HHHHHH----hcc--------ccccccccccchhHHHHHHH
Confidence 5555433222 888888887777766654432211 111100 000 01111100111111233333
Q ss_pred HHHHhCCCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQ 666 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~l----g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~----G~~eeAl~~ye~Ai~ 666 (714)
++ ..++++.+.+.+|.++..- ..++-|...|.+|-.-. +.+.+|+|+++-.- + +..|...|.+|.+
T Consensus 464 ~a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 464 RA--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred HH--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 33 3467888888888888774 45889999999999888 99999999997643 4 7899999999988
Q ss_pred cCCCHH
Q 005106 667 MKRSFE 672 (714)
Q Consensus 667 i~~~~~ 672 (714)
.+...-
T Consensus 538 ~~~~~~ 543 (552)
T KOG1550|consen 538 EDSRAY 543 (552)
T ss_pred cCchhh
Confidence 665443
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.42 E-value=0.14 Score=55.96 Aligned_cols=248 Identities=14% Similarity=0.074 Sum_probs=176.1
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhhHhhHHH---HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----HhcCChh
Q 005106 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR---LGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGD 462 (714)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~---~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~~~~~~ 462 (714)
...-+.-|+|++|.+-|+.-+.-.... ..|+-. --..+|+.+.|..+-.++-+.-|.+.|+.... -.-++.+
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDDPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 444556799999999999876542222 233222 23568999999999999999999999988654 3456779
Q ss_pred HHHHHHHHHH---hcCCCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 463 KRWEDLDKAT---ALDPTLSY-----PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 463 eAl~d~~kAi---~LdP~~~~-----ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
+|+...+... -+.|+-+. .+...+..+.+. +...|..+-..+++++|+ ..+...-+.++.+.|+..++-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 9988766433 34444332 222334444443 478899999999999998 4555666778999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
-++.+.+.+|.-.- + .+|-...+-|-.- -+.-..+--++-|++.+..+..+.
T Consensus 285 ilE~aWK~ePHP~i-----------------------a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 285 ILETAWKAEPHPDI-----------------------A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred HHHHHHhcCCChHH-----------------------H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999998521 1 2222222222110 123344456778999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~i 667 (714)
.-+.-|.+-.|..-.+.+.+..|... ++.-++-| --.+|+-.+.-+..-|+++-
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999966 44444444 34569999999888888874
No 230
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.40 E-value=0.00022 Score=50.13 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+++++++|.+++.+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 345666666666666666666666666666664
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.38 E-value=0.037 Score=57.56 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=126.8
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 005106 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (714)
Q Consensus 413 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l 492 (714)
.|+.-++.-|....+.|++.+|++.|++....+|..+++ ++ +...++-+++..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~q-------------------------a~l~l~yA~Yk~ 84 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQ-------------------------AQLDLAYAYYKN 84 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HH-------------------------HHHHHHHHHHhc
Confidence 355556666666788899999999888888888765554 22 335567788888
Q ss_pred CCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 493 QNVEAALAEINRILGFKLA-L---ECLELRFCFFLA--------LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 493 ~r~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~--------lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+++++|+..+++=|.+.|+ + .+++.+|..+.. ..--.+|+.+|+..++-=|+..-. .-+......
T Consensus 85 ~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---~dA~~~i~~ 161 (254)
T COG4105 85 GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---PDAKARIVK 161 (254)
T ss_pred ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---hhHHHHHHH
Confidence 9999999999999999884 2 334567765332 333467888888899888886321 001111111
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---C
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---D 637 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~ 637 (714)
+... |+-.+- ..|..+.+-|.+.+|..-++..++--|+ -
T Consensus 162 ~~d~-------------------------LA~~Em-------------~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 162 LNDA-------------------------LAGHEM-------------AIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred HHHH-------------------------HHHHHH-------------HHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 1111 111111 2344556666666666666666666444 3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.+++..+..+++.+|-.++|= ...+.|..+...-.|.--+|.+..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 204 REALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQ 248 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhccc
Confidence 467777777778888777775 666777765555556666665543
No 232
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0044 Score=68.81 Aligned_cols=276 Identities=17% Similarity=0.125 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc-------c----c---------hhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------G----H---------IYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~----~---------~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
.-++++|+|+++++.|.|.-++.+|.+|++- + + -...++.|..+...|++..|+.+|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 4567789999999999999999999999961 1 1 123678999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHhcCCh-----------------------------------------------------hHHHHHH
Q 005106 442 ISSVTPLGWMYQERSLYCEG-----------------------------------------------------DKRWEDL 468 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~~~~~-----------------------------------------------------~eAl~d~ 468 (714)
+..+..++..|...+..|.. +=|.-++
T Consensus 362 v~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCL 441 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCL 441 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHH
Confidence 99988888888776432100 2233344
Q ss_pred HHHHhcCCCCh--HHHHHHHHHHHhcCCHHHH------------HH-HHHHHHhcCCC-HHHHH--------HHHHHHHh
Q 005106 469 DKATALDPTLS--YPYMYRASSLMTKQNVEAA------------LA-EINRILGFKLA-LECLE--------LRFCFFLA 524 (714)
Q Consensus 469 ~kAi~LdP~~~--~ay~~rg~~l~~l~r~~eA------------l~-~~~kAL~l~P~-~~~~~--------~R~~~~~~ 524 (714)
+.|+-|-|.-- ....+.|..--+.|.-.|- -. -+.-+..-.|. .+.+. +-+++-++
T Consensus 442 rnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~ 521 (696)
T KOG2471|consen 442 RNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELE 521 (696)
T ss_pred HhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45554443210 0001111111111110000 00 00000000111 11111 12344566
Q ss_pred cCCHHHHHHHHHHHHhhCCCc--hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH--HHHHH----
Q 005106 525 LEDYQAALCDVQAILTLSPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL--SVIYQ---- 595 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~--~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al--~~~~q---- 595 (714)
+||.-.|+..-++.+++.-=. .-+.|++=|...+. ..++..+|-++.+-|.. ..++++ .. .++++
T Consensus 522 Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~----lldr~seA~~HL~p~~~--~~~~f~~~~n~~Df~~~~~~ 595 (696)
T KOG2471|consen 522 LGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALC----LLDRPSEAGAHLSPYLL--GQDDFKLPYNQEDFDQWWKH 595 (696)
T ss_pred hcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH----HcCChhhhhhccChhhc--CCcccccccchhhhhhhhcc
Confidence 666666666666666653211 12334433322222 12233333322222111 122332 11 13333
Q ss_pred ----------HH-----HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHhcCCHHHHH
Q 005106 596 ----------ML-----ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 596 ----------aL-----~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P--~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+- ..+..-...++|+|.++...|.++.|...+..|..+-| .+.+|....=.+-+.+|+.+.|+
T Consensus 596 ~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al 675 (696)
T KOG2471|consen 596 TETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDAL 675 (696)
T ss_pred ccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchH
Confidence 11 11122234589999999999999999999999999999 78999999999999999999999
Q ss_pred HHHHH
Q 005106 659 RKAEE 663 (714)
Q Consensus 659 ~~ye~ 663 (714)
+...|
T Consensus 676 ~~lk~ 680 (696)
T KOG2471|consen 676 ARLKQ 680 (696)
T ss_pred HHHHh
Confidence 87765
No 233
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.041 Score=57.20 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=139.5
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-----CChhHHHHHHHHHH
Q 005106 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-----CEGDKRWEDLDKAT 472 (714)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-----~~~~eAl~d~~kAi 472 (714)
+|.++..+|+..|..+ ..-..|+.....+|.++|.+-.+|+-|-.+ ....+-++.++..|
T Consensus 41 ~fr~~m~YfRAI~~~~---------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~ 105 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKN---------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII 105 (318)
T ss_pred hHHHHHHHHHHHHhcc---------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566666666554443 333566777788999999887777766432 12366778899999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVE-AALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~-eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
+-+|.+.+.|..|-.+.-.+|.+. .=++...++|..+. +..+|..|-|+....++|+.=+......|+.|--|
T Consensus 106 e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N----- 180 (318)
T KOG0530|consen 106 EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN----- 180 (318)
T ss_pred HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----
Confidence 999999999999999999999888 78899999998877 48899999999999999999999999999988644
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch-------HHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS-------LSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a-------l~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
=-+|.+.|..+....+.-. +...-.+|.+-|++-.+|+.+.-++..
T Consensus 181 --------------------NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 --------------------NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --------------------cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1257777777776544432 446677889999999999888777765
No 234
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0041 Score=63.79 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=94.3
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
..++...|+-++.+|++.+|...|..||..-.+ ++-+-.- ++. .=++|+.-....+.|...++...|.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~----L~lkEkP--~e~------eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN----LQLKEKP--GEP------EWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH----HHhccCC--CCh------HHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 445677888899999999999999988875211 0000000 011 1233444456788999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|-|+++..+.+|...|. ..+++.||-++...=+.++|.+||.++++++|...
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 99999999999999995 78899999999999999999999999999999863
No 235
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.30 E-value=0.054 Score=62.27 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=190.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----------cH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP----------LG 449 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~----------~~ 449 (714)
+...|..|-..|+++.|...|++|.+.+.. ..|..-|-.-....+++.|++.+.+|...=.+ -.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 356788888899999999999999988432 23444555666677888999988887754111 01
Q ss_pred HHHHHH-----HhcCChhH-------HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHH
Q 005106 450 WMYQER-----SLYCEGDK-------RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LEC 514 (714)
Q Consensus 450 ~ay~~r-----g~~~~~~e-------Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~ 514 (714)
++-.-+ +.|-+++| -.+.|++.|+|-=--++.-+|-|+.+-+-+-+++|...|+|.|.+=| + .+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 111111 22333344 45789999999999999999999999999999999999999999743 4 566
Q ss_pred HHH-H--HHHHHhcCCHHHHHHHHHHHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhh
Q 005106 515 LEL-R--FCFFLALEDYQAALCDVQAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIAD----------CWLQLY 578 (714)
Q Consensus 515 ~~~-R--~~~~~~lgd~e~Al~d~~~al~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~ 578 (714)
|.. + +.-....-..+.|...|++|++..|--.. |.-..-....-|+.++...-++.|. .|.-..
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 643 2 23344444789999999999999984311 2222222233344444444443332 111111
Q ss_pred hcccc-ccccchHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 579 DRWSS-VDDIGSLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 579 ~~~~~-~~d~~al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
-+-.. ++-..--..|++||+.=|.+- +...+-+..-.++|..+.|..+|.-.-++-|-....-+.-.|--+...|=.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 11000 011112338999999977653 345667777888999999999999888887776777777777766553333
Q ss_pred HHHHHHHHHHhcCCCHHHHHH
Q 005106 656 EGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~~a~~~ 676 (714)
| .-|+.-++|++|.+|=|+
T Consensus 710 e--dT~keMLRikRsvqa~yn 728 (835)
T KOG2047|consen 710 E--DTYKEMLRIKRSVQATYN 728 (835)
T ss_pred H--HHHHHHHHHHHHHHHhhh
Confidence 3 357888888888886554
No 236
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.30 E-value=0.0011 Score=58.12 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=63.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHHHhh-----ccCC------CCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~i~~~~~~~lL~f~-----Ytg~------l~~ 249 (714)
|+++- +|.+|-..|- +|.-|+-.|+||.|... |...++|.+++ |....++.+.+|+ ||+. .+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 66665 5566666554 68899999999998654 55668999995 9999999999987 6665 33
Q ss_pred CCHHHHHHHHHHHhhhCh
Q 005106 250 VTPNLLLEILIFANKFCC 267 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v 267 (714)
|+++.+++||.+|+++.+
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 789999999999998864
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.29 E-value=0.014 Score=71.59 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--HHHHH---HHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA--LECLE---LRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~--~~~~~---~R~~~~~~lgd~e~Al~d~ 535 (714)
.+-.+||++-+.-+|+.+..|++-=.-..+++..++|-+.+.|||. +|+. .+.++ ..-++-..-|.-+.-.+-|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3445677888888888888888777777778888888888888876 4553 22222 2222334445666666677
Q ss_pred HHHHhhCCCchhhh------hhHH-HHHHHHHHHHhhhhhh-HHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--Ch
Q 005106 536 QAILTLSPDYRMFE------GRVA-ASQLHMLVREHIDNWT-IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KG 604 (714)
Q Consensus 536 ~~al~L~P~~~~~~------~~~~-a~~~~~~l~~~~~~~~-~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~--~~ 604 (714)
++|-+..--|.-+. -+.+ -...-..++..++.+. +-..|....+.+-+.++.+ |-.++.+||..-|. +.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 77776655442211 0000 0000011111122221 3344555555555555544 34466666666666 55
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHhh
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALA 682 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~--~a~~~~~~~~~ 682 (714)
+.----+.+-++.|+.|.+...++--+.-.|.-.+.+...--.-.+.|+-+-.-..|||+|.+.=+- .-||.|=|.-+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 5555556666666666666666666666666666666666666666677777777777777764333 35555555444
Q ss_pred ccC
Q 005106 683 DSS 685 (714)
Q Consensus 683 ~~~ 685 (714)
.++
T Consensus 1681 Ek~ 1683 (1710)
T KOG1070|consen 1681 EKS 1683 (1710)
T ss_pred HHh
Confidence 443
No 238
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.019 Score=58.80 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC
Q 005106 462 DKRWEDLDKATALDPTLS------YPYMYRASSLMTK-QNVEAALAEINRILGFKLA-------LECLELRFCFFLALED 527 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~------~ay~~rg~~l~~l-~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd 527 (714)
.+|+..+++||++--+.- ..++.+|.+|-.. .+++.||+.|+.|-++-.. ..|+.--+..-..+|+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666433321 2233455555443 6666666666666654321 1122222333445555
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 005106 528 YQAALCDVQAILTLSPDY 545 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~ 545 (714)
|.+||.-|+++..-.-++
T Consensus 170 Y~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 666666555555554444
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.00049 Score=48.34 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+.+|.++..+|++++|+..+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 240
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0016 Score=69.35 Aligned_cols=75 Identities=21% Similarity=0.129 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF---KLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l---~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
+..|..=|+=|+.-+||..|+..|.+.|+- ||+ .-+|.||+.+...+|+|-.||.|+.+|+.++|.+.-++.|++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 566778899999999999999999999987 454 455788999999999999999999999999999966555543
No 241
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.17 E-value=0.073 Score=62.24 Aligned_cols=270 Identities=14% Similarity=0.006 Sum_probs=176.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHh-----CCHHHHHHHHHHHHh-------c-----CCCcH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVIS-------S-----VTPLG 449 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~-----G~~~~A~~~~~~aI~-------~-----~p~~~ 449 (714)
...|......++..+|..+|+.+-+.++..+...+|.+++.- .+.+.|+.++..+.+ . .-.+|
T Consensus 216 ~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 216 EGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred cccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence 344444555556789999999999999999999999987754 589999999999887 2 22478
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 005106 450 WMYQERSLYC--EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA 524 (714)
Q Consensus 450 ~ay~~rg~~~--~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~ 524 (714)
.+|.+..... ..+.|+..|.+|-++.. +.+.+.+|.++..-. ++..|...|.+|...- ...+.+..+.+|..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYEL 372 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Confidence 8887764322 45889999999998865 566788888888766 4679999999998432 34444444443322
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 525 ----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 525 ----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
.-+.+.|...|.+|-+.++-.++ -+..+....+ +..++.+.. ...+.++..++... ...+.
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~~~A~--~~~~~~~~~g-----~~~~~~~~~-~~~~~a~~g~~~~q----~~a~~--- 437 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGNPSAA--YLLGAFYEYG-----VGRYDTALA-LYLYLAELGYEVAQ----SNAAY--- 437 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccChhhH--HHHHHHHHHc-----cccccHHHH-HHHHHHHhhhhHHh----hHHHH---
Confidence 23899999999999999832211 1122222211 134444422 12222222222111 11111
Q ss_pred CCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CC-HHHHHHHHHHHHhcCCCHH
Q 005106 601 APKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SH-CEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~-~eeAl~~ye~Ai~i~~~~~ 672 (714)
...+...... ....+.+...+.++.. +.+.+|...+|.+++.- ++ ++.|...|.+|-... -.
T Consensus 438 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~ 507 (552)
T KOG1550|consen 438 ------LLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQ 507 (552)
T ss_pred ------HHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hH
Confidence 1111100011 2356667777777765 45888999999999886 44 999999999998888 55
Q ss_pred HHHHHHHHhhcc
Q 005106 673 AFFLKAYALADS 684 (714)
Q Consensus 673 a~~~~~~~~~~~ 684 (714)
+.|+-||-..=.
T Consensus 508 ~~~nlg~~~e~g 519 (552)
T KOG1550|consen 508 ALFNLGYMHEHG 519 (552)
T ss_pred HHhhhhhHHhcC
Confidence 999999987643
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.14 E-value=0.028 Score=63.17 Aligned_cols=44 Identities=9% Similarity=-0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHh--cCChhHHHHHHHHHHhc
Q 005106 431 KLWAYEKLNSVISSVTPLGWMYQERSL--YCEGDKRWEDLDKATAL 474 (714)
Q Consensus 431 ~~~A~~~~~~aI~~~p~~~~ay~~rg~--~~~~~eAl~d~~kAi~L 474 (714)
+...++.-.+|++++|+.+.||.-++. ..-..||.+.|.||++-
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH
Confidence 344455556677777777777666643 11225666666666653
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.02 Score=60.52 Aligned_cols=157 Identities=16% Similarity=0.062 Sum_probs=106.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 005106 485 RASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~ 563 (714)
-|.-.++.|++.+|...|..+++..|+ .++....+.+|...|+.++|..-+...-.-..+. ... + +..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~--~-l~a 208 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAH--G-LQA 208 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHH--H-HHH
Confidence 344566778888888888888888885 5666667778888888887766554432222221 000 0 222
Q ss_pred hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHH
Q 005106 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERL 641 (714)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~ 641 (714)
.++...+| ...+ -...+.+.+..||.+.++.+-.+..+...|++++|++.+=..++.+-+ +.++-
T Consensus 209 ~i~ll~qa----------a~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 209 QIELLEQA----------AATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred HHHHHHHH----------hcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 22233333 2222 245789999999999999999999999999999999998888877654 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
-.+=.++.-.|.-|...-.|+|=+
T Consensus 276 k~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666666777777777777776643
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.085 Score=58.26 Aligned_cols=198 Identities=13% Similarity=-0.093 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHH---hCCHHHHHHHHHH-HHhcCCCcHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYI---KGHKLWAYEKLNS-VISSVTPLGWMY 452 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~---~G~~~~A~~~~~~-aI~~~p~~~~ay 452 (714)
....+++=..|-..++|+.=+...+..=.+ +....-...|.++.+ .|+.++|+..+.. .....++.+.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344456666777788888777777753322 111122234555555 6777777777766 333445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al 532 (714)
.-.|.. .-+..++-++++... .+.|+..|.|+.+++|+.....|.+.++...|.-.+..
T Consensus 221 gL~GRI--------yKD~~~~s~~~d~~~-------------ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI--------YKDLFLESNFTDRES-------------LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH--------HHHHHHHcCccchHH-------------HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence 666554 011122222222211 66777777777777776555566666655555433332
Q ss_pred HHHHHHH-hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 533 CDVQAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 533 ~d~~~al-~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
...+++. +++ ......+.+......|+-| ..+
T Consensus 280 ~el~~i~~~l~----------~llg~kg~~~~~~dYWd~A-------------------------------------Tl~ 312 (374)
T PF13281_consen 280 EELRKIGVKLS----------SLLGRKGSLEKMQDYWDVA-------------------------------------TLL 312 (374)
T ss_pred HHHHHHHHHHH----------HHHHhhccccccccHHHHH-------------------------------------HHH
Confidence 2222222 110 0011112222333333333 244
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 648 (714)
.+..-.|+++.|...+++++++.|..-+..-+.+.+.
T Consensus 313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 313 EASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 5556678888888888888888887766555555543
No 245
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00044 Score=73.96 Aligned_cols=120 Identities=21% Similarity=0.145 Sum_probs=100.5
Q ss_pred CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHH---HHHHHHhhhC
Q 005106 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (714)
Q Consensus 190 ~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~---~lL~aAd~~~ 266 (714)
+..|.+|+.+++++|+.|++|+..+..+..+..+++.+ .++..++.+..|.|+..-. ...+.+. .++.++.+++
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 56699999999999999999999987777777777774 8999999999999997654 3444454 8889999999
Q ss_pred hhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHh
Q 005106 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR 313 (714)
Q Consensus 267 v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~ 313 (714)
...++..|...+.+.+. ..++..++..+..+....+...|..+...
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 99999999999999985 56767777788888888888888877654
No 246
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.00 E-value=0.00059 Score=70.22 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH---HHH
Q 005106 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP---NLL 255 (714)
Q Consensus 179 ~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~---~~v 255 (714)
....||-++.....|++||++||+++|+|+.+.+++-.-......++.--|++-++|..+|.|+|||+.. +.. .|+
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg-mEd~~fqn~ 206 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG-MEDLGFQNS 206 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc-hhhcCCchH
Confidence 3345888888889999999999999999999887653211222222222269999999999999999876 322 233
Q ss_pred HHHHHHHhhhChh
Q 005106 256 LEILIFANKFCCE 268 (714)
Q Consensus 256 ~~lL~aAd~~~v~ 268 (714)
.-|-.+..-|++.
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 3344444555544
No 247
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.017 Score=59.96 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=96.7
Q ss_pred hhhHHHHHHHH--HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHh----cCC
Q 005106 376 AETDRQRLLAF--HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVIS----SVT 446 (714)
Q Consensus 376 a~~~lq~~~A~--~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~----~~p 446 (714)
....|.+.... +.+..++.-.|+|.-....+.+.|+.++ +....++|++..+.||.+.|-..|++.-+ ++.
T Consensus 168 sv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 168 SIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 34455554333 5666677788999999999999999852 22456899999999999999877773332 211
Q ss_pred CcHHHH--HHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 447 PLGWMY--QERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 447 ~~~~ay--~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
--+.+. .+.... ..+.+|...|++.++.||.++.+-+|.|.+++-+|+..+|+.....+++..|.+.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 111111 111111 2337788888888888888888888888888888888888888888888888643
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.93 E-value=0.17 Score=60.21 Aligned_cols=217 Identities=12% Similarity=-0.013 Sum_probs=133.6
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHhcCChhHHH
Q 005106 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------MYQERSLYCEGDKRW 465 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------ay~~rg~~~~~~eAl 465 (714)
..++++.|....++.++. +-.+|-..-|.++.++|+.++|...++..-...+++-. .|...+. +++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~---~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK---LDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh---hhHHH
Confidence 456777788888887776 33445556677888888888888776654445554333 3333333 38888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCC---------HHHHHHH
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALED---------YQAALCD 534 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd---------~e~Al~d 534 (714)
..|++|+.-+|+ .+-.+.+-++|.+.+.|.+--..-=+.-+.-|+. -.|..--.+...... ..-|.++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 888888888888 7777777788887777654332222222234542 222222222222222 2335667
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH--HHHHHhCCCChhHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI--YQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~--~qaL~l~P~~~~~~~~~g~ 612 (714)
+++.++.. +... ..+-..+.-.+...+..|++| +.++ ..|=.+-+.+...-+..+.
T Consensus 177 ~~~~l~~~-gk~~---s~aE~~Lyl~iL~~~~k~~ea------------------l~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 177 VQKLLEKK-GKIE---SEAEIILYLLILELQGKYQEA------------------LEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHhccC-Cccc---hHHHHHHHHHHHHhcccHHHH------------------HHHHHHHHHHhccccchHHHHHHHH
Confidence 77777777 2211 111222333445555556666 3333 4445556666777777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
.+..++++.+=.+...+++.-+|||
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc
Confidence 8888999999999999999999998
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.23 Score=49.81 Aligned_cols=82 Identities=23% Similarity=0.168 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++|...++.++..-.+. +-+-.++|-++.++|++++|+..++..- +++. -....||-++...||-++|...|.
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 66666666555433332 2345678999999999999999998876 5553 335779999999999999999999
Q ss_pred HHHhhCCCc
Q 005106 537 AILTLSPDY 545 (714)
Q Consensus 537 ~al~L~P~~ 545 (714)
++++.+++.
T Consensus 184 kAl~~~~s~ 192 (207)
T COG2976 184 KALESDASP 192 (207)
T ss_pred HHHHccCCh
Confidence 999998765
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.0021 Score=48.59 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++++..+|.++..+|++++|.+.|+++++.+|++. +++..|
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46889999999999999999999999999999998 887765
No 251
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0032 Score=67.12 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRF-CFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~-~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
--|.|||.+...+|+|..||.|..+|+.++|..-..+.|+ .++.++.++++|+..++..++++-.
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 3466777777777777777777777777777643344554 4677777777777766666655544
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.046 Score=58.59 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~--~lg~~~~~~G~~~~A~~~~~ 439 (714)
.-.+.+.++.++.-+..+.......|.-..+...+|++-+|...+++.|+--|.+-.. ---.+++..|+.+.-...++
T Consensus 82 ~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~ 161 (491)
T KOG2610|consen 82 NVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIE 161 (491)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHH
Confidence 3345556666554443332222334555667778899999999999998886766433 23347888899998888888
Q ss_pred HHHhc-CCCcHHHHHHHHh-------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 440 SVISS-VTPLGWMYQERSL-------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 440 ~aI~~-~p~~~~ay~~rg~-------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
+.|.. +++.+..-+--|. ++.+++|-..-++|+++||++..+....+-++.+.+|+.|+.+...+--..=-.
T Consensus 162 kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~ 241 (491)
T KOG2610|consen 162 KIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ 241 (491)
T ss_pred HhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh
Confidence 88887 6665433333332 355699999999999999999999999999999999999999988775422111
Q ss_pred ---HHHH--HHHHHHHHhcCCHHHHHHHHHHHH--hhCCCch
Q 005106 512 ---LECL--ELRFCFFLALEDYQAALCDVQAIL--TLSPDYR 546 (714)
Q Consensus 512 ---~~~~--~~R~~~~~~lgd~e~Al~d~~~al--~L~P~~~ 546 (714)
..++ ..-+.++.+.+.|+.|+.-|++-+ +++.++.
T Consensus 242 s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 242 SWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 1122 224678999999999999998744 4666653
No 253
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.17 Score=52.10 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHH------HHHhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQ------ERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRAS 487 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~------~rg~~-----~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~ 487 (714)
.++.+++.+|+..+.++|+++.+.|.--. ..|.+ .+.++||..|++|-+.-... -..+..-|.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 35567899999999999998765443322 33433 23378888888887654433 244566677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 488 SLMTKQNVEAALAEINRILGFKLA-------LECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~-R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.-..+++|.+||..|+++.....+ ...|+. -|.+++..+|.-.|-+.+++=.+++|.+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 777889999999999999875432 122344 356888889999999999999999999854
No 254
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.16 Score=59.95 Aligned_cols=141 Identities=12% Similarity=-0.070 Sum_probs=76.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH----------hcCCCcHHHHHHH-
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI----------SSVTPLGWMYQER- 455 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI----------~~~p~~~~ay~~r- 455 (714)
-.+...|...|.+++|.+.-+.-=++.-...|++.+.-+...||...|++.|+|+- ..+|+.-.-|.++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 34556666777777776644321111122234566666777788888888887542 2244333333333
Q ss_pred ---------Hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005106 456 ---------SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (714)
Q Consensus 456 ---------g~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (714)
|.| |..+.|+..|..|-. |+..--++.-+|+.++|-...+. ..+-.+-+..|.-|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLARMY 977 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHHHHh
Confidence 222 333666666655532 44444455555555555443332 11222234566678
Q ss_pred HhcCCHHHHHHHHHHHH
Q 005106 523 LALEDYQAALCDVQAIL 539 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al 539 (714)
...|++.+|+.-|.+|-
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888888777643
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.036 Score=52.60 Aligned_cols=100 Identities=19% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p--------~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
....|+...++..+.+++.++. ...|+...|..+ .+. ...+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l---~~~-------------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL---REL-------------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH---HHH-------------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHhccCHH
Confidence 3445566666666666666542 234444444332 111 1245567788888999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+|+..+++++.++|- -..+...-.+|..+|+..+|++.|++..+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999995 55566667789999999999998888643
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.073 Score=58.74 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=108.6
Q ss_pred CchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHh---ccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQ-RLLAFHQLGCVRLL---RKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLW 433 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq-~~~A~~~lG~~~~~---~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~ 433 (714)
..+.++.|.+.+...+..... ....-++.+.++-. .|+.++|+..+.+++... ..+.+--+|++|-..
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~----- 230 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL----- 230 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-----
Confidence 455667777775555422111 12223455555555 799999999999977662 344556678877632
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-hc----
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL-GF---- 508 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL-~l---- 508 (714)
.++........ .++|+..|.|+.+++| +.++-.|.+.++.-.|...+.-.+.+++. .+
T Consensus 231 -------~~~s~~~d~~~---------ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 231 -------FLESNFTDRES---------LDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred -------HHHcCccchHH---------HHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 11111111111 3899999999999996 56788999999999998777766666554 11
Q ss_pred ------CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 509 ------KLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 509 ------~P~~~~~~~--R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.+..+.|.. ++.+..-.||+++|++.+++++++.|..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 122344432 5567888999999999999999999875
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.043 Score=52.00 Aligned_cols=61 Identities=26% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+...++..+...|++++|++.+++++.++|.+-.++..+-.++..+|+..+|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455777888999999999999999999999999999999999999999999999998743
No 258
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.61 E-value=0.003 Score=44.48 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++++.+|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445555555555555555555555555544
No 259
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.59 E-value=0.066 Score=49.40 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHH--HHHHHhccchHHHHHHHHHHHhcc----------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 005106 383 LLAFHQL--GCVRLLRKEYDEAEHLFEAAVNAG----------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT 446 (714)
Q Consensus 383 ~~A~~~l--G~~~~~~g~y~eA~~~f~~AL~~~----------~----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p 446 (714)
+.+|..| |.-.++-|.|++|...+.+|.+.. | +..+.+|+.++..+|+|++++..-.+++.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~--- 83 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR--- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---
Confidence 3444444 444566789999999999998761 1 23477899999999999999877665443
Q ss_pred CcHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 447 PLGWMYQE-RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 447 ~~~~ay~~-rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
|+| ||.+.+-+..+. ..+.++||.++..+|+.+||+..|+++-+.
T Consensus 84 -----YFNRRGEL~qdeGklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 84 -----YFNRRGELHQDEGKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -----HHHHH--TTSTHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -----HHhhccccccccchhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 354433333331 235678999999999999999999998763
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.53 E-value=0.004 Score=43.77 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3679999999999999999999999999999964
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.46 E-value=0.2 Score=53.21 Aligned_cols=158 Identities=13% Similarity=-0.036 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhc----cchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcH-HHHHH
Q 005106 384 LAFHQLGCVRLLR----KEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLG-WMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~----g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~aI~~~p~~~-~ay~~ 454 (714)
.+...+|..+..- ++..+|..+|.++.+.++..+.+.+|.++.. ..+..+|..+|++|.......+ .+.+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~ 153 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYR 153 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 3455566655543 4688999999999999999999999998876 4589999999999999855443 22222
Q ss_pred HHh-----------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 455 RSL-----------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRF 519 (714)
Q Consensus 455 rg~-----------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~ 519 (714)
.|. ......|+..|.+|-++. +..+..++|..|.. ..++.+|+.-|.+|-+... ....++.+
T Consensus 154 l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 154 LGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred HHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 221 112247888999988888 88999999988865 3578999999999998877 66566666
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 005106 520 CFFLALE---------------DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 520 ~~~~~lg---------------d~e~Al~d~~~al~L~P~~ 545 (714)
++...| +...|...++++-...+..
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 444444 8889999999988888775
No 262
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.42 E-value=0.4 Score=59.69 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHHhccchhhHhhHH--HHHHHhCCHHHHHHHHHHHHhc-CC-------CcHHHHHHHHh-cCChhHHHHH
Q 005106 399 YDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKGHKLWAYEKLNSVISS-VT-------PLGWMYQERSL-YCEGDKRWED 467 (714)
Q Consensus 399 y~eA~~~f~~AL~~~~~~a~~~lg--~~~~~~G~~~~A~~~~~~aI~~-~p-------~~~~ay~~rg~-~~~~~eAl~d 467 (714)
-.+-.++|++-+.-.|..+..++- .-+.++++.++|.+...+|+.- ++ |.-.||.|.-+ |+..+.-.+-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334567888888877777644433 3467789999999999999873 44 45567777754 4444555678
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|++|-..+-- .-.|..+.-+|..-+++++|.+.++..++ +.-....|...+.++....+-++|-.-..+|++--|..
T Consensus 1520 FeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~- 1597 (1710)
T KOG1070|consen 1520 FERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ- 1597 (1710)
T ss_pred HHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-
Confidence 9999887643 34788899999999999999999999997 44347788888889999999999999999999999983
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (714)
.+++...+.. ++-.+.....+ .-..|+--|.-.|.-.++|.-....-.+.|..+-+...
T Consensus 1598 ----------------eHv~~IskfA---qLEFk~GDaeR--GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1598 ----------------EHVEFISKFA---QLEFKYGDAER--GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred ----------------hhHHHHHHHH---HHHhhcCCchh--hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 3455555553 44444333333 46789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChh-HHHHHHHHHHhcCCHH
Q 005106 627 LQLARQHAASDHE-RLVYEGWILYDTSHCE 655 (714)
Q Consensus 627 ~~~Al~l~P~~~e-a~~~~G~~ly~~G~~e 655 (714)
|+|++.+.=.=.. -.++.=|+-|...+=+
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999988644333 3455566666654333
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.39 E-value=0.52 Score=50.92 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=108.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MF 548 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~-~~ 548 (714)
.......|...+.+....|+++-|...+.++..+++ .+......+.++-..|+-.+|+...+..+.-.+... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 777788999999999999999999999999998763 244445677888899999999999999888322210 00
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee 622 (714)
........ +.+. . ++. ...-..--......+.++..+|.-...+ +..++
T Consensus 222 ~~~~~~~~--~~~~----~----------~~~---------~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 ISNAELKS--GLLE----S----------LEV---------ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred ccHHHHhh--cccc----c----------ccc---------ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00000000 0000 0 000 0000000001111235566677777777 88888
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHC-----------------EEGLRKAEESIQMKRS 670 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~-----------------eeAl~~ye~Ai~i~~~ 670 (714)
++..|+.|+.++|+...+++..|..+...-.. ..|+..|=+|+.+.+.
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999998888888888776655222 2366666666666555
No 264
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.33 E-value=0.94 Score=48.00 Aligned_cols=206 Identities=12% Similarity=0.007 Sum_probs=125.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d 467 (714)
..+......+.+..|...|.++-..+...+...+|..+..-... .....+|+..
T Consensus 46 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv--------------------------~~~~~~A~~~ 99 (292)
T COG0790 46 LNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGV--------------------------SRDKTKAADW 99 (292)
T ss_pred cccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCc--------------------------cccHHHHHHH
Confidence 34455566778888888888876654444444444443321111 1112555555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 468 LDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-AL-ECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P-~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
|. ...+..++.+.+++|..|.. ..++.+|..-|++|.+..- .. ...+..+..|..-+ .+ ...
T Consensus 100 ~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~---------~~~ 167 (292)
T COG0790 100 YR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA---------LAV 167 (292)
T ss_pred HH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh---------hcc
Confidence 55 33445666777777777776 4477888888888886632 21 22333444333221 00 000
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----c
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----L 617 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----l 617 (714)
+.+ ... |+..+.+|-+.. ++.+.++.|.++.. -
T Consensus 168 ~~~-----------------------~~~------------------A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 168 AYD-----------------------DKK------------------ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cHH-----------------------HHh------------------HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 000 001 234455555544 77788888877755 3
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---------------HCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G---------------~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
.++++|..+|++|-+... ..+.++.| ++|..| +...|...+.++....+...-.-++
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 477899999999999997 89999999 888877 7788888888888776666544444
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.5 Score=48.97 Aligned_cols=161 Identities=14% Similarity=-0.007 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhhhhhHHHH
Q 005106 485 RASSLMTKQNVEAALAEINRILGFK-----LALE-CLELRFCFFLALEDYQAALCDVQAILTLSPDY---RMFEGRVAAS 555 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l~-----P~~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~---~~~~~~~~a~ 555 (714)
-|..+.++..+.|+...|+||..+. |++. ...-++.=..+.-+.++|++-|++++.+=-+. .|++. ..
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---l~ 153 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---LY 153 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---HH
Confidence 3445566666666666666666652 3321 12234444556667788888888877643222 12111 11
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-- 633 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-- 633 (714)
...+.+.-.++.+++|.. .+.+ .-....-+..-|..-.++...-++++-.+++..|..+|+..-.+
T Consensus 154 gk~sr~lVrl~kf~Eaa~---a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAAT---AFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred HHhhhHhhhhHHhhHHHH---HHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 222223333444444421 0001 11222333333444455555555555566889999999885543
Q ss_pred --CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 634 --AASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 634 --~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.|.+..++-++ .--|+.|+.|+.-...
T Consensus 222 f~~sed~r~lenL-L~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENL-LTAYDEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHH-HHHhccCCHHHHHHHH
Confidence 34444444443 3357888888765443
No 266
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.28 E-value=0.3 Score=56.88 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHcCChHHHHHH------HHHHHH-----hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 614 LLRLNCPEAAMRS------LQLARQ-----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 614 L~~lg~~eeAl~~------~~~Al~-----l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|-+.|-.++|+.. ++-|.. ..-..++.|..++.-|-+.|+|++|-..|-+||+++-
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 4446666666542 222322 2345788999999999999999999999999999873
No 267
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.36 Score=53.30 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCchhh-hhhHHHHHHHHHHHHhhhhhhH
Q 005106 495 VEAALAEINRILGFKLA-LECLELRFCFFLALE--DYQAALCDVQAILTLSPDYRMF-EGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~e~Al~d~~~al~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.++-+....-+|..+|+ +.+|+.|.|++...+ ++..=++-+++++++||.+-.. .=|.-..... +.
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~----------~~ 160 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA----------ER 160 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH----------hc
Confidence 44555555556666664 556666666655544 3566666666666666655221 1011111100 00
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH------cCC------hHHHHHHHHHHHHhCCCCh
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~------~eeAl~~~~~Al~l~P~~~ 638 (714)
. ..+..+-+...+.+|..++.|-.+|++|..+|-. -|. ...-+.....|+--+|+|.
T Consensus 161 ~-----------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 161 S-----------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred c-----------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 0 0011123667899999999999999999999884 231 2345677889999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCHH--HHHHHHHHhhccCCCCCchh
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEES----IQMKRSFE--AFFLKAYALADSSQDSSCSS 692 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~A----i~i~~~~~--a~~~~~~~~~~~~~~~~~~~ 692 (714)
.+++|.=|.+-..-+.+ .|..+ +++.=++. -++-....+.-+.++.|...
T Consensus 230 S~WfY~rWLl~~~~~~~----~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~ 285 (421)
T KOG0529|consen 230 SCWFYHRWLLGRGMRRE----CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET 285 (421)
T ss_pred ceeeehHHhhccccccc----ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence 99999888887754444 33333 33332222 44444555554445555544
No 268
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.14 Score=53.44 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHhc-CC
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSLY-CE 460 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~rg~~-~~ 460 (714)
-.-|.++..-|++++|.+...+- ..-.+...--.+..+..+.+-|.....+...++-+ ++.+|.+...- ..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 34477888899999998877652 22233333345678888889998888888887643 78888887432 23
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC-DVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~-d~~~a 538 (714)
..+|.-.|+.--+--|-.+...+..+.+.+.+||++||...+..||.-+++ ++.+.|.-.+-..+|.-.++.. ...+.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 488988999999877777889999999999999999999999999999996 8988888776667776666655 45667
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
...+|.++
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 77888874
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.08 E-value=0.0078 Score=39.79 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776665
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.02 E-value=0.11 Score=58.54 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHH-HH----H
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFE-AF----F 675 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~-a~----~ 675 (714)
..+..++|.++.++|+.+||++.++..++.+|. +-.++.|+-.+|+.+++|.++-+...|==.+ -|..+ -. .
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345667888999999999999999999998875 5669999999999999999997776664334 34445 33 3
Q ss_pred HHHHHhhcc
Q 005106 676 LKAYALADS 684 (714)
Q Consensus 676 ~~~~~~~~~ 684 (714)
||+-+.+|+
T Consensus 339 LkaRav~d~ 347 (539)
T PF04184_consen 339 LKARAVGDK 347 (539)
T ss_pred HHHHhhccc
Confidence 555566675
No 271
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.01 E-value=0.0074 Score=64.50 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=74.9
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhChhh
Q 005106 191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (714)
Q Consensus 191 ~~f~aHr~VLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~aAd~~~v~~ 269 (714)
+.|.|.+..|-..=.||+..+.....++ ..+.|+|+- .-+..+|+=|++|+....-. +++.||..||.-+++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996522222 224566653 36889999999999997766 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 005106 270 LKDACDRKLASLV 282 (714)
Q Consensus 270 L~~~C~~~L~~~l 282 (714)
|++.|-.|+...+
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999987665
No 272
>PRK10941 hypothetical protein; Provisional
Probab=96.01 E-value=0.046 Score=57.92 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
-..|+=.+|++.++++.|+...++.+.++|+ +.-+.-||.+|.++|.+..|+.|++.-++..|+.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4567778899999999999999999999996 777778999999999999999999999999999843
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.46 Score=56.24 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
||.+-.++.-+|+.++|-++ .-...|--|-|.+|--+-..|++.+|+..|.||-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~i-----A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARI-----AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHH-----HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44444444455555555433 33455667888999999999999999998888754
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.98 E-value=1.3 Score=47.80 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHh
Q 005106 638 HERLVYEGWILYDT------SHCEEGLRKAEESIQMKRSFE-AFFLKAYAL 681 (714)
Q Consensus 638 ~ea~~~~G~~ly~~------G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~ 681 (714)
+.++.-+|.....+ +.+++++..|.+|++++|+.+ +|+.-|...
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 45666777777777 999999999999999999888 887766544
No 275
>PRK10941 hypothetical protein; Provisional
Probab=95.97 E-value=0.039 Score=58.47 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
|+.+.+++|.++|.++.-+--||.++.++||+..|..+++.-++..|+++.+..-+-.+
T Consensus 200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 38889999999999998888899999999999999999999999999988876655444
No 276
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.91 E-value=0.17 Score=57.94 Aligned_cols=116 Identities=15% Similarity=0.002 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHH
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~----~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
++...|.+.+......+|+.+..+..+|++ ++.++|++.|++|++..... ...+..+|..++-++++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666667777766666666553 34477777777776544333 3456778999999999999999
Q ss_pred HHHHHHhcCCCHH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC
Q 005106 501 EINRILGFKLALE--CLELRFCFFLALEDY-------QAALCDVQAILTLSPD 544 (714)
Q Consensus 501 ~~~kAL~l~P~~~--~~~~R~~~~~~lgd~-------e~Al~d~~~al~L~P~ 544 (714)
.|.+.++.+.-.. ..+..|.++..+|+. ++|...|.++..+-..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999998776433 335578899999999 8888888888776553
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.91 E-value=0.036 Score=43.98 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
++++..+..+.++|+|++|.+..+++++++|+|. .+..+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHH
Confidence 4678889999999999999999999999999983 355555444433
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.18 Score=53.56 Aligned_cols=123 Identities=18% Similarity=0.043 Sum_probs=89.7
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHH-
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR- 464 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eA- 464 (714)
.-+.-..+.|++.+|...|..|+... ...+..++++++...|+.+.|...+.. +...-.......-+..+.....|
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~-lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA-LPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh-CcccchhhHHHHHHHHHHHHHHHh
Confidence 44556678899999999999999884 455778899999999999998776653 22211111111111111111222
Q ss_pred ----HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 465 ----WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 465 ----l~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
+.++.+.+.-||++..+-+.+|..+...||+++|++.+=..+.-+-+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999999888877654
No 279
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.86 E-value=0.034 Score=50.18 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=60.6
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHHHhhccCCCC-------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN------------- 248 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~------------- 248 (714)
|+|+- +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.++ +|+..+|+.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56655 788999999966 68999999997643222 22578888 59999999999999854211
Q ss_pred -----CCCHHHHHHHHHHHhhhCh
Q 005106 249 -----GVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 249 -----~i~~~~v~~lL~aAd~~~v 267 (714)
.++.+.+.+|+.||+++++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0445678899999998865
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.80 E-value=0.73 Score=52.89 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.|.+.++...+.-|+.+......|-++...|+.++|+..|++++.-... .-+++-++|++.-++||++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 55666667777777777777777777777777777777777777743332 1223446677777777777777666
Q ss_pred HHHhhC
Q 005106 537 AILTLS 542 (714)
Q Consensus 537 ~al~L~ 542 (714)
+..+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 666644
No 281
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.79 E-value=0.011 Score=40.91 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|++++|++++.+|++++|+..|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57888888888888888888888888887775
No 282
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.65 E-value=0.22 Score=46.06 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF-------KLA-LECL----ELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-------~P~-~~~~----~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+..|..++.++..+|+|+|++...++||.+ +-+ -..| ++|+.++..+|+.++|+..|+.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 467788999999999999999988888864 343 2223 56889999999999999999998763
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.64 E-value=3.7 Score=43.61 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+-.+|+.|...|..++|++|...|+-|+
T Consensus 246 ~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 246 HTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4568999999999999999999999765
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.49 E-value=0.021 Score=37.59 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+++|.++..+|++++|...++++++++|++
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3578999999999999999999999999999864
No 285
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=95.43 E-value=0.14 Score=54.97 Aligned_cols=191 Identities=16% Similarity=0.100 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+|||..=.-...|-|+.++++.-.+..+...-|...=+..=-..|-+.-+-....+|+. .++++.-+++|...
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence 88888777788999999999988888877555433211111111111111112334444 35666677777665
Q ss_pred C-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 542 S-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 542 ~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
. |.- ++++..+.. ||...- ...-.|-..+.-+.++|+.-..++..-.|++.++.+.-=+
T Consensus 286 ~~pGP---------YqlqAAIaa---------~HA~a~--~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 286 RRPGP---------YQLQAAIAA---------LHARAR--RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred CCCCh---------HHHHHHHHH---------HHHhhc--ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 4 332 122211111 111110 0011222245556667777666788888999999999999
Q ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 621 EAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 621 eeAl~~~~~Al~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
+.++...+...+- -.+++..|-.+|-.|-++|+.+||-..|++||++-++-. .=|++..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999887776 567888999999999999999999999999999988876 5555544
No 286
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=5.8 Score=45.00 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=121.1
Q ss_pred hccchHHHHHHHHHHHhc----cchh------h------HhhHHHHHHHhCCHHHHHHHHHHHHhc---CCC-------c
Q 005106 395 LRKEYDEAEHLFEAAVNA----GHIY------S------IAGLARLGYIKGHKLWAYEKLNSVISS---VTP-------L 448 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~----~~~~------a------~~~lg~~~~~~G~~~~A~~~~~~aI~~---~p~-------~ 448 (714)
..|-|++|+++=++||.. +..+ . +-.+.-+..-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888888765 1111 1 123444666789999998776655543 222 3
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC------H--
Q 005106 449 GWMYQERSLYC----EGDKRWEDLDKATALDPT---LSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA------L-- 512 (714)
Q Consensus 449 ~~ay~~rg~~~----~~~eAl~d~~kAi~LdP~---~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~------~-- 512 (714)
+..++-+|.|+ .+++|-..|..|+.+--. -+..-.|+|.+|.+.|+- +++-++++ +.|. .
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCcchHHH
Confidence 45556667764 348888888777765432 245556688888876653 23444443 2332 1
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 513 ---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 513 ---~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
..++.+|.+...++++.||.+-.+..++.. +.+-..|..+.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~---------------------------------- 486 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC---------------------------------- 486 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH----------------------------------
Confidence 124556777777888888888888877776 32222222111
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
...-+|.+.+-+|+..|++...+-|+.+...-+|..+.
T Consensus 487 ----------------~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 487 ----------------SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred ----------------HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 23346778888899999999999999988777766544
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.16 Score=54.57 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHH-HHH---HHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLALECLE-LRF---CFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-~P~~~~~~-~R~---~~~~~lgd~e~Al~d~~ 536 (714)
-+|-...+|.+.--|++--++..--.++.-.|+...-...++|+|-. +|+..++. ..| ..+.+.|=|++|..
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk--- 196 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK--- 196 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH---
Confidence 55656666666666666666666666666666666666666666655 55533332 222 23445554444444
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
.-++|++++|.+..+...++.+|..
T Consensus 197 -------------------------------------------------------~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 197 -------------------------------------------------------QADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred -------------------------------------------------------HHHhhccCCCcchHHHHHHHHHHHh
Confidence 2466677777777899999999999
Q ss_pred cCChHHHHHHHHHHHHh--CCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 617 LNCPEAAMRSLQLARQH--AASDHER--LVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l--~P~~~ea--~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.||++|+.+-..+-=.. +..---. ++.-+..+...++|+.|+..|++-|-
T Consensus 222 ~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 222 NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 99999999887653211 2222222 33444555666999999999999874
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.27 E-value=0.026 Score=40.67 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 640 RLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 640 a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++.++|.++..+|++++|+..|++|+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999977653
No 289
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.17 E-value=0.091 Score=47.97 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=48.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHhcCC---------------hhHHHHHHHHHHhcCCCChHHHH
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG---WMYQERSLYCE---------------GDKRWEDLDKATALDPTLSYPYM 483 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~---~ay~~rg~~~~---------------~~eAl~d~~kAi~LdP~~~~ay~ 483 (714)
+.-++.+|++.+|++.++..|..+++.. ..+..+|..+. .-.+++.|.+++.|.|+.+...+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 3445555666666666666666555433 22223332210 04566677777777777766666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 484 YRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.+|.=+---.-|++++...+++|.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666555555566666666666654
No 290
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.09 E-value=0.063 Score=54.26 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=76.9
Q ss_pred ccEEEEEcCeEEEeehhhhhcCCH--HHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHH
Q 005106 182 RNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (714)
Q Consensus 182 ~DV~l~v~~~~f~aHr~VLAa~S~--yF~amF~~~---~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~ 256 (714)
+=|.+.+||+.|-.-+--|.-+-| -.-+||.+. -+|+.+.-+-|. -+|.-|+.+|+|+..|.+...+.-++.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccHH
Confidence 458899999999888877777765 678899873 245566667776 799999999999999999866777899
Q ss_pred HHHHHHhhhChhhHHHHHHH
Q 005106 257 EILIFANKFCCERLKDACDR 276 (714)
Q Consensus 257 ~lL~aAd~~~v~~L~~~C~~ 276 (714)
.+|+.|++|++-.|++.-+.
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 99999999999999987776
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.07 E-value=0.13 Score=45.33 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLEL-RFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~-R~~~~~~lgd~e~Al~d~~~al 539 (714)
..++.++++++.+|++..+.+.+|..++..|++++|++.+-.+++-++++ +.... .-.++..+|.-+.....|++-+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998864 32222 2346667776666666665543
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=1.1 Score=45.14 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=42.4
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHH--HHHHHHHH
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECL--ELRFCFFL 523 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~--~~R~~~~~ 523 (714)
.||-|.+.-......+|-..|.+++..- ..+.. +.+....+-+.-+|. +..+ .-.+-.+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 3555555544434456666666666421 12222 444555555554543 2222 12445677
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 005106 524 ALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~ 542 (714)
+.|++++|+.-++.++..-
T Consensus 101 e~~~~d~A~aqL~~~l~~t 119 (207)
T COG2976 101 EANNLDKAEAQLKQALAQT 119 (207)
T ss_pred hhccHHHHHHHHHHHHccc
Confidence 7788888888777777543
No 293
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=11 Score=46.40 Aligned_cols=188 Identities=13% Similarity=-0.003 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhh-HH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGR-VA 553 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~--P~~~~~~~~-~~ 553 (714)
+-+..|..+|.+..+.|+..+||..|=||= +|+ .|..--.+-...|.|++-++...-|-+-- |.-...... -+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 346788999999999999999999998865 553 33444455677888999888888776632 321100000 00
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
-...++.++....-.+-|+ .-+.+|+.-+-+-++|...+.-. ..-|-.++..|..+|.++.|....|+|-..
T Consensus 1178 kt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 0111222333333333343 23455554444545444444433 344888999999999999999999887443
Q ss_pred CC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 634 AA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 634 ~P-------------------------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~ 676 (714)
.. -.++-+--+-..+.+-|.|+|-+...|-++.+.|---.+|-
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 22 12333333444456679999999999999999988775554
No 294
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.04 E-value=0.064 Score=59.07 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=70.3
Q ss_pred EEEEEcCeEEEeehhhhhcCC--HHHHHhhcCCCCcCCcce--EEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S--~yF~amF~~~~~Es~~~~--I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL 259 (714)
|.|.|||+.|.-.+.-|+... .+|-++|++.+.-.+... |-|. =+|+.|..+|+|+.||.++ ++.-....++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 789999999999999997776 599999987764333333 5555 6899999999999999999 7554444444
Q ss_pred H-HHhhhChhhHHH---HHHHH
Q 005106 260 I-FANKFCCERLKD---ACDRK 277 (714)
Q Consensus 260 ~-aAd~~~v~~L~~---~C~~~ 277 (714)
. =|.+|+++.+.+ .|+.-
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 4 899999999886 45443
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.03 E-value=9 Score=45.47 Aligned_cols=178 Identities=11% Similarity=-0.022 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-hCCC
Q 005106 478 LSYPYMYRASSLMTKQNVEAALAEIN--------RILGFKLALECL----ELRFCFFLALEDYQAALCDVQAILT-LSPD 544 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~~eAl~~~~--------kAL~l~P~~~~~----~~R~~~~~~lgd~e~Al~d~~~al~-L~P~ 544 (714)
.+..++-.|..++..|+.+.|+..|. .+....+..+.+ .|+.+++...+.-..-..+.+.+++ ++|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 46778889999999999999999998 555555544432 4566777766654444435666666 6664
Q ss_pred ch---hhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 545 YR---MFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 545 ~~---~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
.. ..+.+.+.......+...... ..++.- .+-+ ++..+.+++...---.-+.+-.|..+. .|..
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~--~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR--HLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHHH--HHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 21 122233222222111111100 111110 0001 122222233333333344566666666 7888
Q ss_pred HHHHHHHHHHHHhCCCC---hhHHH---HHHHH---HHhcCCHHHHHHHHHHHHhc
Q 005106 621 EAAMRSLQLARQHAASD---HERLV---YEGWI---LYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~---~ea~~---~~G~~---ly~~G~~eeAl~~ye~Ai~i 667 (714)
+|......+|+...+.. ...+| +.|.+ +-..|+.++|-...++...+
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 88888888888776665 88888 44443 45679999998888776543
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.92 E-value=0.087 Score=59.38 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l---~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
..|+.+|.+|+.--|.....|.||+.+++.. |..-.|+.|.-.|+++||. ..+++.++.++.+++++.+|+.+-.+
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 4455555555555555555555555555543 2333455555555555554 33344444455555555555555555
Q ss_pred HHhhCCC
Q 005106 538 ILTLSPD 544 (714)
Q Consensus 538 al~L~P~ 544 (714)
+....|.
T Consensus 471 lq~~~Pt 477 (758)
T KOG1310|consen 471 LQMSFPT 477 (758)
T ss_pred HhhcCch
Confidence 5555553
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.90 E-value=0.21 Score=44.05 Aligned_cols=76 Identities=9% Similarity=-0.074 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++-++++++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=-++--+|.-+.-...|+|-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 667888999999999999999999999999999999999999998876 4454455555666677676777777654
No 298
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.87 E-value=0.39 Score=51.24 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly~~--G~~eeAl~~ye~Ai 665 (714)
|..+|++++...|.++++|.....-|..+|+.+.|...|++++..-|... -...+.-|+-|.. |+.+.....++|+.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888999999999999999999999999999999999988877 5566677776654 99999999999999
Q ss_pred hcCCCHH
Q 005106 666 QMKRSFE 672 (714)
Q Consensus 666 ~i~~~~~ 672 (714)
++-|+..
T Consensus 135 ~~~~~~~ 141 (280)
T PF05843_consen 135 ELFPEDN 141 (280)
T ss_dssp HHTTTS-
T ss_pred HHhhhhh
Confidence 9987744
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.82 E-value=9.4 Score=46.24 Aligned_cols=204 Identities=12% Similarity=-0.013 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------HH
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA------LE 513 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~---------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------~~ 513 (714)
+|..+-...+ .+|-...+++-.--|. .+..-.-+|.+....|++++|++..++++..=|. ..
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 4444444444 6666666655554444 2455566999999999999999999999987663 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
++.+.+.+..-.|++++|....+.+.++.-.|-.++--+-+......+.....+...++.. ... --..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~---~~~---------~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE---KAF---------NLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHH---------HHHH
Confidence 3455778899999999999999999998766544333344444444455555533333210 000 2246
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChhH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHER-LVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~ea-~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.|-+...|.+.-+.--++.++..-.|.+++..-.+..+++--. ...+ +..++.+.+..|++|+|....++.-.
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777777887777666666666666688888888877766432 2222 34788889999999999998888777
Q ss_pred c
Q 005106 667 M 667 (714)
Q Consensus 667 i 667 (714)
+
T Consensus 647 l 647 (894)
T COG2909 647 L 647 (894)
T ss_pred H
Confidence 5
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.9 Score=47.17 Aligned_cols=134 Identities=14% Similarity=-0.011 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTPLGWMYQERS 456 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~----~p~~~~ay~~rg 456 (714)
.-+-++.+.|...-....+.|+..+|++|..+ |...|..+.|--.+.+|-.. +|+.+--+++|
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~l------------Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqr- 135 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASEL------------YVECGSPDTAAMALEKAAKALENVKPDDALQLYQR- 135 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHH-
Confidence 33455666777777777888888888887665 44445555544444433332 34333333333
Q ss_pred hcCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CH-HHHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL------AL-ECLELRFCFFL 523 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P------~~-~~~~~R~~~~~ 523 (714)
++++=-.. .+-|...+.+|.+++++.||-..|.|-..+.- +. ..+...-.+|+
T Consensus 136 --------------alavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 136 --------------ALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred --------------HHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 33221111 23456678899999999999888877654432 21 12233445788
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 005106 524 ALEDYQAALCDVQAILTL 541 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L 541 (714)
...||..|..+|+..-++
T Consensus 202 ~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hHHHHHHHHHHhcchhcC
Confidence 888999999999986665
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.77 E-value=0.031 Score=40.31 Aligned_cols=33 Identities=12% Similarity=-0.058 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+|.++|.++.++|++++|+..|++|+.+.++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999776654443
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.75 E-value=0.091 Score=47.98 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=74.0
Q ss_pred ccccchHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 584 VDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~~---~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
-+-+.||.+++..+...+++. ..+.-+|.+..++.. .-.|+++|+++..+.|+.+..++.+|.-+-
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG 89 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence 345557999999999999988 678889999977432 347999999999999999999999999888
Q ss_pred hcCCHHHHHHHHHHHHhc-CC
Q 005106 650 DTSHCEEGLRKAEESIQM-KR 669 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i-~~ 669 (714)
-.-.|++++...+|++++ +|
T Consensus 90 s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 90 SVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred hHHHHHHHHHHHHHHhcccCC
Confidence 888899999999999997 44
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.53 E-value=0.085 Score=55.96 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=62.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
+.+.-..+.|+.|.|+..+.-|+.++|++++++.-.|...---.+.-+|-+.|-||+.|.|+.. |--||+-+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444457889999999999999999999999999999999999999999999999999999887 77777654
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.51 E-value=0.059 Score=37.17 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
++++++|.++.++|++++|++.+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999985
No 305
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.46 E-value=1.3 Score=48.30 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
.+.+....+...|..|-|+..++..++++=
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 355666677778899999999998888874
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.40 E-value=14 Score=44.75 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=151.3
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHh-hh-----hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------h
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLES-AE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------Y 416 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~-a~-----~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~ 416 (714)
+-.|.... ..|-..+..++.++-+. .. .....+...-..|.+...+|+.++|++.-+.|+..=+. -
T Consensus 420 l~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 420 LQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 33444433 24666666677664432 21 12222344456899999999999999999999987222 2
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHH-------HHHhc--CChhHHHH-HHHHHHhcCCCChH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT------PLGWMYQ-------ERSLY--CEGDKRWE-DLDKATALDPTLSY 480 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p------~~~~ay~-------~rg~~--~~~~eAl~-d~~kAi~LdP~~~~ 480 (714)
+....|.+..-+|++++|...+..+-+... -..|+.. ++|.. ...+.+.. -+.+-+.-.|-..+
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 345578899999999999988887777622 1233333 33421 01122221 24455666788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhhhh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFK----LAL--ECL--ELRFCFFLALEDYQAALCDVQAILTL--SPDYRMFEG 550 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~----P~~--~~~--~~R~~~~~~lgd~e~Al~d~~~al~L--~P~~~~~~~ 550 (714)
+..-|+.++..--|+++|..+..+.+++- |.+ .++ ...+.+....||+++|..-.+....+ +++ ...+-
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~ 657 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDY 657 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchH
Confidence 88999999999889999999999999873 322 222 25677899999999999999887664 444 33334
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
..++....-.+-....+.+.+.+|..-...
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 455666666666777788888777555443
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.35 E-value=15 Score=43.70 Aligned_cols=304 Identities=18% Similarity=0.119 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHhcc--chh------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 005106 377 ETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAG--HIY------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~-~~g~y~eA~~~f~~AL~~~--~~~------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~ 447 (714)
....+++.....+|.+++ ...++++|+.+.+|++.+. +.. +..-+++++.+.|... |....+++|+...+
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 444567888899999988 7899999999999998873 211 2345688999999888 99999999997543
Q ss_pred ---cHHHHHHHH----h---cCChhHHHHHHHHHHhcC--CCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhc---
Q 005106 448 ---LGWMYQERS----L---YCEGDKRWEDLDKATALD--PTLSYPYM----YRASSLMTKQNVEAALAEINRILGF--- 508 (714)
Q Consensus 448 ---~~~ay~~rg----~---~~~~~eAl~d~~kAi~Ld--P~~~~ay~----~rg~~l~~l~r~~eAl~~~~kAL~l--- 508 (714)
.+|.|.-|= . .++...|++.+++...+. +.+...+. ..|.+....+..++++...++++..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 566664441 1 146688898888888877 45544333 3678888889899999999988442
Q ss_pred ---CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHHH---HHh---hCC-------C-----------------chh-
Q 005106 509 ---KLA-----LECLEL--RFCFFLALEDYQAALCDVQA---ILT---LSP-------D-----------------YRM- 547 (714)
Q Consensus 509 ---~P~-----~~~~~~--R~~~~~~lgd~e~Al~d~~~---al~---L~P-------~-----------------~~~- 547 (714)
+|+ ...+.. .-.++...|+++.+....++ .+. -.| + ...
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 232 233322 33567888887666554332 222 222 1 000
Q ss_pred -hhhhHHHHHH---HHH--------HHHhhhhhhHHHHHHhhhhccc-cccccchHHHHHHHHHhCCC----ChhHHHHH
Q 005106 548 -FEGRVAASQL---HML--------VREHIDNWTIADCWLQLYDRWS-SVDDIGSLSVIYQMLESDAP----KGVLYFRQ 610 (714)
Q Consensus 548 -~~~~~~a~~~---~~~--------l~~~~~~~~~A~~~~~l~~~~~-~~~d~~al~~~~qaL~l~P~----~~~~~~~~ 610 (714)
+.+......+ ... .....+.++++- +.-+.+. ..+... -..+..+.+..++ .-...+.+
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l---~~i~~~~~~~~~~~-~~sl~~~~~~~~~~~~l~~~~~~y~ 367 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL---KQIEKLKIKSPSAP-SESLSEASERIQWLRYLQCYLLFYQ 367 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH---HHHHHhhccCCCCC-CcCHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111111111 111 112233333331 1222211 000000 0011111111111 12345677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAA---------SDHERLVYEGWILYDTSHCEEGLRKAE--------ESIQMKRSFEA 673 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P---------~~~ea~~~~G~~ly~~G~~eeAl~~ye--------~Ai~i~~~~~a 673 (714)
+.+..-+|++..|......+..... -.+..++-.|...-..|+.+.|...|. .+....+..|-
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 7777889999889988887776532 257889999999999999999999997 66677777772
Q ss_pred H----HHHHHHhhccC
Q 005106 674 F----FLKAYALADSS 685 (714)
Q Consensus 674 ~----~~~~~~~~~~~ 685 (714)
+ .|..+.+-+.+
T Consensus 448 ~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 448 YILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHHHHhHhhc
Confidence 2 34555554433
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.31 E-value=0.066 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+.++.++|.++..+|++++|...+++|+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35789999999999999999999999998754
No 309
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.30 E-value=0.12 Score=58.21 Aligned_cols=89 Identities=12% Similarity=-0.078 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++..|.+++..-|....++-|++.++.+ -|..-.|+++.-.|++++|...-||+++.-+|..++++.||++....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 3778999999999999999999999988 6777889999999999999999999999999999999999999888888
Q ss_pred hcCCCHHHHHHH
Q 005106 666 QMKRSFEAFFLK 677 (714)
Q Consensus 666 ~i~~~~~a~~~~ 677 (714)
-..|+..|--++
T Consensus 473 ~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 473 MSFPTDVARQNF 484 (758)
T ss_pred hcCchhhhhhhh
Confidence 788855544433
No 310
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.20 E-value=0.97 Score=50.92 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH---------hC---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ---------HA---------ASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~---------l~---------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
-.+|+|+|-+.+++|++..+...|.+|++ +. ...-+.+||.|..++..|+--+|.+.+-+|.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 34689999999999999999999999997 12 2467999999999999999999999999999
Q ss_pred hcCCCHH-HHH---------HHHHHhhccCCCCCchhhHH
Q 005106 666 QMKRSFE-AFF---------LKAYALADSSQDSSCSSTVV 695 (714)
Q Consensus 666 ~i~~~~~-a~~---------~~~~~~~~~~~~~~~~~~~~ 695 (714)
..=.... -|. ++|-.+..+.--|+-|..++
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~ 402 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV 402 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence 8744333 554 44445555555555555554
No 311
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.12 E-value=0.91 Score=48.41 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~----~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+-|...|++++..-|.+...|..-..-+..+|+.+.|-..|++++..-|.-. .|......=...|+.+.....+++
T Consensus 53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3366677777777788888888878888999999999999999998766533 333334466677999999999999
Q ss_pred HHhhCCCc
Q 005106 538 ILTLSPDY 545 (714)
Q Consensus 538 al~L~P~~ 545 (714)
+.++-|+.
T Consensus 133 ~~~~~~~~ 140 (280)
T PF05843_consen 133 AEELFPED 140 (280)
T ss_dssp HHHHTTTS
T ss_pred HHHHhhhh
Confidence 99998884
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=1.1 Score=51.65 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCC-HHHHHHH------HHHHHhcCCHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR-ILGFKLA-LECLELR------FCFFLALEDYQAA 531 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k-AL~l~P~-~~~~~~R------~~~~~~lgd~e~A 531 (714)
....+...+..++..||++..++.++|.++...|..-.|+.++.. +....|+ .+....+ +..+..+|+.++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (620)
T COG3914 82 DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA 161 (620)
T ss_pred cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence 336788888999999999999999999999999999999998888 8888885 4444444 7788999999999
Q ss_pred HHHHHHHHhhCCCchh
Q 005106 532 LCDVQAILTLSPDYRM 547 (714)
Q Consensus 532 l~d~~~al~L~P~~~~ 547 (714)
..+..++..+.|.++.
T Consensus 162 ~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 162 ELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 9999999999999954
No 313
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=1.1 Score=51.50 Aligned_cols=52 Identities=12% Similarity=-0.094 Sum_probs=37.2
Q ss_pred HHHhCCCChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 596 MLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 596 aL~l~P~~~~~~~~~------g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
+.+..|.+....+-+ |..+..+|+.+++.....++.++.|.+++ ...||+-.
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~~~ 185 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALMTA 185 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHHHH
Confidence 455555555554444 77888899999999999999999999844 45555544
No 314
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.29 Score=47.95 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--------------------
Q 005106 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (714)
Q Consensus 189 ~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~-------------------- 248 (714)
+|+.|.+-+.+ |-.|..+.+++...--......|.|+ +|+..+|..|++|++.-+-+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 67778887765 47788888888653222222578888 59999999999999984421
Q ss_pred ----CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 249 ----~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.+..+++.+|+.||+++.++.|.+.|++.+..++.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 03345789999999999999999999999998874
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.29 E-value=0.23 Score=50.88 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
+.+-|+.+.|.+.|.+|+++.|..+.-++-+|..-.+.|+++.|.+.|++.++|+|... .=-+|=-++.+.-.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p 79 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETP 79 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCC
Confidence 34455666666666666666666666666666666666666666666666666666555 222333334444333
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.25 E-value=0.29 Score=38.79 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
.+.+|..+.++|++++|++..+.+++++|+|..|..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445555555555555555555555555555555543
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.21 E-value=2.9 Score=45.46 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
....|++.++-+|++..+|..+....-.+-....-. ....++ -.+..+.-|++|++-+|
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a-------~~E~klsilerAL~~np 62 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRA-------LAERKLSILERALKHNP 62 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHH-------HHHHHHHHHHHHHHhCC
Confidence 456788999999999999988776554433211111 001111 14566778889999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----- 618 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg----- 618 (714)
++.. -+++.++...+.|+.-. -..-.++++..+|++..+| ++.+-..++
T Consensus 63 ~~~~--------L~l~~l~~~~~~~~~~~----------------l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 63 DSER--------LLLGYLEEGEKVWDSEK----------------LAKKWEELLFKNPGSPELW--REYLDFRQSNFASF 116 (321)
T ss_pred CCHH--------HHHHHHHHHHHhCCHHH----------------HHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence 8732 22222233333332221 1346899999999999999 555666655
Q ss_pred ChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 619 CPEAAMRSLQLARQHAASD------------------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~------------------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
.+++-...|.++++.-..- .+.+..+..-+.+.|+.|.|++.+.-.++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3566777777777654432 2234445555778899999999999998864
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.63 E-value=0.28 Score=56.01 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=83.7
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~-~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 657 (714)
.|..++... |.+|+.+|+-..|-..+ -..+++.++.+-|-.-.|-..+.++++++...+--++.+|..++.+.+.++|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 355556655 78899999999997654 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHH
Q 005106 658 LRKAEESIQMKRSFE 672 (714)
Q Consensus 658 l~~ye~Ai~i~~~~~ 672 (714)
++.+++|+.+.|+..
T Consensus 696 ~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHhcCCCCh
Confidence 999999999999875
No 319
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.27 E-value=0.64 Score=37.89 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt 244 (714)
|+|+- +|+.|.+.+.+. -.|..++.||.+...+.. .|.++ +|+..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 56665 788999988865 589999999986433332 78998 5999999999999863
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.18 E-value=0.22 Score=51.04 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
+.|.+.|++|+++-|+.+.-|...|..-...|+++.|...|.+.++++|
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4555555555555555555555555555555555555555555555555
No 321
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.66 Score=48.90 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
+.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++.+
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999998886655544
No 322
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.05 E-value=2.1 Score=46.34 Aligned_cols=125 Identities=19% Similarity=0.094 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcC-CCHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 495 VEAALAEINRILGFK-LALECL-------ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~-P~~~~~-------~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
++|++.-++||+..+ |.+.-+ +.++. ....-||..-...|+....+.|.-..-.+|..+.........
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~a--- 347 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAA--- 347 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHh---
Confidence 577888888888764 443221 11111 445568899899999999999997655555544443221111
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+|+.++...+- =-+.-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-+
T Consensus 348 ----------------------gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 348 ----------------------GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ----------------------HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 24444444433 223445677899999999999999999999999999999976655
Q ss_pred H
Q 005106 645 G 645 (714)
Q Consensus 645 G 645 (714)
+
T Consensus 406 ~ 406 (415)
T COG4941 406 Q 406 (415)
T ss_pred H
Confidence 4
No 323
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.66 E-value=0.56 Score=49.98 Aligned_cols=58 Identities=19% Similarity=0.062 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
++|...|+.|+.++|+++++....|...-+-++.-+|=..|-|||.+.|. .+++.+|+
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 55555555555555555555555555555555555555555555555553 45555544
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.64 E-value=0.29 Score=35.42 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
No 325
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.91 E-value=0.88 Score=52.20 Aligned_cols=121 Identities=16% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 502 INRILGFKLALECLELRF-CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~-~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
+-.+++-+|..-.+++.+ .-....|+.-+|+.++..++-+.|+..
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~---------------------------------- 247 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHN---------------------------------- 247 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccc----------------------------------
Confidence 345666666544445544 445678899999999999999888751
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
.| ..+..+|.+|.++|+..+|--++-.|+...|.-++-++.+|.++..+|.|--.+..
T Consensus 248 ----kd------------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ 305 (886)
T KOG4507|consen 248 ----KD------------------IALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLC 305 (886)
T ss_pred ----cc------------------chhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhh
Confidence 11 23456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH-HHHHHH
Q 005106 661 AEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 661 ye~Ai~i~~~~~-a~~~~~ 678 (714)
|..|....|+|+ +|=-|+
T Consensus 306 ydha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 306 YDHALQARPGFEQAIKQRK 324 (886)
T ss_pred hhhhhccCcchhHHHHHHH
Confidence 999999999999 664443
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.76 E-value=2.8 Score=42.50 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=64.8
Q ss_pred hhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 005106 576 QLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD 650 (714)
Q Consensus 576 ~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~ 650 (714)
-+|-.|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+|+++.+.+ ++.+..++.+++.
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4677888888887777665543221 256777888887777 456777999999999998775 8999999999999
Q ss_pred cCCHHHHH
Q 005106 651 TSHCEEGL 658 (714)
Q Consensus 651 ~G~~eeAl 658 (714)
+|++++|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999985
No 327
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.60 E-value=35 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHhh
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFFLKAYALA 682 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~---a~~~~~~~~~ 682 (714)
|.-.|.+.++.-.-.=..+++| ++.++.-+|.+++...+|+|||..+.. +-|+.. +---||.+|-
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 4556888888888888899999 899999999999999999999977653 334433 4444566553
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.29 E-value=0.35 Score=32.25 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
.+++++|++++.+|+.++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4566777777777777777766653
No 329
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.98 E-value=1.2 Score=39.34 Aligned_cols=56 Identities=25% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 615 LRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~---------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+.|++.+|++.+.+........ ..++.++|.+.+..|++++|+..+++||++-+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 56788999988777777665543 468899999999999999999999999998543
No 330
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=8.3 Score=42.97 Aligned_cols=178 Identities=11% Similarity=0.105 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.++++.=.+.++-+|+....|+.|=.++.+..-.. +++|.-. +.-+++=+.....+++.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~ek-----------~~~ld~eL~~~~~~L~~ 104 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLEK-----------QALLDEELKYVESALKV 104 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHHH-----------HHhhHHHHHHHHHHHHh
Confidence 77777777888899999999988777766432111 3344211 11345666777889999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
+|+...+- .+..-.|..... .+++ -|..++++|+.||.|-++|..|=.+..+..+.
T Consensus 105 npksY~aW-----~hR~w~L~~~p~------------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 105 NPKSYGAW-----HHRKWVLQKNPH------------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred CchhHHHH-----HHHHHHHHhCCC------------------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99864211 111111111111 1222 38899999999999999999998888775555
Q ss_pred ----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh------cC------CHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 621 ----EAAMRSLQLARQHAASDHERLVYEGWILYD------TS------HCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 621 ----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~------~G------~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+=++...+++.-++.|=.|+.||.+++-. .| .....+..=..||=-+|+.. +||..=+.|.-
T Consensus 162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 667888899999999999999999999883 35 36677888889999999998 99886665544
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.69 E-value=0.47 Score=34.97 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
+.|..+|.+-++.++|++|+.||.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677777777777777777777777765
No 332
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.64 E-value=2.8 Score=40.93 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
...++..-.+.|+.+++-..-|.++...|++.+|++.++.+.+-.|..+.+---+++||+.+|+.
T Consensus 30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 44555555566666666666666666666666666666666666666666666666666666654
No 333
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.53 E-value=12 Score=41.54 Aligned_cols=156 Identities=16% Similarity=0.050 Sum_probs=100.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------c-----CCC-------HHHHHHHH---------
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------F-----KLA-------LECLELRF--------- 519 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~---------l-----~P~-------~~~~~~R~--------- 519 (714)
..+.-+|-+.+++..++.++..+|+++.|-+.++|||= + ++. +....||.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34688999999999999999999999999999999862 2 211 01112332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
..+.+.|-+.-|++..+-.+.|||. ++. . +.....-..-.-+++ +-+..+++.+... ...+.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g----~ll~ID~~ALrs~~y---~~Li~~~~~~~~~-------~~~~~~~ 175 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-G----VLLFIDYYALRSRQY---QWLIDFSESPLAK-------CYRNWLS 175 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-h----hHHHHHHHHHhcCCH---HHHHHHHHhHhhh-------hhhhhhh
Confidence 3588999999999999999999999 543 1 111111111111222 1112222221110 0111122
Q ss_pred hCCCChhHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHhCCCChhHHHH
Q 005106 599 SDAPKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~---------------eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
. -|..-|..++++..+++. ++|-..+++|+..-|.-.-.+..
T Consensus 176 ~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 176 L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 2 335678899999999999 89999999999999875554443
No 334
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=1.4 Score=46.50 Aligned_cols=69 Identities=17% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
.=.++.+-++++.|.++.++.+.++|.+++-+.-+|.+++++|.+.-|+..++..++.=|+-. +=.+|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 444677789999999999999999999999999999999999999999999999999988877 655555
No 335
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.36 E-value=8.1 Score=39.66 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhc------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 005106 491 TKQNVEAALAEINRILGF------KLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l------~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~ 562 (714)
....+++|++.|.-||-. +|. ...+...+|+|..+|+.+.....+++|++.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~--------------------- 147 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF--------------------- 147 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH---------------------
Confidence 344577777777776642 222 122333579999999966666655555442
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC--C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--K----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~--~----~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
|.++++.... . ..+.+..|.+..++|++++|++.+.+.+...-.
T Consensus 148 ------------------------------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ------------------------------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ------------------------------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 2333322211 1 235667888888888888888888888876655
Q ss_pred Ch
Q 005106 637 DH 638 (714)
Q Consensus 637 ~~ 638 (714)
+.
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 44
No 336
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.29 E-value=3.3 Score=47.08 Aligned_cols=83 Identities=4% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMK 668 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-~eeAl~~ye~Ai~i~ 668 (714)
+-.|++|+...|+++.+|.+-..--.+-+-+.+--..|.+++...|++++.+.+-+.-+|.-+. ++.|-+.+-+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4478888888888888888776666666667778888888888888888888888888887777 888888888888888
Q ss_pred CCHH
Q 005106 669 RSFE 672 (714)
Q Consensus 669 ~~~~ 672 (714)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8877
No 337
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.27 E-value=0.17 Score=54.80 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=63.8
Q ss_pred ccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 005106 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI 260 (714)
Q Consensus 182 ~DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~ 260 (714)
.|++|.+ +|+.|-|||..|+++|.+|..-+..-+ ....+|+-. .+-+.+|..++.|.|-..-. +-++.-.+|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na-~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNA-EWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence 4899988 788899999999999988754333211 233455333 28899999999999987443 44666788999
Q ss_pred HHhhhChhhHHH
Q 005106 261 FANKFCCERLKD 272 (714)
Q Consensus 261 aAd~~~v~~L~~ 272 (714)
...+|+++.+..
T Consensus 225 i~~kF~~e~l~~ 236 (516)
T KOG0511|consen 225 IEVKFSKEKLSL 236 (516)
T ss_pred hhhhccHHHhHH
Confidence 999999887653
No 338
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.03 E-value=5.6 Score=38.90 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33445567999999999999999999999999999999999999999999999988888776
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.97 E-value=1.6 Score=37.54 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI---LYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~---ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..+|+=|...+..++|+...++|++..++..+.+..+|++ +.+.|+|++.++..-+=+.|..
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778899999999999999999999999999999875 7889999999988777666543
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.75 E-value=0.68 Score=34.14 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998853
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.23 E-value=3.8 Score=43.74 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
..++..++..+...|+.+++.+.+++-++.+|-+-.++..+=..++..|+...|+..|++.-.. --.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhhh
Confidence 3456667778888899999999999999999999999999999999999999999999987664 2234
Q ss_pred cCCCCCchhhHHHHHHHhhcCCC
Q 005106 684 SSQDSSCSSTVVSLLEDALKCPS 706 (714)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
.++|| +..+-.+.+++++||-
T Consensus 221 lgi~P--~~~~~~~y~~~~~~~~ 241 (280)
T COG3629 221 LGIDP--APELRALYEEILRQDP 241 (280)
T ss_pred cCCCc--cHHHHHHHHHHhcccc
Confidence 44444 5677777777777763
No 342
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.12 E-value=10 Score=44.96 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCHhh---HHHHHHHhhhcCChhHHHHHHHH
Q 005106 273 ACDRKLASLVASRED---AVELMGYAIEENSPVLAVSCLQV 310 (714)
Q Consensus 273 ~C~~~L~~~l~~~~n---~l~l~~~A~~~~~~~L~~~c~~~ 310 (714)
....||.+.-+.++. -+.+-++|++++.-.+++.|..-
T Consensus 462 ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 462 RATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345677776654432 23455678888888899999643
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.46 E-value=65 Score=36.68 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=35.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
.-+...|+|.++.-.-.=..+++|++.++...|.++.+.++|++|...+..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345666777777776666666777777777777777777777777766654
No 344
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=18 Score=44.60 Aligned_cols=158 Identities=14% Similarity=0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSL 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ay~~rg~ 457 (714)
..+.++|.+.++.|...+|++.|-+| +.+..|...-.+..+.|.+++=++.+.-|-+. ...+-.||-+.++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 34578999999999999999999764 44445555556666777777666555433221 1112222322221
Q ss_pred cCCh--------------------hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q 005106 458 YCEG--------------------DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL------- 510 (714)
Q Consensus 458 ~~~~--------------------~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P------- 510 (714)
.... +++. | .|-.+-=++..-|..+|..+..+|.|+.|+...+||=..+-
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~--y-~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKM--Y-EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhh--h-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 1000 1111 1 12223334556789999999999999999999999865432
Q ss_pred -------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 511 -------------------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 511 -------------------~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
..+-+.-.-..|...|-+++-|..++.++-|.-.++.
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 0111112223488999999999999999998876643
No 345
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.91 E-value=1.1 Score=50.08 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=67.8
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
+..++.|++..+||+..|++.++ -|+++.. + .|. ..-|-+...|++.|-+|++++||.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~-~idl~~~--------~----------l~~---~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLE-NIDLNKK--------G----------LYT---KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhh-ccCcccc--------h----------hhc---cCcchheehHHHHHHHHHHHHHHH
Confidence 56788899999999999998765 3444321 1 122 223445677899999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC
Q 005106 497 AALAEINRILGFKLALE-CLELRFCFFLA-LEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 497 eAl~~~~kAL~l~P~~~-~~~~R~~~~~~-lgd~e~Al~d~~~al~L~P~ 544 (714)
+|+..|+.+|-.--... .++.+..-+.. .+..|+....+--++.+.|.
T Consensus 182 DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 182 DAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 99999999985422111 11112211111 23455666666667777775
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.74 E-value=6.8 Score=37.32 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 480 YPYMYRASSLMTKQ---NVEAALAEINRILG-FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 480 ~ay~~rg~~l~~l~---r~~eAl~~~~kAL~-l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+..+++|-++.... +.++.|..+...++ -.|. -++.+.++..+.++|+|+.|++..+..++.+|+|.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45567777776654 46788999999996 4453 57888899999999999999999999999999994
No 347
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.54 E-value=50 Score=41.24 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-HHHHHH
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTK-------QNVEAALAEINRILGFKLA-LECLEL 517 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~---~ay~~rg~~l~~l-------~r~~eAl~~~~kAL~l~P~-~~~~~~ 517 (714)
+.|+.+-..| +.|+.-|++.-+-=|.-. +|.+..|.++.++ ..+++|+.+|++.-.- |. |--|.-
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHHh
Confidence 3444444444 555555555555554442 3444455555443 2478888888886632 33 333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 518 RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.+.+|..+|+|+|=+++|.-|++.-|+.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 667899999999999999999998888754
No 348
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=85.53 E-value=1.7 Score=37.12 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
++.+.+.+|+.+|++++++.|.+.|++.++..+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999885
No 349
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=4 Score=38.11 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------- 248 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~-------------- 248 (714)
|.+.. +|+.|.+.+. +|-+|-..+.|+.. +.+++-. |..+ +|...+|+.+++|+-..+-.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~p-~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNYP-IPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCCC-Cccc--chhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 45544 6677777655 57888888888763 3333322 3334 69999999999998653211
Q ss_pred ----------CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 249 ----------GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 249 ----------~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.++.+.+.++.-+|+++.+..|.+.|+..+...+.
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 02345678999999999999999999999998875
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.75 E-value=5.4 Score=34.37 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH---HHHHhcCCHHHHHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF---CFFLALEDYQAALCDVQA 537 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~---~~~~~lgd~e~Al~d~~~ 537 (714)
+...+..|.=+...++.++|+..+++|++-.++ ++.+..+| .+|.+.|+|.++++.--+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999998886 56666666 469999999998875433
No 351
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=0.9 Score=49.41 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
+-.-.-+++.+|....+|+++|..+..+.++++|++++..|...+|++....--
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 334445556777777777777777777777777777777777777777654433
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.47 E-value=1.2 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
+.+++++|.++..+|++++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788999999999999999998763
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.38 E-value=4.3 Score=39.25 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
-..++.+--+.|+.++...--|.++...|++.||++.++...+-.|..+.+---+.+||+-+|+.
T Consensus 30 e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 30 QAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33444455555555555555555555555555555555555555555555555555555555543
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.26 E-value=8 Score=39.69 Aligned_cols=47 Identities=15% Similarity=0.014 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
..|+..|.+|++-...- ....+-.|.+.+++|++++|+.-|.++|.-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 55666666666655431 234444666666666666666666666654
No 355
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.04 E-value=1.6 Score=46.21 Aligned_cols=85 Identities=9% Similarity=0.188 Sum_probs=62.4
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC---cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~~---Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~l 258 (714)
-++..|++..|-..+.+|.+.- .-.-.||.+++. -....+.++-+ ||+..+|+++|+|--||.+.-.+.-.|-+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 4788888889999998886542 234567877653 23346777776 999999999999999999872233356777
Q ss_pred HHHHhhhChh
Q 005106 259 LIFANKFCCE 268 (714)
Q Consensus 259 L~aAd~~~v~ 268 (714)
-++.|+++|+
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 7777777665
No 356
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=1.2 Score=48.51 Aligned_cols=117 Identities=13% Similarity=0.027 Sum_probs=69.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d 467 (714)
+.|.-.+..++|+.|..-|.++++..+..+ .-.......+ ...+.... ..+.-+.+..-... ..+..|+..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s---~~~~~e~~~~-~~~~~~~r--~~~~~n~~~~~lk~---~~~~~a~~~ 297 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS---RDREKEQENR-IPPLRELR--FSIRRNLAAVGLKV---KGRGGARFR 297 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc---cccccccccc-cccccccc--cccccchHHhcccc---cCCCcceec
Confidence 567888899999999999999877633200 0001111110 00000000 00111111111111 222666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
-.-+++.+|..+.||+.||..++.+.++++|+.++..+.+.+|+..
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 6667778888888888888888888888888888888888888643
No 357
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.00 E-value=18 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc----chhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAG----HIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
+-..-..+.+..++|...|...=+-+ |.-+....|.+..+.|+...|+..|..+-.
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44444556677788887777643333 233344456677888888888888875443
No 358
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.54 E-value=42 Score=38.81 Aligned_cols=208 Identities=15% Similarity=0.090 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+...+.+.+...+.|..+....+.|-.+..+|+.+.|+..++..+. +. .-+++-|+|++.-+-+|..|-.++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444556677788999999999999999999998889999999886 42 2245568888888888888888877
Q ss_pred HHHhhCCCchhhhhhHH-----------H-------------HHHHHHHHH-------hhhhhhHHHHHHh---------
Q 005106 537 AILTLSPDYRMFEGRVA-----------A-------------SQLHMLVRE-------HIDNWTIADCWLQ--------- 576 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~-----------a-------------~~~~~~l~~-------~~~~~~~A~~~~~--------- 576 (714)
....++-=...+|..-. . ......+.. ..--..++.-|..
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 77666543222211111 0 000111111 0000111211111
Q ss_pred -------hhhccccccccc--hHHHHHHHHHhCCCC-----h-hHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC--
Q 005106 577 -------LYDRWSSVDDIG--SLSVIYQMLESDAPK-----G-VLYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS-- 636 (714)
Q Consensus 577 -------l~~~~~~~~d~~--al~~~~qaL~l~P~~-----~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---~P~-- 636 (714)
+.-.|....... .+.-++..++. |+. . .-++-+|.+|-.||+.+.|...+...++- ...
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 112232222221 22333444433 322 1 23788999999999999999999998833 222
Q ss_pred --ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCHH
Q 005106 637 --DHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 637 --~~ea~~~~G~~ly~~G~-~eeAl~~ye~Ai~i~~~~~ 672 (714)
-+.|+|-+|..+.++|. +.||.+..+||-+-.-+++
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 46789999999999999 9999988888877654443
No 359
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.09 E-value=13 Score=36.99 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc-----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQERS 456 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~~rg 456 (714)
..++..+|.-+...|++++|++.|.++.+.. ..+.+..+-++....|++......++++-.+-..- .|...+|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr- 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR- 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH-
Confidence 3677889999999999999999999987761 23445667788899999999888877766553321 1222222
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
.-..-|..++..++|.+|...|-.++
T Consensus 115 ------------------------lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 ------------------------LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ------------------------HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22345667777888888888877765
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.59 E-value=2e+02 Score=39.15 Aligned_cols=313 Identities=12% Similarity=0.005 Sum_probs=179.1
Q ss_pred HHHHHHHhccchHHHHHHHHHH----Hhccchhh-HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAA----VNAGHIYS-IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~A----L~~~~~~a-~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~ 462 (714)
.++.+-+.+|.|..|+-++++= .+.+...+ +..+-.+|...++++.-..-... ....|++-.-....-..+..+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 5788888999999999999982 22222222 23344477788888765443321 223344433333333345569
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHH------
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC-FFLALEDYQAALCD------ 534 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~-~~~~lgd~e~Al~d------ 534 (714)
.|.++|++++..+|+....+...=......|.++..+...+-.+.=.++ .+.+.+.+. +--.+++|+.-...
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~ 1546 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNI 1546 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccc
Confidence 9999999999999999988888888888889999988877766654333 444444331 11233333322221
Q ss_pred -------H---------------------HHHHhhCCCchhhhhhH--HHHHHHHHHHHh---------hhh-------h
Q 005106 535 -------V---------------------QAILTLSPDYRMFEGRV--AASQLHMLVREH---------IDN-------W 568 (714)
Q Consensus 535 -------~---------------------~~al~L~P~~~~~~~~~--~a~~~~~~l~~~---------~~~-------~ 568 (714)
. .+.+.++|--..+.++- .++.....+-.. +.+ .
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~ 1626 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSA 1626 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 0 11111111111100000 011111111000 000 0
Q ss_pred hHHHHHHhhhhccccccccc-hHHHHHHHH-Hh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 569 TIADCWLQLYDRWSSVDDIG-SLSVIYQML-ES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~-al~~~~qaL-~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
..-+.|......-....++. .+-.++|++ .. +-.-++.|.+.|.+=-+.|+++-|....=.|.+.. -+++
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence 11233444444333332222 122333332 22 33445667777777677999999999999999988 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------------HHHHHHHHHHhh----ccCCCCCchhhHHHHHHHhhc
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQM-KRS------------FEAFFLKAYALA----DSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~------------~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 703 (714)
+.-++-.+..+|+-..|+...++.+++ .|+ ..-+|.||..+. +-+-. .+|.-|+..--+|.-
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 899999999999999999999999976 454 124555555543 33333 566666665555555
Q ss_pred C
Q 005106 704 C 704 (714)
Q Consensus 704 ~ 704 (714)
|
T Consensus 1784 i 1784 (2382)
T KOG0890|consen 1784 I 1784 (2382)
T ss_pred H
Confidence 5
No 361
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.54 E-value=3.9 Score=42.70 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
|++.|++|+.+.|+++..|+.+|.+....|+.=+|+=.|-||+...-.|. |.-|-.-.+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888755555 66665555554
No 362
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.11 E-value=93 Score=35.77 Aligned_cols=154 Identities=18% Similarity=0.043 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc---cch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA---GHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISS------- 444 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~---~~~---------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------- 444 (714)
+.+..+..+..-+|++.+|++....+.+. -|. ..+.-+|.-...-|.++.|...|..|.++
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 44466777778889999998887776554 111 12344666566677888888888887775
Q ss_pred ---CCCcHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 445 ---VTPLGWMYQERSLYCEGDKRWEDLDKATA-LDPTL----------SYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 445 ---~p~~~~ay~~rg~~~~~~eAl~d~~kAi~-LdP~~----------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
+-|++..|.+.|. .+|+.++++ +.|.+ +..++-.|.-.+.+|++.||-.-..+.|+...
T Consensus 404 a~~nlnlAi~YL~~~~-------~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGD-------AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHhHHHHHHHhcc-------HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 2344444444322 234444443 45554 35667788889999999999999999998753
Q ss_pred CHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 511 ALE-------CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 511 ~~~-------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.-+ .+..++.+...+|+..++..-.+-+.++..+
T Consensus 477 aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 477 AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 111 1234667888999999999988888887644
No 363
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.95 E-value=56 Score=32.73 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--HHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 491 TKQNVEAALAEINRILGFKLA--LECLELR-FCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~--~~~~~~R-~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
..|+.++|++.|...-.-.-. |-....| +.+..+.|+-.+|+.+|..+-.-.|-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~ 126 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI 126 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence 345666666666655543332 2222334 34666677777777777766655544
No 364
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.83 E-value=38 Score=37.14 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
...++.|.-||+.++++.|.-+|+||.+-.-.+.-+ +. +..+.|+++.+.+ ..+|++
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~--~~------~ei~ka~~e~ds~-k~~~N~ 182 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANERQRRAKEF--YY------EEVQKAIKEIDSS-KHNINM 182 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHhc-cCCCch
Confidence 356789999999999999999999999643212111 11 1245566666554 467776
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.20 E-value=5.7 Score=34.97 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHhccchHHHHHHHHHHHhc----c-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 005106 393 RLLRKEYDEAEHLFEAAVNA----G-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV 445 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~----~-------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (714)
....|+|.+|++.+.+.... + ...+..++|.++...|++++|+..+++||.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34678888887777665543 1 13566778889999999999999999888863
No 366
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.08 E-value=5.5 Score=41.59 Aligned_cols=61 Identities=20% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHh
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCFFLA 524 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~-P~~~~~~~R~~~~~~ 524 (714)
|...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++... |-+.+..|...++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999753 445566776666555
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.07 E-value=74 Score=34.83 Aligned_cols=186 Identities=11% Similarity=-0.031 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 430 HKLWAYEKLNSVISSVTPLGWMYQERSLY--CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 430 ~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
+..+-++.-..|++++|..+.+|.-.+.- --..+|-..|.+|++-- +.-+++.......|...+|. ..
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~r 268 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LR 268 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hh
Confidence 33444555566777888888777766431 11144555566655422 12222333333333322222 22
Q ss_pred cCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 508 FKLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 508 l~P~~~~~~~--R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
-|.+...|.. ++++-.++|+..+|++-++...+--|-..+...+. ++ ++..++-..-||+. ..+..+|
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe---NL---iEalLE~QAYADvq----avLakYD 338 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE---NL---LEALLELQAYADVQ----AVLAKYD 338 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH---HH---HHHHHHHHHHHHHH----HHHHhhc
Confidence 2344444443 35677888888888888888877777544433221 12 22222222223332 2222334
Q ss_pred ccc----hHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005106 586 DIG----SLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (714)
Q Consensus 586 d~~----al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 639 (714)
|+. |..+|..||-. +-=+++.-.++|+.-..++ |++.+.+|.+.||.-+-
T Consensus 339 dislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~----AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 339 DISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEIN----AVEAIHRAVEFNPHVPK 397 (556)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHH----HHHHHHHHhhcCCCCcH
Confidence 443 33355555422 1224555556666655544 67778899999998653
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.87 E-value=12 Score=42.37 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.|+...|-.-...+|.-.|. |..-..++.+...+|+||+|.+++.-+-..=..- ..+.+.+..-..-+.+|+.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHHH
Confidence 45666666666667766674 6655667777888888888877765544321110 1233333334445556666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHH-H
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWI-L 648 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~-l 648 (714)
| ++.-.-+|...-.+++...--+..-..+|.+++|.-...+.+.++|......+| +... +
T Consensus 376 a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 376 A------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred H------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence 6 222233333333333332222233345688999999999999999864322111 1111 2
Q ss_pred HhcC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 649 YDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 649 y~~G-~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
+..| -|.||.. .-|.-|+-+..|.--|..|+
T Consensus 438 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 469 (831)
T PRK15180 438 FNDGNAFSEAFH---AGIQSQRLNDTFMETALSLA 469 (831)
T ss_pred ccCcchHHHHHH---hhhhhhhhhHHHHHHHHHHH
Confidence 2223 2555543 33444444455555555444
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.68 E-value=16 Score=35.33 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+.+.++...+....-+.|+.++.....||++...|+++||+..+++..+--+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 79999999999999999999999999999999999999999999999999887765
No 370
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.28 E-value=84 Score=33.29 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=99.9
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CC-----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh----CCCc---hhh-hhh
Q 005106 490 MTKQNVEAALAEINRILGFK----LA-----LECLELRFCFFLALE-DYQAALCDVQAILTL----SPDY---RMF-EGR 551 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~----P~-----~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L----~P~~---~~~-~~~ 551 (714)
..+|+++-|...+.|+=.+. |+ ....++-|.-....+ ++++|+..+++|.++ .+.. ..+ .-|
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35788888888888876654 32 123456667677788 999999999999887 2221 111 112
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
......+ ++.|-.|...+... +...++.+-.--|+.+..++-+=.++.+.++.+++.+.++++
T Consensus 84 ~~iL~~L----------------a~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 84 LSILRLL----------------ANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHH----------------HHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 2222222 22333333333333 456777777777999999977777888899999999999999
Q ss_pred HHhCC-CChhHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 005106 631 RQHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 631 l~l~P-~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~ 666 (714)
+..-+ ....--...+.+ .+-.-....|...+.+.+.
T Consensus 148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 98765 222222222222 2223344667777777766
No 371
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.24 E-value=43 Score=34.83 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~ 558 (714)
+..+|-+..+.|||++++..+.+++..+|. .+--.....+| ...|..-.+.+-+....+-......-.....+...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 567899999999999999999999999885 33333333332 333444444444444444333220000001111111
Q ss_pred HHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH----HHHHHHHHHH-----c-----CChHHH
Q 005106 559 MLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL----YFRQSLLLLR-----L-----NCPEAA 623 (714)
Q Consensus 559 ~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~----~~~~g~~L~~-----l-----g~~eeA 623 (714)
..+...+.. .+.. +..++.-|--...+++. +-.+|..+-- . .-.+.|
T Consensus 84 ~kie~EL~~~C~ei------------------i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 84 KKIEDELIDICNEI------------------IRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 112211111 1111 22333322222222221 1112222111 1 123678
Q ss_pred HHHHHHHHH-----hCCCChhHH---HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC--CCchh
Q 005106 624 MRSLQLARQ-----HAASDHERL---VYEGWIL-YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD--SSCSS 692 (714)
Q Consensus 624 l~~~~~Al~-----l~P~~~ea~---~~~G~~l-y~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~--~~~~~ 692 (714)
...|++|+. +.|.++-.+ .|.+.-+ --+|+.++|+...++|+ -.|..--|+-=| -.-|.
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af----------d~a~~~l~~l~e~~~~d~~ 215 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF----------DEAISELDTLSEESYKDST 215 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH----------HHHHHGGGGSHTTTHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HHHHhhhcccchhhhHHHH
Confidence 888888776 567776432 1222223 33799999999999884 344444443111 22356
Q ss_pred hHHHHHHHhh
Q 005106 693 TVVSLLEDAL 702 (714)
Q Consensus 693 ~~~~~~~~~~ 702 (714)
.++|||-|=|
T Consensus 216 ~ilqlLrdNl 225 (236)
T PF00244_consen 216 LILQLLRDNL 225 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788887643
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.61 E-value=8.2 Score=43.10 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=16.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhc
Q 005106 424 LGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 424 ~~~~~G~~~~A~~~~~~aI~~ 444 (714)
.++++|+|..|...|..|+++
T Consensus 185 ~~yrqk~ya~Aa~rF~taLel 205 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALEL 205 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 467788888888888888775
No 373
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.43 E-value=13 Score=46.84 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc----------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CC
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA----------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VT 446 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~----------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~p 446 (714)
-....|......|.+.+|.+ ..+++.. .-...+..+++++...|++++|+..-.+|.-+ .|
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 34567777788888888887 4444433 22334678999999999999999988877654 34
Q ss_pred CcHHHHHHHHhcC----ChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 005106 447 PLGWMYQERSLYC----EGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--- 511 (714)
Q Consensus 447 ~~~~ay~~rg~~~----~~~eAl~d~~kAi~L--------dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--- 511 (714)
+....|.+...+. ....|+..+.+|..+ -|.-+..-.+.+.++..+++++-|+...+.|++++-.
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 5566666665442 236677777777654 5667777889999999999999999999999986421
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 512 ------LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 512 ------~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
..+++..+.++..+|++..|+........
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 23344455667777777777766665443
No 374
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.09 E-value=25 Score=34.88 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhhHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGRVA 553 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~----~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~--~~~~~~~~~ 553 (714)
.+|..+|.-|.+-|++++|+..|.++.....++ +.+.+.-.+....||+..+.....+|-.+-.. +....+|..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567788888999999999999999988765443 33444455777888999988888888775443 222333333
Q ss_pred HHHHHHHHHHhhhhhhHHH
Q 005106 554 ASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~ 572 (714)
+ ..++..-..+++..|.
T Consensus 117 ~--~~gL~~l~~r~f~~AA 133 (177)
T PF10602_consen 117 V--YEGLANLAQRDFKEAA 133 (177)
T ss_pred H--HHHHHHHHhchHHHHH
Confidence 3 3333444455666663
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.57 E-value=30 Score=35.73 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
-+.+.++.++||...+.-++-+|. ..+-+....++.-.|+|++|+.-++-+-+++|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 577889999999999999999995 66667788899999999999999999999999984
No 376
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=77.56 E-value=19 Score=35.32 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=71.9
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCc-----ceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC-----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~-----~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~ 257 (714)
=|.|.|||..|-.-|.-|.--+.-|..-|...-++... .-.-|. -+|.-|.-+|+|+..|++- ++.-.-..
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID---RDP~~FgpvLNylRhgklv-l~~l~eeG 97 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID---RDPFYFGPVLNYLRHGKLV-LNKLSEEG 97 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec---cCcchHHHHHHHHhcchhh-hhhhhhhc
Confidence 47888999999999999988887777777654322211 122232 6799999999999999998 88755566
Q ss_pred HHHHHhhhChhhHHHHHHHHHHhh
Q 005106 258 ILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 258 lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
+|.-|++|.++.|...-.+.+...
T Consensus 98 vL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHH
Confidence 999999999999887766665543
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.55 E-value=8.3 Score=36.77 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHH---cCChHHHHHHHHHHHH-hCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 005106 604 GVLYFRQSLLLLR---LNCPEAAMRSLQLARQ-HAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK 677 (714)
Q Consensus 604 ~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~-l~P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~ 677 (714)
....|+.+.+|.+ ..+..+.+.++...++ -.| ..-+-+||++...|++|+|++|+..-+.-++.+||+. |=-||
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567788888877 3455678888888886 233 3456688899999999999999999999999998887 65555
Q ss_pred H
Q 005106 678 A 678 (714)
Q Consensus 678 ~ 678 (714)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.04 E-value=2.6e+02 Score=38.18 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----------------
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----------------- 448 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~----------------- 448 (714)
+.+.+.+.-..|.++-|..+.-+|-+...+.++..+|...-.+|+-..|+..+++.++++-+.
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 344455555569999999999999988888888999999999999999999999999764321
Q ss_pred HHHHHHHHhc------CChhHHHHHHHHHHhcCCCChHHHHHHH
Q 005106 449 GWMYQERSLY------CEGDKRWEDLDKATALDPTLSYPYMYRA 486 (714)
Q Consensus 449 ~~ay~~rg~~------~~~~eAl~d~~kAi~LdP~~~~ay~~rg 486 (714)
+.+....+.| ...+.=+..|..|+++.|..-..|+.+|
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1122222222 1113335679999999998888888888
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.00 E-value=7.5 Score=28.26 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 005106 515 LELRFCFFLALEDYQAALCD--VQAILTLSPD 544 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d--~~~al~L~P~ 544 (714)
++..|..+..+|++++|+.- |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44445555555556666555 3355555554
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.50 E-value=2e+02 Score=34.59 Aligned_cols=285 Identities=10% Similarity=-0.025 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh---
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG--- 461 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~--- 461 (714)
..+.-....+..|++.++...-.+ +.-.|...|..--.+....+. .....+...+..+|+.+.+-.-|..+...
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~ 111 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPT-LKDYPLYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELAR 111 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-ccCCCcHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 345556666777777776554443 332334333333233332232 12446677788888877666666544111
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELRFCFF 522 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~---P~~----------------~~~~~R~~~~ 522 (714)
.....+|.+--.-.|.+....+..+.++...|+-++|.+...++.--. |+. +.+..|....
T Consensus 112 ~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 112 REDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred ccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 112233333222348888888999999999999999998888886543 221 1112233334
Q ss_pred HhcCCHHHHHHHH-------------HHHHhhCCCchhhh-hhH------HHHHHHHHHHHhhhhhhHHHHHHhhhhccc
Q 005106 523 LALEDYQAALCDV-------------QAILTLSPDYRMFE-GRV------AASQLHMLVREHIDNWTIADCWLQLYDRWS 582 (714)
Q Consensus 523 ~~lgd~e~Al~d~-------------~~al~L~P~~~~~~-~~~------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 582 (714)
...|+...|-... ..++.-+|...... ... .-....+..+...++.+.|..+..-.....
T Consensus 192 l~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~ 271 (644)
T PRK11619 192 MKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQ 271 (644)
T ss_pred HHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 4445544443322 22333344422100 000 000111112223333333332221110000
Q ss_pred ccc--------------------ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 583 SVD--------------------DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 583 ~~~--------------------d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
... +..+...++.+. ..+.+...+-.+-.+-.+.++.+.+...+...-.-..+....+|
T Consensus 272 ~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~-~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~Y 350 (644)
T PRK11619 272 KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI-MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY 350 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc-cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHH
Confidence 000 111111122111 11122233333333444888998888777775554556788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
.+|-.+..+|+-++|-..|+++.. .++|=.|
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a~-~~~fYG~ 381 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLMQ-QRGFYPM 381 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-CCCcHHH
Confidence 999999999999999999999844 6776544
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.63 E-value=18 Score=41.46 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhH
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNC-PEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea 640 (714)
.+|.+||...|+++++|..-+.=+..-|. .+.|...+.++|+.+|+++..
T Consensus 126 ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 126 KIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 48999999999999999999988888887 999999999999999998854
No 382
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=73.43 E-value=80 Score=37.44 Aligned_cols=148 Identities=16% Similarity=0.044 Sum_probs=82.5
Q ss_pred HHHHHHHhccchHHHHHHHHH------HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh----c-CCC-cHHHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEA------AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS----S-VTP-LGWMYQER 455 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~------AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~----~-~p~-~~~ay~~r 455 (714)
.++.+..-.|++.||.+.|.+ |++.--.--++..+.-+...|..++--..+++-.+ . .|. -+.++..-
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSa 716 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISA 716 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcc
Confidence 455566667788888887763 55541111123333334444444443333332111 1 111 12333333
Q ss_pred HhcCChhHHHH----------HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 005106 456 SLYCEGDKRWE----------DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL 525 (714)
Q Consensus 456 g~~~~~~eAl~----------d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~l 525 (714)
|.. ++|+. .++-+-+++-+.-++....+.-+..++.+.-|-+.|.+.=..+ ..-.++.+.
T Consensus 717 Ge~---~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~ 786 (1081)
T KOG1538|consen 717 GEH---VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVET 786 (1081)
T ss_pred cch---hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeec
Confidence 333 44442 2555666777777788888888888887777777776643111 122456788
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 005106 526 EDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~ 545 (714)
|+|.+|.+--++-.++-|+-
T Consensus 787 ~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred ccchHhHhhhhhCccccccc
Confidence 89999988777777776664
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.19 E-value=1.1e+02 Score=31.13 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhcCCHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFK-----LALECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~-----P~~~~~~~R~~~~~~lgd~e~A 531 (714)
+.-.+.+|..|. ..+.+.|+..+.++|++. ++++.+..++-++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444445555554 556677777777777762 2356666677777777777766
No 384
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.15 E-value=14 Score=39.47 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
..++..++..+...|+++.++..+++-|+.+|- -..|...-.+|...|+...|++.|++.-++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677788888899999999999999999994 455555556889999999999999887774
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.67 E-value=20 Score=30.62 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=10.0
Q ss_pred HHHHHhccchHHHHHHHHHHHh
Q 005106 390 GCVRLLRKEYDEAEHLFEAAVN 411 (714)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~ 411 (714)
++-+-..|++.+|+.+|++||+
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 3333444455555544444433
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.50 E-value=14 Score=31.49 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=23.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRA 486 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg 486 (714)
+-+.|++.+|+..|+ +|++.+.+++.+.|+.+.--..|.
T Consensus 16 ~D~~gr~~eAi~~Y~-----------------------~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 16 AEKEGNAEDAITNYK-----------------------KAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHhcCCHHHHHHHHH-----------------------HHHHHHHHHHHhCCChHHHHHHHH
Confidence 455688888877764 555555666666666654433333
No 387
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.25 E-value=9.3 Score=42.70 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=66.0
Q ss_pred HHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-HHH-H--HHHHHHHHhcCCCcHHHHHHHHhcCChhH
Q 005106 389 LGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-KLW-A--YEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (714)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~-~~~-A--~~~~~~aI~~~p~~~~ay~~rg~~~~~~e 463 (714)
-+.....+|.|.-|+.-|..||++ ....+ .|+ ++. + +...... +.+.+...|...++- +-
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a----------~~k~~~~~~~di~~vaSf--Ietklv~CYL~~rkp---dl 246 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAA----------LSKPFKASAEDISSVASF--IETKLVTCYLRMRKP---DL 246 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhh----------ccCCCCCChhhHHHHHHH--HHHHHHHhhhhcCCC---ch
Confidence 355666778888888888888877 11100 011 000 0 1111112 233445555555444 77
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
|+..--+.|-++|.+.-.+..+|.++..+.||.||-..+--|.
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7877788899999999999999999999999999887666554
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.47 E-value=10 Score=27.58 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 005106 640 RLVYEGWILYDTSHCEEGLRK--AEESIQMKR 669 (714)
Q Consensus 640 a~~~~G~~ly~~G~~eeAl~~--ye~Ai~i~~ 669 (714)
.++..|-.+|.+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 334444443
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.55 E-value=1.8e+02 Score=32.31 Aligned_cols=165 Identities=11% Similarity=-0.023 Sum_probs=93.6
Q ss_pred HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCch-----hhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT-----LSPDYR-----MFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~-----L~P~~~-----~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
|+-+|- .+.+...+.++..+||.+.|-...++||= +.|.+. ...|+.. -.-+..+--..|
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~ff 103 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQFF 103 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---------cCCccccchHHH
Confidence 455784 77777888999999999999999999863 334431 1111110 000001111111
Q ss_pred Hhhhhccccc---cccc-hHHHHHHHHHhCCC-ChhH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChhHHHH
Q 005106 575 LQLYDRWSSV---DDIG-SLSVIYQMLESDAP-KGVL-YFRQSLLLLRLNCPEAAMRSLQLARQHAAS-----DHERLVY 643 (714)
Q Consensus 575 ~~l~~~~~~~---~d~~-al~~~~qaL~l~P~-~~~~-~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~-----~~ea~~~ 643 (714)
..++-..... +-.+ |+....=.+.+||. ++.. .+..-..-.+-+.++-=++.++........ -+.--+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 1111111111 2222 46777777888888 5543 233333444555555444444443331111 2245577
Q ss_pred HHHHHHhcCCH---------------HHHHHHHHHHHhcCCCHHHHHHHHH
Q 005106 644 EGWILYDTSHC---------------EEGLRKAEESIQMKRSFEAFFLKAY 679 (714)
Q Consensus 644 ~G~~ly~~G~~---------------eeAl~~ye~Ai~i~~~~~a~~~~~~ 679 (714)
.+.+++.+++- ++|-....+||..-|....-.++..
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 88888988888 8899999999999998886666555
No 390
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.28 E-value=12 Score=44.71 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=50.1
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC----cHHHHHHH------HhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTP----LGWMYQER------SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~----~~~ay~~r------g~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
.-|+++++.+++.+|.-.|..++.+.|. .+....++ ...+++.+++.+-+-|++..|....+...|+-.|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 3466778888888876667767766552 12221111 1123335555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 005106 490 MTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
-.+++++-|+.+..-.....|+
T Consensus 138 ~al~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 138 EALNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 5555555555555444445553
No 391
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.44 E-value=2.7e+02 Score=33.59 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHH
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI---SSVTPLGWMYQ 453 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI---~~~p~~~~ay~ 453 (714)
.+..+.-.|+.++|.-+..+..+++|.++|.+-=.. .+...+++.+.++++=.....+.= ++.|..|.++-
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHH
Confidence 344455688899999999999999999999874222 233445565555554332222111 23456788888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhcCCHHHHH
Q 005106 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELR-FCFFLALEDYQAAL 532 (714)
Q Consensus 454 ~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R-~~~~~~lgd~e~Al 532 (714)
.+|.+ ++|++.|-+- -+|.-+ -.+-.+++++.+|++-.++-= =|....+..+ +.-+++.++.-+||
T Consensus 864 svGMC---~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaI 930 (1189)
T KOG2041|consen 864 SVGMC---DQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAI 930 (1189)
T ss_pred hhchH---HHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHH
Confidence 88888 7777666331 122111 113345666666665544321 2344444443 34567778888888
Q ss_pred HHHHHH
Q 005106 533 CDVQAI 538 (714)
Q Consensus 533 ~d~~~a 538 (714)
+-+++|
T Consensus 931 e~~Rka 936 (1189)
T KOG2041|consen 931 EKDRKA 936 (1189)
T ss_pred HHhhhc
Confidence 888877
No 392
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.16 E-value=26 Score=39.94 Aligned_cols=154 Identities=12% Similarity=-0.041 Sum_probs=101.3
Q ss_pred HhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH--HHHH--hcCChhHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY--QERS--LYCEGDKRWED 467 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay--~~rg--~~~~~~eAl~d 467 (714)
...|+.-.|-+....+++.. .+.-....+++...+|+|+.|+.++..+-..-..-..+. ..|. .+++.++|+..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 35688888888888888773 333445678899999999999888765444322222222 2222 34555888877
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH-HHH-H-HHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC-LEL-R-FCFFLALE-DYQAALCDVQAILTLSP 543 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~-~~~-R-~~~~~~lg-d~e~Al~d~~~al~L~P 543 (714)
-...+.-.-..++...--|..-..+|-+++|.-.+.+.+.++|..+. |.+ . ..-|..-| -+.+|...=-+.-+++.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQSQRLND 459 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhhhhhhhH
Confidence 66666666666666666666677889999999999999999986433 333 2 12233333 46666666666666777
Q ss_pred Cchh
Q 005106 544 DYRM 547 (714)
Q Consensus 544 ~~~~ 547 (714)
.++.
T Consensus 460 ~~~~ 463 (831)
T PRK15180 460 TFME 463 (831)
T ss_pred HHHH
Confidence 7653
No 393
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=65.70 E-value=3.9 Score=44.39 Aligned_cols=125 Identities=12% Similarity=0.159 Sum_probs=92.5
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH--HHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL--LLEILIF 261 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~--v~~lL~a 261 (714)
+++......+++|+.+|...|+.|..+....-.-+....+.+. +++...+..+..|.|.+ ++ ..+.+ ...++..
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 3444456679999999999999998876654222223445555 47889999999999998 54 33333 3445556
Q ss_pred HhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHH
Q 005106 262 ANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFL 312 (714)
Q Consensus 262 Ad~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l 312 (714)
...+-++..+..|...+..-+.+..|++..+..+..+....|..++...+.
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~ 155 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM 155 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 578899999999999988855567899999999999888888888764443
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.69 E-value=53 Score=34.03 Aligned_cols=96 Identities=18% Similarity=0.069 Sum_probs=61.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHH----HHHHHhhcc--
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFF----LKAYALADS-- 684 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~--a~~----~~~~~~~~~-- 684 (714)
-|++-|...+|+...+.-++-+|.++.-...+=..|.-.|++++|+...+-+-.+.|++- +-. .+..++-+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 456677777788888888888888877777777777777888888887777777777764 111 112221111
Q ss_pred --CCCC---C-chhhHHHHHHHhhcCCCCc
Q 005106 685 --SQDS---S-CSSTVVSLLEDALKCPSDR 708 (714)
Q Consensus 685 --~~~~---~-~~~~~~~~~~~~~~~~~~~ 708 (714)
..-| - -|.--|..|-.||.|-|||
T Consensus 90 ag~~~Pgflg~p~p~wva~L~aala~h~dg 119 (273)
T COG4455 90 AGGAVPGFLGGPSPEWVAALLAALALHSDG 119 (273)
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHHhcccCC
Confidence 1111 1 2445566777888888886
No 395
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.21 E-value=3e+02 Score=32.15 Aligned_cols=229 Identities=18% Similarity=0.151 Sum_probs=131.0
Q ss_pred ChhhHHHHHHHHHHhhcCCHhhHHHHHHHh-hhcCChhHHHHHHHHHHhhccCCCChHHHHHHhccccccchhhhccchh
Q 005106 266 CCERLKDACDRKLASLVASREDAVELMGYA-IEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLAS 344 (714)
Q Consensus 266 ~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A-~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~~r~~~v~~~~ 344 (714)
-.+.++..|.++|+..-+ ..+.++--+ ..++-+.|-+.|+-.++.-|.+.+.+. +++-+|..-+ ..|..-
T Consensus 29 ~~~~~~~ic~~hl~~~k~---si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c~~~l-----~~~e~k 99 (711)
T COG1747 29 ILDVLKGICDEHLAHSKN---SIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLCTRVL-----EYGESK 99 (711)
T ss_pred HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHHHHHH-----HhcchH
Confidence 346788999999986543 233333322 345566777888877666665555443 3333443221 133333
Q ss_pred hhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHH
Q 005106 345 FSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLAR 423 (714)
Q Consensus 345 ~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~ 423 (714)
..++..+. +-+.. ..+.+..+.+++++.-- .+.+-.-.+...+ ++++-..|..+|.+|+.. =|..-..+.-.
T Consensus 100 mal~el~q-~y~en--~n~~l~~lWer~ve~df---nDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~e 172 (711)
T COG1747 100 MALLELLQ-CYKEN--GNEQLYSLWERLVEYDF---NDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKE 172 (711)
T ss_pred HHHHHHHH-HHHhc--CchhhHHHHHHHHHhcc---hhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHH
Confidence 34444444 43332 45577788888776322 1233334455444 448889999999999865 11111112212
Q ss_pred HHHHh----CCHHHHHHHHHHHHhc--CCCcHHHHHHH--Hhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Q 005106 424 LGYIK----GHKLWAYEKLNSVISS--VTPLGWMYQER--SLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT- 491 (714)
Q Consensus 424 ~~~~~----G~~~~A~~~~~~aI~~--~p~~~~ay~~r--g~~---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~- 491 (714)
++.++ |+-.+-.-...+-|+. ....+...++. ..| ...++|++-....+++|-.+..|..++-.-+.+
T Consensus 173 vWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 173 VWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 22221 3222222222222221 22333333332 122 234899999999999999999998888887877
Q ss_pred -------------------cCCHHHHHHHHHHHHhcCC
Q 005106 492 -------------------KQNVEAALAEINRILGFKL 510 (714)
Q Consensus 492 -------------------l~r~~eAl~~~~kAL~l~P 510 (714)
-.++-+|+.+|++-+-++-
T Consensus 253 y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 253 YRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred hccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 6779999999999988764
No 396
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.87 E-value=58 Score=40.71 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 651 (714)
|.-|++ |--.|+-|.=|..+|+++.++|.++|=+++|..|++.-|+.++.-.-+--+-|.+
T Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 539 LSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 444433 3346888999999999999999999999999999999999999888777777655
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=61.64 E-value=94 Score=39.64 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCc-
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLS-------PDY- 545 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~-------P~~- 545 (714)
...|..-+..|.+.+|.. ..+++.+ .|+ ..++..++.++..+||+++|+..-++|.-+. +-+
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 446667777788888887 5555543 354 5677888899999999999999977765543 222
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh--------CCCChhHHHHHHHHHHHc
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l--------~P~~~~~~~~~g~~L~~l 617 (714)
+..++..+ ....... .-.+|+..+.+++.+ .|.-+....+.+.++.-+
T Consensus 1015 ~~~y~nla------l~~f~~~------------------~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1015 KLAYGNLA------LYEFAVK------------------NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred HHHhhHHH------HHHHhcc------------------CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 11222222 1111112 222357777777665 688888889999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 618 NCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+..+-|++..+.|+..+-.-.. -..--|.++-..++.-++...++.|+..
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999996643222 1112233333445555555555554443
No 398
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.38 E-value=1.1e+02 Score=36.04 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
.+++.+|++++++.... +-+|=.| |||-|-|.. +.-+.|+.|-.+-|
T Consensus 729 ~~~~l~g~~~~C~~lLi---~t~r~peAal~ArtYlp-------s~vs~iv~~wk~~l 776 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI---STQRLPEAALFARTYLP-------SQVSRIVELWKEDL 776 (794)
T ss_pred HHHHHcCCHHHHHHHHH---hcCcCcHHHHHHhhhCh-------HHHHHHHHHHHHHh
Confidence 46788899999987665 4455455 999887753 44555666554443
No 399
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.96 E-value=29 Score=29.65 Aligned_cols=10 Identities=20% Similarity=-0.140 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q 005106 429 GHKLWAYEKL 438 (714)
Q Consensus 429 G~~~~A~~~~ 438 (714)
|++.+|+..|
T Consensus 20 g~y~eAl~~Y 29 (77)
T cd02683 20 GRFQEALVCY 29 (77)
T ss_pred ccHHHHHHHH
Confidence 4444444443
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.72 E-value=1.4e+02 Score=33.72 Aligned_cols=136 Identities=13% Similarity=-0.054 Sum_probs=78.5
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHHhc----cc-hhhHhhH
Q 005106 349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQR--LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----GH-IYSIAGL 421 (714)
Q Consensus 349 ~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~--~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~----~~-~~a~~~l 421 (714)
.=..||...-......+.+|=..+..--.+.... -.++..+|.-|..+|+++.|++.|-+|=.. +| ...+.++
T Consensus 114 ~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~ 193 (466)
T KOG0686|consen 114 LDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNL 193 (466)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHH
Confidence 3367886554433333333333322222222223 367788999999999999999999995322 22 2334455
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~ 501 (714)
-+|-.-.|++-.-....++|.+.- .+ +..+-.--| +..+..-|.+...+++|..|...
T Consensus 194 i~VSI~~~nw~hv~sy~~~A~st~--~~------------------~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~ 251 (466)
T KOG0686|consen 194 ILVSIYMGNWGHVLSYISKAESTP--DA------------------NENLAQEVP--AKLKCAAGLANLLLKKYKSAAKY 251 (466)
T ss_pred HHHHHhhcchhhhhhHHHHHHhCc--hh------------------hhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHH
Confidence 556666677766666655554431 00 111111112 22556667777888899999998
Q ss_pred HHHHH
Q 005106 502 INRIL 506 (714)
Q Consensus 502 ~~kAL 506 (714)
|-.+.
T Consensus 252 fL~~~ 256 (466)
T KOG0686|consen 252 FLLAE 256 (466)
T ss_pred HHhCC
Confidence 87665
No 401
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.70 E-value=17 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++..+...|+..-..|+|++|+.+|.+|++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34555566677777777888888877777654
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.68 E-value=24 Score=37.88 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
..-+..+.+-|.+.+|+...+|++.++| +...+..+-.++..+||--.|+..|++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4456688899999999999999999999 4565666777899999999999888763
No 403
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.22 E-value=69 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCc
Q 005106 524 ALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..++.+.|+..+++|+++||+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 5578899999999999999984
No 404
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.89 E-value=8.8 Score=41.37 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCChhHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 592 VIYQMLESDAPKGVLYFR-QSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~-~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
++.++|...|.++++|.. -+.-+.-.+..+.+...+.++++.||+++-.+
T Consensus 129 I~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 129 IFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 689999999999999987 66677788999999999999999999998543
No 405
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.74 E-value=1.4e+02 Score=31.96 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-------cchhhHhh--HHH--HHHHhCCHHHHHHHHHHHHhc-------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIYSIAG--LAR--LGYIKGHKLWAYEKLNSVISS------- 444 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~~~a~~~--lg~--~~~~~G~~~~A~~~~~~aI~~------- 444 (714)
.-|+-++-.+.+..++|++-.+.|.+.+.. +...-..+ +-- .-.+.+-..+=++..-.|++.
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 356677888889999999999999876543 21110010 000 001111111112222233332
Q ss_pred ---CCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--
Q 005106 445 ---VTPLGWMYQERSLYCEGDKRWEDLDKATALDP---------TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-- 510 (714)
Q Consensus 445 ---~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP---------~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-- 510 (714)
+..+|..|+.||.|.+.++-+..+.+.-.-+- .....|.---..|.++++-..--+.|.+||.++.
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 45689999999887555554444433322221 1234555555677778877777788999998874
Q ss_pred -CHHH-HHHHH---HHHHhcCCHHHHHHHHHHHHh
Q 005106 511 -ALEC-LELRF---CFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 511 -~~~~-~~~R~---~~~~~lgd~e~Al~d~~~al~ 540 (714)
.|-. ...|- -.+.+-|+|++|-.||-.|.+
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 3332 23342 468999999999999988886
No 406
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=59.72 E-value=2.5e+02 Score=33.93 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
++..+|.+++.+++= +...+--|++.+-+-..|..+-.-|-.++|++.|-|
T Consensus 827 ~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 NQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 456667777766632 333444577777777777777777777777776654
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.03 E-value=2e+02 Score=32.44 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=21.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
-|.-+.+.|....|+++|.+|+..-.
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 35667889999999999999988755
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.34 E-value=45 Score=34.67 Aligned_cols=22 Identities=23% Similarity=-0.008 Sum_probs=17.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCh
Q 005106 617 LNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
.+.++.|+..+++|++++|+-+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCCC
Confidence 4577788888888888888754
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.29 E-value=2e+02 Score=32.08 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=36.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cc-h--hhHhhHHHHH--HHhCCHHHHHHHHHHHHhc
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GH-I--YSIAGLARLG--YIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~-~--~a~~~lg~~~--~~~G~~~~A~~~~~~aI~~ 444 (714)
.......+..++|..|.+.|+..+.. .. . ..+..+...| =.+.++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555667888999999999987763 22 1 1233333333 3466777777777766554
No 410
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=2.3e+02 Score=33.38 Aligned_cols=147 Identities=17% Similarity=0.105 Sum_probs=90.5
Q ss_pred cchHHHHHHHHHHHhc--------------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc-----C------------
Q 005106 397 KEYDEAEHLFEAAVNA--------------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISS-----V------------ 445 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~--------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~-----~------------ 445 (714)
..|++|+..|.-|.+. -|.+++.-++.+...+|+.+.|-....++|-. +
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4677888888877654 14556667888999999999998888777642 2
Q ss_pred ----CCcHHHHHHH-------HhcCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHh-------cCCHHHHHHHHHHHH
Q 005106 446 ----TPLGWMYQER-------SLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLMT-------KQNVEAALAEINRIL 506 (714)
Q Consensus 446 ----p~~~~ay~~r-------g~~~~~~eAl~d~~kAi~LdP~-~~~ay~~rg~~l~~-------l~r~~eAl~~~~kAL 506 (714)
|.+-.-|... ..-|=..-|++...-.+.|||. ++.+-...-.+|.- .=++.++..-.++.-
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2222222111 0111227788888889999999 76554444433332 223334443344333
Q ss_pred hcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 005106 507 GFKLALECLELRFCFFLALED---YQAALCDVQAILTLSPD 544 (714)
Q Consensus 507 ~l~P~~~~~~~R~~~~~~lgd---~e~Al~d~~~al~L~P~ 544 (714)
+=|+...-...+.+|..... -+.|+.++.+|+..-|.
T Consensus 412 -~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 -QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 23654322345555555554 78899999999999996
No 411
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=56.68 E-value=33 Score=35.41 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=58.2
Q ss_pred CccEE-EEEcCeEEEeehhhh-hcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH--HH
Q 005106 181 LRNVV-FRIHEEKIECDRQKF-AALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP--NL 254 (714)
Q Consensus 181 ~~DV~-l~v~~~~f~aHr~VL-Aa~S~yF~amF~~~~~--Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~--~~ 254 (714)
+.|++ +-|||..+..-..-| .-.-....+||++.+. -+......|. =+-..|+-|++|+-|..+. ++. .+
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID---RDG~lFRyvL~~LRt~~l~-lpe~f~e 82 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID---RDGFLFRYVLDYLRTKALL-LPEDFAE 82 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc---CCcchHHHHHHHhcccccc-cchhhhh
Confidence 45644 556666443322212 2222344566665221 1222445555 4567999999999996665 655 57
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKL 278 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L 278 (714)
+..|..-|++|+++.....+.+-.
T Consensus 83 ~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 83 VERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHHHHHHHHHccccHHHHHhccc
Confidence 899999999999998887665443
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.49 E-value=4.3e+02 Score=31.85 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=103.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 005106 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (714)
..++.+.+...+++.-.-.-+ ....|-+|.++..+|+.++|...|+++.. .. .|||..++..+..... +
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~---~fYG~LAa~~Lg~~~~-----~- 393 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QR---GFYPMVAAQRLGEEYP-----L- 393 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CC---CcHHHHHHHHcCCCCC-----C-
Confidence 677777766666663111111 34445577777889999999999999854 33 3677776665421000 0
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
. . ... .. -.+.+...| -..++..|..+|...+|.+-.+.+++. . +.+-+...+.+-.
T Consensus 394 -~-----------~-~~~-~~--~~~~~~~~~-----~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~ 450 (644)
T PRK11619 394 -K-----------I-DKA-PK--PDSALTQGP-----EMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAF 450 (644)
T ss_pred -C-----------C-CCC-Cc--hhhhhccCh-----HHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHH
Confidence 0 0 000 00 112222222 356888999999999999999988885 3 3456677777788
Q ss_pred hcCCHHHHHHHHHHHHhc------CC-----CH---------HHHHHHHHHhhccCCCCCchh
Q 005106 650 DTSHCEEGLRKAEESIQM------KR-----SF---------EAFFLKAYALADSSQDSSCSS 692 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i------~~-----~~---------~a~~~~~~~~~~~~~~~~~~~ 692 (714)
+.|.++-|+....++-.. =| .+ +.-++.|++--.|+.||..-|
T Consensus 451 ~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 451 NQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 889988888666554221 01 11 124456777778999987543
No 413
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.66 E-value=17 Score=39.19 Aligned_cols=81 Identities=6% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+.|+-..-|+++..|...+.--.+.|-+.+--..|.+++...|.|++.+.+ ...=+..-++++.+-+.+.+++.++|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 5778888889999999998888888999999999999999999999999888 666778889999999999999999988
Q ss_pred HH
Q 005106 671 FE 672 (714)
Q Consensus 671 ~~ 672 (714)
..
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 76
No 414
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=55.59 E-value=4.1e+02 Score=31.37 Aligned_cols=199 Identities=10% Similarity=-0.070 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~-P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+...-.|++++.=...+...|.+-+.-.-..|+.+-|-..+.++.++- |+ +..+..-+.+-...|++..|...++++
T Consensus 313 ~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 313 FSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3666677788888788888888888888888899999999999998873 44 554444566778889999999999999
Q ss_pred HhhCCCchhh-hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH-H
Q 005106 539 LTLSPDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL-R 616 (714)
Q Consensus 539 l~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~-~ 616 (714)
.+--|++... ..+......++.+..+.. ........++-|.+.+-. ..+++..+-... -
T Consensus 393 ~~e~pg~v~~~l~~~~~e~r~~~~~~~~~---~~~l~s~~~~~~~~~~i~----------------~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 393 ESEYPGLVEVVLRKINWERRKGNLEDANY---KNELYSSIYEGKENNGIL----------------EKLYVKFARLRYKI 453 (577)
T ss_pred HhhCCchhhhHHHHHhHHHHhcchhhhhH---HHHHHHHhcccccCcchh----------------HHHHHHHHHHHHHH
Confidence 9977998542 233333444433333332 111222233333332211 122222322222 2
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-----HCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G-----~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
-++.++|...+..|+.+.|++.--+...-.+.+..+ ++-+.+...+-...+.++...++...
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k 520 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDK 520 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHH
Confidence 677888999999999999998776666655555554 44455555555555555544444444
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.02 E-value=31 Score=41.29 Aligned_cols=34 Identities=12% Similarity=-0.109 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
.|++..|+.....-..++|-.-+.--..+.+++.
T Consensus 379 And~~kaiqAae~mfKLk~P~WYLkS~meni~l~ 412 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVWYLKSTMENILLI 412 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCceehHHHHHHHHHHH
Confidence 4667777777777777777766655555555543
No 416
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=53.77 E-value=2.9e+02 Score=29.04 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-C--HHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhC-CCchhhhhhHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGF-KL-A--LECLELRFC-FFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAAS 555 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l-~P-~--~~~~~~R~~-~~~~lgd~e~Al~d~~~al~L~-P~~~~~~~~~~a~ 555 (714)
...+|.+.-+.+||++.+....++++. +| . .+--+.... .....|..-.+.+-+..+-+-. .+...- ....+.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~-~~~~~~ 82 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED-HVASIK 82 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchH-HHHHHH
Confidence 356788888899999999999999987 54 2 333333333 3445566677777666532221 110000 001112
Q ss_pred HHHHHHHHhhhh-hhHHHHHHhhhhc--cccccccchHHHHHHHHHhCCCChhHHHHHHHHHH---HcCChHHHHHHHHH
Q 005106 556 QLHMLVREHIDN-WTIADCWLQLYDR--WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL---RLNCPEAAMRSLQL 629 (714)
Q Consensus 556 ~~~~~l~~~~~~-~~~A~~~~~l~~~--~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~---~lg~~eeAl~~~~~ 629 (714)
..+..+...+.. .+.. +.+.+. .....+.++-..|.++ .+++|-.++.+.. +..-.+.|+..|+.
T Consensus 83 ~yr~kie~EL~~iC~ei---l~lid~~Lip~~~~~eskVFy~Km------KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~ 153 (244)
T smart00101 83 EYRGKIETELSKICDGI---LKLLESHLIPSASAAESKVFYLKM------KGDYHRYLAEFKTGAERKEAAENTLVAYKS 153 (244)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhCccccCcHHHHHHHHHH------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 222222211111 1111 011100 0000111122222222 1233333443321 11225578999998
Q ss_pred HHH-----hCCCChhHH---HHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCc---hhhHHHH
Q 005106 630 ARQ-----HAASDHERL---VYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC---SSTVVSL 697 (714)
Q Consensus 630 Al~-----l~P~~~ea~---~~~G~~ly-~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 697 (714)
|++ +.|.++-.+ .|.+.-+| -+++.++|.....+|+. .|.+--|+ |+.++ |..++||
T Consensus 154 A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd----------~Ai~~ld~-l~ee~y~dstlImqL 222 (244)
T smart00101 154 AQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD----------EAIAELDT-LGEESYKDSTLIMQL 222 (244)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHhhc-cChhhhHHHHHHHHH
Confidence 886 557777542 22222233 36999999988887743 34444442 23333 7889999
Q ss_pred HHHhh
Q 005106 698 LEDAL 702 (714)
Q Consensus 698 ~~~~~ 702 (714)
|-|=|
T Consensus 223 LrDNL 227 (244)
T smart00101 223 LRDNL 227 (244)
T ss_pred HHHHH
Confidence 98754
No 417
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.13 E-value=4.3e+02 Score=30.89 Aligned_cols=196 Identities=15% Similarity=0.070 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~-~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+++..++.++.+. .-+.=-..+++.++.+..++..++-. .++.+++...+...|.+|+..--+ | +
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~-------~----~ 165 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIP-------R----R 165 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcc-------h----h
Confidence 457888889998887 55566677888888887777666433 566779999999999988865321 0 0
Q ss_pred hhHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 461 GDKRW-EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 461 ~~eAl-~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
...|+ +..+|.+++=|++.+-...+- .+.++-+..+-..-++....--|....++++|++-..-++
T Consensus 166 q~~~i~evWeKL~~~i~dD~D~fl~l~-------------~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 166 QNAAIKEVWEKLPELIGDDKDFFLRLQ-------------KKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred hhhhHHHHHHHHHHhccccHHHHHHHH-------------HHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 11222 356777777777665433221 1111111111111111222234667788999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cccchHHHHHHHHHhCCCChhHH
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
+.|-.+.- +-..+...++..-+.+.+-+-+....+.-.+- +.+.++..|+.-+-.+-++-.+|
T Consensus 233 ~~d~k~~~-----ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 233 EHDEKDVW-----ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hhcchhhh-----HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEe
Confidence 99887732 22334444444333333333333333332222 22236777777777777775554
No 418
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.12 E-value=24 Score=42.32 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc----chhhH--hhHHH--HHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG----HIYSI--AGLAR--LGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~----~~~a~--~~lg~--~~~~~G~~~~A~~~~~~aI~~~p~~~~ay 452 (714)
.+....+--|+++++.+.|.+|---|..++.+- +..++ .+.+. +....|++..++..-+-+....|..-.++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 345556677888888888888877788777762 22222 12333 33446788888888787888888877777
Q ss_pred HHHHhc----CChhHHHHHHHHHHhcCCCChHH
Q 005106 453 QERSLY----CEGDKRWEDLDKATALDPTLSYP 481 (714)
Q Consensus 453 ~~rg~~----~~~~eAl~d~~kAi~LdP~~~~a 481 (714)
..|+.. ++.+-|++|..-....+|++..+
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 776432 23367778877778888887544
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.81 E-value=2e+02 Score=32.52 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=79.9
Q ss_pred HHHHHHH--HHHHhcCCHHHHHHHHHHHHhc----CC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCC
Q 005106 480 YPYMYRA--SSLMTKQNVEAALAEINRILGF----KL------ALECLELRFCFFLALEDYQAALCDVQAILT---LSPD 544 (714)
Q Consensus 480 ~ay~~rg--~~l~~l~r~~eAl~~~~kAL~l----~P------~~~~~~~R~~~~~~lgd~e~Al~d~~~al~---L~P~ 544 (714)
.+|..+= .-+++.+++.+|.+.-+..+.- |- ....|+....+|...|+...--.-+.+-++ |.-+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 4455433 3344558888888877666531 11 122344445567777775554444444333 3323
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
..|+....+.+-.-.-+-..++.|+-+.+-.. ..+.+-. -.-+.+.|.+|.+-.-++.+..|.
T Consensus 205 ---~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~------------~pe~~sn--ne~ARY~yY~GrIkaiqldYssA~ 267 (493)
T KOG2581|consen 205 ---EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV------------YPEAASN--NEWARYLYYLGRIKAIQLDYSSAL 267 (493)
T ss_pred ---chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc------------Ccccccc--HHHHHHHHHHhhHHHhhcchhHHH
Confidence 23444444444334444555666642211111 1111111 134667888999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 005106 625 RSLQLARQHAASD 637 (714)
Q Consensus 625 ~~~~~Al~l~P~~ 637 (714)
+.+-+|++..|++
T Consensus 268 ~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 268 EYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhCcch
Confidence 9999999999983
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.15 E-value=45 Score=33.15 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
+...++.+...| ++..+.+.+.++..+|+.++|.+..+++..+-|.
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345677777778 5777888899999999999999999999999983
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.74 E-value=3.1e+02 Score=28.86 Aligned_cols=132 Identities=11% Similarity=-0.018 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHH----------------HHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINR----------------ILGFKLA-LECLELRFC-FFLALEDYQAALCDVQA 537 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~k----------------AL~l~P~-~~~~~~R~~-~~~~lgd~e~Al~d~~~ 537 (714)
-.++.-+...|..|.+.|++.+|...|=. .-+-.|. .+.+..|+. -|..+|+...|...++.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35567788889999999998888764411 1122343 666677885 58999999999987766
Q ss_pred HHhh----CCCchh----hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 538 ILTL----SPDYRM----FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 538 al~L----~P~~~~----~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
-.+. +|+... +.......+....+-...+.- .+..+..|.++ |...|+.||....+...
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~------------Y~~~L~rd~~~~~~L~~ 233 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEK------------YKPSLKRDPSFKEYLDK 233 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHH------------THH---HHHHTHHHHHH
T ss_pred HHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHH------------hCccccccHHHHHHHHH
Confidence 6655 676421 111112233333333333332 34455556555 56667777888787777
Q ss_pred HHHHHHHcCCh
Q 005106 610 QSLLLLRLNCP 620 (714)
Q Consensus 610 ~g~~L~~lg~~ 620 (714)
.|..+.....+
T Consensus 234 IG~~yFgi~~~ 244 (260)
T PF04190_consen 234 IGQLYFGIQPP 244 (260)
T ss_dssp HHHHHH---S-
T ss_pred HHHHHCCCCCC
Confidence 88877765543
No 422
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.10 E-value=1.2e+02 Score=37.14 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHHHHHh-hCCCchh--h----hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch----
Q 005106 521 FFLALEDYQAALCDVQAILT-LSPDYRM--F----EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS---- 589 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~-L~P~~~~--~----~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a---- 589 (714)
-+...||+++|...|-+.|. ++|.+.. | ..+--+.++..+.+.-+.+-+.-..++..|-++.+++.+.-
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 34444555555555544443 4444422 1 01122333344444444444444555666666665543210
Q ss_pred ------HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 590 ------LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 590 ------l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.-+++.|+++ +.+-|..++|+....+.-. --+++-.++-++|+|+||++...
T Consensus 457 ~~~g~~~fd~e~al~I--------------lr~snyl~~a~~LA~k~~~-------he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 457 CDKGEWFFDVETALEI--------------LRKSNYLDEAELLATKFKK-------HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred CCCcceeeeHHHHHHH--------------HHHhChHHHHHHHHHHhcc-------CHHHHHHHHHHhcCHHHHHHHHh
Confidence 0134444443 4556777777665443321 23566777888899999986643
No 423
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.25 E-value=27 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++.+...++-.-..|+|++|+.+|..||+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455556666667778888888888887764
No 424
>PF12854 PPR_1: PPR repeat
Probab=49.55 E-value=37 Score=23.96 Aligned_cols=30 Identities=3% Similarity=-0.149 Sum_probs=18.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 508 FKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 508 l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+.|+...|...-..|.+.|+.++|++-|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356655555566666777777777766653
No 425
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.56 E-value=32 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+.++.+...|+-.-..|+|++|+.+|.+||+.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556666666777777777777776654
No 426
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.53 E-value=64 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH
Q 005106 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (714)
Q Consensus 399 y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI 442 (714)
++.|+..+.+|++. -..|++.+|+..|.++|
T Consensus 3 ~~~A~~l~~~Av~~-------------D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 3 LQKAIELVKKAIEE-------------DNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH
Confidence 45667777777554 34477777777764433
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.28 E-value=65 Score=26.94 Aligned_cols=10 Identities=30% Similarity=0.059 Sum_probs=4.4
Q ss_pred CCHHHHHHHH
Q 005106 429 GHKLWAYEKL 438 (714)
Q Consensus 429 G~~~~A~~~~ 438 (714)
|++++|+..|
T Consensus 22 g~~~eAl~~Y 31 (77)
T smart00745 22 GDYEEALELY 31 (77)
T ss_pred CCHHHHHHHH
Confidence 4444444443
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.21 E-value=1.9e+02 Score=34.52 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 522 FLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 522 ~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+.++++|..+++.|...+.-=|.+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D 387 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISD 387 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 445555555555555555544443
No 429
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=47.62 E-value=1.8e+02 Score=29.55 Aligned_cols=173 Identities=16% Similarity=0.055 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHH-HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 494 NVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAALC-DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~e~Al~-d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
+-++-+.+|-+-|++.=.+.+|+- |--....+|||-++|+ +|++|..+=-.+-.-++..---...+
T Consensus 8 q~e~~vkeyven~gvEyrfgCY~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG------------ 75 (248)
T KOG4014|consen 8 QEEAEVKEYVENIGVEYRFGCYEEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYG------------ 75 (248)
T ss_pred HhHHHHHHHHHhcCceeeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhh------------
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-------LNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 572 ~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~-------lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+++-++-.-...+...|...+..+.+ -+.+.+..+.|+++.. .-+.+.|.+.+++|-.++ ++++-+++
T Consensus 76 -~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~L 150 (248)
T KOG4014|consen 76 -MYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLL 150 (248)
T ss_pred -hhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHH
Q ss_pred HHHHHhc------------------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 645 GWILYDT------------------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 645 G~~ly~~------------------------G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
...+..- .+-+.|++..-+|.++.--.. |=.-+-|.|+|
T Consensus 151 S~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGD 214 (248)
T KOG4014|consen 151 STMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGD 214 (248)
T ss_pred HHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccC
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.52 E-value=3.2e+02 Score=30.14 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=60.6
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 414 ~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
-..++...|--|.+.||.+.|.+++.+..+... ++...=+-...-..+|..|++..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktv------------------------s~g~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTV------------------------SLGHKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh------------------------hcccchhhHHHHHHHHHhhccHH
Confidence 345677788889999999999888774433211 22222233455566777777777
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
=..+-|+-.+..++---+. .-|....-..|=|--|+++|..|-.
T Consensus 159 lV~~~iekak~liE~GgDW---eRrNRlKvY~Gly~msvR~Fk~Aa~ 202 (393)
T KOG0687|consen 159 LVTESIEKAKSLIEEGGDW---ERRNRLKVYQGLYCMSVRNFKEAAD 202 (393)
T ss_pred HHHHHHHHHHHHHHhCCCh---hhhhhHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777654443 3333333334555566666666544
No 431
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.33 E-value=27 Score=42.28 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=51.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhhccCCCCC
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALADSSQDSS 689 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~-~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~-i~~~~~-a~~~~~~~~~~~~~~~~ 689 (714)
.+.+.+-++-|+...+. ..++|+ -++.+...|--||..|+|++|...|-++|. ++||+. -+| ||++
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 34555555555544322 122222 246778889999999999999999999998 599988 666 5555
Q ss_pred chhhHHHHHHH
Q 005106 690 CSSTVVSLLED 700 (714)
Q Consensus 690 ~~~~~~~~~~~ 700 (714)
.=......||.
T Consensus 412 ~IknLt~YLe~ 422 (933)
T KOG2114|consen 412 RIKNLTSYLEA 422 (933)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.10 E-value=45 Score=33.16 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..+..++-..+.+...|++..+.+.+.++...|+.++|.+..+++..+=|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3456667778888889999988888999999999999999999999999954
No 433
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.08 E-value=32 Score=29.40 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++.+...|...-..|+|++|+.+|..||+.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3444455555666667777777777777664
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.73 E-value=1.6e+02 Score=35.75 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLAR-LGYIKGHKLWAYEKLNSVISSVTP-LGWM 451 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~a~~~lg~-~~~~~G~~~~A~~~~~~aI~~~p~-~~~a 451 (714)
....+++-+.|-...+|+.-++..+..=++. +...++..|. -..+-||.++|+...-.+++..-+ .+.+
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 4455777778888888887777776432221 1111111111 123457778887777777776433 3344
Q ss_pred HHHHHh
Q 005106 452 YQERSL 457 (714)
Q Consensus 452 y~~rg~ 457 (714)
|...|+
T Consensus 281 ~Cl~GR 286 (1226)
T KOG4279|consen 281 YCLCGR 286 (1226)
T ss_pred eeeech
Confidence 444443
No 435
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.43 E-value=1.3e+02 Score=34.35 Aligned_cols=121 Identities=14% Similarity=0.002 Sum_probs=59.8
Q ss_pred hccchHHHHHHHHHH--HhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH-hcCChhHHHHHHHHH
Q 005106 395 LRKEYDEAEHLFEAA--VNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS-LYCEGDKRWEDLDKA 471 (714)
Q Consensus 395 ~~g~y~eA~~~f~~A--L~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg-~~~~~~eAl~d~~kA 471 (714)
.+|+++++....... +..=|..-....++-+.++|.++.|+...+ ++..-++++ .+++.+.|++. |
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl~lg~L~~A~~~---a 341 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELALQLGNLDIALEI---A 341 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHH---C
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHHhcCCHHHHHHH---H
Confidence 567888876665421 211122233446667788888888766532 223333332 12233444421 2
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
- ..++..-|..+|.+-+..|+++-|...|.|+= + +..+..+|...|+-+.=.+--
T Consensus 342 ~--~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d---~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 342 K--ELDDPEKWKQLGDEALRQGNIELAEECYQKAK----D---FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp C--CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHH
T ss_pred H--hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C---ccccHHHHHHhCCHHHHHHHH
Confidence 2 23356778888888888888888888777743 2 233445666677654443333
No 436
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.40 E-value=42 Score=28.15 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 380 lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
.+.+..+...|+..-..|++++|+.+|.+|++.
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666777777889999999999888765
No 437
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.09 E-value=1.1e+02 Score=34.31 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l 599 (714)
.-+...+||..|.+-|+.+++..+... ..++++...-....|..|...+-.+|...++..+.-
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~-----------------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~ 200 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAV-----------------NHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPE 200 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChh-----------------hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccch
Confidence 356777889999998888888765421 012222222333556667666766677777653221
Q ss_pred CCCChhHHHHHHH-HHHHcCChHHHHHHHH--HHHHhCCCChhH------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 600 DAPKGVLYFRQSL-LLLRLNCPEAAMRSLQ--LARQHAASDHER------LVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 600 ~P~~~~~~~~~g~-~L~~lg~~eeAl~~~~--~Al~l~P~~~ea------~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.....+.++.... .+.+.. +-.+...+ ++....-..... +++=+..-..+|+|+.|+...=|++++-
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~-- 276 (380)
T TIGR02710 201 RLALYQVTSHDELEDVIKRN--ASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELI-- 276 (380)
T ss_pred hhhhhhhhhhhHHHHHHHhH--HhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--
Confidence 1112222222110 011111 10111111 111111111111 1122334457899999999999998873
Q ss_pred HHHHHH-H--HHHhhccCCCCC
Q 005106 671 FEAFFL-K--AYALADSSQDSS 689 (714)
Q Consensus 671 ~~a~~~-~--~~~~~~~~~~~~ 689 (714)
..+.+ . ++-+-+++++|+
T Consensus 277 -~q~~l~~~~~~~l~~~~~~~~ 297 (380)
T TIGR02710 277 -VQIRLEERGKYGLDTDSINPD 297 (380)
T ss_pred -HHHHHHHccCCCCCCCcCChh
Confidence 23333 2 455555555554
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.05 E-value=1.3e+02 Score=33.53 Aligned_cols=121 Identities=16% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCcH-HHHHHHHh------cCChhHHHHHHHHHHhcCCC---ChHHHHHHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISS-VTPLG-WMYQERSL------YCEGDKRWEDLDKATALDPT---LSYPYMYRASSL 489 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~-~p~~~-~ay~~rg~------~~~~~eAl~d~~kAi~LdP~---~~~ay~~rg~~l 489 (714)
.++-.++.++|..|.+.++..+.. .++.. ..|..... ..+.++|.+.+++.+..+-. ....+.....+.
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 445567889999999999988875 33232 12222211 23558888888887765321 223333333333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 490 MTKQNVEAALAEINRILGFKLAL---ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~~---~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
..+..+..+........+ +|.+ ..+..-+.=....|+|+.|+.-+=|++++=
T Consensus 217 ~~~~~~~~~~~~~~~~~~-~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 217 KALESILSALEDKKQRQK-KLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHhhccchhhhhcccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 333333332222222110 1111 111112223467899999999998888873
No 439
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.68 E-value=8.6e+02 Score=31.34 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHH--------HhCCHH----HHHHHHHHHHhcCCCc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGY--------IKGHKL----WAYEKLNSVISSVTPL 448 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~--------~~G~~~----~A~~~~~~aI~~~p~~ 448 (714)
+.+.-+-+|.+++..|+-.+|+.+|.+|..- +...++..+ ++. ..|+.- .|..+|.+++++-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l--v~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll--- 993 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL--VYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL--- 993 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHH--HHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH---
Confidence 3344467888889999999999999988765 333343322 333 344432 2355566555542
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----HHHHHHHH
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPT----LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFC 520 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~----~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~----~~~~~R~~ 520 (714)
..++..++++.--.+||+--|+ -+-.+.+.-+-..++|.+-+|... |--+|+. +++.-.-.
T Consensus 994 -------e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 994 -------EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred -------HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHH
Confidence 2234446666666666664433 345566666667778888877643 3347763 23322234
Q ss_pred HHHhcCCHH
Q 005106 521 FFLALEDYQ 529 (714)
Q Consensus 521 ~~~~lgd~e 529 (714)
++.+-|.++
T Consensus 1063 vLfecg~l~ 1071 (1480)
T KOG4521|consen 1063 VLFECGELE 1071 (1480)
T ss_pred HHHhccchH
Confidence 555555543
No 440
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.60 E-value=36 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
++++|+..+.+|++.+. .|++++|+..|..+|+.
T Consensus 2 ~l~kai~Lv~~A~~eD~-------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE-------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH-------------hhhHHHHHHHHHHHHHH
Confidence 35678888888876543 48888888888887775
No 441
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.10 E-value=41 Score=28.72 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
.++.+...++..-..|+|++|+.+|.+||+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455566677777888999999999888764
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.35 E-value=43 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 380 lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+.++..+...++..-..|+|++|..+|..+|+.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555555667777777777776654
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.73 E-value=49 Score=37.30 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFK--------LA--LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--------P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+...+.-+..-+|+|..|+...+-+ .++ |. ...++..|.+|..++||.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888899999999876542 222 22 23467789999999999999999999875
No 444
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.72 E-value=55 Score=37.42 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=36.7
Q ss_pred cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 585 ~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
++++ +..+++|++--+|++..++..++.+|.+||...|+-
T Consensus 466 GdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 466 GDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred ccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 7788 888999999999999999999999999999887654
No 445
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.61 E-value=54 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
.++.+...|+..-..|+|++|+.+|..|++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566666677777777777777654
No 446
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=1.7e+02 Score=34.90 Aligned_cols=80 Identities=13% Similarity=-0.046 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
..+++-|...+..-|++ +....+++.+|..+.+.|.|++.+..|-+.+|. +-+-..-..+...-|.-++|+..
T Consensus 371 ~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~ 450 (872)
T KOG4814|consen 371 VVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTC 450 (872)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHH
Confidence 45555555554444433 344556677777777788888888888777774 44333344445556777777777
Q ss_pred HHHHHhh
Q 005106 535 VQAILTL 541 (714)
Q Consensus 535 ~~~al~L 541 (714)
..+....
T Consensus 451 ~~~~~s~ 457 (872)
T KOG4814|consen 451 LQKIKSS 457 (872)
T ss_pred HHHHHhh
Confidence 7766553
No 447
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.55 E-value=1.7e+02 Score=34.24 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHh--ccchHHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 383 LLAFHQLGCVRLL--RKEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 383 ~~A~~~lG~~~~~--~g~y~eA~~~f~~AL~~-------~~~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
.+|+-+||.+..- ...-..+++.|.+||.. .|.|.|.++|..+++.+++.+|++....|
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 4677777766442 23456678899999876 38899999999999999999999876654
No 448
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=38.97 E-value=1.8e+02 Score=34.77 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=34.4
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+++.||.+..++-=++-| +.|+-.|.-|...++|+||-+.|.||-+
T Consensus 786 ~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 4556666666555444444 4678889999999999999999988754
No 449
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.85 E-value=57 Score=38.02 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 462 ~eAl~d~~kAi~L-----dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
..+++.|.+||.. +-.+.+||.++|.-+.+.++|.||+..+-.|-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666777654 44567999999999999999999998887774
No 450
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=38.63 E-value=6.6e+02 Score=28.80 Aligned_cols=12 Identities=25% Similarity=-0.003 Sum_probs=5.7
Q ss_pred HHhCCHHHHHHH
Q 005106 426 YIKGHKLWAYEK 437 (714)
Q Consensus 426 ~~~G~~~~A~~~ 437 (714)
.+.|+.+.|++.
T Consensus 329 l~lg~L~~A~~~ 340 (443)
T PF04053_consen 329 LQLGNLDIALEI 340 (443)
T ss_dssp HHCT-HHHHHHH
T ss_pred HhcCCHHHHHHH
Confidence 455555555443
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.44 E-value=2.4e+02 Score=26.28 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=54.5
Q ss_pred hHHHHHHHhhhcCCC--CchhHHHHHHHHHHhh-h--hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhh-
Q 005106 346 SLYCLLSEVAMNLDP--RSDKTVCFLERLLESA-E--TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS- 417 (714)
Q Consensus 346 ~~~~~l~~V~~d~~~--rs~~~~~LLe~Lv~~a-~--~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a- 417 (714)
+..-.++|+...... ....+..+|++..+.. . .+..+.. +..+=..+.. ...++.+.|...... +...|
T Consensus 24 ~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~ 100 (126)
T PF08311_consen 24 PWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLAL 100 (126)
T ss_dssp HHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHH
T ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHH
Confidence 344567787665543 4567778888855422 1 1211111 1122222222 223888888876554 44444
Q ss_pred -HhhHHHHHHHhCCHHHHHHHHHHHH
Q 005106 418 -IAGLARLGYIKGHKLWAYEKLNSVI 442 (714)
Q Consensus 418 -~~~lg~~~~~~G~~~~A~~~~~~aI 442 (714)
|..-|..+...|++.+|.+-|..+|
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 5556788999999999999888765
No 452
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.14 E-value=4.9e+02 Score=32.51 Aligned_cols=233 Identities=17% Similarity=0.072 Sum_probs=126.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~-~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl 499 (714)
.+..++.-|++..|...|..+.+...+ .++.|+.- |++.-..+ ..-|..+.. ..-+-.+.|+
T Consensus 182 ~aD~~~~f~h~~~a~~~y~stkrd~~nd~am~~~a~--------alEm~sls-~Fvq~~a~q--------~~sqyme~a~ 244 (960)
T KOG1938|consen 182 GADLLFMFGHPNLAFDAYHSTKRDFNNDKAMVYYAG--------ALEMRSLS-AFVQPDATQ--------FPSQYMENAF 244 (960)
T ss_pred ccchhhhhccccchhhhhhhhhcchhhhhHHhHhhh--------hhhhhhhh-hhcCCcchh--------hHHHHHhhhh
Confidence 445667777788888887777665433 33333322 11111111 011111110 0111235577
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+..++.-++ ..+..+-+-++..+|.+.+|...+-+...-++++.+ +....+ .|.|.+
T Consensus 245 ~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~-----allleq-----------aal~f~--- 305 (960)
T KOG1938|consen 245 PLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLS-----ALLLEQ-----------AALCFG--- 305 (960)
T ss_pred HHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhh-----HHHHHH-----------HHHHhh---
Confidence 777777776555 455555666777788888888888877777777522 111111 111110
Q ss_pred hccccccccchHHHHHHHHHhCCCCh-hHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKG-VLYF---RQSLLLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWIL 648 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~-~~~~---~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~l 648 (714)
...|.-+ .+.| .-|..+..-|.+.+|+++|++|+..-+..+..+ +..|- -
T Consensus 306 -------------------~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~ 365 (960)
T KOG1938|consen 306 -------------------STKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-V 365 (960)
T ss_pred -------------------cCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-h
Confidence 0011111 1111 123445557889999999999999988755432 22222 2
Q ss_pred HhcCCHHHHHHHHHHHHhc--CCCHH--HHHHHHHHhhccCCCCCc-----------hhhHHHHHHHhhcCCCCcc
Q 005106 649 YDTSHCEEGLRKAEESIQM--KRSFE--AFFLKAYALADSSQDSSC-----------SSTVVSLLEDALKCPSDRL 709 (714)
Q Consensus 649 y~~G~~eeAl~~ye~Ai~i--~~~~~--a~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 709 (714)
|-+-.-|.|-..+++.+.. ..|.. ..|||=|.-.++-.=+.+ +..=+..+...=.||+|+.
T Consensus 366 y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e 441 (960)
T KOG1938|consen 366 YLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAE 441 (960)
T ss_pred hhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchh
Confidence 3334467777778887764 44444 788998888777554443 2233444555566777653
No 453
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.09 E-value=93 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 005106 484 YRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
++|.+|+++|+.+.|...++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.91 E-value=1e+02 Score=34.00 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
|+.+++.++..+|.+..+...+-.++..+|....|+..|+. +.+. .--+.++|...+.
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~-L~iK---~IQ~DTL~h~~~~ 259 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES-LDIK---NIQLDTLGHLILD 259 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh-cChH---HHHHHHhHHHHHH
Confidence 57899999999999999999999999999999999999853 3332 1234455555544
No 455
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=37.57 E-value=37 Score=28.87 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHh
Q 005106 652 SHCEEGLRKAEESIQ 666 (714)
Q Consensus 652 G~~eeAl~~ye~Ai~ 666 (714)
|+|++|+..|.++|.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
No 456
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.42 E-value=1.3e+02 Score=33.96 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL 448 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~ 448 (714)
.+...+++-.+.+=..++.-+.|+.|.....++.-. ..+..++++|++...+++|..|.+.+-.|+...|+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344445555566666777888999998888776533 234457789999999999999999999999999963
No 457
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.31 E-value=2.3e+02 Score=27.19 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 504 RILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 504 kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+.+++--..+....++.-....||+.-|....+.++..+|++.
T Consensus 62 ~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~ 104 (141)
T PF14863_consen 62 RYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE 104 (141)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH
Confidence 3334434455555566666677888888888888888888873
No 458
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=37.18 E-value=57 Score=27.70 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++.+...|+..-..|+|++|+.+|..||+.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555556666777777766666654
No 459
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.21 E-value=2.1e+02 Score=33.86 Aligned_cols=66 Identities=11% Similarity=-0.105 Sum_probs=43.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 469 ~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
++|+++.|+.. .|-.+..++||++.|.....++= +...|..+|.+-...|++..|.++|.+|-.+.
T Consensus 631 e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 631 EQALELSTDPD----QRFELALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred HhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 56666666543 35566677788877765433321 34556777777778888888888888776554
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.11 E-value=64 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
.++|.-....|++++|+..|+.|++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455556666666666665554
No 461
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=5.5e+02 Score=27.76 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHH------HhcCCHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK--QNVEAALAEINRILGFKL-ALECLELRFCFF------LALEDYQAAL 532 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l--~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~------~~lgd~e~Al 532 (714)
+.-+.-.+.++.-+|.+.+.|..|--++-.- .++.-=+..-++.|..|| ++.+|+.|-++. ..-.++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4445557888888899999999988887765 667777888888898888 578888877765 2233334445
Q ss_pred HHHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 005106 533 CDVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (714)
Q Consensus 533 ~d~~~al~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~ 610 (714)
++=.-+|+-||-+ .+..-|..... . |.+.++.-+..---.-|..+-+++-.+|.+...|+..
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~-------~---------~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIE-------R---------RFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHH-------H---------HHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 5555677778765 22222211000 0 0011111111000002667888889999998888654
No 462
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=34.63 E-value=7.8e+02 Score=28.48 Aligned_cols=217 Identities=11% Similarity=0.043 Sum_probs=138.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHh-----
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELR-FCFFLALEDYQAALCDVQAILT----- 540 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R-~~~~~~lgd~e~Al~d~~~al~----- 540 (714)
.|++++.--|-.++.|+.-..-+..-++-+.|+....++++.-|+ ++.+ ...|....|-++--.+|++.++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999988887 2222 2223333333333333443322
Q ss_pred ---hC----------CCchh--hhh-----------hHHHHHHHHHHHHhhhhhhHHHHHHhhh------------hccc
Q 005106 541 ---LS----------PDYRM--FEG-----------RVAASQLHMLVREHIDNWTIADCWLQLY------------DRWS 582 (714)
Q Consensus 541 ---L~----------P~~~~--~~~-----------~~~a~~~~~~l~~~~~~~~~A~~~~~l~------------~~~~ 582 (714)
++ |.+.. ..- .+.+......+..+..-+.++. ... -...
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r---k~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR---KEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh---ccCCCCcceeeeHHHHHHH
Confidence 11 11100 000 1111112222333333333331 111 0001
Q ss_pred cccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--CCHHHHHH
Q 005106 583 SVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT--SHCEEGLR 659 (714)
Q Consensus 583 ~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~--G~~eeAl~ 659 (714)
...|.. |-.+++-.+.-.|+++.+-+..=.-|.++|+-+.|...++++++.-.+..---.+--|+-|.. |+.-.+.+
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 113333 666899999999999988888888899999999999999988876555544556677777765 88888887
Q ss_pred HHHHHHhcCCCH--HHHHHHHHHhhccCCCCC
Q 005106 660 KAEESIQMKRSF--EAFFLKAYALADSSQDSS 689 (714)
Q Consensus 660 ~ye~Ai~i~~~~--~a~~~~~~~~~~~~~~~~ 689 (714)
.=++--.+-|.- .+-|+--|++-|+.+-|.
T Consensus 524 Le~rf~e~~pQen~~evF~Sry~ik~da~~~~ 555 (660)
T COG5107 524 LEERFRELVPQENLIEVFTSRYAIKADAILPP 555 (660)
T ss_pred HHHHHHHHcCcHhHHHHHHHHHhhhccccCCC
Confidence 777777775544 488888888887776554
No 463
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.60 E-value=1.4e+02 Score=24.94 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=9.8
Q ss_pred HhCCHHHHHHHHHHHH
Q 005106 427 IKGHKLWAYEKLNSVI 442 (714)
Q Consensus 427 ~~G~~~~A~~~~~~aI 442 (714)
..|++++|+..|..++
T Consensus 18 ~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 18 EDGNYEEALELYKEAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3477777777764333
No 464
>PF12854 PPR_1: PPR repeat
Probab=34.31 E-value=72 Score=22.42 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 478 LSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
+...|..+-..|.+.|+.++|+..|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356788899999999999999998875
No 465
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.96 E-value=57 Score=28.15 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=12.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
+|+.....|..++|+..|++++++
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHH
Confidence 333334446666666666665553
No 466
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.71 E-value=81 Score=21.53 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
+.-.++|..+|.+..+|..|--++..
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHHHH
Confidence 33456666777777777666555543
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.63 E-value=5.6e+02 Score=26.56 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=22.9
Q ss_pred hCCCChhH---HHHHHHHH-HHcCChHHHHHHHHHHHHhC
Q 005106 599 SDAPKGVL---YFRQSLLL-LRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 599 l~P~~~~~---~~~~g~~L-~~lg~~eeAl~~~~~Al~l~ 634 (714)
+.|.+|.- ..|.+..+ ..+|.+++|+...++|+.-.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45666542 23444444 44999999999999887654
No 468
>PF13041 PPR_2: PPR repeat family
Probab=31.87 E-value=1.8e+02 Score=21.74 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
...|+.+=..+.+.|++++|+..|++..+-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345666666777777777777777777764
No 469
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.78 E-value=97 Score=33.09 Aligned_cols=75 Identities=15% Similarity=0.042 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHH-------HHhcCCHHHHHHHHHHHHhc-C------CCHH-HHHHHHHHh
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWI-------LYDTSHCEEGLRKAEESIQM-K------RSFE-AFFLKAYAL 681 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-------ly~~G~~eeAl~~ye~Ai~i-~------~~~~-a~~~~~~~~ 681 (714)
+..-..-...|.+|+.+.+.-+.-+ -.|.+ ....|+|++|-..|=+|.+- + |..- -|...|-.|
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML 282 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML 282 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence 4444545667888888876544322 23444 56778999998888777763 1 1111 567777778
Q ss_pred hccCCCCCchh
Q 005106 682 ADSSQDSSCSS 692 (714)
Q Consensus 682 ~~~~~~~~~~~ 692 (714)
.-|.++|--|.
T Consensus 283 mkS~iNPFDsQ 293 (440)
T KOG1464|consen 283 MKSGINPFDSQ 293 (440)
T ss_pred HHcCCCCCccc
Confidence 88888886663
No 470
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.65 E-value=60 Score=27.75 Aligned_cols=27 Identities=15% Similarity=-0.057 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
+..+|.-+.+.|++++|+..|..|++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555556667777777777777664
No 471
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.31 E-value=5.4e+02 Score=33.01 Aligned_cols=158 Identities=21% Similarity=0.100 Sum_probs=82.8
Q ss_pred HHHHHhcCCCChHHHHH----HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 468 LDKATALDPTLSYPYMY----RASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~----rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
|..|+.|.-.+...|.. -|.-+++.+++++|.-.|.+.=++.- --.+|...|||.+|+.--. ++.+
T Consensus 924 y~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gklek-------Al~a~~~~~dWr~~l~~a~---ql~~ 993 (1265)
T KOG1920|consen 924 YDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEK-------ALKAYKECGDWREALSLAA---QLSE 993 (1265)
T ss_pred chhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHH-------HHHHHHHhccHHHHHHHHH---hhcC
Confidence 35555555555544444 45556667777777776666542211 1134566677777665432 2333
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
.-. .....|..+.+.+.+..+-.+.|.. +-+. +....+|+. +|.+-..+++|
T Consensus 994 ~~d--e~~~~a~~L~s~L~e~~kh~eAa~i---l~e~---------~sd~~~av~--------------ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 994 GKD--ELVILAEELVSRLVEQRKHYEAAKI---LLEY---------LSDPEEAVA--------------LLCKAKEWEEA 1045 (1265)
T ss_pred CHH--HHHHHHHHHHHHHHHcccchhHHHH---HHHH---------hcCHHHHHH--------------HHhhHhHHHHH
Confidence 221 1122346666666666666666642 1111 222333332 35556677888
Q ss_pred HHHHHHHH-------HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 624 MRSLQLAR-------QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 624 l~~~~~Al-------~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
++....+- .+.|. +.-.-|.++..+.+.-+-+..|.+=+.
T Consensus 1046 lrva~~~~~~d~iee~l~~a---l~e~~~~~~~~L~~~k~~f~~yk~RLl 1092 (1265)
T KOG1920|consen 1046 LRVASKAKRDDIIEEVLKPA---LLEAFGEVLEFLEDVKEQFVKYKKRLL 1092 (1265)
T ss_pred HHHHHhcccchHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776665 33333 444456666666666666666655443
No 472
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.04 E-value=7.7e+02 Score=27.33 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=37.2
Q ss_pred ChHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 478 LSYPYMY--RASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 478 ~~~ay~~--rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+...|.. +|.+-.++||..||+..++...+--|- ...+.|+-.++++++ |-+|.+.++.
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q----AYADvqavLa 335 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ----AYADVQAVLA 335 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3344444 577778899999999999888766663 233445545555554 4455555554
No 473
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.85 E-value=94 Score=23.67 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.++.+|..+|+.+.|-...++.++ +.+++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 4567777777777777777777773 44443
No 474
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=9.4e+02 Score=28.26 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=59.0
Q ss_pred CCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC--CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCC
Q 005106 475 DPTLSY-PYMYRASSLMTKQNVEAALAEINRILGF------KL--ALECLELRFCFFLALED-YQAALCDVQAILTLSPD 544 (714)
Q Consensus 475 dP~~~~-ay~~rg~~l~~l~r~~eAl~~~~kAL~l------~P--~~~~~~~R~~~~~~lgd-~e~Al~d~~~al~L~P~ 544 (714)
|+++.- -|.-+|.++..+|+...|-..|+.+++- +| -|.+++-+|.+|..+|- ..+|.....+|-+-..+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 555543 3455899999999999999999999832 34 26778889999999998 99999999999999888
Q ss_pred ch
Q 005106 545 YR 546 (714)
Q Consensus 545 ~~ 546 (714)
|.
T Consensus 524 Y~ 525 (546)
T KOG3783|consen 524 YE 525 (546)
T ss_pred cc
Confidence 73
No 475
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.30 E-value=1.2e+02 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHhCCCChh
Q 005106 620 PEAAMRSLQLARQHAASDHE 639 (714)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~e 639 (714)
++.|...|++++...|.+.+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 3 IERARKIYERALEKFPKSVE 22 (33)
T ss_pred HHHHHHHHHHHHHHCCCChH
Confidence 34444444444444444333
No 476
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.11 E-value=8.6e+02 Score=27.95 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=34.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER 455 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r 455 (714)
.........|++++|-+.+.-.++.++. .|+..+--.-...+++.+|+..+.-+.+.+-+.-..+-+|
T Consensus 527 ~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~R 601 (625)
T KOG4422|consen 527 CIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQR 601 (625)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 3444455667777777777665544221 1222222233445566666666655555444333333333
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.05 E-value=3e+02 Score=28.62 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhHhhHHHHHHHhCC
Q 005106 362 SDKTVCFLERLLESAETDRQRLL---AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSIAGLARLGYIKGH 430 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~---A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~a~~~lg~~~~~~G~ 430 (714)
+...+++|+.+........+.-+ ....+|..++..|+|++|.+.|+.+...-. ......+-.++...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34556677776554332222222 225789999999999999999999854411 2223345567777888
Q ss_pred HHHHHHH
Q 005106 431 KLWAYEK 437 (714)
Q Consensus 431 ~~~A~~~ 437 (714)
.+..+..
T Consensus 234 ~~~~l~~ 240 (247)
T PF11817_consen 234 VEDYLTT 240 (247)
T ss_pred HHHHHHH
Confidence 7776554
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.20 E-value=77 Score=27.37 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.|+.|.+.+++||..+ +.|+.++|+..|+++++
T Consensus 4 ~~~~A~~~I~kaL~~d--------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD--------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh--------------hcCCHHHHHHHHHHHHH
Confidence 3555666666665432 33566666666666555
No 479
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=5.1e+02 Score=28.17 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=71.8
Q ss_pred HhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-------------CCcHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-------------TPLGWMY 452 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~--------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~-------------p~~~~ay 452 (714)
...+.-++-++.++++|+. ....++.++|-.|.+.++.+.+.+++.+..+.. -.+|..|
T Consensus 86 ~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y 165 (412)
T COG5187 86 TLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY 165 (412)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh
Confidence 3344455556666666544 124577888899999999999988887666532 1355555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~---~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
.++.-. ++.++..+-.|+---+.- ..-.+.|.-.|.-.++.+|-.-+...+.
T Consensus 166 ~d~~vV---~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 166 GDRKVV---EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred ccHHHH---HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 555444 666766666676655442 1223457777888888888888877773
No 480
>PF13041 PPR_2: PPR repeat family
Probab=28.15 E-value=1.9e+02 Score=21.66 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCch
Q 005106 510 LALECLELRFCFFLALEDYQAALCDVQAILT--LSPDYR 546 (714)
Q Consensus 510 P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~--L~P~~~ 546 (714)
|+.-.|...-..|.+.|++++|.+-|++..+ +.|+-.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~ 39 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSY 39 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 5555566666788999999999999999888 457753
No 481
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.03 E-value=1.1e+02 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHHHHhc
Q 005106 639 ERLVYEGWILYDT----SHCEEGLRKAEESIQM 667 (714)
Q Consensus 639 ea~~~~G~~ly~~----G~~eeAl~~ye~Ai~i 667 (714)
++.+++|.+++.- .+.++|+..|++|...
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4667777776542 2778888888877654
No 482
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=27.42 E-value=1.2e+02 Score=21.17 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHhcc
Q 005106 398 EYDEAEHLFEAAVNAG 413 (714)
Q Consensus 398 ~y~eA~~~f~~AL~~~ 413 (714)
++++|..+|++|.+.+
T Consensus 23 d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHcc
Confidence 5788888888877654
No 483
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.30 E-value=1.7e+02 Score=26.70 Aligned_cols=47 Identities=15% Similarity=-0.037 Sum_probs=35.9
Q ss_pred HHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Q 005106 404 HLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW 450 (714)
Q Consensus 404 ~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ 450 (714)
+.++++=..+ |+-++..+|.+|.+.|+.+.|.+.|+.--.+.|..|.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3455543332 5667889999999999999999999988888887654
No 484
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.29 E-value=8.2e+02 Score=28.49 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=72.0
Q ss_pred HhcCCCcHHHHHHHHhcCCh-hHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 442 ISSVTPLGWMYQERSLYCEG-DKRWEDLDKATA---LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL 517 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~~~~~-~eAl~d~~kAi~---LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~ 517 (714)
|.+=|.++..|+.||.|+-. -.|.+.|++=+. -||.+..++---.. -+||=+|+--.+++|++
T Consensus 392 ~~lPpaL~~~W~~rGYyGSvshNarAVy~rYlG~yD~NPa~L~P~~p~d~----a~ryV~amGGadrVl~l--------- 458 (655)
T COG2015 392 IQLPPALAREWYTRGYYGSVSHNARAVYNRYLGYYDGNPANLHPLPPVDS----AKRYVEAMGGADRVLEL--------- 458 (655)
T ss_pred hcCChHHHHhHhhcCccccccccHHHHHHHHhccccCCccccCCCChhHh----HHHHHHHhccHHHHHHH---------
Confidence 34456678888888877654 444444555443 23333222211111 12344555555555533
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
+.--...|+|-=+-...++++--+|++ ..+..++....+++....+...|-+.|-.
T Consensus 459 -a~ea~~kGdyrW~a~lln~~VfAdp~n------~~Ar~L~Ad~lEQLgYqaE~A~wRn~yLt 514 (655)
T COG2015 459 -AREAFDKGDYRWAAELLNQAVFADPGN------KAARELQADALEQLGYQAESATWRNFYLT 514 (655)
T ss_pred -HHHHHhcccchHHHHHHhhHHhcCCcc------HHHHHHHHhHHHHhhhhhccchhhhhHHH
Confidence 233356788988999999999999998 55777777777777777777777665543
No 485
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=25.68 E-value=1.5e+02 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHH
Q 005106 625 RSLQLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~l 648 (714)
.....++..+|.|-.+..+|-|++
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHH
Confidence 334444444444444444444444
No 486
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.35 E-value=1.2e+02 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
.+|+..-.+++.+||-+...|.-+-.+|+.+|+--+|+..|+|-
T Consensus 296 neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 296 NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 77888888899999999999999999999999988888777664
No 487
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=24.88 E-value=1.1e+02 Score=33.37 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
++-.|...-+.|..-+|+..|+.|+.|.|+.| +|.
T Consensus 22 l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 22 LYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 33334444556777788888888888888888 666
No 488
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.15 E-value=3e+02 Score=25.33 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH-H--------HHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN-R--------ILGFKLALECLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~-k--------AL~l~P~~~~~~~R~~~~~~lgd~e~Al 532 (714)
...+..++..+.-+|.++..+..+..+|.+. +....+..++ . |+.+-.....+.....+|.+.|++++|+
T Consensus 24 ~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al 102 (140)
T smart00299 24 EELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAI 102 (140)
T ss_pred HHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHH
Confidence 5555556666666665555555555555543 2334444444 1 1111111111222334566667776666
Q ss_pred HHH
Q 005106 533 CDV 535 (714)
Q Consensus 533 ~d~ 535 (714)
.-+
T Consensus 103 ~~~ 105 (140)
T smart00299 103 VTL 105 (140)
T ss_pred HHH
Confidence 643
No 489
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=23.95 E-value=1.9e+02 Score=27.74 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
-++.-..++......|++.-|....+.++..+|+|.++..-+..+|-.+|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34455556666677788888888888888888888888877777777666543
No 490
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=23.71 E-value=5.4e+02 Score=27.58 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
+.|..++.+|++++|..+.|+..+-.+--.+|.
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 555666666666666666666665555554443
No 491
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=23.65 E-value=1.3e+03 Score=27.39 Aligned_cols=214 Identities=16% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.....|...+.-++.+|..++|...+..-+...- ......++.+|..+=+|..-....-+-.++.-.+. +..++...
T Consensus 130 ~~~~~V~LE~al~ll~qG~ie~~~~~lt~~~~~~~-~~~~~pl~~~~~GL~~Y~~W~~~lpe~~q~~~~d~-~~~~m~~~ 207 (547)
T PF14929_consen 130 EEKLAVSLEHALFLLSQGNIEEAAYQLTIYLEQSR-QFDWEPLINAYHGLISYRLWYSKLPEEMQLEDFDR-YGSKMSST 207 (547)
T ss_pred hhhhHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHHhccHHHhhccccch-hhhccccc
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-----------hhHHHHHHHHHHHcCChHHHH
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-----------GVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~-----------~~~~~~~g~~L~~lg~~eeAl 624 (714)
.....+.. ....+..+--+..+....+.. +.+|-..|+- .+-...-...+..-+..+++.
T Consensus 208 ~~~~~v~~-~~~~~s~~~d~~~~s~~~s~s--------e~sI~~~~gv~~~~~~~~d~~id~~lk~~~~~~f~~~qee~~ 278 (547)
T PF14929_consen 208 SFSNTVGQ-SERYNSMSSDMVSSSWQASDS--------ESSIMNIPGVNTLQMRNIDVKIDEFLKSVEMLEFYQPQEEYR 278 (547)
T ss_pred cccccccc-ccchhhHHHHhhhhhhhcccc--------HHHHhcCcCcccccccccccccchHhhhhhcccCCCcHHHHH
Q ss_pred HHHHHHHHhCCCCh-----hHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCC
Q 005106 625 RSLQLARQHAASDH-----ERLVYEGWILYDT-------------SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (714)
Q Consensus 625 ~~~~~Al~l~P~~~-----ea~~~~G~~ly~~-------------G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~ 686 (714)
......-+-.|+++ ++|.+.--.+ +. |+.+||+...|+-..--+..-.+.+||-.|. ..
T Consensus 279 ~~~s~~~ek~~s~p~~~~fn~yk~a~KYL-R~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle--~~ 355 (547)
T PF14929_consen 279 ESLSNYAEKFPSNPGRSIFNAYKYAVKYL-RLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLE--YF 355 (547)
T ss_pred HHHhhccccccCccccchhHHHHHHHHHH-HHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHHHHH--Hh
Q ss_pred CCCchhhHHHHHHHhhc
Q 005106 687 DSSCSSTVVSLLEDALK 703 (714)
Q Consensus 687 ~~~~~~~~~~~~~~~~~ 703 (714)
|.+-+++.++-+|+.++
T Consensus 356 d~~~~~~l~~~~e~~~~ 372 (547)
T PF14929_consen 356 DQNNSSVLSSCLEDCLK 372 (547)
T ss_pred CcccHHHHHHHHHHHhc
No 492
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.62 E-value=2.7e+02 Score=27.33 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 522 FLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 522 ~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+...|+|+.|+.+|.+|-.+--++
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHh
Confidence 567889999999998888765443
No 493
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.99 E-value=5.4e+02 Score=23.09 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH--HHHHHHhCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL--ARLGYIKGH 430 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~l--g~~~~~~G~ 430 (714)
+.......|...+..|++..|++...++-+..+.....++ +++-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4455567899999999999999999999777444443333 445555554
No 494
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=1.1e+03 Score=26.33 Aligned_cols=183 Identities=19% Similarity=0.147 Sum_probs=105.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cC-----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CchhhhhhHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILG-FK-----LA-LECLELRFCFFLALEDYQAALCDVQAILTLSP-DYRMFEGRVAA 554 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~-l~-----P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P-~~~~~~~~~~a 554 (714)
..+..+|.+.++|.+|++-.+..+. ++ +. .+.+..=.-+|..+.+...|.+....|-+..- -|-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp------- 204 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP------- 204 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-------
Confidence 5688899999999999998877664 21 11 23223334578888888999888888776432 1211
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC---ChhHHH---HHHHHHHHcCChHH--HHH
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP---KGVLYF---RQSLLLLRLNCPEA--AMR 625 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~---~~~~~~---~~g~~L~~lg~~ee--Al~ 625 (714)
-++++.++.+-.-.-.++ .|++ |-+.|..|++-.-. ++.+.. .+=++-..+|.+++ ++-
T Consensus 205 PqlQa~lDLqSGIlha~e------------kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAE------------KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecc------------cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 112222222211111111 3333 45555555543211 122222 22234455777774 455
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC
Q 005106 626 SLQLARQHAASDHERLVYEGWILY--DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~~ly--~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~ 687 (714)
....+++.+..+-+|+-..+.+.- .+.+|+.|++.|..-+.-+|=...-+. .|+|+-|+
T Consensus 273 s~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~---~Lyd~lLE 333 (411)
T KOG1463|consen 273 SAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ---SLYDNLLE 333 (411)
T ss_pred hhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH---HHHHHHHH
Confidence 556677777777777666555543 356899999999999998886665443 34454443
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.71 E-value=3.1e+02 Score=32.42 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWIL 648 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~-~~ea~~~~G~~l 648 (714)
+.=.-+.+-||+.-|.+.....+.++|. |+.+..++=-++
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 3344556699999999999999999999 887765554443
No 496
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=21.88 E-value=1.2e+03 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005106 652 SHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 652 G~~eeAl~~ye~Ai~i~~ 669 (714)
.|+.+|+...|+|+++..
T Consensus 299 ahl~~a~~~~eea~r~~~ 316 (384)
T cd09248 299 AHLKRAILGQEEALRLHA 316 (384)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 577888999998888764
No 497
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=21.80 E-value=2.9e+02 Score=27.98 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHH-HH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALEC-LE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~-~~-~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
.+.-|-.+.+. .+-..|+..|.+||..+| ++.. .. .+.++.....|---.+..|+-+...||.- +...
T Consensus 100 ~H~qRV~a~Ln-erkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~--------A~~~ 170 (193)
T PF12925_consen 100 THQQRVQAMLN-ERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEE--------AAQI 170 (193)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHH--------HHHh
Confidence 34444444443 245678888888888765 4332 22 23455666667777888899999999874 3444
Q ss_pred HHHHHHhhhhhhHH
Q 005106 558 HMLVREHIDNWTIA 571 (714)
Q Consensus 558 ~~~l~~~~~~~~~A 571 (714)
+..+...+...+..
T Consensus 171 k~~vl~hL~~Id~r 184 (193)
T PF12925_consen 171 KPQVLTHLRVIDER 184 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 498
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=21.39 E-value=1.1e+02 Score=34.96 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~ 686 (714)
|..+=.++.+.|..+.|+++.-.-+--+|++-++..|+-|..-.+|.-+..+.+.|+ ...+++|.||.-+.+.+-
T Consensus 136 y~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~DlE~-----~~~~~~Fir~v~~y~~~d 210 (471)
T KOG4459|consen 136 YQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELTDLER-----REHEQWFIRGVRLYSGED 210 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccccccccc-----chHHHHHHHHhhhccccC
Confidence 555677899999999999999999999999999999999888888888877755443 567799999999977665
Q ss_pred CCCchhhHHHHHHHhh
Q 005106 687 DSSCSSTVVSLLEDAL 702 (714)
Q Consensus 687 ~~~~~~~~~~~~~~~~ 702 (714)
+..|-. .+|.||
T Consensus 211 ~~~~v~----~ve~AL 222 (471)
T KOG4459|consen 211 PRQCVP----EVELAL 222 (471)
T ss_pred chhcch----hHHHHH
Confidence 444444 556665
No 499
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.86 E-value=1.7e+02 Score=27.31 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~ 514 (714)
..+|..++..|++++|+..|-+||..-|+|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 45888999999999999999999999888753
No 500
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.06 E-value=1.1e+03 Score=25.48 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=100.7
Q ss_pred HHhcCCCChHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005106 471 ATALDPTLSYPYMYRASSLMT--------KQNVEAALAEINRILGFKLA-LECLELRFCFFLAL--EDYQAALCDVQAIL 539 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~--------l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l--gd~e~Al~d~~~al 539 (714)
.+.-+|.+...|++|-.+... ..-.+.-+.-...++.-+|. ...|+.|-+++..- .++..=+.--.+.+
T Consensus 58 lid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkkll 137 (328)
T COG5536 58 LIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLL 137 (328)
T ss_pred HHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHh
Confidence 445556666666666555543 12234455567788888895 88999998876655 67777788889999
Q ss_pred hhCCCchhh-hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHH---HHHH
Q 005106 540 TLSPDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQ---SLLL 614 (714)
Q Consensus 540 ~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~---g~~L 614 (714)
+.||.|... .=|+-.... .+.+ ....++. -+..-.-.|+.||.|..+|.++ =...
T Consensus 138 d~DsrNyH~W~YR~~vl~~----------ie~~----------~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 138 DSDSRNYHVWSYRRWVLRT----------IEDL----------FNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred cccccccceeeeEeeeeec----------chhh----------ccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 999987431 101111100 0000 0000000 1445567799999999999888 3333
Q ss_pred HHcCC------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 615 LRLNC------PEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 615 ~~lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
..-|. .++=+...-.++-.+|++-.+..++-|+.-.
T Consensus 198 ~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 198 FNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 33332 4566777888999999999999998887544
Done!