Query 005106
Match_columns 714
No_of_seqs 502 out of 2390
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 9.7E-33 3.3E-37 297.4 34.9 319 362-683 49-385 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-31 1.3E-35 285.0 40.0 330 362-704 15-368 (388)
3 3hve_A Gigaxonin; ubiquitin, c 100.0 1.9E-31 6.6E-36 276.8 16.0 200 175-384 25-237 (256)
4 3ieg_A DNAJ homolog subfamily 100.0 5.8E-28 2E-32 252.9 40.6 303 361-679 18-348 (359)
5 3hym_B Cell division cycle pro 100.0 9.9E-29 3.4E-33 256.6 34.3 276 385-684 24-317 (330)
6 2y4t_A DNAJ homolog subfamily 100.0 5.5E-28 1.9E-32 263.9 37.9 304 361-680 41-372 (450)
7 3i3n_A Kelch-like protein 11; 100.0 2.8E-31 9.5E-36 279.1 10.0 200 175-382 26-243 (279)
8 3ieg_A DNAJ homolog subfamily 100.0 1.8E-27 6.2E-32 249.1 38.8 294 383-704 3-335 (359)
9 2y4t_A DNAJ homolog subfamily 100.0 3.8E-27 1.3E-31 257.2 36.5 295 382-704 25-358 (450)
10 2h6f_A Protein farnesyltransfe 100.0 8E-29 2.7E-33 272.0 22.8 250 415-684 97-366 (382)
11 2xpi_A Anaphase-promoting comp 100.0 1.1E-26 3.8E-31 263.3 35.7 293 364-684 290-597 (597)
12 4g1t_A Interferon-induced prot 100.0 9.4E-27 3.2E-31 256.5 33.0 319 347-672 53-406 (472)
13 1fch_A Peroxisomal targeting s 100.0 1.3E-27 4.5E-32 253.4 25.1 271 392-685 34-344 (368)
14 1fch_A Peroxisomal targeting s 100.0 8.1E-27 2.8E-31 247.3 26.8 260 383-667 64-359 (368)
15 3fp2_A TPR repeat-containing p 100.0 2E-26 6.7E-31 257.0 30.7 304 350-682 30-429 (537)
16 2gw1_A Mitochondrial precursor 100.0 1.5E-26 5.1E-31 255.7 29.2 335 361-703 21-477 (514)
17 4eqf_A PEX5-related protein; a 100.0 6.8E-27 2.3E-31 249.2 24.1 260 383-666 65-355 (365)
18 4eqf_A PEX5-related protein; a 99.9 1.6E-26 5.6E-31 246.3 25.3 245 416-682 66-338 (365)
19 2h6f_A Protein farnesyltransfe 99.9 1.5E-26 5.2E-31 253.8 25.7 245 382-651 96-366 (382)
20 3fp2_A TPR repeat-containing p 99.9 9.8E-26 3.4E-30 251.4 31.8 278 397-699 216-529 (537)
21 2gw1_A Mitochondrial precursor 99.9 7.9E-26 2.7E-30 249.9 30.3 275 383-682 186-494 (514)
22 3cv0_A Peroxisome targeting si 99.9 2.8E-26 9.7E-31 237.8 25.1 263 383-669 21-317 (327)
23 4g1t_A Interferon-induced prot 99.9 1.8E-25 6.3E-30 246.2 31.4 266 383-672 51-368 (472)
24 2xpi_A Anaphase-promoting comp 99.9 5.4E-25 1.8E-29 249.5 34.7 289 387-703 276-578 (597)
25 3hym_B Cell division cycle pro 99.9 4.1E-25 1.4E-29 229.3 29.7 275 361-656 37-323 (330)
26 2pl2_A Hypothetical conserved 99.9 1.8E-25 6.2E-30 224.2 21.9 179 462-665 22-212 (217)
27 3htm_A Speckle-type POZ protei 99.9 3.3E-26 1.1E-30 222.5 13.1 143 175-321 28-170 (172)
28 3cv0_A Peroxisome targeting si 99.9 2.1E-24 7.3E-29 223.6 27.0 246 416-685 22-300 (327)
29 3uq3_A Heat shock protein STI1 99.9 2.3E-24 7.7E-29 215.7 25.8 238 382-676 4-252 (258)
30 3mkr_A Coatomer subunit epsilo 99.9 9E-24 3.1E-28 222.4 28.9 249 393-672 9-269 (291)
31 2pl2_A Hypothetical conserved 99.9 5.3E-24 1.8E-28 213.5 25.3 186 475-685 1-199 (217)
32 3u4t_A TPR repeat-containing p 99.9 2.6E-24 8.9E-29 218.6 23.3 231 384-672 4-255 (272)
33 3u4t_A TPR repeat-containing p 99.9 1.4E-23 4.9E-28 213.1 25.5 238 361-652 18-269 (272)
34 4a1s_A PINS, partner of inscut 99.9 4.7E-24 1.6E-28 230.3 22.4 291 381-689 46-394 (411)
35 3uq3_A Heat shock protein STI1 99.9 2.4E-23 8.2E-28 208.2 25.9 231 350-647 10-256 (258)
36 3vtx_A MAMA; tetratricopeptide 99.9 1.5E-23 5.2E-28 202.0 22.1 174 477-674 3-177 (184)
37 3sf4_A G-protein-signaling mod 99.9 5.5E-24 1.9E-28 227.4 20.0 285 383-685 9-361 (406)
38 3ro2_A PINS homolog, G-protein 99.9 2.1E-23 7.3E-28 214.9 20.6 271 383-671 5-336 (338)
39 3hqi_A Speckle-type POZ protei 99.9 3.3E-24 1.1E-28 228.5 14.0 142 175-320 168-309 (312)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.2E-23 1.1E-27 210.2 20.0 245 389-661 11-269 (275)
41 4eoz_A Speckle-type POZ protei 99.9 9.4E-25 3.2E-29 206.3 5.3 126 175-304 19-144 (145)
42 4abn_A Tetratricopeptide repea 99.9 1.7E-22 5.8E-27 227.0 23.2 213 428-664 81-318 (474)
43 1ouv_A Conserved hypothetical 99.9 3.2E-21 1.1E-25 197.8 30.1 233 382-677 5-261 (273)
44 2q7f_A YRRB protein; TPR, prot 99.9 6.8E-22 2.3E-26 196.6 22.7 206 448-680 29-236 (243)
45 4gyw_A UDP-N-acetylglucosamine 99.9 1.2E-22 4E-27 240.0 19.7 175 474-672 4-179 (723)
46 2vkp_A BTB/POZ domain-containi 99.9 5E-23 1.7E-27 185.4 11.2 103 176-282 3-109 (109)
47 3vtx_A MAMA; tetratricopeptide 99.9 7.8E-22 2.7E-26 189.9 20.0 164 383-546 5-175 (184)
48 3mkr_A Coatomer subunit epsilo 99.9 6.3E-21 2.2E-25 200.7 27.1 244 384-661 35-288 (291)
49 4abn_A Tetratricopeptide repea 99.9 2.2E-21 7.4E-26 218.0 24.9 197 462-683 85-304 (474)
50 2ond_A Cleavage stimulation fa 99.9 7.3E-21 2.5E-25 200.3 26.9 231 400-670 33-273 (308)
51 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.4E-21 8.3E-26 196.2 22.1 222 424-671 14-248 (275)
52 2q7f_A YRRB protein; TPR, prot 99.9 2.7E-21 9.2E-26 192.2 21.5 218 382-653 22-242 (243)
53 2if5_A Zinc finger and BTB dom 99.9 1.1E-22 3.7E-27 186.6 9.9 101 175-278 19-119 (120)
54 3sf4_A G-protein-signaling mod 99.9 2.1E-21 7.1E-26 207.3 19.4 294 361-672 24-382 (406)
55 1r29_A B-cell lymphoma 6 prote 99.9 2.8E-22 9.6E-27 185.8 10.2 102 175-280 23-125 (127)
56 4i17_A Hypothetical protein; T 99.9 1.3E-20 4.3E-25 188.1 21.6 168 460-678 22-221 (228)
57 2ho1_A Type 4 fimbrial biogene 99.9 5.3E-20 1.8E-24 184.9 26.0 188 462-673 54-244 (252)
58 2z8h_A Transcription regulator 99.9 1.9E-22 6.4E-27 190.0 6.7 108 175-287 30-137 (138)
59 2xm6_A Protein corresponding t 99.9 1E-18 3.6E-23 195.6 38.4 318 362-702 59-430 (490)
60 4a1s_A PINS, partner of inscut 99.9 6.3E-21 2.2E-25 205.7 19.1 266 416-703 49-371 (411)
61 2ppi_A Gigaxonin; BTB domain, 99.9 4.5E-22 1.5E-26 189.0 8.6 102 175-279 41-144 (144)
62 2xm6_A Protein corresponding t 99.9 2.7E-18 9.1E-23 192.2 40.5 288 363-672 96-437 (490)
63 3dra_A Protein farnesyltransfe 99.9 6.8E-20 2.3E-24 195.2 26.1 227 432-682 50-304 (306)
64 3b84_A Zinc finger and BTB dom 99.9 3.8E-22 1.3E-26 183.1 6.7 99 175-280 18-116 (119)
65 2vq2_A PILW, putative fimbrial 99.9 2E-19 6.7E-24 175.9 26.5 200 415-672 8-216 (225)
66 3dss_A Geranylgeranyl transfer 99.8 4.3E-20 1.5E-24 198.4 23.1 224 462-712 47-310 (331)
67 2ond_A Cleavage stimulation fa 99.8 4.7E-20 1.6E-24 194.1 22.5 247 365-680 35-306 (308)
68 4gyw_A UDP-N-acetylglucosamine 99.8 8.6E-21 3E-25 224.0 18.6 164 382-545 8-178 (723)
69 2vpk_A Myoneurin; transcriptio 99.8 1.3E-21 4.4E-26 178.5 8.6 100 175-279 16-115 (116)
70 1buo_A POZ domain, protein (pr 99.8 1.9E-21 6.3E-26 178.9 9.7 100 175-282 22-121 (121)
71 2ho1_A Type 4 fimbrial biogene 99.8 2.8E-19 9.4E-24 179.6 26.5 209 382-644 36-249 (252)
72 2vq2_A PILW, putative fimbrial 99.8 4.6E-19 1.6E-23 173.3 27.4 206 382-645 7-223 (225)
73 4i17_A Hypothetical protein; T 99.8 7.7E-20 2.6E-24 182.4 21.7 202 417-649 9-225 (228)
74 2yy9_A Zinc finger and BTB dom 99.8 8.4E-22 2.9E-26 185.0 6.1 102 175-283 19-120 (135)
75 2pzi_A Probable serine/threoni 99.8 1.2E-20 3.9E-25 221.7 16.8 198 443-665 388-596 (681)
76 1qqe_A Vesicular transport pro 99.8 2.5E-20 8.4E-25 195.2 17.3 182 479-678 77-280 (292)
77 2ihc_A Transcription regulator 99.8 3.4E-22 1.2E-26 184.7 1.4 101 175-279 23-123 (124)
78 3ro2_A PINS homolog, G-protein 99.8 4E-20 1.4E-24 190.4 16.6 266 417-704 7-332 (338)
79 3ohu_A Transcription regulator 99.8 5.5E-22 1.9E-26 183.3 1.5 100 175-278 26-125 (125)
80 2pzi_A Probable serine/threoni 99.8 5.6E-20 1.9E-24 215.8 18.7 183 473-683 388-580 (681)
81 2q81_A MIZ-1 protein; BTB/POZ 99.8 4.3E-21 1.5E-25 176.1 6.1 97 175-279 21-117 (119)
82 3ga1_A Nucleus accumbens-assoc 99.8 2.4E-21 8.2E-26 180.2 3.9 101 175-281 27-127 (129)
83 3nf1_A KLC 1, kinesin light ch 99.8 1.1E-19 3.7E-24 186.8 16.5 247 381-670 25-310 (311)
84 1hz4_A MALT regulatory protein 99.8 1.8E-18 6.1E-23 185.1 26.5 271 383-671 14-326 (373)
85 3dra_A Protein farnesyltransfe 99.8 1.1E-18 3.8E-23 185.8 24.2 229 396-648 46-303 (306)
86 3e4b_A ALGK; tetratricopeptide 99.8 1E-18 3.6E-23 195.0 24.4 282 384-683 36-366 (452)
87 1ouv_A Conserved hypothetical 99.8 2.5E-17 8.6E-22 168.6 30.7 208 462-703 23-250 (273)
88 3dss_A Geranylgeranyl transfer 99.8 1.4E-17 4.7E-22 178.9 29.4 202 462-676 91-313 (331)
89 3urz_A Uncharacterized protein 99.8 1.1E-18 3.9E-23 173.4 19.5 172 478-674 3-193 (208)
90 3ulq_A Response regulator aspa 99.8 1.3E-18 4.4E-23 187.7 21.2 230 387-670 107-371 (383)
91 3nf1_A KLC 1, kinesin light ch 99.8 1.3E-19 4.3E-24 186.3 12.4 233 415-703 27-306 (311)
92 3qky_A Outer membrane assembly 99.8 4.1E-18 1.4E-22 173.9 23.3 182 470-672 6-229 (261)
93 3m5b_A Zinc finger and BTB dom 99.8 3.7E-20 1.3E-24 170.2 7.3 94 175-280 24-117 (119)
94 1dce_A Protein (RAB geranylger 99.8 1.1E-19 3.8E-24 209.1 13.0 186 462-671 46-271 (567)
95 4ga2_A E3 SUMO-protein ligase 99.8 1.6E-19 5.6E-24 170.7 11.5 145 448-653 3-149 (150)
96 3urz_A Uncharacterized protein 99.8 1.1E-18 3.8E-23 173.5 17.0 163 383-545 4-190 (208)
97 1qqe_A Vesicular transport pro 99.8 2.2E-18 7.4E-23 180.4 19.8 207 434-672 4-233 (292)
98 2ooe_A Cleavage stimulation fa 99.8 5.7E-17 2E-21 183.2 32.6 314 361-706 27-457 (530)
99 4ga2_A E3 SUMO-protein ligase 99.8 2.4E-19 8.2E-24 169.6 10.8 144 484-685 2-148 (150)
100 4gco_A Protein STI-1; structur 99.8 8.1E-19 2.8E-23 161.4 13.9 122 469-648 3-125 (126)
101 3qky_A Outer membrane assembly 99.8 2.4E-18 8.2E-23 175.6 18.1 69 590-658 168-252 (261)
102 2ooe_A Cleavage stimulation fa 99.8 7.4E-16 2.5E-20 174.1 39.9 186 462-670 255-457 (530)
103 3as5_A MAMA; tetratricopeptide 99.8 7.5E-18 2.6E-22 158.9 19.4 170 479-672 8-178 (186)
104 3ulq_A Response regulator aspa 99.8 7.9E-18 2.7E-22 181.5 22.2 232 348-636 106-371 (383)
105 2r5s_A Uncharacterized protein 99.8 1.7E-18 5.7E-23 167.0 14.8 168 475-666 2-172 (176)
106 3e4b_A ALGK; tetratricopeptide 99.8 1.5E-17 5E-22 185.7 24.6 318 363-703 55-420 (452)
107 3q15_A PSP28, response regulat 99.8 2.4E-17 8.3E-22 177.8 23.8 236 381-670 99-368 (378)
108 3fkc_A Transcriptional regulat 99.8 4.6E-19 1.6E-23 162.0 8.7 91 175-272 25-115 (116)
109 3qou_A Protein YBBN; thioredox 99.8 1.1E-17 3.8E-22 175.1 19.8 168 475-666 113-283 (287)
110 3edt_B KLC 2, kinesin light ch 99.8 2.5E-18 8.4E-23 173.4 13.8 203 417-668 45-282 (283)
111 2vsy_A XCC0866; transferase, g 99.7 2.3E-17 7.9E-22 188.2 19.1 161 460-678 4-169 (568)
112 3as5_A MAMA; tetratricopeptide 99.7 8.7E-17 3E-21 151.6 18.8 166 382-547 7-179 (186)
113 3q7a_A Farnesyltransferase alp 99.7 1.8E-16 6E-21 171.2 23.7 178 461-654 70-258 (349)
114 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.1E-17 1.1E-21 164.6 16.6 202 383-671 4-217 (225)
115 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.8E-16 6.3E-21 159.0 22.2 99 590-709 116-218 (225)
116 4gco_A Protein STI-1; structur 99.7 3.3E-17 1.1E-21 150.7 14.8 121 503-681 3-125 (126)
117 1p5q_A FKBP52, FK506-binding p 99.7 4.2E-19 1.4E-23 190.5 2.3 148 462-667 130-294 (336)
118 3q7a_A Farnesyltransferase alp 99.7 2.9E-17 1E-21 177.3 16.0 191 471-685 46-256 (349)
119 1hz4_A MALT regulatory protein 99.7 2.1E-15 7E-20 161.3 28.3 302 349-678 18-360 (373)
120 2ifu_A Gamma-SNAP; membrane fu 99.7 6.5E-17 2.2E-21 170.4 16.0 206 395-671 3-227 (307)
121 4f3v_A ESX-1 secretion system 99.7 1.2E-17 4.2E-22 175.2 10.1 200 459-688 20-254 (282)
122 3gyz_A Chaperone protein IPGC; 99.7 3.6E-17 1.2E-21 156.2 10.9 68 605-672 71-138 (151)
123 2ifu_A Gamma-SNAP; membrane fu 99.7 5.5E-17 1.9E-21 170.9 13.4 183 428-682 4-206 (307)
124 2r5s_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 153.9 14.6 155 385-540 8-172 (176)
125 1dce_A Protein (RAB geranylger 99.7 3.4E-16 1.2E-20 180.1 18.9 174 488-685 37-240 (567)
126 3gyz_A Chaperone protein IPGC; 99.7 1E-16 3.4E-21 153.0 10.9 114 467-638 24-138 (151)
127 1p5q_A FKBP52, FK506-binding p 99.7 3.7E-18 1.2E-22 183.2 0.8 177 462-683 82-276 (336)
128 2c2l_A CHIP, carboxy terminus 99.7 1.8E-16 6E-21 165.6 11.6 220 460-709 19-251 (281)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.8E-15 1.3E-19 145.9 18.6 143 480-682 7-166 (213)
130 2vsy_A XCC0866; transferase, g 99.6 2.9E-15 9.8E-20 170.9 20.2 159 429-645 3-169 (568)
131 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.1E-17 7.3E-22 184.8 2.3 188 397-660 200-407 (457)
132 3rjv_A Putative SEL1 repeat pr 99.6 7.7E-15 2.6E-19 146.4 20.3 186 400-677 3-207 (212)
133 2vgx_A Chaperone SYCD; alterna 99.6 2E-15 6.9E-20 142.4 14.9 122 467-646 9-131 (148)
134 2hr2_A Hypothetical protein; a 99.6 5.9E-16 2E-20 148.9 10.8 114 479-643 11-141 (159)
135 3qou_A Protein YBBN; thioredox 99.6 2.7E-15 9.1E-20 156.9 16.8 158 383-540 117-283 (287)
136 1xi4_A Clathrin heavy chain; a 99.6 2.3E-13 7.7E-18 165.8 34.1 241 421-684 1055-1327(1630)
137 3q15_A PSP28, response regulat 99.6 2.2E-14 7.5E-19 154.6 21.5 226 417-685 103-350 (378)
138 2xcb_A PCRH, regulatory protei 99.6 2.1E-15 7.3E-20 140.1 11.7 127 466-650 5-132 (142)
139 2vgx_A Chaperone SYCD; alterna 99.6 9.4E-15 3.2E-19 137.8 15.4 115 500-672 8-123 (148)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.8E-17 1.3E-21 182.8 -1.6 150 491-683 246-397 (457)
141 2hr2_A Hypothetical protein; a 99.6 5.1E-15 1.7E-19 142.4 12.1 107 382-511 10-134 (159)
142 2fo7_A Synthetic consensus TPR 99.6 6E-14 2E-18 124.4 18.1 133 480-670 2-135 (136)
143 4f3v_A ESX-1 secretion system 99.6 6.1E-15 2.1E-19 154.7 13.4 205 386-644 10-247 (282)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2E-14 6.9E-19 140.7 15.9 134 382-546 5-155 (213)
145 3edt_B KLC 2, kinesin light ch 99.6 2.5E-14 8.6E-19 143.9 16.3 218 462-704 18-281 (283)
146 2xcb_A PCRH, regulatory protei 99.6 9.4E-15 3.2E-19 135.7 11.6 115 500-672 5-120 (142)
147 1xi4_A Clathrin heavy chain; a 99.6 1.6E-12 5.6E-17 158.4 33.3 254 383-658 1105-1375(1630)
148 1a17_A Serine/threonine protei 99.6 8.9E-14 3E-18 129.6 17.1 132 479-668 13-147 (166)
149 3upv_A Heat shock protein STI1 99.6 4.7E-14 1.6E-18 127.3 14.7 116 476-649 1-123 (126)
150 3sz7_A HSC70 cochaperone (SGT) 99.6 5E-14 1.7E-18 133.5 15.0 119 474-650 6-125 (164)
151 2fbn_A 70 kDa peptidylprolyl i 99.5 8.7E-15 3E-19 143.2 8.4 168 448-685 10-194 (198)
152 2c2l_A CHIP, carboxy terminus 99.5 5E-14 1.7E-18 146.9 14.4 168 476-672 1-169 (281)
153 3sz7_A HSC70 cochaperone (SGT) 99.5 7.9E-14 2.7E-18 132.1 14.3 114 512-683 11-125 (164)
154 2fo7_A Synthetic consensus TPR 99.5 5.2E-13 1.8E-17 118.3 17.6 125 420-544 6-135 (136)
155 3rjv_A Putative SEL1 repeat pr 99.5 3.1E-13 1.1E-17 134.7 17.9 161 382-545 17-201 (212)
156 4gcn_A Protein STI-1; structur 99.5 8.5E-14 2.9E-18 127.6 12.6 113 477-641 6-119 (127)
157 2qfc_A PLCR protein; TPR, HTH, 99.5 7E-13 2.4E-17 138.0 20.3 179 475-671 71-270 (293)
158 2lni_A Stress-induced-phosphop 99.5 2.7E-13 9.2E-18 121.2 14.9 122 474-653 11-133 (133)
159 2vyi_A SGTA protein; chaperone 99.5 1.8E-13 6.3E-18 121.2 13.5 126 472-655 5-131 (131)
160 2ast_A S-phase kinase-associat 99.5 8.2E-14 2.8E-18 134.3 11.7 107 184-294 3-140 (159)
161 4gcn_A Protein STI-1; structur 99.5 5.1E-14 1.7E-18 129.1 9.3 95 448-545 14-116 (127)
162 2e2e_A Formate-dependent nitri 99.5 9.9E-14 3.4E-18 132.6 11.6 82 462-543 27-112 (177)
163 2e2e_A Formate-dependent nitri 99.5 3E-13 1E-17 129.2 14.5 126 489-672 20-149 (177)
164 1wao_1 Serine/threonine protei 99.5 7.8E-15 2.7E-19 165.1 3.9 142 477-676 4-160 (477)
165 1zu2_A Mitochondrial import re 99.5 8.2E-14 2.8E-18 133.7 9.2 85 461-545 18-124 (158)
166 3upv_A Heat shock protein STI1 99.5 4.4E-13 1.5E-17 120.9 13.4 81 462-542 21-102 (126)
167 3rkv_A Putative peptidylprolyl 99.5 2.8E-13 9.5E-18 128.1 12.3 113 479-649 11-143 (162)
168 3q49_B STIP1 homology and U bo 99.4 8E-13 2.7E-17 119.9 14.0 121 473-651 3-129 (137)
169 1hxi_A PEX5, peroxisome target 99.4 4.3E-13 1.5E-17 122.0 12.1 80 593-672 40-119 (121)
170 3u3w_A Transcriptional activat 99.4 1.6E-12 5.6E-17 135.2 18.2 159 460-669 90-268 (293)
171 3rkv_A Putative peptidylprolyl 99.4 3.5E-13 1.2E-17 127.4 11.8 121 414-546 10-131 (162)
172 1a17_A Serine/threonine protei 99.4 1.7E-12 5.7E-17 120.9 15.7 134 381-544 11-149 (166)
173 2if4_A ATFKBP42; FKBP-like, al 99.4 3.2E-14 1.1E-18 152.7 4.4 139 476-672 176-333 (338)
174 2qfc_A PLCR protein; TPR, HTH, 99.4 3.5E-12 1.2E-16 132.7 19.3 161 383-543 75-268 (293)
175 3mv2_B Coatomer subunit epsilo 99.4 2.9E-12 9.8E-17 136.1 18.5 243 394-672 24-287 (310)
176 1b89_A Protein (clathrin heavy 99.4 6.8E-14 2.3E-18 154.8 6.1 237 385-665 34-309 (449)
177 3gw4_A Uncharacterized protein 99.4 9.1E-13 3.1E-17 127.2 13.3 157 462-672 9-181 (203)
178 1na0_A Designed protein CTPR3; 99.4 4.5E-12 1.5E-16 111.2 16.6 121 474-652 3-125 (125)
179 2fbn_A 70 kDa peptidylprolyl i 99.4 2.8E-13 9.7E-18 132.4 9.7 164 477-682 2-167 (198)
180 1zu2_A Mitochondrial import re 99.4 3.3E-13 1.1E-17 129.6 9.1 92 590-682 22-134 (158)
181 1hxi_A PEX5, peroxisome target 99.4 5.4E-13 1.9E-17 121.3 10.0 95 449-546 24-119 (121)
182 2dba_A Smooth muscle cell asso 99.4 3.9E-12 1.3E-16 116.0 15.0 121 471-649 20-144 (148)
183 1wao_1 Serine/threonine protei 99.4 1.9E-13 6.6E-18 153.7 6.4 138 447-611 11-162 (477)
184 2if4_A ATFKBP42; FKBP-like, al 99.4 6.3E-13 2.2E-17 142.6 8.0 155 381-546 177-333 (338)
185 1b89_A Protein (clathrin heavy 99.3 1.4E-12 4.7E-17 144.4 9.9 238 390-682 10-252 (449)
186 2kck_A TPR repeat; tetratricop 99.3 6.3E-12 2.2E-16 108.5 12.0 71 474-544 1-72 (112)
187 1elw_A TPR1-domain of HOP; HOP 99.3 2E-11 7E-16 106.1 15.3 65 480-544 5-70 (118)
188 3q49_B STIP1 homology and U bo 99.3 1.2E-11 4.1E-16 112.1 14.1 87 459-545 23-110 (137)
189 2lni_A Stress-induced-phosphop 99.3 1.3E-11 4.4E-16 110.2 13.6 84 462-545 33-117 (133)
190 1ihg_A Cyclophilin 40; ppiase 99.3 7.5E-12 2.6E-16 136.2 14.4 124 479-660 223-363 (370)
191 3u3w_A Transcriptional activat 99.3 1.5E-11 5.3E-16 127.8 15.8 157 387-543 79-268 (293)
192 2xev_A YBGF; tetratricopeptide 99.3 2.5E-11 8.6E-16 108.7 15.1 119 480-653 3-125 (129)
193 3k9i_A BH0479 protein; putativ 99.3 3E-12 1E-16 114.7 8.8 100 589-688 9-113 (117)
194 2vyi_A SGTA protein; chaperone 99.3 1.8E-11 6.1E-16 108.3 13.4 67 462-528 63-130 (131)
195 3ro3_A PINS homolog, G-protein 99.3 6.8E-12 2.3E-16 114.7 10.7 140 479-670 9-161 (164)
196 2xev_A YBGF; tetratricopeptide 99.3 3.1E-11 1.1E-15 108.2 14.3 108 514-676 4-115 (129)
197 1elw_A TPR1-domain of HOP; HOP 99.3 2.3E-11 7.9E-16 105.7 13.0 92 589-680 23-115 (118)
198 1na0_A Designed protein CTPR3; 99.3 6.7E-11 2.3E-15 103.6 15.9 113 512-682 9-122 (125)
199 2kck_A TPR repeat; tetratricop 99.3 1.9E-11 6.5E-16 105.5 12.1 105 509-671 2-110 (112)
200 2dba_A Smooth muscle cell asso 99.3 1.8E-11 6.3E-16 111.5 12.4 118 508-680 23-142 (148)
201 3k9i_A BH0479 protein; putativ 99.3 4.3E-12 1.5E-16 113.6 7.9 88 459-546 4-95 (117)
202 1ihg_A Cyclophilin 40; ppiase 99.3 1.3E-11 4.5E-16 134.3 13.3 138 382-571 222-360 (370)
203 3gw4_A Uncharacterized protein 99.3 2.9E-11 1E-15 116.5 13.8 151 395-545 4-180 (203)
204 1elr_A TPR2A-domain of HOP; HO 99.3 2.8E-11 9.5E-16 107.2 11.9 125 476-652 1-126 (131)
205 4b4t_Q 26S proteasome regulato 99.2 5E-11 1.7E-15 129.2 15.1 218 419-667 8-245 (434)
206 4ajy_C Transcription elongatio 99.2 3E-11 1E-15 106.6 9.1 81 184-267 4-97 (97)
207 3ro3_A PINS homolog, G-protein 99.2 1.5E-10 5.1E-15 105.7 13.7 140 381-544 7-161 (164)
208 2kat_A Uncharacterized protein 99.2 7.8E-11 2.7E-15 104.6 11.3 84 462-545 2-86 (115)
209 1elr_A TPR2A-domain of HOP; HO 99.2 1.1E-10 3.9E-15 103.2 11.8 106 575-680 8-121 (131)
210 2kat_A Uncharacterized protein 99.1 1.3E-10 4.4E-15 103.1 10.1 84 589-672 4-87 (115)
211 3ly7_A Transcriptional activat 99.1 1.2E-09 4.1E-14 118.2 19.1 156 516-686 200-358 (372)
212 4b4t_Q 26S proteasome regulato 99.1 6.1E-10 2.1E-14 120.6 13.0 172 480-669 5-206 (434)
213 3ma5_A Tetratricopeptide repea 99.1 2.5E-10 8.5E-15 99.7 8.0 73 599-671 2-74 (100)
214 2l6j_A TPR repeat-containing p 99.1 9.1E-11 3.1E-15 102.0 5.1 79 604-682 4-89 (111)
215 2l6j_A TPR repeat-containing p 99.1 7.2E-10 2.5E-14 96.2 10.5 94 570-663 3-103 (111)
216 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 5.5E-10 1.9E-14 105.3 10.4 92 184-283 4-122 (141)
217 1na3_A Designed protein CTPR2; 99.0 8.9E-10 3E-14 92.2 9.8 82 601-682 6-88 (91)
218 3ma5_A Tetratricopeptide repea 99.0 5.7E-10 1.9E-14 97.4 7.9 72 474-545 2-74 (100)
219 3mv2_B Coatomer subunit epsilo 99.0 5.7E-09 2E-13 110.7 14.5 56 600-661 251-306 (310)
220 2p1m_A SKP1-like protein 1A; F 98.9 2.6E-10 8.8E-15 109.9 2.8 105 184-295 6-140 (160)
221 3ly7_A Transcriptional activat 98.9 2.1E-08 7.2E-13 108.4 16.7 144 383-546 196-344 (372)
222 2kc7_A BFR218_protein; tetratr 98.9 1.4E-09 4.6E-14 93.4 5.5 87 449-546 7-95 (99)
223 1na3_A Designed protein CTPR2; 98.9 1.7E-08 5.7E-13 84.3 12.1 48 605-652 44-91 (91)
224 3u64_A Protein TP_0956; tetrat 98.9 4.2E-08 1.5E-12 102.4 17.5 83 589-671 182-273 (301)
225 2kc7_A BFR218_protein; tetratr 98.8 1.2E-08 4.1E-13 87.4 8.5 69 607-675 3-73 (99)
226 4e6h_A MRNA 3'-END-processing 98.8 4E-07 1.4E-11 106.7 23.4 225 435-682 329-587 (679)
227 4e6h_A MRNA 3'-END-processing 98.7 5.6E-07 1.9E-11 105.4 22.9 228 464-707 328-574 (679)
228 1klx_A Cysteine rich protein B 98.7 2.3E-07 7.8E-12 86.1 14.1 113 397-544 9-129 (138)
229 3n71_A Histone lysine methyltr 98.6 2.1E-07 7.1E-12 105.0 14.4 128 392-542 318-465 (490)
230 3bee_A Putative YFRE protein; 98.6 1.7E-07 5.7E-12 81.7 9.9 71 600-670 2-75 (93)
231 2eqx_A Kelch repeat and BTB do 98.6 3.3E-08 1.1E-12 88.3 4.5 84 280-372 6-97 (105)
232 1klx_A Cysteine rich protein B 98.6 5.8E-07 2E-11 83.3 13.2 117 526-674 9-133 (138)
233 3n71_A Histone lysine methyltr 98.5 4.1E-07 1.4E-11 102.6 11.8 126 485-665 315-462 (490)
234 1pc2_A Mitochondria fission pr 98.4 5.6E-07 1.9E-11 85.5 9.4 89 591-679 19-113 (152)
235 2v5f_A Prolyl 4-hydroxylase su 98.4 1E-06 3.4E-11 77.7 10.2 78 603-680 4-89 (104)
236 1hv2_A Elongin C, ELC1; protei 98.4 7.2E-07 2.5E-11 78.8 8.9 80 183-267 5-99 (99)
237 3u64_A Protein TP_0956; tetrat 98.4 7.3E-06 2.5E-10 85.6 17.6 84 462-545 180-273 (301)
238 2uy1_A Cleavage stimulation fa 98.4 0.00019 6.6E-09 80.7 30.9 344 340-703 11-412 (493)
239 2fnj_C Transcription elongatio 98.3 7.5E-07 2.6E-11 78.2 6.6 80 184-267 3-96 (96)
240 3bee_A Putative YFRE protein; 98.3 2.2E-06 7.7E-11 74.5 9.6 71 475-545 2-76 (93)
241 1pc2_A Mitochondria fission pr 98.3 4.7E-06 1.6E-10 79.1 12.3 98 462-565 15-118 (152)
242 3v7d_A Suppressor of kinetocho 98.3 4.1E-06 1.4E-10 81.2 12.0 97 183-283 8-134 (169)
243 3drz_A BTB/POZ domain-containi 98.2 9.2E-06 3.2E-10 72.6 10.4 94 183-280 7-106 (107)
244 2uy1_A Cleavage stimulation fa 98.1 0.00011 3.7E-09 82.7 21.3 78 397-474 28-118 (493)
245 3qww_A SET and MYND domain-con 98.1 5.6E-06 1.9E-10 91.9 8.6 64 604-667 340-411 (433)
246 2v5f_A Prolyl 4-hydroxylase su 98.0 4.1E-05 1.4E-09 67.2 10.9 75 384-458 6-89 (104)
247 3qww_A SET and MYND domain-con 98.0 1.3E-05 4.4E-10 89.0 9.3 89 458-546 311-421 (433)
248 3qwp_A SET and MYND domain-con 97.9 6.7E-05 2.3E-09 83.1 12.1 92 394-508 298-400 (429)
249 1vcb_B Protein (elongin C); tu 97.8 3.5E-05 1.2E-09 69.5 7.5 81 183-267 18-112 (112)
250 3qwp_A SET and MYND domain-con 97.7 9.7E-05 3.3E-09 81.8 10.8 68 479-546 329-410 (429)
251 1nzn_A CGI-135 protein, fissio 97.7 0.00012 4E-09 67.2 8.7 89 592-680 23-117 (126)
252 1nzn_A CGI-135 protein, fissio 97.4 0.0014 4.8E-08 60.0 12.3 97 462-564 18-120 (126)
253 3drx_A BTB/POZ domain-containi 97.2 0.00087 3E-08 66.2 8.6 94 184-281 14-113 (202)
254 1y8m_A FIS1; mitochondria, unk 96.6 0.022 7.6E-07 53.1 12.3 80 601-680 36-120 (144)
255 4g26_A Pentatricopeptide repea 96.6 0.22 7.5E-06 55.9 23.0 163 486-674 33-213 (501)
256 4g26_A Pentatricopeptide repea 96.5 0.14 4.8E-06 57.5 20.5 155 391-546 34-211 (501)
257 1qsa_A Protein (soluble lytic 96.2 1.9 6.4E-05 49.7 28.3 283 384-674 7-354 (618)
258 3o48_A Mitochondria fission 1 96.2 0.022 7.5E-07 52.5 9.6 79 601-679 37-120 (134)
259 1y8m_A FIS1; mitochondria, unk 95.9 0.16 5.6E-06 47.2 14.2 84 475-564 35-123 (144)
260 3o48_A Mitochondria fission 1 95.8 0.073 2.5E-06 49.0 11.2 83 478-566 39-126 (134)
261 1s1g_A Potassium voltage-gated 95.7 0.013 4.3E-07 53.6 5.7 86 183-275 14-105 (124)
262 3kvt_A Potassium channel prote 95.4 0.014 4.7E-07 52.7 4.8 84 184-271 7-93 (115)
263 1nn7_A Potassium channel KV4.2 95.2 0.0089 3E-07 53.0 2.7 85 184-275 2-92 (105)
264 2ff4_A Probable regulatory pro 95.1 0.87 3E-05 49.2 19.0 75 608-682 175-256 (388)
265 3ffl_A Anaphase-promoting comp 95.1 0.11 3.7E-06 49.7 10.0 113 385-505 22-148 (167)
266 2nz0_B Potassium voltage-gated 94.9 0.018 6.2E-07 53.7 4.1 85 183-274 36-126 (140)
267 1t1d_A Protein (potassium chan 94.6 0.023 8E-07 49.8 3.7 84 184-271 3-90 (100)
268 3ffl_A Anaphase-promoting comp 94.4 0.11 3.9E-06 49.5 8.4 77 462-538 37-148 (167)
269 1zbp_A Hypothetical protein VP 94.4 0.54 1.8E-05 48.3 13.9 129 487-638 5-134 (273)
270 2ff4_A Probable regulatory pro 94.1 0.58 2E-05 50.6 14.4 59 482-540 174-233 (388)
271 4h7y_A Dual specificity protei 93.9 0.59 2E-05 44.0 11.9 115 509-641 9-131 (161)
272 3mkq_A Coatomer beta'-subunit; 93.7 2.6 9.1E-05 48.5 20.1 47 488-538 661-707 (814)
273 4h7y_A Dual specificity protei 93.7 0.75 2.6E-05 43.3 12.2 102 410-511 8-126 (161)
274 4gns_B Protein CSD3, chitin bi 93.1 0.3 1E-05 57.5 10.6 60 603-662 336-395 (754)
275 1qsa_A Protein (soluble lytic 92.3 2.9 9.8E-05 48.1 17.2 237 422-691 221-486 (618)
276 3kae_A CDC27, possible protein 91.3 2.9 0.0001 40.1 12.9 115 474-638 28-148 (242)
277 1ya0_A SMG-7 transcript varian 91.1 0.79 2.7E-05 51.4 10.5 70 609-678 157-227 (497)
278 3txn_A 26S proteasome regulato 90.8 11 0.00036 40.9 18.8 90 483-572 103-201 (394)
279 4gns_B Protein CSD3, chitin bi 90.4 0.95 3.3E-05 53.2 10.7 47 459-505 351-397 (754)
280 3mkq_A Coatomer beta'-subunit; 86.2 8.8 0.0003 44.1 15.3 110 393-534 662-771 (814)
281 4fhn_B Nucleoporin NUP120; pro 84.9 13 0.00044 45.8 16.6 135 392-536 821-962 (1139)
282 1zbp_A Hypothetical protein VP 84.4 2.2 7.6E-05 43.8 7.9 60 613-672 6-65 (273)
283 4b4t_S RPN3, 26S proteasome re 77.5 1.9 6.5E-05 48.3 4.9 37 604-640 270-306 (523)
284 1ya0_A SMG-7 transcript varian 76.9 6.3 0.00022 44.0 9.0 70 420-489 157-230 (497)
285 4fhn_B Nucleoporin NUP120; pro 75.8 17 0.00058 44.7 13.3 136 484-662 817-962 (1139)
286 3txn_A 26S proteasome regulato 75.0 25 0.00087 37.9 12.9 58 609-666 104-167 (394)
287 3kae_A CDC27, possible protein 74.2 64 0.0022 31.0 16.9 53 388-443 38-90 (242)
288 4b4t_R RPN7, 26S proteasome re 72.6 17 0.00059 39.4 11.0 80 463-542 115-198 (429)
289 3spa_A Mtrpol, DNA-directed RN 69.4 33 0.0011 41.7 13.0 68 480-547 166-238 (1134)
290 2eqx_A Kelch repeat and BTB do 68.6 4.4 0.00015 35.2 4.1 33 250-282 8-40 (105)
291 2r9r_B Paddle chimera voltage 66.2 5.8 0.0002 44.5 5.6 81 184-271 54-141 (514)
292 3mkq_B Coatomer subunit alpha; 64.7 44 0.0015 31.9 10.6 49 487-539 13-61 (177)
293 4b4t_R RPN7, 26S proteasome re 60.3 13 0.00044 40.4 6.9 60 385-444 133-197 (429)
294 2w2u_A Hypothetical P60 katani 57.7 15 0.00051 30.7 5.2 34 379-412 15-48 (83)
295 2w2u_A Hypothetical P60 katani 54.4 26 0.00089 29.2 6.2 32 398-442 15-46 (83)
296 2crb_A Nuclear receptor bindin 53.3 15 0.00052 31.3 4.5 29 604-632 15-43 (97)
297 2v6y_A AAA family ATPase, P60 53.0 30 0.001 28.7 6.4 24 387-410 15-38 (83)
298 2crb_A Nuclear receptor bindin 52.8 14 0.00048 31.5 4.2 29 479-507 15-43 (97)
299 4b4t_S RPN3, 26S proteasome re 52.5 41 0.0014 37.7 9.2 143 393-550 146-308 (523)
300 2v6y_A AAA family ATPase, P60 49.1 25 0.00087 29.2 5.3 33 399-444 8-40 (83)
301 3htm_A Speckle-type POZ protei 48.3 12 0.00041 34.6 3.6 34 250-283 132-165 (172)
302 3mkq_B Coatomer subunit alpha; 46.2 1.2E+02 0.0041 28.9 10.2 44 394-440 16-59 (177)
303 3spa_A Mtrpol, DNA-directed RN 46.2 1.5E+02 0.005 36.2 13.0 70 480-549 128-204 (1134)
304 1wfd_A Hypothetical protein 15 43.4 43 0.0015 28.4 6.0 10 429-438 29-38 (93)
305 3re2_A Predicted protein; meni 42.1 37 0.0013 36.2 6.2 43 464-506 276-323 (472)
306 4b4t_P 26S proteasome regulato 41.8 1.5E+02 0.005 32.2 11.6 133 349-507 99-246 (445)
307 3u84_A Menin; MLL, JUND, ledgf 41.5 37 0.0013 36.8 6.2 43 464-506 298-345 (550)
308 2v6x_A Vacuolar protein sortin 41.1 31 0.0011 28.6 4.6 34 379-412 9-42 (85)
309 2cpt_A SKD1 protein, vacuolar 40.1 32 0.0011 30.5 4.9 33 380-412 15-47 (117)
310 1wfd_A Hypothetical protein 15 38.8 34 0.0012 29.0 4.6 33 380-412 12-44 (93)
311 3hqi_A Speckle-type POZ protei 37.3 20 0.0007 36.7 3.6 34 250-283 272-305 (312)
312 3ltm_A Alpha-REP4; protein eng 37.1 2.5E+02 0.0086 25.9 11.6 73 588-666 112-184 (211)
313 2vkp_A BTB/POZ domain-containi 36.3 28 0.00097 29.4 3.8 32 284-315 78-109 (109)
314 3re2_A Predicted protein; meni 35.8 63 0.0021 34.4 6.8 59 384-442 256-323 (472)
315 3ax2_A Mitochondrial import re 35.4 43 0.0015 27.3 4.4 31 483-513 21-51 (73)
316 4ady_A RPN2, 26S proteasome re 33.2 7.1E+02 0.024 29.9 17.5 33 77-112 63-95 (963)
317 3esl_A Checkpoint serine/threo 31.7 1.4E+02 0.0049 29.0 8.2 99 599-701 75-185 (202)
318 4gq4_A Menin; tumor suppressor 31.0 76 0.0026 34.4 6.6 44 400-443 281-331 (489)
319 3u84_A Menin; MLL, JUND, ledgf 30.4 2.1E+02 0.0073 31.0 9.8 58 383-441 277-344 (550)
320 1o9d_A 14-3-3-like protein C; 29.0 4.6E+02 0.016 26.4 16.9 68 621-702 152-234 (260)
321 4a1g_A Mitotic checkpoint seri 28.6 2.3E+02 0.0079 26.2 8.8 55 620-674 81-137 (152)
322 2ijq_A Hypothetical protein; s 28.0 1.5E+02 0.0053 27.7 7.5 60 608-667 36-104 (161)
323 4aez_C MAD3, mitotic spindle c 27.2 4.6E+02 0.016 25.8 12.0 79 590-668 97-180 (223)
324 4a1g_A Mitotic checkpoint seri 27.0 2.2E+02 0.0074 26.4 8.3 97 346-445 28-131 (152)
325 1o9d_A 14-3-3-like protein C; 25.2 5.3E+02 0.018 25.9 14.9 70 496-570 152-239 (260)
326 2npm_A 14-3-3 domain containin 24.4 5.5E+02 0.019 25.8 12.1 118 386-506 31-225 (260)
327 4a5x_A MITD1, MIT domain-conta 24.3 80 0.0027 26.3 4.4 26 387-412 20-45 (86)
328 4gq2_M Nucleoporin NUP120; bet 23.9 1.8E+02 0.0062 34.8 9.1 130 385-526 812-950 (950)
329 2z8h_A Transcription regulator 23.4 41 0.0014 30.0 2.6 34 284-317 102-135 (138)
330 1om2_A Protein (mitochondrial 23.1 70 0.0024 27.4 3.8 32 483-514 24-55 (95)
331 3t5x_A PCI domain-containing p 23.0 85 0.0029 30.4 5.0 31 385-415 16-46 (203)
332 4gq4_A Menin; tumor suppressor 22.7 1.3E+02 0.0045 32.6 6.5 42 464-505 283-329 (489)
333 3t5x_A PCI domain-containing p 22.2 1.2E+02 0.0039 29.4 5.7 37 416-452 15-51 (203)
334 4a5x_A MITD1, MIT domain-conta 21.5 1E+02 0.0035 25.7 4.5 27 607-633 19-45 (86)
335 3ubw_A 14-3-3E, 14-3-3 protein 21.2 6.4E+02 0.022 25.4 21.3 69 620-702 172-255 (261)
336 3hve_A Gigaxonin; ubiquitin, c 20.5 50 0.0017 32.7 2.8 33 250-282 131-163 (256)
337 3i3n_A Kelch-like protein 11; 20.3 62 0.0021 32.5 3.5 33 250-282 139-171 (279)
338 2v6x_A Vacuolar protein sortin 20.3 1.1E+02 0.0038 25.1 4.5 26 608-633 17-42 (85)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.7e-33 Score=297.43 Aligned_cols=319 Identities=14% Similarity=0.090 Sum_probs=220.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+....+++.+++..+. ...+++.+|.++...|++++|+..|++|++++| ..++.++|.++...|++++|+..|.
T Consensus 49 ~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555554443332 245677788888888888888888888877754 3356777778888888888888888
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
++++.+|+...++..+|. .++.++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ +..
T Consensus 126 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 888888877777766654 255578888888888888888888888888888888888888888888888885 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh-hHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG-RVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD 585 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~-~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~ 585 (714)
+.++|.++...|++++|+..|+++++++|++...+. .+.+....+......+.+++ .++|..+...+...+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 777777888888888888888888888887643221 11122222222222221111 223334444444444
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|+++..+|++++|+..|+++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444 5677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCCHH-HHHHHHHHhhc
Q 005106 665 IQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~ 683 (714)
++++|++. +|++.|.++..
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHHHHH
Confidence 77777777 77777776653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.8e-31 Score=285.03 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=278.0
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+.....++.+.+..++. ..++..+|.++...|++++|+..++++++.+|. .++..+|.++...|++++|+..|+
T Consensus 15 ~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555666655544433 456778999999999999999999999999654 468899999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
+++++.|+...+|.++|. .++.++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|+ +..
T Consensus 92 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999988888864 366699999999999999999999999999999999999999999999999996 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH---------------HHHHHhhhh
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI---------------ADCWLQLYD 579 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------------A~~~~~l~~ 579 (714)
+.++|.++...|++++|+..|+++++++|++..+ ...++.+....+++++ +.+|..+..
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 9999999999999999999999999999998542 2333333333333333 344455555
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
.....+++. |+..++++++++|.++.+|+++|.++.++|++++|+..|+++++++|++++++.++|.++..+|++++|+
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 555556666 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 659 RKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
..|++++++.|++. +++..|.++....- -..-+..+++|++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGK----LQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTC----CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Confidence 99999999999877 99999998876542 34456777777764
No 3
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.97 E-value=1.9e-31 Score=276.80 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=164.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||++++. |+...+|+|+ ++++++|+.+++|+|||++. ++.
T Consensus 25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~ 101 (256)
T 3hve_A 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 101 (256)
T ss_dssp CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-
T ss_pred HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccH
Confidence 568899999999999999999999999999999999999988 6778899999 59999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+.. .|+.+.+
T Consensus 102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 180 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL 180 (256)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence 9999999999999999999999999999995 799999999999999999999999999888754 7788999
Q ss_pred HHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHHHH
Q 005106 325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLL 384 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~~ 384 (714)
.++++++++. |..|..++.++++|+.++...|.+++..||++ +|++ +.++.+.+
T Consensus 181 ~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~-VRf~~l~~~~l~~~v 237 (256)
T 3hve_A 181 KEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSA-LWVSGLDSSYLREQM 237 (256)
T ss_dssp HHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHH-HHHHTTCC-CHHHHH
T ss_pred HHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHH
Confidence 9999999984 77888999999999999998899999999998 6644 55555444
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5.8e-28 Score=252.91 Aligned_cols=303 Identities=12% Similarity=0.001 Sum_probs=254.0
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....++.++...+.. ..+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 5567777887766655433 5688999999999999999999999999985 4567889999999999999999999
Q ss_pred HHHHhcCC---CcHHHHHHHH----------------hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 005106 439 NSVISSVT---PLGWMYQERS----------------LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (714)
Q Consensus 439 ~~aI~~~p---~~~~ay~~rg----------------~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl 499 (714)
.++++..| +...++...+ ..+++++|+..|+++++.+|+++.++.++|.++..+|++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999 7776666552 1356699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++... ......+......+..+.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~--- 245 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC------FAHYKQVKKLNKLIESAEELI--- 245 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH------HHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999996 8888999999999999999999999999999998542 222222222222222232221
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
..+++. |+..++++++.+|.++. ++.++|.++..+|++++|+..++++++++|+++.++.++|.+++.+|+
T Consensus 246 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 246 ----RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp ----HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 123333 58899999999999984 477899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
+++|+..|++|++++|++. ++...+-
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999987 5554443
No 5
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=9.9e-29 Score=256.65 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=250.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
.+..+|..+...|++++|+..|+++++.+| ..++..++.++...|++++|+..+.++++.+|+.+.+|..+|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999854 44567789999999999999999999999999999999988753
Q ss_pred C-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 459 C-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 459 ~-~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+ ..++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ ...+..+|.++..+|++++|+..|+
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 6799999999999999999999999999999999999999999999999996 7888889999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC---------CCChhHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---------APKGVLY 607 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~---------P~~~~~~ 607 (714)
++++++|++. .+....+.+....+++++| +..+++++++. |..+.++
T Consensus 184 ~al~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 184 QALSIAPEDP------FVMHEVGVVAFQNGEWKTA------------------EKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHTTCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHhCCCCh------HHHHHHHHHHHHcccHHHH------------------HHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999983 3455555555666666666 78899999997 8888999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
+++|.++..+|++++|+..++++++++|+++.++.++|++++.+|++++|+..|+++++++|++. ++...|.++.-.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887 999999888533
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=5.5e-28 Score=263.91 Aligned_cols=304 Identities=12% Similarity=-0.001 Sum_probs=255.1
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+....+++.+++..+. ...+++.+|.++...|++++|+..|+++++.+| ..++..+|.++..+|++++|+..|
T Consensus 41 ~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 117 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777788776665443 367889999999999999999999999999854 557888999999999999999999
Q ss_pred HHHHhcCCCcH---HHHHHH------------H----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 005106 439 NSVISSVTPLG---WMYQER------------S----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (714)
Q Consensus 439 ~~aI~~~p~~~---~ay~~r------------g----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl 499 (714)
+++++..|+.. .++... | ..+++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999877 554332 1 1245599999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++.+|+ +..+..+|.++...|++++|+..|+++++++|++.... .....+.........+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~----- 266 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF------AHYKQVKKLNKLIESAEE----- 266 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHHHHHHHHHH-----
Confidence 999999999996 88899999999999999999999999999999985432 111111111111222222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
....+++. |+..++++++++|.++. +++++|.++.++|++++|+..++++++++|++++++.++|+++..+|+
T Consensus 267 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 267 --LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp --HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred --HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 12223333 58899999999999954 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
+++|+..|+++++++|+.. ++.+.|.+
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999987 88888733
No 7
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.97 E-value=2.8e-31 Score=279.12 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=173.4
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCC----CCCHHHHHHHHHhhccCCC
Q 005106 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSL 247 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~----~i~~~~~~~lL~f~Ytg~l 247 (714)
+..++.+|||+|+|| |++|+|||.|||++|+||++||+++|+|+.+.+|+|++. ++++++|+.+++|+|||++
T Consensus 26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~ 105 (279)
T 3i3n_A 26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI 105 (279)
T ss_dssp HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE
T ss_pred HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc
Confidence 456888999999998 999999999999999999999999999999999999821 5999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CC
Q 005106 248 NGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CL 319 (714)
Q Consensus 248 ~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L 319 (714)
. ++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+.. .|
T Consensus 106 ~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 106 R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 9 9999999999999999999999999999999995 799999999999999999999999999888754 67
Q ss_pred ChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHH
Q 005106 320 NDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQR 382 (714)
Q Consensus 320 ~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~ 382 (714)
+.+.+.++++++++. |..|..++.++++|+.++...|..++.+||+. +|++ +.++.+
T Consensus 184 ~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~-VRf~l~~~~~L~~ 243 (279)
T 3i3n_A 184 PFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL-LRLSQMKPTYLTR 243 (279)
T ss_dssp CHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT-SCGGGSCHHHHHH
T ss_pred CHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence 889999999999985 88899999999999999987788899999988 6654 544443
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.8e-27 Score=249.13 Aligned_cols=294 Identities=18% Similarity=0.094 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc--
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-- 458 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-- 458 (714)
..++..+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..++++++.+|+.+.+|..+|..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45778999999999999999999999999854 55788899999999999999999999999999998888888753
Q ss_pred --CChhHHHHHHHHHHhcCC---CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 005106 459 --CEGDKRWEDLDKATALDP---TLSYPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (714)
Q Consensus 459 --~~~~eAl~d~~kAi~LdP---~~~~ay~~r------------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (714)
+++++|+..|+++++++| ++..++..+ |.++...|++++|+..|+++++.+|+ +..+..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 677999999999999999 999999888 79999999999999999999999996 888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
++..+|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A------------------~~~~~~a~~~~ 218 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKLD 218 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhhC
Confidence 99999999999999999999999984 3444555555555666666 78899999999
Q ss_pred CCChhHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 601 APKGVLYF------------RQSLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 601 P~~~~~~~------------~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
|.++.++. .+|.++.+.|++++|+..++++++..|+++ .++.++|.++..+|++++|+..|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999765 458899999999999999999999999988 45778999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++++|+.. +++..|.++.... --...+..++.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHhCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc
Confidence 99999766 9999999987654 234556667777664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.8e-27 Score=257.24 Aligned_cols=295 Identities=18% Similarity=0.095 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++.+|..+...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|.++++.+|+...++..+|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 46778899999999999999999999999985 45678889999999999999999999999999999999988875
Q ss_pred --cCChhHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLS---YPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~---~ay~~r------------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
.++.++|+..|+++++++|++. .++..+ |.++...|++++|+..|+++++++|+ +..+..+|
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3677999999999999999998 776655 77799999999999999999999996 88889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l 599 (714)
.+|..+|++++|+..|+++++++|++. .+...++.+....+++++| +..+++++++
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~ 240 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKL 240 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHh
Confidence 999999999999999999999999984 3444445455555556655 8899999999
Q ss_pred CCCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 600 DAPKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 600 ~P~~~~~~~~~------------g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|.++..+... |.++...|++++|+..|+++++++|+++ .++.++|.++..+|++++|+..+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998776 9999999999999999999999999985 4899999999999999999999999
Q ss_pred HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+++++|++. +|+.+|.++.... --..-+..++.|++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHh
Confidence 999999765 9999999987653 234455666666654
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=8e-29 Score=271.99 Aligned_cols=250 Identities=10% Similarity=-0.050 Sum_probs=191.1
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCC-hhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE-GDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~-~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
..++.++|.++..+|++++|++.|+++|+++|++..+|.+||. .++ +++|+..|++||+++|+++.+|++||.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666654 243 67777778888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh-hhh
Q 005106 490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-IDN 567 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~-~~~ 567 (714)
..+|++++|+..|++||+++|+ +.+|++||+++..+|++++|+.+|+++++++|++.. +...++.+... .+.
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~------a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS------VWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCS
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCc
Confidence 8888888888888888888885 777888888888888888888888888888888732 33333333322 222
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg--~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
.++|. -..++..+++||+++|+++.+|+++|.++..+| ++++|+..++++ +++|++..++..+|
T Consensus 251 ~~eA~-------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La 316 (382)
T 2h6f_A 251 NDRAV-------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLV 316 (382)
T ss_dssp CSHHH-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHH
T ss_pred chHHH-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHH
Confidence 23331 001257899999999999999999999999998 689999999998 99999999999999
Q ss_pred HHHHhcC---------CHHHHHHHHHHH-HhcCCCHH-HHHHHHHHhhcc
Q 005106 646 WILYDTS---------HCEEGLRKAEES-IQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 646 ~~ly~~G---------~~eeAl~~ye~A-i~i~~~~~-a~~~~~~~~~~~ 684 (714)
+++..+| .+++|+..|+++ ++++|... .|..++-+|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999985 369999999999 99999998 788888777654
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.1e-26 Score=263.30 Aligned_cols=293 Identities=10% Similarity=-0.001 Sum_probs=257.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
....+++.+.+.+ .+..++..+|..+...|++++|+..|+++++.+ ...++..++.++...|++++|+..++++
T Consensus 290 ~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 290 RAEDYLSSINGLE----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHTSTTGG----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555544442 346778899999999999999999999999885 4557788999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
+...|+...+|..+|. .++.++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++..|+ ...+.
T Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999998888888764 367799999999999999999999999999999999999999999999999995 78888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.++.+|...|++++|+..|+++++++|++.. +....+.+....+++++| +..++++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~ 501 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTA------------------INHFQNA 501 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHH
Confidence 9999999999999999999999999999843 344444455555666666 7889999
Q ss_pred HHh------CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 597 LES------DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 597 L~l------~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+++ +|.+ +.+|+++|.++.++|++++|++.++++++++|+++.++..+|.++...|++++|+..|+++++++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999 6765 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhhcc
Q 005106 670 SFE-AFFLKAYALADS 684 (714)
Q Consensus 670 ~~~-a~~~~~~~~~~~ 684 (714)
++. ++++.|.+++.+
T Consensus 582 ~~~~~~~~l~~~~~~~ 597 (597)
T 2xpi_A 582 NEIMASDLLKRALEEN 597 (597)
T ss_dssp TCHHHHHHHHHTTC--
T ss_pred CChHHHHHHHHHHhcC
Confidence 988 999999888753
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.4e-27 Score=256.52 Aligned_cols=319 Identities=10% Similarity=0.022 Sum_probs=245.5
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------
Q 005106 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG------- 413 (714)
Q Consensus 347 ~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~------~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~------- 413 (714)
.+-.|.+|.+... +.+.+.+.++++.++... .....+++.++|.++..+|++++|+.+|++|+++.
T Consensus 53 ~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4556788877754 567777888776654321 22235788999999999999999999999999872
Q ss_pred ---chhhHhhHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHH-------hcCChhHHHHHHHHHHhcCCCChHH
Q 005106 414 ---HIYSIAGLARLGYIK--GHKLWAYEKLNSVISSVTPLGWMYQERS-------LYCEGDKRWEDLDKATALDPTLSYP 481 (714)
Q Consensus 414 ---~~~a~~~lg~~~~~~--G~~~~A~~~~~~aI~~~p~~~~ay~~rg-------~~~~~~eAl~d~~kAi~LdP~~~~a 481 (714)
.+..+.++|.++... +++++|+..|+++++++|+++.++..++ .+++.++|+..|++|++++|+++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 234456667666554 5799999999999999999888776654 4567789999999999999999999
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 005106 482 YMYRASSLMTK----QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (714)
Q Consensus 482 y~~rg~~l~~l----~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~ 556 (714)
+.++|..+..+ |++++|+..|++++.++|+ +..+.++|.+|...|++++|+..|++|++++|++...+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 287 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI---- 287 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH----
Confidence 99999887665 5788999999999999996 88889999999999999999999999999999996543322
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+.+.........+..+.............. |+..++++++++|.++.+++++|.++..+|++++|+..|++|++++|
T Consensus 288 --g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 288 --GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp --HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 222111111111111111111111112222 57899999999999999999999999999999999999999999999
Q ss_pred CChhH---HHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 636 SDHER---LVYEGW-ILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 636 ~~~ea---~~~~G~-~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.+. +.+.|. .++.+|++++|+..|++|++++|...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 87764 567775 45789999999999999999987653
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.3e-27 Score=253.43 Aligned_cols=271 Identities=12% Similarity=0.001 Sum_probs=228.6
Q ss_pred HHHhccchHHHHH-HHHHHHhccc------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCC
Q 005106 392 VRLLRKEYDEAEH-LFEAAVNAGH------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE 460 (714)
Q Consensus 392 ~~~~~g~y~eA~~-~f~~AL~~~~------~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~ 460 (714)
.+...|+|++|+. .|++|+++.+ ..++..+|.++...|++++|+..|+++++.+|+.+.+|..+|. .++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566789999999 9999998843 3457889999999999999999999999999999999988875 367
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH----------------HHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE----------------LRFCFFL 523 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~----------------~R~~~~~ 523 (714)
+++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+. ..+.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 799999999999999999999999999999999999999999999999996 44333 345555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
..|++++|+..|+++++++|+... ..+...++.+....+++++| +..++++++++|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKA------------------VDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCC
Confidence 999999999999999999999310 23444455555555666666 88999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------------ 671 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------------ 671 (714)
+.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+++.+|++++|+..|++++++.|+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhccC
Q 005106 672 EAFFLKAYALADSS 685 (714)
Q Consensus 672 ~a~~~~~~~~~~~~ 685 (714)
.+|...|.++...+
T Consensus 331 ~~~~~l~~~~~~~g 344 (368)
T 1fch_A 331 NIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 58999998887554
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=8.1e-27 Score=247.34 Aligned_cols=260 Identities=13% Similarity=-0.009 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..+++++|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..++++++++|+.+.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999999999985 45578889999999999999999999999999999999988875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYM----------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLEL 517 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~----------------~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~ 517 (714)
.++.++|+..|+++++++|++..++. .+|.++ ..|++++|+..|+++++++|+ +..+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 36779999999999999999998887 567776 999999999999999999997 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 005106 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL 597 (714)
+|.++...|++++|+..|+++++++|++. .+...++.+....+++++| +..+++++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al 278 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRAL 278 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 99999999999999999999999999983 3445555555566666666 88999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----------HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-----------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+++|.++.+++++|.++.++|++++|+..+++|++++|++ +.++.++|.++..+|++++|...++++++
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999998876
Q ss_pred c
Q 005106 667 M 667 (714)
Q Consensus 667 i 667 (714)
+
T Consensus 359 ~ 359 (368)
T 1fch_A 359 T 359 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2e-26 Score=257.01 Aligned_cols=304 Identities=11% Similarity=0.020 Sum_probs=241.8
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHH
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYI 427 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~ 427 (714)
-+..+..... +.+.....++++++..++. ..+++++|.++...|++++|+..|+++++++| ..++..+|.++..
T Consensus 30 ~~g~~~~~~g-~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 30 NRGNHFFTAK-NFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHTT-CCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3333433332 5667778888877655433 57788999999999999999999999998854 4567788999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHH------------------------------------------------------
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQ------------------------------------------------------ 453 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~------------------------------------------------------ 453 (714)
+|++++|+..|+ ++...|+....+.
T Consensus 106 ~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 999999999885 7766665332210
Q ss_pred --------------HHHh------------cCChhHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCCHHHHHH
Q 005106 454 --------------ERSL------------YCEGDKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 454 --------------~rg~------------~~~~~eAl~d~~kAi~LdP~~~~-------ay~~rg~~l~~l~r~~eAl~ 500 (714)
..+. .+.+++|+..|+++++.+|+++. +|..+|.++...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 0000 01348899999999999999865 68889999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 501 EINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 501 ~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
.|+++++++|++..+..+|.++...|++++|+..|+++++++|++.. +....+.+....+++++|
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A--------- 329 (537)
T 3fp2_A 265 LLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQDYKNA--------- 329 (537)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH---------
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHhcCCHHHH---------
Confidence 99999999999888888999999999999999999999999999843 445555555566666666
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|+..
T Consensus 330 ---------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 330 ---------KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp ---------HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH-------HHHHHHHHhh
Q 005106 661 AEESIQMKRSFE-------AFFLKAYALA 682 (714)
Q Consensus 661 ye~Ai~i~~~~~-------a~~~~~~~~~ 682 (714)
|++++++.|+.. .++.+|.++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 999999987653 2455555554
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=255.71 Aligned_cols=335 Identities=13% Similarity=-0.003 Sum_probs=233.9
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++...+ +..+++++|.++...|++++|+..|+++++.+| ..++..+|.++..+|++++|+..|
T Consensus 21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566667777665544 256777888888888888888888888888754 346777888888888888888888
Q ss_pred HHHHhcCCC-----------------------------------------------------------------------
Q 005106 439 NSVISSVTP----------------------------------------------------------------------- 447 (714)
Q Consensus 439 ~~aI~~~p~----------------------------------------------------------------------- 447 (714)
++++...|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 888777652
Q ss_pred --------cHHHHHHHHh-------cCChhHHHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHhcCCHHHH
Q 005106 448 --------LGWMYQERSL-------YCEGDKRWEDLDKATA-----L--D-------PTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 448 --------~~~ay~~rg~-------~~~~~eAl~d~~kAi~-----L--d-------P~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.+.++..+|. .+++++|+..|+++++ + + |.++.+|..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 2455555543 3445888888888888 6 3 55567788888888888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH-------
Q 005106 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI------- 570 (714)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~------- 570 (714)
+..|+++++.+|++..+..+|.++...|++++|+..|+++++++|++...+ ..+.+....+........+++
T Consensus 257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 888888888888755566677888888888888888888888888774422 112122221111111111111
Q ss_pred -HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHH
Q 005106 571 -ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLV 642 (714)
Q Consensus 571 -A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~ 642 (714)
..+|..+.......+++. |+..++++++.+|.++.+++++|.++..+|++++|+..++++++++|++.+ ++.
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 234444455555555655 677888888888888888888888888888888888888888888888865 888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 643 YEGWILYD---TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 643 ~~G~~ly~---~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++|.+++. +|++++|+..|++++.+.|+.. +++..|.++...+ --...+..++.|++
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE----DIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHH
Confidence 88888888 8888888888888888888766 7777777776543 22334444555543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=6.8e-27 Score=249.22 Aligned_cols=260 Identities=12% Similarity=-0.041 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...++.+|..+...|++++|+..|+++++.+ ...++..+|.++..+|++++|+..|+++++++|+.+.+|.++|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3446677777777788888888888877764 34456677777777777777777777777777776666666654
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYR----------ASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFL 523 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~r----------g~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~ 523 (714)
.+++++|+..|+++++++|++..++.++ |.++..+|++++|+..|+++++++|+ +..+.++|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 2455777777777777777766666555 77777777777777777777777774 556666777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
.+|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++++|.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDY------SLWNRLGATLANGDRSEEA------------------VEAYTRALEIQPGF 280 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCc
Confidence 77777777777777777777762 2333344444444444444 66677777777777
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+.+++++|.++..+|++++|+..|++|++++|+ +..++.++|.++..+|+.+.+....++++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 777777777777777777777777777777766 356667777777777777766666555443
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.6e-26 Score=246.30 Aligned_cols=245 Identities=10% Similarity=-0.059 Sum_probs=211.4
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
.++..+|.++...|++++|+..|+++++.+|+.+.+|..+|. .+++++|+..|++|++++|+++.+|.++|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 348889999999999999999999999999999999999875 3677999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELR----------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R----------~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+|++++|+..|+++++++|+ ...+..+ +.++..+|++++|+..|+++++++|+... ..+...++.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHH
Confidence 99999999999999999996 4444444 78999999999999999999999999311 224444555
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+....+++++| +..++++++++|.++.+|+++|.++..+|++++|+..|++|++++|+++.+
T Consensus 222 ~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 222 LFHLSGEFNRA------------------IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 55555666666 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHhh
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRS-------------FEAFFLKAYALA 682 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~-------------~~a~~~~~~~~~ 682 (714)
++++|.++..+|++++|+..|++|+++.|+ ..+|...|.++.
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 346777766653
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.5e-26 Score=253.84 Aligned_cols=245 Identities=10% Similarity=0.013 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHh-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGH-KLWAYEKLNSVISSVTPLGWMYQERSL- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~-~~~A~~~~~~aI~~~p~~~~ay~~rg~- 457 (714)
...+++++|.++...|++++|+..|++||+++| ..+|.++|.++..+|+ +++|+..|+++|+++|++..+|.+||.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467889999999999999999999999999954 5678899999999997 999999999999999999999999985
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH-
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA-LEDYQAA- 531 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~-lgd~e~A- 531 (714)
.+++++|+.+|++||+++|+++.+|++||.++..+|++++|+..|+++|+++|+ +.+|++||.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 367799999999999999999999999999999999999999999999999996 8999999999999 5555888
Q ss_pred ----HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 532 ----LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 532 ----l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+..|++|++++|++.. +...++.+..... ++++ ++..+.++ +.+|.++.
T Consensus 256 ~~~el~~~~~Al~l~P~~~~------a~~~l~~ll~~~g~~~~~~------------------a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNES------AWNYLKGILQDRGLSKYPN------------------LLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTTCGGGCHH------------------HHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHccCccchHH------------------HHHHHHHh-ccCCCCHH
Confidence 5999999999999943 3333332222211 2233 36677777 99999999
Q ss_pred HHHHHHHHHHHcC---------ChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLN---------CPEAAMRSLQLA-RQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 606 ~~~~~g~~L~~lg---------~~eeAl~~~~~A-l~l~P~~~ea~~~~G~~ly~~ 651 (714)
++..+|.++.++| ..++|+..|+++ ++++|.....+.++|..+..+
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999999985 358999999999 999999999999999988765
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=9.8e-26 Score=251.37 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHHHhccch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhH
Q 005106 397 KEYDEAEHLFEAAVNAGHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK 463 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~---------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~e 463 (714)
|++++|+..|+++++.+|. .++..+|.++...|++++|+..+.++++..|+ ..++..+|.. +++++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence 4666666666677666433 24677888999999999999999999999998 8888888753 56699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999996 7888889999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHH------HHHHHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF------RQSLLLLR 616 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~------~~g~~L~~ 616 (714)
|++.. +....+.+....+++++| +..++++++++|.++..+. ++|.++.+
T Consensus 375 ~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 375 PTLPE------VPTFFAEILTDRGDFDTA------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp TTCTH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred CCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 99843 344445555555666666 7889999999998887754 55688888
Q ss_pred c----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-H-----HHHHH
Q 005106 617 L----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-F-----LKAYA 680 (714)
Q Consensus 617 l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~-~-----~~~~~ 680 (714)
+ |++++|+..++++++++|++++++.++|+++..+|++++|+..|++++++.|+.... - ..+.+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI 510 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999997722 1 11222
Q ss_pred hhccCCCCCchhhHHHHHH
Q 005106 681 LADSSQDSSCSSTVVSLLE 699 (714)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~ 699 (714)
......||+-+..+.+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~ 529 (537)
T 3fp2_A 511 QKRLRADPIISAKMELTLA 529 (537)
T ss_dssp HHHHHTC------------
T ss_pred HHhccccHHHHHHHhhHHH
Confidence 2233456777776665554
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.9e-26 Score=249.88 Aligned_cols=275 Identities=16% Similarity=0.123 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHh---ccchHHHHHHHHHHHh-----c-----------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLL---RKEYDEAEHLFEAAVN-----A-----------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 383 ~~A~~~lG~~~~~---~g~y~eA~~~f~~AL~-----~-----------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
..++..+|..... .|++++|+..|+++++ + ....++..+|.++...|++++|+..++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5667788888887 8999999999999999 4 3455778899999999999999999999999
Q ss_pred cCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 005106 444 SVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (714)
Q Consensus 444 ~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R 518 (714)
..|+ +.++..+|. .++.++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 9999 888888875 356699999999999999999999999999999999999999999999999996 7888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
|.++..+|++++|+..|+++++++|++.. +....+.+....+++++| +..++++++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~a~~ 400 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKA------------------LKQYDLAIE 400 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHH
Confidence 99999999999999999999999999843 444445555555566666 788999999
Q ss_pred hCCCChh------HHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 599 SDAPKGV------LYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 599 l~P~~~~------~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++|.++. +++++|.++.. +|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999976 99999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhh
Q 005106 670 SFE-AFFLKAYALA 682 (714)
Q Consensus 670 ~~~-a~~~~~~~~~ 682 (714)
++. ++....+..+
T Consensus 481 ~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 481 TMEEKLQAITFAEA 494 (514)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 988 6666655544
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.8e-26 Score=237.79 Aligned_cols=263 Identities=10% Similarity=-0.040 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...++.+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..+.++++..|+.+.++..+|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999854 5567889999999999999999999999999999888888875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYR--------------AS-SLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~r--------------g~-~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (714)
.++.++|+..|+++++++|++...+..+ |. ++...|++++|+..++++++.+|+ +..+..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3667999999999999999999999988 77 799999999999999999999996 888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
++..+|++++|+..|+++++++|++.. +....+.+....+++++| +..++++++.+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~ 236 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQ------LWNKLGATLANGNRPQEA------------------LDAYNRALDIN 236 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcC
Confidence 999999999999999999999999843 444455555555666666 78899999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|.++.+++++|.++..+|++++|+..++++++++|+ +..++.++|.++..+|++++|...+++++++-
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 89999999999999999999999999988875
Q ss_pred C
Q 005106 669 R 669 (714)
Q Consensus 669 ~ 669 (714)
|
T Consensus 317 ~ 317 (327)
T 3cv0_A 317 A 317 (327)
T ss_dssp H
T ss_pred c
Confidence 4
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-25 Score=246.20 Aligned_cols=266 Identities=11% Similarity=-0.043 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---------c--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------H--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV------ 445 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~------ 445 (714)
+..++++|.++..+|++++|++.|++|+++. + ..++.++|.+|..+|++++|+..+++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4566789999999999999999999999861 1 2346789999999999999999999999863
Q ss_pred --CCcHHHHHHHHh----c--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 446 --TPLGWMYQERSL----Y--CEGDKRWEDLDKATALDPTLSYPYMYRASSLM---TKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 446 --p~~~~ay~~rg~----~--~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~---~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
+..+.+|.+.|. . +.+++|+..|++|++++|+++.++.++|.++. ..++.++|+..|++||+++|+ +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 345677766653 1 23599999999999999999999999999855 457889999999999999996 77
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 514 CLELRFCFFL----ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 514 ~~~~R~~~~~----~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++|..+. ..|++++|+..|+++++++|++.. +...++.+.....++++|
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A------------------ 266 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD------VLRSAAKFYRRKDEPDKA------------------ 266 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH------HHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHHcCchHHH------------------
Confidence 7777776544 457889999999999999999843 444555555566666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLR-------------------LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~-------------------lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
+..++++++++|.++.+++++|.++.. .+.+++|+..+++|++++|+++.++.++|.++..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 889999999999999999999998754 3457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+|++++|+..|++|++++|+..
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH
T ss_pred hccHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999998875
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.4e-25 Score=249.46 Aligned_cols=289 Identities=8% Similarity=-0.037 Sum_probs=250.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~ 461 (714)
..++..+...|++++|+..|+++++. +...++..+|.++...|++++|++.|+++++..|++..++..++. .++.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 33467777899999999999999886 456678889999999999999999999999999876655554432 2555
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++.+|++..+|..+|.+|...|++++|+..|+++++++|+ ...|..++.+|...|++++|+..|+++++
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++.. +...++.+....+++++| +..++++++++|.++.+|+.+|.++.+.|++
T Consensus 436 ~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 436 LFQGTHL------PYLFLGMQHMQLGNILLA------------------NEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp TTTTCSH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred hCccchH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9998743 333344444445556665 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchh
Q 005106 621 EAAMRSLQLARQH------AASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSS 692 (714)
Q Consensus 621 eeAl~~~~~Al~l------~P~~-~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~ 692 (714)
++|+..+++++++ +|++ +.++.++|+++...|++++|+..|++++++.|+.. +|+..|.++...+ --.
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~ 567 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK----IPG 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CHH
Confidence 9999999999999 6775 78999999999999999999999999999999765 9999999988765 234
Q ss_pred hHHHHHHHhhc
Q 005106 693 TVVSLLEDALK 703 (714)
Q Consensus 693 ~~~~~~~~~~~ 703 (714)
..++.++++++
T Consensus 568 ~A~~~~~~~l~ 578 (597)
T 2xpi_A 568 LAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55666666664
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.1e-25 Score=229.32 Aligned_cols=275 Identities=12% Similarity=-0.045 Sum_probs=234.3
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhC-CHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKG-HKLWAYEK 437 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G-~~~~A~~~ 437 (714)
+.+....+++.+.+..+.. ..++..++.++...|++++|+..|+++++.+| ..++..+|.++...| ++++|+..
T Consensus 37 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4566677777766544432 34566788899999999999999999999854 557888999999999 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 005106 438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (714)
Q Consensus 438 ~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~ 512 (714)
+.++++..|+.+.+|..+|.. +++++|+..|++|++++|++..++.++|.++..+|++++|+..|+++++++|+ +
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 999999999988888888753 67799999999999999999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh---hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF---EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~---~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
..+..+|.++..+|++++|+..|++++++.|..... .....+...++.+....+++++|
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------ 255 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------------------ 255 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------------------
Confidence 888999999999999999999999999997543110 11133455555555566666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCCHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSHCEE 656 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-y~~G~~ee 656 (714)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.++..+|+++ ..+|+.+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 88999999999999999999999999999999999999999999999999999999999 67777653
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.8e-25 Score=224.19 Aligned_cols=179 Identities=17% Similarity=0.105 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-----------CCHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL-----------EDYQ 529 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-----------gd~e 529 (714)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 44445555555555555555555555555555555555555555555554 45555555555555 5666
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
+|+..|+++++++|++. .+...++.+....+++++| +..++++++++ .++.++++
T Consensus 102 ~A~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYA------PLHLQRGLVYALLGERDKA------------------EASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChHHH------------------HHHHHHHHhcc-cchHHHHH
Confidence 66666666666666552 2333333333344444444 55566666666 66778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+|.++..+|++++|+..|++|++++|++++++.++|.++..+|++++|+..|+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 27
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=222.48 Aligned_cols=143 Identities=21% Similarity=0.304 Sum_probs=132.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+.+..|.|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 28 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~l~~~Yt~~~~-~~~~~ 104 (172)
T 3htm_A 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKM 104 (172)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec--CCCHHHHHHHHHHHhCCCCC-CcHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCCh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~ 321 (714)
+.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+...+..
T Consensus 105 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s 170 (172)
T 3htm_A 105 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999985 7999999999999999999999999999999876543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.1e-24 Score=223.64 Aligned_cols=246 Identities=15% Similarity=0.043 Sum_probs=217.4
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
..+..+|..+...|++++|+..++++++.+|+.+.++..+|. .++.++|+..|+++++++|++..+|.++|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999888874 3677999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELR--------------FC-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R--------------~~-~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+|++++|+..|+++++.+|+ ...+..+ +. ++...|++++|+..|+++++++|++. .+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 175 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA------QLH 175 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH------HHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH------HHH
Confidence 99999999999999999996 4545444 54 68899999999999999999999973 344
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
..++.+....+++++| +..++++++.+|.++.+++++|.++..+|++++|+..++++++++|
T Consensus 176 ~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSA------------------AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555666666 8899999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------HH-HHHHHHHHhhccC
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------------FE-AFFLKAYALADSS 685 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~------------~~-a~~~~~~~~~~~~ 685 (714)
++..+++++|.+++.+|++++|+..|++++++.|+ .. +|+..|.++....
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999 55 9999999887654
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=215.71 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
.+.++..+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..++++++..|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 46677888999999999999999999888774 455677788888888887777776666555544321
Q ss_pred hhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+. +.+|.++|.++..+|++++|+..|+++++++|+.. ++..+|++++|+..+++
T Consensus 73 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 73 ---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHH
Confidence 111 57778888888888888888888888888887743 45566778888888888
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++.+|++. .+....+.+....+++++| +..++++++.+|.++.+++++|.++..+
T Consensus 131 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 131 EAYVNPEKA------EEARLEGKEYFTKSDWPNA------------------VKAYTEMIKRAPEDARGYSNRAAALAKL 186 (258)
T ss_dssp HHHCCHHHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCcchH------HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 888888763 3444444444555555555 6778888888888889999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCHH-HHHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK------RSFE-AFFL 676 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~------~~~~-a~~~ 676 (714)
|++++|+..++++++++|++++++.++|.++..+|++++|+..|++++++. |+.. ++..
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 6665 4433
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=9e-24 Score=222.42 Aligned_cols=249 Identities=18% Similarity=0.135 Sum_probs=209.3
Q ss_pred HHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH
Q 005106 393 RLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~---a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl 465 (714)
.+..|+|.+|+..+++.....|.. +...++++|..+|+++.|+..+++. .|+...++...+.+ ++.++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 456899999999999877765543 5577899999999999999988652 55555666655442 4569999
Q ss_pred HHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 466 EDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 466 ~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
..|+++++. +|+++.+++.+|.++...|++++|+..|++ | +++++..++.++..+|++++|+..|+++++++
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999875 699999999999999999999999999999 6 58888999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
|++.... + +.+|..++.. .+++. |+..|+++++.+|.++.+|+++|.++.++|+++
T Consensus 161 p~~~~~~-------l-------------~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 161 EDATLTQ-------L-------------ATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp TTCHHHH-------H-------------HHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCcHHHH-------H-------------HHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9973211 0 1122222211 12222 488999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCHH
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSFE 672 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i~~~~~ 672 (714)
+|+..+++|++++|+++++++++|.++..+|+.+++ ...++++++++|+..
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999875 578899999999987
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=5.3e-24 Score=213.46 Aligned_cols=186 Identities=17% Similarity=0.036 Sum_probs=167.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
.|+++.+|+++|.++...|++++|+..|+++|+++|+ +.++.++|.++..+|++++|+..|+++++++|++..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 74 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------ 74 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------
Confidence 3889999999999999999999999999999999996 899999999999999999999999999999999954
Q ss_pred HHHHHHHHHHhh-----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 005106 554 ASQLHMLVREHI-----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 554 a~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee 622 (714)
+...++.+.... +++++| +..++++++++|+++.+|+++|.++..+|++++
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 344444444444 555555 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
|+..|++|++++ +++++++++|.++..+|++++|+..|+++++++|++. ++++.|.++....
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999 9999999999999999999999999999999999988 9999999987754
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.6e-24 Score=218.60 Aligned_cols=231 Identities=12% Similarity=-0.011 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCc-HHHHHHHHh-
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPL-GWMYQERSL- 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~~-~~ay~~rg~- 457 (714)
..++.+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..++++++.. +.. +.+|..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3456788888888899999999998888854 4467788888888888888888877777722 111 222333332
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
.++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|......+++++|+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 133355555555555555555555555555555555555555555555555553 4444445522222234444444
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (714)
. ++++++++|.++.+++++|.+
T Consensus 164 ~----------------------------------------------------------~~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 164 S----------------------------------------------------------FVKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp H----------------------------------------------------------HHHHHHHSTTCHHHHHHHHHH
T ss_pred H----------------------------------------------------------HHHHHHhCccchHHHHHHHHH
Confidence 4 455555555555556666666
Q ss_pred HHHcCC---hHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 614 LLRLNC---PEAAMRSLQLARQHA---ASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 614 L~~lg~---~eeAl~~~~~Al~l~---P~~-----~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+..+|+ +++|+..|++|+++. |+. .+++.++|.++..+|++++|+..|+++++++|+++
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 666666 666666666666665 432 25666666666666666666666666666666665
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=1.4e-23 Score=213.15 Aligned_cols=238 Identities=9% Similarity=-0.068 Sum_probs=196.2
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--c---hhhHhhHHHHHHHhCCHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--H---IYSIAGLARLGYIKGHKLWAY 435 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~---~~a~~~lg~~~~~~G~~~~A~ 435 (714)
+.+.....++.+++..+.. ..+++.+|.++...|++++|+..|+++++.. + ..++..+|.++..+|++++|+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 4556777787766655432 3478899999999999999999999999952 1 224788999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 436 EKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA-SSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 436 ~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg-~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
..|+++++.+|+.+.+|.++|. .+++++|+..|++|++++|+++.+|.++| .++. .+++++|+..|+++++++|
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999988875 36779999999999999999999999999 5555 5599999999999999999
Q ss_pred C-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 005106 511 A-LECLELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (714)
Q Consensus 511 ~-~~~~~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d 586 (714)
+ +..+..+|.++..+|+ +++|+..|++++++...... . .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~----------------~----------------- 216 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----K----------------Y----------------- 216 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG----G----------------G-----------------
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc----c----------------c-----------------
Confidence 7 7888899999999999 89999999999988644310 0 0
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
.+....+++++|.++..+|++++|+..+++|++++|++..+.-.+|++.-..|
T Consensus 217 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 217 -------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 00113568889999999999999999999999999999999999988875544
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=4.7e-24 Score=230.25 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPL 448 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~ 448 (714)
.....++.+|..+...|++++|+..|++|+++++. .++..+|.++..+|++++|+..+++++++ .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 45677789999999999999999999999998544 46788999999999999999999999998 5666
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005106 449 GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPYMYRASSLMTKQN-----------------VEAALAE 501 (714)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~ay~~rg~~l~~l~r-----------------~~eAl~~ 501 (714)
+.++..+|. .+++++|+..|++|+++ .|....+|.++|.++..+|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 677777764 25669999999999999 78888999999999999999 9999999
Q ss_pred HHHHHhcCC------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 502 INRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 502 ~~kAL~l~P------~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
|++++++.+ . ...+.++|.++..+|++++|+..|++++++.|++........+...++.+....+++++|
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--- 282 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA--- 282 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH---
Confidence 999998742 1 346777899999999999999999999999987543333344555555555555566555
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV 642 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 642 (714)
+..+++++++.|.. +.++.++|.++..+|++++|+..+++|+++.++. +.++.
T Consensus 283 ---------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 283 ---------------AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 78899999998865 7889999999999999999999999999997765 45999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 005106 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~ 689 (714)
++|.++..+|++++|+..|++|+++.++...-...+-..-+++.+.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 394 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXXXXXXXXXXX 394 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999988866666666655554443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-23 Score=208.22 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=202.3
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc---------hhhHhh
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---------IYSIAG 420 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---------~~a~~~ 420 (714)
.+..+..... +.+.....++.+.... ....+++.+|.++...|++++|+..|++++++.+ ..++..
T Consensus 10 ~~g~~~~~~~-~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 10 AEGNKFYKAR-QFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3444444432 5667777887766654 3467889999999999999999999999999854 467889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
+|.++...|++++|+..+++++.+.|+ +..+...|.+ ++|+..|++++..+|+++.+|.++|.++..+|++++|+.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999876 8889999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 005106 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (714)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (714)
.|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------- 206 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------------------------- 206 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH----------------------------------
Confidence 99999999996 8888999999999999999999888888877775
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChhHHHHHHHH
Q 005106 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWI 647 (714)
Q Consensus 580 ~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~------P~~~ea~~~~G~~ 647 (714)
+.+|+++|.++..+|++++|+..+++|++++ |++.+++..++.+
T Consensus 207 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 ------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3567889999999999999999999999999 9998888777654
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.5e-23 Score=201.95 Aligned_cols=174 Identities=11% Similarity=0.084 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+..|+++|.++..+|++++|+..|++||+++|+ +.++..+|.++..+|++++|+..+++++..+|++.. +.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------AY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------HH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------HH
Confidence 45678888888888888888888888888888885 788888888888888888888888888888888733 34
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
...+.+.....+++.| ...+.+++.++|.++.+++.+|.++.++|++++|+..|+++++++|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 4444444455555555 6778888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
+++++++++|.++..+|++++|+..|++|++++|+.+-|
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 999999999999999999999999999999999987544
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=227.39 Aligned_cols=285 Identities=12% Similarity=-0.035 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ 450 (714)
..++..+|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+++++.+ .|..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456788999999999999999999999998543 46778999999999999999999999887 344566
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQN--------------------VEAALA 500 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r--------------------~~eAl~ 500 (714)
++..+|. .+++++|+..|++|+++.|.. +.++.++|.++..+|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6666654 256699999999999998876 4599999999999999 999999
Q ss_pred HHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 005106 501 EINRILGF------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (714)
Q Consensus 501 ~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (714)
.|++++++ .|. ...+.++|.++..+|++++|+..|++++++.|+.........+...++.+....+++++|
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-- 246 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 246 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH--
Confidence 99999987 222 456778899999999999999999999999887643333344555555555556666665
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 005106 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (714)
Q Consensus 574 ~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (714)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.+.. +.++
T Consensus 247 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 247 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 78899999998887 8899999999999999999999999999997766 6799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHHHHHHhhccC
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFLKAYALADSS 685 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------~-a~~~~~~~~~~~~ 685 (714)
.++|.++..+|++++|+..|++|+++.+.. . +++..|.++...+
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999984332 2 7777777664443
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=2.1e-23 Score=214.93 Aligned_cols=271 Identities=12% Similarity=-0.023 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ 450 (714)
...++..|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+++++.+ .+..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 356678899999999999999999999998543 46778999999999999999999999887 344456
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCC--------------------HHHHHH
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQN--------------------VEAALA 500 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~------ay~~rg~~l~~l~r--------------------~~eAl~ 500 (714)
++..+|. .+++++|+..|++|+++.|.... ++.++|.++..+|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6666654 25669999999999999887644 99999999999999 999999
Q ss_pred HHHHHHhcC------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 005106 501 EINRILGFK------LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (714)
Q Consensus 501 ~~~kAL~l~------P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (714)
.+++++.+. |. ...+.++|.++..+|++++|+..|++++++.|..........+....+.+....+++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-- 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH--
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--
Confidence 999999872 22 345677899999999999999999999999876533233334555555555555666666
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 005106 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (714)
Q Consensus 574 ~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (714)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.|.. ..++
T Consensus 243 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 243 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77899999988877 7899999999999999999999999999998776 4499
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.++|.++..+|++++|+..|++|+++.++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.91 E-value=3.3e-24 Score=228.50 Aligned_cols=142 Identities=21% Similarity=0.307 Sum_probs=126.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|.|+|++|+|||.|||++||||++||.++|.|+...+|+|++ +++++|+.+|+|+|||+++ ++.++
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt~~~~-~~~~~ 244 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM 244 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHHSCCT-THHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcCCCCC-ChHHH
Confidence 34678899999999999999999999999999999999999999999999994 9999999999999999999 88999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCC
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (714)
+.+||.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|++++..|+...+.
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999985 799999999999999999999999999999876554
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=3.2e-23 Score=210.16 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=194.9
Q ss_pred HHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----c
Q 005106 389 LGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----Y 458 (714)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~ 458 (714)
++......|++++|+..|+++++. +...++..+|.++...|++++|+..|.++++.+|+.+.+|..+|. .
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 344455678999999999999986 235578889999999999999999999999999998888888875 3
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+.........+....|++++|+..|+++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999997433333334456779999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLL 614 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~----~~~~~~~g~~L 614 (714)
+...|++........ +..... +..+|+..+.++++.+|.. +.+++++|.++
T Consensus 171 ~~~~~~~~~~~~~~~-------~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVE-------FYLGNI------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHSCCCSTHHHHHH-------HHTTSS------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHH-------HHHHhc------------------CHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 999998743221111 011111 1122477788887777743 78999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.++|++++|+..+++|++++|++... .|.++..+|++++|+..|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999987654 488999999999999887
No 41
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=9.4e-25 Score=206.30 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=96.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+.+..|+++ ++++++|+.+++|+|||+++ ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~-~~~~~ 95 (145)
T 4eoz_A 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKM 95 (145)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec--CCCHHHHHHHHHhhccCccC-CcHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~ 304 (714)
+.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|++..|.
T Consensus 96 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 96 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhc
Confidence 99999999999999999999999999985 89999999999999998875
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=1.7e-22 Score=227.01 Aligned_cols=213 Identities=13% Similarity=-0.022 Sum_probs=188.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh-hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG-DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~-~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~ 502 (714)
.+..++|+..+.+.....|+.+.+|+.+|. .+++ ++|+..|++|++++|+++.+|+++|.+|..+|++++|+..|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344566777777777778888888888875 3677 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------
Q 005106 503 NRILGFKLALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------- 565 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~l---------gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-------- 565 (714)
++|++++|++..+.++|.++..+ |++++|+..|+++++++|++.. +...++.+....
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHhhcccc
Confidence 99999999988888999999999 9999999999999999999843 444444444444
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
+++++| +..|+++++++| .++.+|+++|.++..+|++++|+..|++|++++|++.+++.
T Consensus 235 g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 235 KISQQA------------------LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHH------------------HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHH------------------HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555 889999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005106 643 YEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~A 664 (714)
++|.++..+|++++|+..|++.
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999888665
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=3.2e-21 Score=197.76 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
...+++.+|..+...|++++|+.+|++|++.++..++..+|.++.. .|++++|+..|.++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3567889999999999999999999999999889999999999998 888888777776665543
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQ 529 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e 529 (714)
++.+++++|.++.. .+++++|+..|++|++.+ ++.++.++|.+|.. .|+++
T Consensus 73 --------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 73 --------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp --------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred --------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHH
Confidence 44455555555555 555555555555555543 34555555555555 55555
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+|+..|++++++++.. +...++.+... ..++++| +..++++++. +++.
T Consensus 132 ~A~~~~~~a~~~~~~~--------a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 132 KAVEYFTKACDLNDGD--------GCTILGSLYDAGRGTPKDLKKA------------------LASYDKACDL--KDSP 183 (273)
T ss_dssp HHHHHHHHHHHTTCHH--------HHHHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHhcCcHH--------HHHHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHH
Confidence 5555555555554221 11112211111 2222222 4555555555 3467
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 606 LYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 606 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
+++++|.++.. .+++++|+..+++|++..| +++++++|.++.. .|++++|+..|++|+++.|+...+.+.
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78899999999 9999999999999999976 8999999999999 999999999999999999998866655
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=6.8e-22 Score=196.56 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=154.6
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
.|..+...|++ ++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+ ...+..+|.++..+|
T Consensus 29 ~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 29 QMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 34444444444 67777777777777777778888888888888888888888888887775 666777777777888
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++++|++.. +....+.+....+++++| +..++++++.+|.++.+
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~ 161 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDTEA 161 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHH------HHHHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccHHH
Confidence 888888888888888877632 333334344444444444 66778888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
++++|.++..+|++++|+..++++++.+|+++.++.++|.+++.+|++++|+..|++++++.|++. +++..+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 77776654
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=1.2e-22 Score=239.97 Aligned_cols=175 Identities=11% Similarity=-0.020 Sum_probs=153.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-.|+++.+|+++|.+|.++|++++|+..|++||+++|+ +.+++++|.+|..+|++++|+..|++|++++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~------ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA------ 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Confidence 46888889999999999999999999999999999996 78888889999999999999999999999999883
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
.++..++.+....+++++| +..|++||+++|+++++|+++|.++..+|++++|+..|++|++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555556666666666666 7788999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++|++++++.++|.++..+|++++|.+.|++++++.|+..
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 9999999999999999999999999999999999987653
No 46
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=185.37 Aligned_cols=103 Identities=19% Similarity=0.379 Sum_probs=92.2
Q ss_pred cCCCCCccEEEEEcC----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC
Q 005106 176 SGDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (714)
Q Consensus 176 ~~~~~~~DV~l~v~~----~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~ 251 (714)
.+++.+|||+|+|+| ++|+|||.||+++|+||++||.++|.|+. ..|.|+ ++++++|+.+|+|+|||++. ++
T Consensus 3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~--~~~~~~f~~~l~~iYt~~~~-~~ 78 (109)
T 2vkp_A 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP--DVEPAAFLILLKYMYSDEID-LE 78 (109)
T ss_dssp TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET--TSCHHHHHHHHHHHHHCCCC-CC
T ss_pred ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC--CCCHHHHHHHHHHHcCCCcc-CC
Confidence 468889999999988 89999999999999999999999999998 999999 49999999999999999999 99
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 252 PNLLLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 252 ~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998753
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=7.8e-22 Score=189.95 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...|+++|.++..+|+|++|+..|++||+++ +..++.++|.++..+|++++|+..+.+++...|+.+.++...|.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4568899999999999999999999999995 45678899999999999999999999999999999999988875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
.++.++|+..+.+|++++|++..++..+|.++..+|++++|+..|+++++++|+ +.++.++|.+|..+|++++|+..|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHhhCCCch
Q 005106 536 QAILTLSPDYR 546 (714)
Q Consensus 536 ~~al~L~P~~~ 546 (714)
++|++++|+++
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999974
No 48
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=6.3e-21 Score=200.67 Aligned_cols=244 Identities=11% Similarity=-0.016 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHh----
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQERSL---- 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~~~ay~~rg~---- 457 (714)
.+...++.++...|++++|+..++.. ......++..++..+...|++++|++.+++++.. +|+++.++..+|.
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 34566788999999999999988662 2233446667888999999999999999999976 6998888888875
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHH--HHHHhcCCHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRF--CFFLALEDYQAALCD 534 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~--~~~~~lgd~e~Al~d 534 (714)
.++.++|+..|++ |++..++..+|.++..+|++++|+..|+++++++|+. ......+ .++...|++++|+..
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3677999999998 9999999999999999999999999999999999973 2222234 344566999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
|+++++.+|++. .+...++.+....+++++| ...++++|+++|+++++++++|.++
T Consensus 189 ~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA------------------~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 189 FQEMADKCSPTL------LLLNGQAACHMAQGRWEAA------------------EGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHSCCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999983 4566666666777788887 7899999999999999999999999
Q ss_pred HHcCChHH-HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 615 LRLNCPEA-AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 615 ~~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
..+|+.++ |.+.++++++++|+++.+.. ..-+.+.||++...|
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 99999976 56888999999999999876 466778888888877
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=2.2e-21 Score=217.98 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV-EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~-~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
++++..++++...+|+.+.+|+++|.++..+|++ ++|+..|++|++++|+ +.++.++|.+|..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 9999999999999996 8999999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhh---------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~ 610 (714)
+++|+. . +...++.+.... +++++| +..++++++++|.++.+|+++
T Consensus 165 ~~~p~~-~------~~~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKNK-V------SLQNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCCH-H------HHHHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCCH-H------HHHHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 999993 2 344444444444 555555 889999999999999999999
Q ss_pred HHHHHHc--------CChHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 611 SLLLLRL--------NCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 611 g~~L~~l--------g~~eeAl~~~~~Al~l~P---~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
|.++..+ |++++|+..|++|++++| +++++++++|.+++.+|++++|+..|++|++++|++. +++..|
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999 999999999999999999 9999999999999999999999999999999999998 899888
Q ss_pred HHhhc
Q 005106 679 YALAD 683 (714)
Q Consensus 679 ~~~~~ 683 (714)
.++..
T Consensus 300 ~~~~~ 304 (474)
T 4abn_A 300 QLLEF 304 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=7.3e-21 Score=200.34 Aligned_cols=231 Identities=10% Similarity=-0.041 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHh-cCC
Q 005106 400 DEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA-LDP 476 (714)
Q Consensus 400 ~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~-LdP 476 (714)
++|+..|++||+.+ +..+|..+|.++...|+. +... |.....++.+ ++|+..|++|++ ++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~---g~~~~~~~~~---~~A~~~~~rAl~~~~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEK---GDMNNAKLFS---DEAANIYERAISTLLK 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHT---SCCHHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhc---cchhhcccch---HHHHHHHHHHHHHhCc
Confidence 67778888887773 444566666666543221 0000 0000111222 899999999999 799
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
++..+|.++|.++..+|++++|+..|+++|+++|+ +. .|.+.+.++...|++++|+..|++|++++|.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----- 171 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY----- 171 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-----
Confidence 99999999999999999999999999999999996 65 788899999999999999999999999999874321
Q ss_pred HHHHHHHHH-hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 555 SQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.+.. ..+++++ |..+|+++|+.+|.++.+|.+.|..+.++|++++|+..|++|++.
T Consensus 172 -~~~a~~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 172 -VTAALMEYYCSKDKSV------------------AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -HHHHHHHHHTSCCHHH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111111 1233333 478999999999999999999999999999999999999999996
Q ss_pred ---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 634 ---AAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 634 ---~P~-~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.|+ +...+...+..+...|++++|...+++++++.|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 564 7778888999999999999999999999999997
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=2.4e-21 Score=196.23 Aligned_cols=222 Identities=14% Similarity=0.030 Sum_probs=190.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 424 LGYIKGHKLWAYEKLNSVISSV----TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 424 ~~~~~G~~~~A~~~~~~aI~~~----p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.....|++++|+..|+++++.. |..+.+|..+|. .+++++|+..|++|++++|+++.+|.++|.++..+|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999973 456777777764 36679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++..... ... +....+++++|
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~~~~~A--- 163 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL------WLY-LAEQKLDEKQA--- 163 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------HHH-HHHHHHCHHHH---
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH------HHH-HHHHhcCHHHH---
Confidence 9999999999999996 888999999999999999999999999999999853221 111 11222444444
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD 650 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~ 650 (714)
+..+++++...|.+...+. .+.++...+..++|+..++++++.+|.. ++++.++|.+++.
T Consensus 164 ---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 164 ---------------KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp ---------------HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 7889999999999988765 7777788888999999999999998854 8999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCH
Q 005106 651 TSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+|++++|+..|+++++++|+.
T Consensus 228 ~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 228 LGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TTCHHHHHHHHHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHhCCchh
Confidence 999999999999999999954
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.7e-21 Score=192.22 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
...+++.+|..+...|++++|+..|+++++.++ ..++..+|.++...|++++|+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------------------- 80 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFY--------------------- 80 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH---------------------
Confidence 356678888888888888888888888888744 445666777777777766665554
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+++++++|++..+|..+|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++
T Consensus 81 ---------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 81 ---------DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ---------HHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555556666666666777777777777777777777777664 566666667777777777777777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++.. +....+.+....+++++| +..++++++.+|.++.+++++|.++..+|
T Consensus 152 ~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 152 VELNENDTE------ARFQFGMCLANEGMLDEA------------------LSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHCTTCHH------HHHHHHHHHHHHTCCHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCCccHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 777776532 223333333333333333 56677777777777888999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
++++|+..++++++++|++..++..++.+....|+
T Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 208 NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999888766654
No 53
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.87 E-value=1.1e-22 Score=186.58 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=92.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+....|+++ ++++++|+.+++|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~ll~~~Yt~~~~-~~~~~ 95 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID--FVSAEALTALMDFAYTATLT-VSTAN 95 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKL 278 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L 278 (714)
+.+++.+|++|+++.|++.|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999997
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=207.34 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=225.0
Q ss_pred CchhHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCH
Q 005106 361 RSDKTVCFLERLLESAETD-RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHK 431 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~-lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~a~~~lg~~~~~~G~~ 431 (714)
+.+....+++++....+.. .....+++.+|.++...|++++|+..|++|+++. ...++..+|.++...|++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 5667778888877654433 2335678999999999999999999999998771 244678899999999999
Q ss_pred HHHHHHHHHHHhcCCC-------------cHHHHHHHHhcCC-----------------hhHHHHHHHHHHhc------C
Q 005106 432 LWAYEKLNSVISSVTP-------------LGWMYQERSLYCE-----------------GDKRWEDLDKATAL------D 475 (714)
Q Consensus 432 ~~A~~~~~~aI~~~p~-------------~~~ay~~rg~~~~-----------------~~eAl~d~~kAi~L------d 475 (714)
++|+..+.+++++.+. .|..|..+|.+.. +++|+..|++|+++ .
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999997553 3444455555000 49999999999998 6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
|..+.+|.++|.++..+|++++|+..|++++++.|. . ..+.++|.++..+|++++|+..|++++++.|+....
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 667789999999999999999999999999998653 2 267789999999999999999999999998876433
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~ee 622 (714)
.....+....+.+....+++++| +..+++++++.|.. +.++.++|.++..+|++++
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKA------------------IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 33444555566666666666666 77889999887665 6789999999999999999
Q ss_pred HHHHHHHHHHhC------CCChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCHH
Q 005106 623 AMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEE-GLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al~~~~~Al~l~------P~~~ea~~~~G~~ly~~G~~ee-Al~~ye~Ai~i~~~~~ 672 (714)
|+..+++|+++. |....++..+|.++..+|+..+ +....++...++.+.+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 382 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999994 4457899999999999998854 3333444444444433
No 55
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.87 E-value=2.8e-22 Score=185.81 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=97.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEe-CCCCCCHHHHHHHHHhhccCCCCCCCHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPN 253 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l-~~~~i~~~~~~~lL~f~Ytg~l~~i~~~ 253 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.+++.| .+..|+| + ++++++|+.+|+|+|||++. ++.+
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~ 98 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREG 98 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHH
Confidence 4568889999999999999999999999999999999999999 7789999 6 59999999999999999999 9999
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 254 LLLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 254 ~v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
++.+++.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.3e-20 Score=188.09 Aligned_cols=168 Identities=10% Similarity=0.083 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP-~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
++++|+..|++|++++| .+..+++++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33555555555555555 55555555555555555566666556665555554 45555555555555555555555555
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++++|++..+. .. .+.+|+++|.++..+
T Consensus 102 al~~~p~~~~~~------~~---------------------------------------------~~~~~~~~g~~~~~~ 130 (228)
T 4i17_A 102 GIKAVPGNATIE------KL---------------------------------------------YAIYYLKEGQKFQQA 130 (228)
T ss_dssp HHHHSTTCHHHH------HH---------------------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHCCCcHHHH------HH---------------------------------------------HHHHHHHHhHHHHHh
Confidence 555555552100 00 014678888888888
Q ss_pred CChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 005106 618 NCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHC---------------------------EEGLRKAEESIQMK 668 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~G~~---------------------------eeAl~~ye~Ai~i~ 668 (714)
|++++|+..|++|++++|+ ++++++++|.+++.+|+. ++|+..|++|++++
T Consensus 131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888888 888888888888888888 99999999999999
Q ss_pred CCHH-HHHHHH
Q 005106 669 RSFE-AFFLKA 678 (714)
Q Consensus 669 ~~~~-a~~~~~ 678 (714)
|+.. +..+.+
T Consensus 211 p~~~~~~~~l~ 221 (228)
T 4i17_A 211 PNRTEIKQMQD 221 (228)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 9987 544443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=5.3e-20 Score=184.88 Aligned_cols=188 Identities=14% Similarity=0.029 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..++.++..+|++++|+..|+++++
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44444555555555555556666666666666666666666666666553 45555555556666666666666666665
Q ss_pred --hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 541 --LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 541 --L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
.+|++. .+...++.+....+++++| +..++++++.+|.++.+++.+|.++..+|
T Consensus 134 ~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 134 DTLYPERS------RVFENLGLVSLQMKKPAQA------------------KEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp CTTCTTHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CccCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 444431 1222223233333333333 45566666666666778889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
++++|+..++++++.+|++.+++..+|.++..+|++++|...+++++++.|+...
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999999999999999999999998773
No 58
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.86 E-value=1.9e-22 Score=190.01 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=99.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|.+++ ++++++|+.+|+|+|||++. ++.++
T Consensus 30 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~-~v~~~~~~~lL~~~Ytg~~~-i~~~~ 105 (138)
T 2z8h_A 30 QRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPE-EVTVKGFEPLIQFAYTAKLI-LSKDN 105 (138)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCT-TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCC-CCCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 45678899999999999999999999999999999999999774 5788853 69999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASRED 287 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n 287 (714)
+.+|+.+|++|+++.|++.|++||.+.++ .+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 99999999999999999999999999885 344
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1e-18 Score=195.56 Aligned_cols=318 Identities=10% Similarity=-0.084 Sum_probs=219.3
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW 433 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~ 433 (714)
.+....+++++.+. ....+.+.+|..+.. .+++++|+.+|++|++.++..++..+|.+|.. .+++++
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555566554432 235677778888887 78888888888888888777788888888877 778888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE 501 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~--------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~ 501 (714)
|+.+|+++++.. .+.++.++|. -.+.++|+..|++|++. +++.+++++|.+|.. .+++++|+..
T Consensus 134 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 134 SVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888877653 4555555543 23457888888888775 577888888888887 7888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHH-
Q 005106 502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIAD- 572 (714)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~- 572 (714)
|+++++.. ++.+.+.+|.+|.. .+|+++|+..|+++++..+... ...++.+... ..++++|.
T Consensus 210 ~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 210 YRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA--------QFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHCCCCCCCCHHHHHH
Confidence 88887643 46666777777775 7788888888888877644321 1111111111 12222221
Q ss_pred ------------HHHhhhhccccc-----cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 005106 573 ------------CWLQLYDRWSSV-----DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLAR 631 (714)
Q Consensus 573 ------------~~~~l~~~~~~~-----~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al 631 (714)
++..+....... .+.. |+..++++++. +++.+++++|.++...| ++++|+..|++|+
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 222222222111 3444 78899998876 67789999999999877 7889999999999
Q ss_pred HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
+. +++++++++|++++. .+++++|+..|++|++.. +..++++.|..+....--+..-..-+..++.|+
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 87 689999999999999 899999999999999875 456889999988764212333344455555554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=6.3e-21 Score=205.72 Aligned_cols=266 Identities=12% Similarity=-0.049 Sum_probs=220.0
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHH
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG----WMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYP 481 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~----~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~a 481 (714)
..+..+|..+...|++++|+..|+++++..|+.. .+|..+|. .+++++|+..|++|+++ +|..+.+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3456789999999999999999999999999864 56767664 26669999999999999 7999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALED-----------------YQAALCDVQA 537 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd-----------------~e~Al~d~~~ 537 (714)
|.++|.++..+|++++|+..|++++++ .|. ..++.++|.++..+|+ +++|+..|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998 443 5567889999999999 9999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQS 611 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~------~~~~~g 611 (714)
++++.+....-.....+...++.+....+++++| +..+++++++.|.... +++++|
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA------------------IEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9988654322222334555555555555555555 7889999999887766 999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKA 678 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~-------~a~~~~~ 678 (714)
.++..+|++++|+..+++|+++.|.. +.++.++|.++..+|++++|+..|++++.+.+.. .+++..|
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999999999966 7899999999999999999999999999986543 2788888
Q ss_pred HHhhccCCCCCchhhHHHHHHHhhc
Q 005106 679 YALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.++.... .-..-+..+++|++
T Consensus 351 ~~~~~~g----~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 351 NAHSAIG----GHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHhc----cHHHHHHHHHHHHH
Confidence 8877653 23455666666664
No 61
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=189.00 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=91.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCc--CCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~E--s~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| +...+|.|+ ++++++|+.+|+|+|||++. ++.
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~ 117 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 117 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCH
Confidence 5678999999999999999999999999999999999999876 667889998 49999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+++.+|+.+|++|+++.|++.|++||.
T Consensus 118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999998863
No 62
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.7e-18 Score=192.24 Aligned_cols=288 Identities=10% Similarity=-0.048 Sum_probs=192.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWA 434 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A 434 (714)
+....+++++.+. ....+.+++|..+.. .+++++|+.+|++|++.++..++.++|.+|.. .+++++|
T Consensus 96 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 96 AQAVIWYKKAALK-----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3445555553332 124556667777766 66777777777777777777777777777766 6677777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 005106 435 YEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEI 502 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~--------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~ 502 (714)
+.+|.++++. +++.++.++|. ..+.++|+..|++|++. .++.+++++|.+|.. .+++++|+..|
T Consensus 171 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 171 REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7777777765 34455555443 23446777777777664 456677777777775 67777777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-----hhhhHHHH
Q 005106 503 NRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-----DNWTIADC 573 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-----~~~~~A~~ 573 (714)
+++++.. ++.+++.+|.+|.. .+|+++|+..|+++++.++.. +...++.+.... +++++|.-
T Consensus 247 ~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--------a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 247 SQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--------GQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 7777542 35556666766666 677777777777776653222 111122221111 22222222
Q ss_pred -------------HHhhhhcccc---ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 005106 574 -------------WLQLYDRWSS---VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQ 632 (714)
Q Consensus 574 -------------~~~l~~~~~~---~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~ 632 (714)
+..++..... ..+.. |+..++++++. +++.+++++|.++.. .+++++|+..|++|++
T Consensus 318 ~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 318 WYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 2222222111 11333 78899999987 789999999999999 9999999999999998
Q ss_pred hCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHH
Q 005106 633 HAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.. ++++++++|++++. .|++++|+..|++|+++.|+..
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 64 79999999999999 9999999999999999998743
No 63
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=6.8e-20 Score=195.17 Aligned_cols=227 Identities=7% Similarity=-0.100 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHhc----C--ChhHHHHHHHHHHhcCCCChHHHHHHHHHH----Hhc---CCHHHH
Q 005106 432 LWAYEKLNSVISSVTPLGWMYQERSLY----C--EGDKRWEDLDKATALDPTLSYPYMYRASSL----MTK---QNVEAA 498 (714)
Q Consensus 432 ~~A~~~~~~aI~~~p~~~~ay~~rg~~----~--~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l----~~l---~r~~eA 498 (714)
++|++.++++|.++|++..+|+.||.. + .+++++..+++++.++|.+..+|++|+.++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 467777777777777777777777642 3 668888888888888888888898888888 666 788899
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh------hh
Q 005106 499 LAEINRILGFKL-ALECLELRFCFFLALEDYQ--AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN------WT 569 (714)
Q Consensus 499 l~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e--~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~------~~ 569 (714)
+..++++|+.+| ++.+|+.|++++..+|+++ +++..+++++++||.|.. |.+.++.+...... ++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s------AW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS------AWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccchhhhHH
Confidence 999999999988 4888888998888888888 889999999999998732 33333333333222 22
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHhC---CCChhHHHHHH
Q 005106 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA-AMRSLQLARQHA---ASDHERLVYEG 645 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~---P~~~ea~~~~G 645 (714)
+ ++..++++|..+|++..+|++++.++.++|+..+ ....+.+++.++ |.+..|+..++
T Consensus 204 e------------------El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 204 E------------------ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp H------------------HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred H------------------HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 2 3889999999999999999999999999999666 445777788887 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhh
Q 005106 646 WILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALA 682 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~-i~~~~~-a~~~~~~~~~ 682 (714)
-++..+|+.++|+..|++++. ++|--. .|..|+-.|.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 999999999999999999997 899988 7777775553
No 64
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.85 E-value=3.8e-22 Score=183.09 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=91.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||.+++ +..|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~ 90 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGN 90 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 34678899999999999999999999999999999999987 5789999 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|++||.+
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 91 RDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 65
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2e-19 Score=175.90 Aligned_cols=200 Identities=10% Similarity=-0.074 Sum_probs=128.5
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~ 490 (714)
..++..+|.++...|++++|+..+.++++..|+.+.+|..+|. .++.++|+..|+++++++|++..+|.++|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4455666666666666666666655555555544444444432 133344444444444444444444444444444
Q ss_pred hc-CCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 491 TK-QNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 491 ~l-~r~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
.. |++++|+..|+++++ .+|+ ...+..+|.++..+|++++|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------------------------------- 134 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA--------------------------------- 134 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH---------------------------------
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH---------------------------------
Confidence 44 444444444444444 2232 3334444444444444444444
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEG 645 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-~~~ea~~~~G 645 (714)
.++++++.+|.++.+++++|.++..+|++++|+..++++++++| ++..++...+
T Consensus 135 -------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 135 -------------------------YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp -------------------------HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred -------------------------HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45555555566666788899999999999999999999999999 9999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++...|+.++|...+++++.+.|+..
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999998999877
No 66
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.85 E-value=4.3e-20 Score=198.39 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=181.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~ 528 (714)
++|+..++++|.++|++..+|++|+.++..+++ +++++..++++|..+|. +.+|+.|++++..+| ++
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 688999999999999999999999999988877 68999999999999994 899999999999998 48
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
++++..++++++++|.|.. +...++-+...... +++ ++..++++|+.+|++..+|
T Consensus 127 ~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l~~~~~e------------------el~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 127 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHH------------------HHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCcCHHH------------------HHHHHHHHHHHCCCCHHHH
Confidence 9999999999999998843 22222222222222 222 4888999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 005106 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----------SHCEEGLRKAE 662 (714)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-----------G~~eeAl~~ye 662 (714)
++++.++..+ +.+++++..+.+|+.++|+|..+++|+.|++... +.+++++..++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999998 5688999999999999999999999888888877 56899999999
Q ss_pred HHHhcCCCHHHHHHHHHHhhccCCCCCchh-hHHHHHHHhhcCCCCccccC
Q 005106 663 ESIQMKRSFEAFFLKAYALADSSQDSSCSS-TVVSLLEDALKCPSDRLRKG 712 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 712 (714)
+.+++.|++ .|.+++.++....+|+.... .+.+.|+...+ =|-+|||
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 999999988 79999999887777765332 45555555543 3677776
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.7e-20 Score=194.13 Aligned_cols=247 Identities=9% Similarity=-0.036 Sum_probs=152.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-------ccch-------HHHHHHHHHHHh-ccch--hhHhhHHHHHHH
Q 005106 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLL-------RKEY-------DEAEHLFEAAVN-AGHI--YSIAGLARLGYI 427 (714)
Q Consensus 365 ~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~-------~g~y-------~eA~~~f~~AL~-~~~~--~a~~~lg~~~~~ 427 (714)
+...+++++...+.. ..+++++|..+.. .|++ ++|+..|++||+ ++|. .+|..+|.++..
T Consensus 35 a~~~~~~al~~~p~~---~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 335666666544332 5667777777653 3554 677777777776 4433 345556666655
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~-ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
+|+++ +|...|++|++++|+++. +|.++|.++.++|++++|+..|++|+
T Consensus 112 ~~~~~------------------------------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 112 RMKYE------------------------------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp TTCHH------------------------------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCHH------------------------------HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55554 455555666666666665 67777777777777777777777777
Q ss_pred hcCCC-HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 507 GFKLA-LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 507 ~l~P~-~~~~~~R~~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
+++|. ...+...+.+. ..+|++++|+..|+++++++|++.. +....+.+....++.++
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~-------------- 221 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------YVLAYIDYLSHLNEDNN-------------- 221 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCHHH--------------
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHCCCHHH--------------
Confidence 76664 44444333332 2357777777777777777776522 12222222222222222
Q ss_pred cccchHHHHHHHHHh---CC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 585 DDIGSLSVIYQMLES---DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 585 ~d~~al~~~~qaL~l---~P-~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
|...|+++++. +| .+..+|.+.+..+.+.|+.++|...+++|+++.|++.+-... +.+ ..
T Consensus 222 ----A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-----------~~ 285 (308)
T 2ond_A 222 ----TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-----------VD 285 (308)
T ss_dssp ----HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-----------HT
T ss_pred ----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-----------HH
Confidence 36667777774 44 367788888999999999999999999999999987754421 222 11
Q ss_pred HHHHHhcCCCHH-HHHHHHHH
Q 005106 661 AEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 661 ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
--+.+.++|+.. +.+.-||+
T Consensus 286 r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 286 RYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp TTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHhcccCCCCHHHHHhcCCC
Confidence 126777888887 66667765
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=8.6e-21 Score=224.04 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++++|.++.++|++++|+..|++||+++ +..++.++|.++..+|++++|++.|++||+++|+++.+|.++|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999995 56678999999999999999999999999999999999999986
Q ss_pred --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
.+++++|++.|++|++++|+++.+|+++|.+|.++|++++|+..|++||+++|+ +.++.++|.++..+|++++|++.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 367799999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 005106 535 VQAILTLSPDY 545 (714)
Q Consensus 535 ~~~al~L~P~~ 545 (714)
|++++++.|+.
T Consensus 168 ~~kal~l~~~~ 178 (723)
T 4gyw_A 168 MKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhChhH
Confidence 99999998875
No 69
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=178.47 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=91.7
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ .+..|.|+.+++++++|+.+++|+|||++. ++.++
T Consensus 16 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~ 90 (116)
T 2vpk_A 16 QREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWN 90 (116)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHH
Confidence 3457889999999999999999999999999999999987 356788873349999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|+++|.
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 91 VKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999985
No 70
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.85 E-value=1.9e-21 Score=178.95 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=93.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|+++ ++++++|+.+++|+|||+++ ++.++
T Consensus 22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~ 93 (121)
T 1buo_A 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAED 93 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHH
Confidence 4567889999999999999999999999999999999875 4689998 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
+.+++.+|++|+++.|++.|+++|.+.+
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998653
No 71
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=2.8e-19 Score=179.63 Aligned_cols=209 Identities=13% Similarity=-0.022 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
...+++.+|..+...|++++|+..|+++++.++ ..++..+|.++...|++++|++.+++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------- 96 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK------------------- 96 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------
Confidence 367788899999999999999999999988753 44566777777777777666665554
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+++++|++..+|.++|.++..+|++++|+..|+++++ .+|. +..+..+|.++..+|++++|+..|+
T Consensus 97 -----------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 97 -----------ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp -----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------HHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555666666666666666666666666666 4554 4555556666666666666666666
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++. .+...++.+....+++++| +..++++++.+|.++.++..++.++..
T Consensus 166 ~~~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 166 KSLRLNRNQP------SVALEMADLLYKEREYVPA------------------RQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHCSCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 6666666652 2223333333333444444 555666666667677778889999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+|++++|.+.+++++++.|++.++...+
T Consensus 222 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999876543
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=4.6e-19 Score=173.27 Aligned_cols=206 Identities=12% Similarity=-0.067 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++.+|.++...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++...|+.+.++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 467788999999999999999999999999854 5578889999999999999999999999999999999988874
Q ss_pred --c-CChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 458 --Y-CEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 458 --~-~~~~eAl~d~~kAi~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
. ++.++|+..|+++++ .+|+...+|.++|.++..+|++++|+..|+++++.+|+ +..+..++.++..+|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 4 677999999999999 77888999999999999999999999999999999996 88889999999999999999
Q ss_pred HHHHHHHHhhCC-CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 005106 532 LCDVQAILTLSP-DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (714)
Q Consensus 532 l~d~~~al~L~P-~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~ 610 (714)
+..|+++++++| ++. ..+...
T Consensus 167 ~~~~~~~~~~~~~~~~----------------------------------------------------------~~~~~~ 188 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQA----------------------------------------------------------DDLLLG 188 (225)
T ss_dssp HHHHHHHHHHHCSCCH----------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHhCCCCCH----------------------------------------------------------HHHHHH
Confidence 999999988888 652 223445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.++...|+.++|...++.+++.+|++.++...+.
T Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 189 WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 66777888899888888888889999888776553
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=7.7e-20 Score=182.35 Aligned_cols=202 Identities=9% Similarity=-0.067 Sum_probs=140.5
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
++..+|.+++..|++++|+..|++++++.| +...+++++|. .+++++|+..|++|++++|+++.+|.++|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 44444444432 1344666777788888888888999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhhHHHHHHHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-L-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGRVAASQLHMLV 561 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~--~~~~~~~~~a~~~~~~l 561 (714)
+|++++|+..|+++++++|+ + ..+..+|.++..+|++++|+..|+++++++|+ +..++ ..++.+
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------~~l~~~ 162 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL------YSLGVL 162 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH------HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH------HHHHHH
Confidence 99999999999999999995 6 45777888999999999999999999999998 64322 222211
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
... .. ...++++..+.+.+...+ .+......+.+++|+..+++|++++|++.++.
T Consensus 163 ~~~-----~~------------------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 163 FYN-----NG------------------ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHH-----HH------------------HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHH-----HH------------------HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 110 01 123566666766664443 55566778889999999999999999999999
Q ss_pred HHHHHHHH
Q 005106 642 VYEGWILY 649 (714)
Q Consensus 642 ~~~G~~ly 649 (714)
..++.+..
T Consensus 218 ~~l~~i~~ 225 (228)
T 4i17_A 218 QMQDQVKA 225 (228)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98888754
No 74
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.84 E-value=8.4e-22 Score=184.98 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=90.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++ +.+|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~--~~~~~~f~~lL~fiYtg~~~-i~~~~ 91 (135)
T 2yy9_A 19 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGN 91 (135)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC--CCCHHHHHHHHHHHhCCCCC-CCHHH
Confidence 45788999999999999999999999999999999999987 5679998 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+.+|+.+|++|+++.|++.|++||.+.+.
T Consensus 92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 92 RDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987764
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.2e-20 Score=221.65 Aligned_cols=198 Identities=10% Similarity=-0.059 Sum_probs=160.3
Q ss_pred hcCCCcHHHHHHHH-hcCChhHHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 005106 443 SSVTPLGWMYQERS-LYCEGDKRWEDLDKAT--------ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (714)
Q Consensus 443 ~~~p~~~~ay~~rg-~~~~~~eAl~d~~kAi--------~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~ 512 (714)
..+|+++.+++..+ ..+++++|++.|++|+ +++|+++.+|.++|.++.++|++++|+..|+++++++|+ +
T Consensus 388 ~~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp CCCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred cCCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 35677777777665 2466699999999999 999999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
.+++++|.++..+|++++|+.+|++|++++|++.. +...++.+....++++ + +..
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~~~~~g~~~------------------~-~~~ 522 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------PKLALAATAELAGNTD------------------E-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHHTCCC------------------T-TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcCChH------------------H-HHH
Confidence 99999999999999999999999999999999844 2233332222222222 2 447
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESI 665 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai 665 (714)
|+++|+++|+++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.+++..|+.+++ ...+++|+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887774444 44444444
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=2.5e-20 Score=195.21 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
+.+|.++|.+|..+|++++|+..|++||++.|. ..++.++|.+|..+ |++++|+..|++|+++.|+......
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 456666666666666666666666666666542 23445566666664 6666666666666666664311111
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh-------HHHHHHHHHHHcCChHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-------LYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~-------~~~~~g~~L~~lg~~eeA 623 (714)
...+...++.+....+++++| +..++++++++|.+.. +++++|.++..+|++++|
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 122333333334444444444 5666666666666544 678999999999999999
Q ss_pred HHHHHHHHHhCCCChhHH-----HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 624 MRSLQLARQHAASDHERL-----VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~-----~~~G~~ly--~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
+..|+++++++|+...+. ..++..+- +.+++++|+..|++++.++|.+.-..+|.
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 999999999999987753 33444443 56889999999999999999987666554
No 77
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.83 E-value=3.4e-22 Score=184.74 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=90.5
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~-~v~~~~f~~lL~~iYtg~~~-i~~~~ 98 (124)
T 2ihc_A 23 QRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPE-EVTVKGFEPLIQFAYTAKLI-LSKEN 98 (124)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCT-TSCHHHHHHHHHHHHHSEEE-EETTT
T ss_pred HHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecC-CcCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 44678899999999999999999999999999999999999775 5788853 69999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|++||.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=4e-20 Score=190.41 Aligned_cols=266 Identities=14% Similarity=-0.031 Sum_probs=215.7
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPY 482 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~----~~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~ay 482 (714)
.+...|..+...|++++|+..|+++++..|+. +.+|..+|. .+++++|+..|++|+++ .|..+.+|
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 45667999999999999999999999999886 466666664 35669999999999998 77788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED--------------------YQAALCDV 535 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd--------------------~e~Al~d~ 535 (714)
.++|.++..+|++++|+..+++++++.|. ...+..+|.++..+|+ +++|+..|
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998552 2366778999999999 99999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHH
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFR 609 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~------~~~~ 609 (714)
++++++.+..........+....+.+....+++++| +..+++++++.|.... ++++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA------------------VIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999987543322222333455555555555555555 7788889888776655 9999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFL 676 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~-------~a~~~ 676 (714)
+|.++..+|++++|+..+++++++.|+. +.++.++|.++..+|++++|+..+++|+++.|.. .+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999998887 8899999999999999999999999999986654 27778
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 677 KAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
.|.++...+ --...+..+++|++.
T Consensus 309 la~~~~~~g----~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALG----NHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC----ChHHHHHHHHHHHHH
Confidence 887776654 234556666666653
No 79
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.83 E-value=5.5e-22 Score=183.35 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=93.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+++ ++++++|+.+|+|+|||++. ++.++
T Consensus 26 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~ 101 (125)
T 3ohu_A 26 QRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSREN 101 (125)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTT
T ss_pred HHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHH
Confidence 4568899999999999999999999999999999999999977 67889984 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKL 278 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L 278 (714)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999998764
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=5.6e-20 Score=215.79 Aligned_cols=183 Identities=11% Similarity=-0.033 Sum_probs=169.4
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL--------GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL--------~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
.++|+++.+++..| ...|++++|+..|++++ +.+|+ .+.+..+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 67999999999888 88999999999999999 99996 78899999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
++. .+...++.+....+++++| +..|+++|+++|+++.+|+++|.++.++|++++
T Consensus 465 ~~~------~a~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRW------RLVWYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 993 4566666666777777777 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
+..|++|++++|+++++++++|.++..+|++++|++.|++|++++|++. |++++|.++..
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988 99999999844
No 81
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.82 E-value=4.3e-21 Score=176.07 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=89.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ +..|.++ ++++++|+.+|+|+|||++. ++.++
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~ 92 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPEN 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 3467889999999999999999999999999999999963 4578887 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|++||.
T Consensus 93 ~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999984
No 82
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.4e-21 Score=180.22 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=87.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|.|++ ++++++|+.+++|+|||++. ++.++
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~ 100 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGD 100 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHH
Confidence 4467889999999999999999999999999999999987 567899963 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
+.+++.+|++|+++.|++.|++||.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=186.76 Aligned_cols=247 Identities=13% Similarity=0.005 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------c--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISS------ 444 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------ 444 (714)
....++..+|.++...|++++|+..|++++++ . ...++..+|.++...|++++|+..+.+++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35677889999999999999999999999985 2 2446778999999999999999999999987
Q ss_pred --CCCcHHHHHHHHh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 005106 445 --VTPLGWMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGF-- 508 (714)
Q Consensus 445 --~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~Ld--------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-- 508 (714)
.|..+.++.++|. .+++++|+..|++++++. |....++.++|.++..+|++++|+..|++++++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556777777764 356699999999999984 778899999999999999999999999999998
Q ss_pred ------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 ------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
+|. ...+..+|.++..+|++++|+..|++++++.|+..... . .. .....+..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~--~~------~~~~~~~~----------- 243 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS--V--DD------ENKPIWMH----------- 243 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----------------CCHHHH-----------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C--Cc------chHHHHHH-----------
Confidence 554 56678899999999999999999999999866531000 0 00 00000000
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
...+...+......+.+.+|+..++++....|..+.++.++|.++..+|++++|+..|
T Consensus 244 ----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 244 ----------------------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ----------------------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112223333444566666777777777777777777777777777777777777777
Q ss_pred HHHHhcCCC
Q 005106 662 EESIQMKRS 670 (714)
Q Consensus 662 e~Ai~i~~~ 670 (714)
++|+++.|.
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 777777664
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=1.8e-18 Score=185.11 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG------ 449 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~------ 449 (714)
......+|.++...|++++|+..+++|++..+. .++..+|.++..+|++++|...+.+++++.+..+
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 455678899999999999999999999987322 1466789999999999999999999998755322
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 005106 450 WMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (714)
Q Consensus 450 ~ay~~rg~----~~~~~eAl~d~~kAi~Ld--------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------ 511 (714)
.++.++|. .+++++|+..|++++++. |....++.++|.++..+|++++|+..+++++++.|.
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 22333332 245599999999999986 456678999999999999999999999999998774
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
...+.+++.++...|++++|+..+++++++.+.... .............+.....++++| .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------------------~ 235 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA------------------A 235 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH------------------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH------------------H
Confidence 245677899999999999999999999998544211 000011111111222334444444 6
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 005106 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
..++++++..|... ..+.++|.++..+|++++|...++++++..+.. .+++..+|.++..+|++++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67777777777642 356789999999999999999999999987643 36889999999999999999999
Q ss_pred HHHHHhcCCCH
Q 005106 661 AEESIQMKRSF 671 (714)
Q Consensus 661 ye~Ai~i~~~~ 671 (714)
+++|+.+.+..
T Consensus 316 l~~al~~~~~~ 326 (373)
T 1hz4_A 316 LLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99999986643
No 85
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=1.1e-18 Score=185.83 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=195.3
Q ss_pred ccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHhc-----------CC
Q 005106 396 RKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY-----------CE 460 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G--~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-----------~~ 460 (714)
....++|+..++++|.++| ..++.++|.+...+| +++++++.++++|..+|++.++|+.|+.. +.
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3445799999999999965 457889999999999 99999999999999999999999998642 45
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC------HHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE--AALAEINRILGFKL-ALECLELRFCFFLALED------YQAA 531 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~--eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd------~e~A 531 (714)
.++++..++++++.+|.+..+|.+|+.++..+|+++ ++++.++++|+.+| +..+|+.|+.++..+|+ ++++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 689999999999999999999999999999999999 99999999999999 58999999999999998 9999
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhC---CCChhHH
Q 005106 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---APKGVLY 607 (714)
Q Consensus 532 l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~---P~~~~~~ 607 (714)
+..+++++.++|++. .+.+.++.+....+. .+.+ ...+++.++++ |.++.++
T Consensus 206 l~~~~~aI~~~p~n~------SaW~y~~~ll~~~~~~~~~~------------------~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 206 LNYVKDKIVKCPQNP------STWNYLLGIHERFDRSITQL------------------EEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHCSSCH------HHHHHHHHHHHHTTCCGGGG------------------HHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhCCCCc------cHHHHHHHHHHhcCCChHHH------------------HHHHHHHHhccCCCCCCHHHH
Confidence 999999999999993 333333322222222 2212 33566666666 9999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH-hCCCChhHHHHHHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWIL 648 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~-l~P~~~ea~~~~G~~l 648 (714)
..++.++.++|+.++|++.|+++.+ ++|-....+.++|..+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 9999999999999999999999997 8999999998888654
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=1e-18 Score=194.96 Aligned_cols=282 Identities=14% Similarity=0.044 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhccch---HHHHHHHHHHHhccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcCCC-----cHH
Q 005106 384 LAFHQLGCVRLLRKEY---DEAEHLFEAAVNAGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSVTP-----LGW 450 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y---~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~p~-----~~~ 450 (714)
.+++++|.++...|++ ++|+.+|++|++. ++.+++.+|.+++..| ++++|+.+|.++++..+. +|.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~ 114 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAM 114 (452)
T ss_dssp TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445556555555555 5666666666555 5555555665444444 555566666666554332 222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHhcC
Q 005106 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE----INRILGFKLALECLELRFCFFLALE 526 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~----~~kAL~l~P~~~~~~~R~~~~~~lg 526 (714)
+|...+......+++..+.++.+ +.++.+++++|.+|...+.+++++.. ++++..-+ +.+++++|.+|...|
T Consensus 115 ~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 115 LYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT--DICYVELATVYQKKQ 190 (452)
T ss_dssp HHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Confidence 23222222222334444444432 22345555555555555544433333 44444333 346677888888888
Q ss_pred ---CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh----hhhhHH------------HHHHhhhhc-c--ccc
Q 005106 527 ---DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI----DNWTIA------------DCWLQLYDR-W--SSV 584 (714)
Q Consensus 527 ---d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~----~~~~~A------------~~~~~l~~~-~--~~~ 584 (714)
++++|+..|+++.+.+|...... ..++.+.... +++++| .++..++.. + ...
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 88888888888888888774421 1111111110 111122 112222211 0 112
Q ss_pred cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCH
Q 005106 585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN-----CPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHC 654 (714)
Q Consensus 585 ~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-----~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~ 654 (714)
.|.. |+..|+++++ ++++.+++++|.++. .| ++++|+..|++|. |+++++++++|.++.. ..++
T Consensus 265 ~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 2222 4555555553 335555555555555 33 5555555555555 5555555555554444 2255
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 655 EEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 655 eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
++|+..|++|.+.. +..|.++.|+.+..
T Consensus 339 ~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 339 QKALDHLLTAARNG-QNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHHHTTT-CTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhC-hHHHHHHHHHHHHh
Confidence 55555555555532 22355555555554
No 87
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=2.5e-17 Score=168.63 Aligned_cols=208 Identities=11% Similarity=0.025 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALC 533 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~ 533 (714)
++|+..|++|++ |+++.++.++|.++.. .+++++|+..|+++++++ ++.+++++|.+|.. .|++++|+.
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 445555566666 7788899999999999 999999999999999886 68889999999999 999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
.|+++++++ + ..+...++.+... .+++++| +..++++++.+ ++.++++
T Consensus 100 ~~~~a~~~~--~------~~a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 100 YYSKACDLK--Y------AEGCASLGGIYHDGKVVTRDFKKA------------------VEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHTT--C------HHHHHHHHHHHHHCSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHcC--C------ccHHHHHHHHHHcCCCcccCHHHH------------------HHHHHHHHhcC--cHHHHHH
Confidence 999999985 3 2234444444433 4444444 88999999986 7889999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 005106 610 QSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (714)
Q Consensus 610 ~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (714)
+|.++.. .+++++|+..|++|++. +++++++++|+++.. .|++++|+..|++|+++.| ..++++.|.++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999 99999999999999988 468999999999999 9999999999999999987 67999999999
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 005106 682 ADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
....-....-..-+..++.|+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 8732222223344555666553
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=1.4e-17 Score=178.93 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKL-ALECLELRFCFFLALED-YQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r--~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd-~e~Al~d~~~ 537 (714)
++++..+++++..+|.++.+|++|+.++..+++ ++++++.++++|+++| ++.+|..|+++...+|+ +++++..+.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 788889999999999999999999999999985 8999999999999999 58899999999999998 6999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc--ccc-chHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV--DDI-GSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~--~d~-~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
+++.+|.|.- +.+.++.+.........+. ..... +.+ +++..++++|..+|++..+|+.+.-++
T Consensus 171 ~I~~~p~N~S------AW~~R~~ll~~l~~~~~~~-------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 171 LITRNFSNYS------SWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHCSCCHH------HHHHHHHHHHHHSCCC-------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHH------HHHHHHHHHHHhhhccccc-------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999998832 3333333322221000000 00000 011 148899999999999999997555555
Q ss_pred HHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 615 LRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 615 ~~l-----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly---~~G~~eeAl~~ye~Ai~i~~~~~a~~~ 676 (714)
.+. +..++++..++++++++|++...+.....+.- ..|..++....+.+.++++|-=.-++.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 444 45789999999999999999655444433322 368999999999999999998775553
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=1.1e-18 Score=173.39 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 005106 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL----------------RFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~----------------R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+..+..+|..++..|++++|+..|+++++++|+ +..++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777664 556666 67777777777777777777777
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC- 619 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~- 619 (714)
++|++. .+...++.+....+++++| +..|+++|+++|+++.+|+++|.++..+|.
T Consensus 83 ~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 83 KAPNNV------DCLEACAEMQVCRGQEKDA------------------LRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HCTTCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 777763 2344444444445555555 666777777777778888999998877764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 620 -PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 620 -~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
.++|...+++++...|. ..+++++|.+++.+|++++|+..|++|++++|+.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 45677888888754443 4588999999999999999999999999999998743
No 90
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.3e-18 Score=187.66 Aligned_cols=230 Identities=10% Similarity=-0.048 Sum_probs=138.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc----c----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA----G----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-------GWM 451 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~----~----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-------~~a 451 (714)
+.+|..+...|++++|+..|++|+++ + ...++.++|.++..+|+++.|+..+.+|+++.+.. +.+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 44666666667777777777766664 1 23345566666666666666666666666653321 223
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CC-HHH
Q 005106 452 YQERSL----YCEGDKRWEDLDKATALDPTLS------YPYMYRASSLMTKQNVEAALAEINRILGF-----K-LA-LEC 514 (714)
Q Consensus 452 y~~rg~----~~~~~eAl~d~~kAi~LdP~~~------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~-P~-~~~ 514 (714)
+.+.|. .+++++|+..|++|+++.|... .+|.++|.++..+|++++|+..|++|+++ + |. +.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 333322 1233555555555554443332 34555555555555555555555555542 2 32 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+.++|.++..+|++++|+..|++++++.+...
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------------ 298 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG------------------------------------------------ 298 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------------------------------------------
Confidence 44455555555555555555555554433210
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|.....+..+|.++...|+ .++|+..++++ ...|...+++.++|.++..+|++++|+..|++|+++..+
T Consensus 299 -----~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 -----DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -----CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -----CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 22222335568888888888 88899988887 667777889999999999999999999999999987654
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=186.27 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=166.6
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHh----cCChhHHHHHHHHHHhc--------
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL-------- 474 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~L-------- 474 (714)
..++..+|.++...|++++|+..+.+++++ .|..+.++..+|. .+++++|+..|++|+++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999995 5666777777764 35669999999999998
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLALEDYQAALCDVQAILTL---- 541 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L---- 541 (714)
+|....+|.++|.++..+|++++|+..|++++++. |. ...+.++|.++..+|++++|+..|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999984 33 456778999999999999999999999998
Q ss_pred ----CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---------ChhHHH
Q 005106 542 ----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYF 608 (714)
Q Consensus 542 ----~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---------~~~~~~ 608 (714)
+|.. ..+...++.+....+++++| +..+++++++.|. ....+.
T Consensus 187 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 187 LGPDDPNV------AKTKNNLASCYLKQGKFKQA------------------ETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp SCTTCHHH------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHHHC------CCHHH
T ss_pred hCCCCHHH------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 4443 33455555555666666666 6778888876443 222222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
.. ..+...+..+...+.+++|+..+++++...|... +++..|.++....-
T Consensus 243 ~~----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 293 (311)
T 3nf1_A 243 HA----------------------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK- 293 (311)
T ss_dssp HH----------------------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-
T ss_pred HH----------------------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-
Confidence 22 2334444455567888888889999998888887 88888888876542
Q ss_pred CCchhhHHHHHHHhhc
Q 005106 688 SSCSSTVVSLLEDALK 703 (714)
Q Consensus 688 ~~~~~~~~~~~~~~~~ 703 (714)
-..-+..+++|++
T Consensus 294 ---~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 ---FEAAETLEEAAMR 306 (311)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 3445666666664
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=4.1e-18 Score=173.89 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=156.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
...+++|+++..++++|..++..|++++|+..|+++++.+|+ +.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 6 GSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 356789999999999999999999999999999999999994 5778899999999999999999999999999976
Q ss_pred hhhhhhHHHHHHHHHHHHh--------hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----------
Q 005106 546 RMFEGRVAASQLHMLVREH--------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---------- 607 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~---------- 607 (714)
... ..+...++.+... .+++++| +..++++++.+|+++.++
T Consensus 86 ~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 PRV---PQAEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTH---HHHHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred chh---HHHHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 321 2344445544444 5555555 889999999999998888
Q ss_pred -------HHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 005106 608 -------FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDT----------SHCEEGLRKAEESIQM 667 (714)
Q Consensus 608 -------~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~----------G~~eeAl~~ye~Ai~i 667 (714)
+++|.++.++|++++|+..|+++++..|+ ..++++++|.+++.+ |++++|+..|++++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 567999999999987 9999999999999999
Q ss_pred CCCHH
Q 005106 668 KRSFE 672 (714)
Q Consensus 668 ~~~~~ 672 (714)
.|+..
T Consensus 225 ~p~~~ 229 (261)
T 3qky_A 225 FPDSP 229 (261)
T ss_dssp CTTCT
T ss_pred CCCCh
Confidence 99874
No 93
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=3.7e-20 Score=170.24 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=85.6
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
...++.+|||+|+|||++|+|||.|||++|+||++ ....|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~ 91 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGE 91 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGG
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence 34678999999999999999999999999999985 34678888 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|++++..
T Consensus 92 v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 92 LRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999999998764
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=1.1e-19 Score=209.12 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~ 528 (714)
++|++.+++||+++|+++.+|++||.++..+|+ +++|++.++++|+.+|. +.+|+.|++++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 788999999999999999999999999999999 99999999999999995 899999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
++|+..+++++++||++.. |...++-+..... .+++ ++..++++|+.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l~~~~~~------------------el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTCCCHHH------------------HHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhcccccc------HHHHHHHHHHHcCCChHH------------------HHHHHHHHHHHCCCCccHH
Confidence 9999999999999999843 3333333322223 3333 3889999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHH------------HHHHH
Q 005106 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE------------GLRKA 661 (714)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ee------------Al~~y 661 (714)
+++|.++.++ +.+++|++.+++|+.++|++..+++|+||++...|++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999997 567999999999999999999999999999999999888 77778
Q ss_pred HHHHhcCCCH
Q 005106 662 EESIQMKRSF 671 (714)
Q Consensus 662 e~Ai~i~~~~ 671 (714)
.+|+.++|+.
T Consensus 262 ~~~i~~~~~~ 271 (567)
T 1dce_A 262 SRPLTVGSRM 271 (567)
T ss_dssp EEEECTTBTT
T ss_pred ccceeccccc
Confidence 9999999874
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=1.6e-19 Score=170.73 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=97.5
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
+|.++..+|.+ ++|++.|.+|+..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +.+|.++|.++..+|
T Consensus 3 LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45555666655 77777777777777777777777777777777777777777777777774 677777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++++|++ +++
T Consensus 80 ~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~~ 101 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ----------------------------------------------------------KDL 101 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------------------------HHH
T ss_pred chHHHHHHHHHHHHhCCCC----------------------------------------------------------HHH
Confidence 7777777666666666654 344
Q ss_pred HHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRS-LQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~-~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
|+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 56666666666666555544 366777777777776666766666664
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.1e-18 Score=173.51 Aligned_cols=163 Identities=9% Similarity=-0.071 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhh----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAG----------------LARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~----------------lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
...+...|..++..|++++|+..|++|++++| ..++++ +|.++..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999965 446778 999999999999999999999999
Q ss_pred CCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 445 VTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKLALECLELR 518 (714)
Q Consensus 445 ~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r--~~eAl~~~~kAL~l~P~~~~~~~R 518 (714)
+|+++.+|.++|.. +++++|+..|++|++++|+++.+|+++|.+|...|+ ..+|+..|++++..+|....++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999998863 677999999999999999999999999999987754 567788999988544434567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
|.++..+|++++|+.+|++|++++|+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999986
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=2.2e-18 Score=180.42 Aligned_cols=207 Identities=10% Similarity=-0.006 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCc-HH-HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 005106 434 AYEKLNSVISSVTPL-GW-MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL- 510 (714)
Q Consensus 434 A~~~~~~aI~~~p~~-~~-ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P- 510 (714)
|.+.+.+|-+.-+.. |. .|+..+.-.++++|+..|++| |.+|..+|++++|+..|++|+++.+
T Consensus 4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~ 69 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKK 69 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445555555555542 22 233210001238888888887 6789999999999999999999843
Q ss_pred -----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHhhhhcccc
Q 005106 511 -----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSS 583 (714)
Q Consensus 511 -----~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~ 583 (714)
. ..++.++|.+|..+|++++|+..|++|+++.|+.....+...+...++.+.... .++++|
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------ 137 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------ 137 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------
Confidence 1 456788999999999999999999999999887533222233444455444443 555555
Q ss_pred ccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHh
Q 005106 584 VDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-------RLVYEGWILYD 650 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-------a~~~~G~~ly~ 650 (714)
+..|++||++.|.. +.++.++|.++.++|++++|+..|++|+++.|++.. ++.++|.++..
T Consensus 138 ------~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 138 ------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 88999999999976 578999999999999999999999999999999875 57899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+|++++|+..|++++.++|+|.
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TTCHHHHHHHHHGGGCC-----
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999986
No 98
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=5.7e-17 Score=183.23 Aligned_cols=314 Identities=11% Similarity=0.027 Sum_probs=198.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-hhhHhhHHH-HHHHhCCHHHHHH--
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-IYSIAGLAR-LGYIKGHKLWAYE-- 436 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~~a~~~lg~-~~~~~G~~~~A~~-- 436 (714)
+.+.+..++++++...|.. ...+...|......|++++|+..|++|++..| ...|...+. +....|+.+.|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSS---GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 3445556666665543322 34555667777777788888888888777743 334444443 3345566666544
Q ss_pred --HHHHHHhc---CCCcHHHHHHHHhc-------------CChhHHHHHHHHHHhcCCCCh--HHHHHHHH---------
Q 005106 437 --KLNSVISS---VTPLGWMYQERSLY-------------CEGDKRWEDLDKATALDPTLS--YPYMYRAS--------- 487 (714)
Q Consensus 437 --~~~~aI~~---~p~~~~ay~~rg~~-------------~~~~eAl~d~~kAi~LdP~~~--~ay~~rg~--------- 487 (714)
.|++++.. +|+.+..|...+.+ ++.++|...|++|++ .|... ..|...+.
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence 66666553 45555555432211 223777778888887 56543 11111000
Q ss_pred ------------------------------------------------------HHHh------cCC----HHHHHHHHH
Q 005106 488 ------------------------------------------------------SLMT------KQN----VEAALAEIN 503 (714)
Q Consensus 488 ------------------------------------------------------~l~~------l~r----~~eAl~~~~ 503 (714)
+..+ +++ .+.|+..|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 0000 011 125566777
Q ss_pred HHHhcCCC-HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 504 RILGFKLA-LECLELRFCFFLA-------LEDYQ-------AALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 504 kAL~l~P~-~~~~~~R~~~~~~-------lgd~e-------~Al~d~~~al~-L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
+||..+|+ ++.|...+.++.. +|+++ +|+..|++|++ ++|++.. +....+.+....++
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------LYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------HHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHhcCC
Confidence 77777774 6666666666554 67765 77777777776 6776632 22223333333333
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
+++ |..+|+++|+++|.++ .+|.+.|.++.++|+.++|...|++|++..|.+...+...|+
T Consensus 337 ~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 337 YEK------------------VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHH------------------HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHH------------------HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 333 4778999999999885 689999999999999999999999999998888888877777
Q ss_pred HHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc-CCC
Q 005106 647 ILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPS 706 (714)
Q Consensus 647 ~ly-~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 706 (714)
+.+ .+|++++|...|++|+++.|+.. .|...|..+... ..-..+..++|.|+. ||.
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~----g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----NEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC----CCHhhHHHHHHHHHhccCC
Confidence 744 58999999999999999999766 666666555432 234567888888886 453
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=2.4e-19 Score=169.57 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=126.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 005106 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~ 562 (714)
++|.++...|++++|++.+.+++..+|+ +..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----------------- 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----------------- 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 5789999999999999999999999886 6777889999999999999999888888887776
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
+.+|+++|.++.++|++++|+..|++|++++|+++++++
T Consensus 65 -----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 65 -----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 457889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 643 YEGWILYDTSHCEEGLRKA-EESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~y-e~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
++|.+++.+|++++|...| ++|++++|++. +|.+|+..+.-.+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988775 99999999988 9999998876443
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=8.1e-19 Score=161.45 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=109.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 469 ~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.++..+||+.+.+|.++|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 80 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence 3566799999999999999999999999999999999999996 8889999999999999999999888888888776
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
+.+|+++|.++..+|++++|+..|
T Consensus 81 --------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 81 --------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356888999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHH
Q 005106 628 QLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~l 648 (714)
++|++++|++.+++.++|.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999998775
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=2.4e-18 Score=175.59 Aligned_cols=69 Identities=4% Similarity=-0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCC---ChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAP---KGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSH 653 (714)
Q Consensus 590 l~~~~qaL~l~P~---~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~ 653 (714)
+..++++++..|. .+.+++++|.++..+ |++++|+..|+++++..|++. ++...++.++..+|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 345777888888876 899999999999999999995 566666777766666
Q ss_pred HHHHH
Q 005106 654 CEEGL 658 (714)
Q Consensus 654 ~eeAl 658 (714)
++++.
T Consensus 248 ~~~~~ 252 (261)
T 3qky_A 248 LEGDA 252 (261)
T ss_dssp HHTCT
T ss_pred hhhhh
Confidence 65543
No 102
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=7.4e-16 Score=174.09 Aligned_cols=186 Identities=9% Similarity=-0.035 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-cCCC-HHHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT-------KQNVE-------AALAEINRILG-FKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~-------l~r~~-------eAl~~~~kAL~-l~P~-~~~~~~R~~~~~~l 525 (714)
+.++..|++|+..+|+++..|+++|..+.. +|+++ +|+..|++|++ ++|+ ...|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 377889999999999999999999999986 79987 99999999997 8996 88888999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|++++|...|+++++++|++.. .+....+.+....+++++| ...|++|++..|....
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~A------------------~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKSG------------------RMIFKKAREDARTRHH 391 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHTCTTCCTH
T ss_pred CCHHHHHHHHHHHhCccccCch-----HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhccCCchH
Confidence 9999999999999999998731 1233333333334445555 7789999999999888
Q ss_pred HHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 606 LYFRQSLL-LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 606 ~~~~~g~~-L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+...+.+ +..+|++++|...|++|++..|++++++.+.|..+..+|++++|...|++|+...|.
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 88777665 346999999999999999999999999999999999999999999999999998653
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=7.5e-18 Score=158.90 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
...|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|++++|+..++++++++|++.. +...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------VATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHH
Confidence 456677777777777777777777777777774 666666777777777777777777777777777632 2333
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
.+.+....+++++| +..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|++
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 33333344444444 666777777788888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.++.++|.+++.+|++++|+..+++++++.|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988764
No 104
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=7.9e-18 Score=181.50 Aligned_cols=232 Identities=9% Similarity=-0.010 Sum_probs=177.4
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--c-------ch
Q 005106 348 YCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--G-------HI 415 (714)
Q Consensus 348 ~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~-------~~ 415 (714)
+++...+..... +.+.....++.+.... ++....+.+++++|.++...|++++|+.+|++|+++ . ..
T Consensus 106 ~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 334555554433 5677778888876653 334456788999999999999999999999999987 1 12
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHh----cCChhHHHHHHHHHHh-----cC-CCCh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSL----YCEGDKRWEDLDKATA-----LD-PTLS 479 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~----~~~~~eAl~d~~kAi~-----Ld-P~~~ 479 (714)
.++.++|.++..+|++++|+..+++++++.+. .+.+|.++|. .+++++|+..|++|++ .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 36788999999999999999999999987442 2346666654 2566999999999999 57 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-----AL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
.++.++|.++..+|++++|+..|++|+++.+ .. ..+...+.++...|++ ..+++++.+
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~------------ 328 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDF------------ 328 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHH------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHH------------
Confidence 9999999999999999999999999999843 22 2235577888888887 223333221
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
++++ ...|....++.++|.++..+|++++|+..+++|+++
T Consensus 329 ---------------------------------------~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 329 ---------------------------------------LESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ---------------------------------------HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111 222334567888999999999999999999999998
Q ss_pred CCC
Q 005106 634 AAS 636 (714)
Q Consensus 634 ~P~ 636 (714)
...
T Consensus 369 ~~~ 371 (383)
T 3ulq_A 369 RQL 371 (383)
T ss_dssp HTS
T ss_pred HHH
Confidence 765
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=1.7e-18 Score=167.05 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=141.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
+|.....+..+|.++...|++++|+..|+++++++|+ +.++..+|.++..+|++++|+..|+++++++| +..+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 5666778999999999999999999999999999996 88899999999999999999999999999999 64322
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.+... ++ . +..+++..++++++++|+++.+++++|.++..+|++++|+..|++++++
T Consensus 77 --~~~~~~~~~-~~---~-------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 77 --SLIAKLELH-QQ---A-------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp --HHHHHHHHH-HH---H-------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHH-hh---c-------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 111111000 00 0 1223578999999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 634 ~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|+. +.++.++|.++..+|+.++|+..|+++++
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9986 55999999999999999999999999986
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=1.5e-17 Score=185.66 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=191.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHH---HH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-----EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL---WA 434 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g-----~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~---~A 434 (714)
.....+++++.+. ...+.+++|.++...+ ++++|+.+|++|++.++..++..+|.+|...++.. .+
T Consensus 55 ~~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 55 KQAEATYRAAADT------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCH
T ss_pred HHHHHHHHHHHhC------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence 3444555553322 4577899999776665 89999999999999999999999999999877644 34
Q ss_pred HHHHHHHHhcCC-----CcHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 005106 435 YEKLNSVISSVT-----PLGWMYQERSLYC-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRI 505 (714)
Q Consensus 435 ~~~~~~aI~~~p-----~~~~ay~~rg~~~-~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kA 505 (714)
+.++.++..... ++|..|...+.+. ..+++...+..|...+|+ +++++|.+|...| ++++|+..|+++
T Consensus 129 ~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 666665554322 1233333332221 113333344455444444 6666666666666 666666666666
Q ss_pred HhcCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH--------
Q 005106 506 LGFKLA-LECLELRFCFFLAL----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD-------- 572 (714)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~l----gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~-------- 572 (714)
++..|. ...+++.|.+|... +|+++|+..|+++. |++..+....+.....+ ...+++++|.
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~---~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF---PELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS---GGGCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Confidence 666553 44445555555444 56666666666655 55432211111110000 0112222221
Q ss_pred -----HHHhhhhcccc----ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCh
Q 005106 573 -----CWLQLYDRWSS----VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 573 -----~~~~l~~~~~~----~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
++..++..+.. -.|.. |+..|++|. |+++.+++++|.++.. ..++++|+..|++|.+ +.++
T Consensus 280 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~ 354 (452)
T 3e4b_A 280 ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN 354 (452)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH
Confidence 12222222111 11333 788999999 9999999999998887 3499999999999987 5689
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 639 ERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 639 ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++++++|.++.. ..++++|+..|++|.+..+....+.+..+ ...++|+.-.....++++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l---~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQL---EAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHH
Confidence 999999999885 46999999999999998876666555544 456777766667777766543
No 107
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.77 E-value=2.4e-17 Score=177.82 Aligned_cols=236 Identities=11% Similarity=-0.030 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP----- 447 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~----- 447 (714)
.....++.+|..+...|+|++|+..|++|+++- .+.++.++|.++..+|+++.|+..+.+|+++.+.
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 344566789999999999999999999999871 2456788999999999999999999999987442
Q ss_pred --cHHHHHHHHh----cCChhHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC
Q 005106 448 --LGWMYQERSL----YCEGDKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILG-----FKL 510 (714)
Q Consensus 448 --~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-----l~P 510 (714)
.+.++.+.|. .+++++|+..|++|+++.+. .+.++.++|.++..+|++++|+..|++|++ -+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2334444443 24447777777777776332 245677777777777777777777777777 555
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 511 A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 511 ~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
. +.++.++|.++..+|++++|+..|++++++.+...
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------- 295 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS------------------------------------------- 295 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC-------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------
Confidence 4 45566677777777777777777777777765431
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|.....+..++.++...|. .++|+..+++ ....|+..+.+..+|.+++.+|++++|+..|++|++
T Consensus 296 ----------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 ----------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ----------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111122334445555566 6677777766 344556677888999999999999999999999998
Q ss_pred cCCC
Q 005106 667 MKRS 670 (714)
Q Consensus 667 i~~~ 670 (714)
+...
T Consensus 365 ~~~~ 368 (378)
T 3q15_A 365 AQED 368 (378)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 108
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.77 E-value=4.6e-19 Score=161.97 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=84.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||.++ ...|.++ ++++++|+.+++|+|||++..++.++
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 4467889999999999999999999999999999999976 5689998 59999999999999999993399999
Q ss_pred HHHHHHHHhhhChhhHHH
Q 005106 255 LLEILIFANKFCCERLKD 272 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~ 272 (714)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999874
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.1e-17 Score=175.08 Aligned_cols=168 Identities=15% Similarity=-0.002 Sum_probs=147.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
-|+...++..+|..+.+.|++++|+..|+++++++|+ ++++.++|.++..+|++++|+..|+++++++|++....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 4999999999999999999999999999999999996 88899999999999999999999999999999753211
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.......+.+. ++..++++++.+|+++++++++|.++..+|++++|+..|++++++
T Consensus 189 --~~~~~~l~~~~~~~~------------------a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 --LVAQIELLXQAADTP------------------EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp --HHHHHHHHHHHTSCH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcccCc------------------cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111111111112222 478899999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 634 ~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|++ +.++.++|.++..+|+.++|+..|+++++
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999 99999999999999999999999999986
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=2.5e-18 Score=173.42 Aligned_cols=203 Identities=10% Similarity=-0.030 Sum_probs=129.2
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHh----cCChhHHHHHHHHHHhc--------CC
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DP 476 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--------p~~~~ay~~rg~----~~~~~eAl~d~~kAi~L--------dP 476 (714)
++..+|.++..+|++++|+..+++++++. |..+.++.++|. .+++++|+..|++|+++ +|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34455555555555555555555555442 333444444442 13446666666666666 57
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
....+|.++|.++..+|++++|+..|++++++ .|. ...+.++|.++..+|++++|+..|++++++.|....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999998 554 567788999999999999999999999998554310
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH------cCChH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNCPE 621 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~~e 621 (714)
. ...|....++...+..... ...+.
T Consensus 205 ~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 205 G-------------------------------------------------SVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp S-------------------------------------------------SCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred C-------------------------------------------------CcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 0 0011111222222222222 12233
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++...++.+....|+.+.++.++|.++..+|++++|+..|++|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34444444444567777888888888888888888888888888764
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=2.3e-17 Score=188.23 Aligned_cols=161 Identities=12% Similarity=-0.018 Sum_probs=122.0
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999996 888899999999999999999988888
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++ +.+++++|.++.++|
T Consensus 84 l~~~p~~----------------------------------------------------------~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 84 SDAAPEH----------------------------------------------------------PGIALWLGHALEDAG 105 (568)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence 8888876 234567777778888
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++++|+..|++|++++|++.+++.++|.++..+ |++++|++.|+++++++|+.. +|++.+
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888888888888888888 888888888888888877765 665554
No 112
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=8.7e-17 Score=151.57 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~- 458 (714)
....++.+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|+.+.++..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35677889999999999999999999999884 455678899999999999999999999999999988888887653
Q ss_pred ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
++.++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999996 78889999999999999999999
Q ss_pred HHHHHhhCCCchh
Q 005106 535 VQAILTLSPDYRM 547 (714)
Q Consensus 535 ~~~al~L~P~~~~ 547 (714)
|+++++++|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999999999853
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=1.8e-16 Score=171.24 Aligned_cols=178 Identities=13% Similarity=0.056 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLAL-E-DYQAALCDVQ 536 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-g-d~e~Al~d~~ 536 (714)
.++|+..++++|.++|++..+|++||.++..+| .+++++..++++|..+|. +.+|+.|++++..+ | ++++++..++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 378999999999999999999999999999999 499999999999999995 89999999988888 8 9999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++.. +...++-+......++.+.. . .-.+++..++++|+.+|+|..+|++|+.++.+
T Consensus 150 k~L~~dpkNy~------AW~~R~wvl~~l~~~~~~~~--~--------~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 150 GSLLPDPKNYH------TWAYLHWLYSHFSTLGRISE--A--------QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHTSSCTTCHH------HHHHHHHHHHHHHHTTCCCH--H--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHH------HHHHHHHHHHHhccccccch--h--------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999998844 33333333333333331000 0 00124889999999999999999999999999
Q ss_pred cCC-------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 617 LNC-------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 617 lg~-------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
+++ .+++++.+++++.++|+|..+++|+.+++...|+-
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 998 78999999999999999999999999999998875
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=3.1e-17 Score=164.60 Aligned_cols=202 Identities=12% Similarity=-0.014 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~---ay~~ 454 (714)
..+++++|..+...|+|++|+..|+++++..|. .++..+|.+++.+|++++|+..|+++++.+|+... +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 346778888888899999999999998887443 46777888888888887777777666666665432 4444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005106 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 455 rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
+|... + .+++.....|..++.++.+ +|++++|+..
T Consensus 84 ~g~~~--------~----~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~A~~~ 118 (225)
T 2yhc_A 84 RGLTN--------M----ALDDSALQGFFGVDRSDRD---------------------------------PQQARAAFSD 118 (225)
T ss_dssp HHHHH--------H----HHHC--------------C---------------------------------CHHHHHHHHH
T ss_pred HHHHH--------H----hhhhhhhhhhhccchhhcC---------------------------------cHHHHHHHHH
Confidence 44320 0 0112222233344444444 4455555555
Q ss_pred HHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (714)
Q Consensus 535 ~~~al~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (714)
|+++++..|+...+. .+......... .+ ...+.+|.+
T Consensus 119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~---------~~---------------------------------~~~~~~a~~ 156 (225)
T 2yhc_A 119 FSKLVRGYPNSQYTTDATKRLVFLKDR---------LA---------------------------------KYEYSVAEY 156 (225)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHH---------HH---------------------------------HHHHHHHHH
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHH---------HH---------------------------------HHHHHHHHH
Confidence 555555555443211 11111111110 00 122457888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+.|++++|+..|+++++..|+++ ++++.+|.+++.+|++++|+..++++....|+.
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 8889999999999999999998876 789999999999999999999999888887763
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=1.8e-16 Score=158.97 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..|+++++.+|+++.++..+..+ +... ...+.....+|.+++.+|++++|+..|++++++.|
T Consensus 116 ~~~~~~~l~~~P~~~~a~~a~~~l----~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 116 FSDFSKLVRGYPNSQYTTDATKRL----VFLK-------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHH----HHHH-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCcCChhHHHHHHHH----HHHH-------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 788999999999999876432221 1111 11234557899999999999999999999999999
Q ss_pred CH----HHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCCcc
Q 005106 670 SF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709 (714)
Q Consensus 670 ~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (714)
+. ++++++|.++....- -..-++.++.+..-+++.+
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~----~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQM----NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHCCSCCC
T ss_pred CCCccHHHHHHHHHHHHHcCC----cHHHHHHHHHHHhhCCCch
Confidence 86 489999998887653 3334566667666676655
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=3.3e-17 Score=150.68 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=106.2
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
.|+..+||+ ++.+.++|..+...|+|++|+..|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------ 46 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------ 46 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Confidence 356678997 7888899999999999999999888888777775
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
+.+|+++|.++.++|++++|+.++++|++++|+++++++++|.+++.+|++++|+..|
T Consensus 47 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 47 ----------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHH-HHHHHHHHh
Q 005106 662 EESIQMKRSFE-AFFLKAYAL 681 (714)
Q Consensus 662 e~Ai~i~~~~~-a~~~~~~~~ 681 (714)
++|++++|++. |....|.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 99999999988 776666543
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=4.2e-19 Score=190.54 Aligned_cols=148 Identities=14% Similarity=0.007 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLAL 525 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~l 525 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|++||+++|+. .++.++|.++..+
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999999999999999999999999999999999963 7788899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|++++|+.+|++|++++|++ +.
T Consensus 210 g~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~ 231 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN----------------------------------------------------------EK 231 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCCc----------------------------------------------------------HH
Confidence 99999998888888877775 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i 667 (714)
+|+++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|++++| -..|++.+..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999 4567776653
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=2.9e-17 Score=177.34 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=164.7
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhh
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L~P~~~~~ 548 (714)
.|...|++..++.++..++...++.++|+..++++|.++|+ ..+|+.|+.++..+| ++++++..+++++..+|++..
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~- 124 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ- 124 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-
Confidence 45667777888999999999999999999999999999996 899999999999999 699999999999999999854
Q ss_pred hhhHHHHHHHHHHHHhh-h-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH-----
Q 005106 549 EGRVAASQLHMLVREHI-D-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE----- 621 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~-~-~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e----- 621 (714)
+.+.++.+.... . .++ +++..++++|+.+|.+..+|+.|+.++.++|+++
T Consensus 125 -----aW~hR~wlL~~l~~~~~~------------------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 125 -----VWHHRLLLLDRISPQDPV------------------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp -----HHHHHHHHHHHHCCSCCH------------------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred -----HHHHHHHHHHHhcCCChH------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 233333222222 2 222 2488999999999999999999999999999998
Q ss_pred ---HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 622 ---AAMRSLQLARQHAASDHERLVYEGWILYDTSH-------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 622 ---eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-------~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
+++..++++++.+|.|..|+.++|+++..+|+ ++++++.++++|.++|+++ ||+.+...+...+
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998 7999999999999999999 9977666665433
No 119
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=2.1e-15 Score=161.28 Aligned_cols=302 Identities=14% Similarity=0.062 Sum_probs=221.5
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhH
Q 005106 349 CLLSEVAMNLDPRSDKTVCFLERLLESAE-T-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSI 418 (714)
Q Consensus 349 ~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~-~-~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~a~ 418 (714)
.++.++..... +.+....+++++....+ . ......++..+|.++...|++++|+..|++|+++.+ ..++
T Consensus 18 ~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44455544433 45566677777555332 2 233456788999999999999999999999998722 2236
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC-----hHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----SYP 481 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--------p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~-----~~a 481 (714)
.++|.++..+|++++|+..+++++++. |..+.++.++|. .++.++|...|++++++.|.. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 779999999999999999999999874 334455555543 256699999999999998864 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA---LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
|.++|.++...|++++|+..+++++++.+. +..+. .++.++...|++++|+..++++++..|....+. ..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~ 254 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--QG 254 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--HH
Confidence 999999999999999999999999987432 11221 244568899999999999999999887642211 11
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHH
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
.....+.+....+++++| +..++++++..+.. ..++..+|.++..+|++++|...+
T Consensus 255 ~~~~la~~~~~~g~~~~A------------------~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223334444445555555 67788887776542 358889999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
++|+++.+..+.. ..+.+.| +.....+++.+...|..+++--++
T Consensus 317 ~~al~~~~~~g~~-----~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~~ 360 (373)
T 1hz4_A 317 LDALKLANRTGFI-----SHFVIEG--EAMAQQLRQLIQLNTLPELEQHRA 360 (373)
T ss_dssp HHHHHHHHHHCCC-----HHHHTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccccHH-----HHHHHcc--HHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999998753322 2244455 677788889999999877776555
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=6.5e-17 Score=170.37 Aligned_cols=206 Identities=12% Similarity=0.022 Sum_probs=150.4
Q ss_pred hccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005106 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~L 474 (714)
..|++++|.+.+++|.+..+.. ++. ..|+++.|+..|+++ +.+|...|.+ ++|+..|.+|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-~~~------~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-FMK------WKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-SSS------CSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-ccC------CCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence 4678999999999988763321 111 148899999998887 4566777666 9999999999999
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 475 DPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 475 dP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.|.. +.+|.++|.+|..+|++++|+..|++|+++.+. ..++.+.|.+|.. |++++|+..|++|+++
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 8755 568999999999999999999999999998431 3456778889988 9999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
.|+...... .+.+++++|.++.++|+++
T Consensus 145 ~~~~~~~~~----------------------------------------------------~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 145 FENEERLRQ----------------------------------------------------AAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHTTCHHH----------------------------------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCChhH----------------------------------------------------HHHHHHHHHHHHHHcCCHH
Confidence 775411000 1234566666666677777
Q ss_pred HHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 622 AAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+|+..|++|+++.|++. .++.++|.+++.+|++++|+..|++++ ++|+|
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 77777777766665543 356666666666677777777777776 66654
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.2e-17 Score=175.15 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=144.5
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-------------
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYR-------ASSLMTKQNVEAALAEINRILGFKLA-LECLEL------------- 517 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~r-------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~------------- 517 (714)
.+.++|...|.+|++++|+..++|.+| +.++..++++.+++..+++++++.|+ ...++.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 334666777777777777777777777 67777777777777777777776664 222222
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 518 --------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 518 --------R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++..+|+|++|.+.|+.++..+|++ . +...++.+....++|++|
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------~-~~~~~a~l~~~~~r~~dA------------------ 154 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------L-VAWMKAVVYGAAERWTDV------------------ 154 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------H-HHHHHHHHHHHTTCHHHH------------------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------H-HHHHHHHHHHHcCCHHHH------------------
Confidence 4456777777777777777777777765 3 445555566666677766
Q ss_pred HHHHHHHHHhC-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 590 LSVIYQMLESD-AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--AS-DHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 590 l~~~~qaL~l~-P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--P~-~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
+..+++++... |. ...+++++|.++..+|++++|++.|++|+.-. |. ..++++++|++|..+|+.+||...|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444332 11 14589999999999999999999999999655 65 7789999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCC
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDS 688 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~ 688 (714)
++++|+ . ++ -+|.|.+.=|
T Consensus 235 ~a~~P~-~~~~----~aL~~~~~~~ 254 (282)
T 4f3v_A 235 QTTHPE-PKVA----AALKDPSYRL 254 (282)
T ss_dssp HHHSCC-HHHH----HHHHCTTCCC
T ss_pred HhcCCc-HHHH----HHHhCCCCCC
Confidence 999999 5 33 3456665543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=3.6e-17 Score=156.17 Aligned_cols=68 Identities=10% Similarity=-0.097 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|+++.|+.+
T Consensus 71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666654
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=5.5e-17 Score=170.89 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=145.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
.|++.+|.+.+.++.+..+.. ++. .-+++++|+..|++| |.+|..+|++++|+..|.++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---~~~--~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---FMK--WKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---SSS--CSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---ccC--CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 577889999999888876641 111 014558888888776 6789999999999999999999
Q ss_pred cCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 508 FKLA-------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 508 l~P~-------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
+.+. ...+.+.|.+|..+|++++|+..|++|+++.+... +..
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------------------~~~----------- 113 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------------------TPD----------- 113 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------------------CHH-----------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------------------CHH-----------
Confidence 8652 23567788999999999999999999999855431 000
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHC 654 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~ 654 (714)
..+.+++++|.++.. |++++|+..|++|+++.|.. +.++.++|.++..+|++
T Consensus 114 ---------------------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 114 ---------------------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp ---------------------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 013467889999999 99999999999999999875 68899999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-------HHHHHHHHHhh
Q 005106 655 EEGLRKAEESIQMKRSF-------EAFFLKAYALA 682 (714)
Q Consensus 655 eeAl~~ye~Ai~i~~~~-------~a~~~~~~~~~ 682 (714)
++|+..|++|+.+.|.. .+++..|.++.
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 99999999999986532 26777777664
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=1.2e-16 Score=153.88 Aligned_cols=155 Identities=14% Similarity=-0.055 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
....+|..+...|++++|+..|++|++.+ +..++.++|.++...|++++|+..++++++..| .+..+...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 35678999999999999999999999884 566789999999999999999999999999999 66655444322
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
....+|+..|++|++++|+++.+++++|.++..+|++++|+..|+++++++|+ +..+.+++.++..+|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12256899999999999999999999999999999999999999999999996 44788899999999999999999
Q ss_pred HHHHHh
Q 005106 535 VQAILT 540 (714)
Q Consensus 535 ~~~al~ 540 (714)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.4e-16 Score=180.13 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=151.7
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 488 SLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALED----------YQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 488 ~l~~l~r-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd----------~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.++..|. .++|+..++++|+++|+ +.+|+.|+.++..+|+ +++|+..++++++.+|++.. +.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------aW 110 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------TW 110 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------HH
Confidence 3445554 56889999999999996 8999999999999998 99999999999999999954 33
Q ss_pred HHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 005106 556 QLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQ 632 (714)
Q Consensus 556 ~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~ 632 (714)
+.++-+..... +|++ ++.+++++|++||.+..+|++||.++.++| .+++|++.+.++++
T Consensus 111 ~hR~w~l~~l~~~~~~~------------------el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWAR------------------ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHHTCSSCCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccccHHH------------------HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 33333333333 3344 489999999999999999999999999999 99999999999999
Q ss_pred hCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 633 HAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~--------------G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
.+|+|..|++++|.++..+ +.+++|++.+++||.++|+++ ||+.+++++....
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 9999999999999999986 668999999999999999999 9999999998754
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=1e-16 Score=153.04 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=101.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+ +..|.++|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999999999999999999995 8888999999999999999998888887777775
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+.+|+++|.++.++|++++|+.
T Consensus 104 ----------------------------------------------------------~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 104 ----------------------------------------------------------YTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 4678889999999999999999
Q ss_pred HHHHHHHhCCCCh
Q 005106 626 SLQLARQHAASDH 638 (714)
Q Consensus 626 ~~~~Al~l~P~~~ 638 (714)
.|++|+++.|+..
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999875
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=3.7e-18 Score=183.20 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=151.8
Q ss_pred hHHHHHHHH----HHhcCCCChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 462 DKRWEDLDK----ATALDPTLSYPYMYRASSLM------------TKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~k----Ai~LdP~~~~ay~~rg~~l~------------~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
++|+..+.+ ++.++|++ +|.++|.... .++++++|+..|+++++.+|+ +..+.++|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 66677765 5666665543 788999999999999999996 7888999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+..|++|++++|++..+. .++..+++|..+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~-------------------------------------------~~~~~~~~~~~~ 196 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFS-------------------------------------------NEEAQKAQALRL 196 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCC-------------------------------------------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------------------------------hHHHHHHHHHHH
Confidence 9999999999999999999973210 133455566678
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. ++++.|.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988 89998887754
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=1.8e-16 Score=165.57 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +.+++++|.++..+|++++|+..|+++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3377778888999999999999999999999999999999999999999996 888999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++....+......+ .......| ........|.++.....++.++ .|
T Consensus 99 l~l~p~~~~~~~~~~~~~~---~~~~~~~~------------------------~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 99 YSLAKEQRLNFGDDIPSAL---RIAKKKRW------------------------NSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHHTTCCCCSHHHHHH---HHHHHHHH------------------------HHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHhCccchhhHHHHHHHHH---HHHHHHHH------------------------HHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 9999987543332111111 01111111 1222345677777777777765 79
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCC------
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSS------ 689 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~------ 689 (714)
++++|++.+++|++++|++......++-++... +++++|...|+++.+-.+..+ .+|.=.+. .+---||-
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~-~~~~~dPv~~~~gh 228 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS-FELMREPCITPSGI 228 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTT-CSBCSSEEECSSCC
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCc-CCHhcCCeECCCCC
Confidence 999999999999999999998888888888777 789999999999988544433 33322221 11222333
Q ss_pred --chhhHHHHHHHhhc-CCCCcc
Q 005106 690 --CSSTVVSLLEDALK-CPSDRL 709 (714)
Q Consensus 690 --~~~~~~~~~~~~~~-~~~~~~ 709 (714)
|.+.+...|++--. ||..+-
T Consensus 229 ~f~~~~i~~~~~~~~~~cP~~~~ 251 (281)
T 2c2l_A 229 TYDRKDIEEHLQRVGHFNPVTRS 251 (281)
T ss_dssp EEETTHHHHHHHHTCSSCTTTCC
T ss_pred EECHHHHHHHHHHCCCCCcCCCC
Confidence 24566677766433 998763
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=3.8e-15 Score=145.92 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~ 559 (714)
..++++|.++...|++++|+..|++++ +|++..+.++|.++..+|++++|+..|+++++++|++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-------------- 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence 457889999999999999999999996 7788888899999999999999998888887777765
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 005106 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH- 638 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~- 638 (714)
+.+|+++|.++..+|++++|+..+++|+++.|++.
T Consensus 71 --------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 106 (213)
T 1hh8_A 71 --------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106 (213)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred --------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence 34577888888899999999999999999888777
Q ss_pred ---------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 639 ---------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 639 ---------------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
.+++++|.+++.+|++++|+..|++|+++.|+.. +...+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999999999999999999999876 5555555544
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=2.9e-15 Score=170.90 Aligned_cols=159 Identities=9% Similarity=-0.067 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
|++++|++.|+++++.+|+++.+|.++|.. +++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444444444444444444444444321 3446777778889999999999999999999999999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 005106 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (714)
Q Consensus 505 AL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (714)
+++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------- 124 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-------------------------------------- 124 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------
Confidence 9999996 8888999999999999999999888888888776
Q ss_pred ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.+++++|.++..+ |++++|+..++++++.+|++..++..++
T Consensus 125 --------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 --------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp --------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred --------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 24566778888888 8888888888888888888888887776
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.65 E-value=2.1e-17 Score=184.81 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=147.5
Q ss_pred cchHHHHHHHHH----HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 397 KEYDEAEHLFEA----AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 397 g~y~eA~~~f~~----AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
..+++|+..+++ +|.++|.++|...|... ..+.|+....|.. ....+++|+..|++++
T Consensus 200 ~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~----------------~~ip~~~~l~y~~--~l~~~~~A~~~~~~~~ 261 (457)
T 1kt0_A 200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPK----------------FGIEPNAELIYEV--TLKSFEKAKESWEMDT 261 (457)
T ss_dssp HHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG----------------GTBCTTCCEEEEE--EEEEEECCCCGGGSCH
T ss_pred hHHHHHHHhCCCCCEEEEEECcccccCCCCCcc----------------cCCCCCCEEEEEh--hhhhcccCcchhhcCH
Confidence 367888887777 77777776554433211 1122221111100 1123378888999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----------------LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----------------~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.+|+.+.+|.++|.++..+|++++|+..|++||+++|+ ..++.++|.+|..+|++++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999996 3778889999999999999998888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
+|++++|++ +.+|+++|.++..
T Consensus 342 ~al~~~p~~----------------------------------------------------------~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 342 KALGLDSAN----------------------------------------------------------EKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHSTTC----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHhcCCcc----------------------------------------------------------HHHHHHHHHHHHH
Confidence 888877775 4568899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+|++++|+.+|++|++++|++.+++.++|.++..+|++++|...
T Consensus 364 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=7.7e-15 Score=146.38 Aligned_cols=186 Identities=10% Similarity=-0.079 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 005106 400 DEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479 (714)
Q Consensus 400 ~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~ 479 (714)
.+|+.+|++|.+.+++.+++.+|.++...|++++|+.+|.++++ ++++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------------------~g~~ 50 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--------------------------------QGDG 50 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------------TTCH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------------------------------cCCH
Confidence 36888999999999999999999999888887777777655443 2456
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 480 YPYMYRASSLMTKQ----NVEAALAEINRILGFKL-ALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 480 ~ay~~rg~~l~~l~----r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
.+++++|.+|.. + ++++|+..|++|++ + ++.+++++|.+|.. .+|+++|+..|+++++.+|..
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----- 122 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----- 122 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----
Confidence 777788888777 6 78888888888874 4 47777788888776 778888888888877776641
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRS 626 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~ 626 (714)
+++.+++++|.++.. .+++++|+..
T Consensus 123 ---------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 123 ---------------------------------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred ---------------------------------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 124456777777777 7788889999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILYDT-S-----HCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly~~-G-----~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
|++|+++ |.++++++++|.++... | ++++|+..|++|++.........+.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999888 77888899999988764 3 8899999999998886655554443
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.64 E-value=2e-15 Score=142.42 Aligned_cols=122 Identities=12% Similarity=-0.035 Sum_probs=101.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|++|++++|+++.+++++|.++...|++++|+..|+++++++|+ +..|+++|.++..+|++++|+..|+++++++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 478899999999999999999999999999999999999999885 7888888888888888888888877777777765
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+.+++++|.++..+|++++|+.
T Consensus 89 ----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 89 ----------------------------------------------------------PRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------chHHHHHHHHHHHcCCHHHHHH
Confidence 3457788888888888888888
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 005106 626 SLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~ 646 (714)
.|++|++++|++++....+..
T Consensus 111 ~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 111 GLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHCcCCCcchHHHHH
Confidence 888888888888776544433
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=5.9e-16 Score=148.85 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+..+.++|+++..+|+|++|+..|++||+++|+ ..+|.+||.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 467889999999999999999999999999997 128899999999999999999999999876
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----HHHHHHHHHcCChH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLLRLNCPE 621 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~----~~~g~~L~~lg~~e 621 (714)
|+++++++|.++.+| +|+|.+|..+|+++
T Consensus 87 -----------------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 87 -----------------------------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp -----------------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 366677788888888 99999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHH
Q 005106 622 AAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~ 643 (714)
||+.+|++|++++|+++.+.--
T Consensus 120 EAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 120 EAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999998876443
No 135
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=2.7e-15 Score=156.91 Aligned_cols=158 Identities=15% Similarity=-0.049 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..+++.+|..+...|++++|+..|++|++.+ +..++.++|.++..+|++++|+..+++++..+|+....+...+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 4566889999999999999999999999985 46688899999999999999999999999999976555444432
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
-+..++|+..|++|++++|+++.+++++|.+|...|++++|+..|+++++.+|+ ..++.+++.++..+|+.++|+.
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 123488999999999999999999999999999999999999999999999996 4567788999999999999999
Q ss_pred HHHHHHh
Q 005106 534 DVQAILT 540 (714)
Q Consensus 534 d~~~al~ 540 (714)
.|++++.
T Consensus 277 ~~r~al~ 283 (287)
T 3qou_A 277 XYRRQLY 283 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 136
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=2.3e-13 Score=165.81 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=133.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHH-HHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQ-ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~-~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.|.++...|.+++|+..|+++- .+.. ...+. ..+.+ ++|++.+++ .+.+..|.++|.++...|+++||
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nl---drAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNL---DRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhH---HHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHH
Confidence 4555555566666655555542 1111 12222 22222 333333332 24455556666666666666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH---HHHHHHhhhhhhHHHHHH
Q 005106 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL---HMLVREHIDNWTIADCWL 575 (714)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~---~~~l~~~~~~~~~A~~~~ 575 (714)
+..|.|| -+++.+...+.++..+|+|++|++.|..|++.+|+......-+.++.. ...+...++....+ .|.
T Consensus 1125 IdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~ 1199 (1630)
T 1xi4_A 1125 IDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQ 1199 (1630)
T ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHH
Confidence 6666554 234555555555566666666666666655555442100000000000 01111112222222 233
Q ss_pred hhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------
Q 005106 576 QLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------------------- 635 (714)
Q Consensus 576 ~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------------------- 635 (714)
+++++..+.++++ |...|.+| ..|.++|.+|.++|++++|++.+++|...++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555556555 55566664 4677777777777777777777777755544
Q ss_pred ------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 636 ------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 636 ------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
.+++-+..++..+...|+|+||+..+|+++.++|.-. .|--.|.+++-.
T Consensus 1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 2556667788889999999999999999999998887 565667766554
No 137
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=2.2e-14 Score=154.58 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=146.0
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
.++.+|..+...|++++|+..|.+|+.+.+..+. +|..+.+|.++|.++..+|+++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------------------------DIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------------------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------------------------hHHHHHHHHHHHHHHHHcCCcH
Confidence 4556788888888888888888887776421100 1122345666666666666666
Q ss_pred HHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhh
Q 005106 497 AALAEINRILGFKLA--------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 497 eAl~~~~kAL~l~P~--------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
+|+..+++|+++.+. ..++.+.|.++..+|++++|+..|++|+++.+....-.....+...++.+....+++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 666666666665321 223445666666666666666666666665433211112233444444444444444
Q ss_pred hHHHHHHhhhhccccccccchHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCh
Q 005106 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-----ASDH 638 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~al~~~~qaL~-----l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-----P~~~ 638 (714)
++| +..++++++ .+|..+.+++++|.++.++|++++|+..+++|+++. |...
T Consensus 239 ~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 239 QMA------------------VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHH------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444 555666666 678888899999999999999999999999999994 4455
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 639 ERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 639 ea~~~~G~~ly~~G~---~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
..+..+|.++...|+ +++|+..+++. ...|... .+...|..+....
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 567788888888899 99999888873 2333333 6666776666554
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=2.1e-15 Score=140.12 Aligned_cols=127 Identities=12% Similarity=-0.073 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
..|.++++++|++..+++++|.++...|++++|+..|+++++++|+ +..|..+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3578888899999999999999999999999999999999998885 788888888888888888888877777777776
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+ +.+++++|.++..+|++++|+
T Consensus 85 ~----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 85 E----------------------------------------------------------PRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp C----------------------------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 5 345778888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
..|+++++++|++++....+..+.-.
T Consensus 107 ~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 107 SGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 88888888888888776655555433
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=9.4e-15 Score=137.81 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ +..++.+|.++...|++++|+..|+++++++|++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 54 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------------- 54 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------------------------
Confidence 468889999985 7778889999999999999988877777777665
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.+|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+
T Consensus 55 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 55 -------------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109 (148)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 005106 659 RKAEESIQMKRSFE 672 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (714)
..|++|++++|+..
T Consensus 110 ~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 110 SGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHCcCCC
Confidence 99999999988744
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.60 E-value=3.8e-17 Score=182.78 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=128.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 005106 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (714)
.++++++|+..|+++++.+|+ ...+.++|.++..+|+|++|+..|++|++++|++..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------- 306 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------------- 306 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-------------------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-------------------
Confidence 678899999999999999996 788899999999999999999999999999999843110
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
+...+++|....+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++
T Consensus 307 ------------------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 307 ------------------------KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 11123344556889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 650 DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+|++++|+..|++|++++|++. ++.++|.++..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 99998887653
No 141
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=5.1e-15 Score=142.37 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--------------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--------------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--------------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~ 447 (714)
.+..+.++|..++..|+|++|+..|++||+++|.+ +|.++|.++..+|++++|+.+|++||++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 45566889999999999999999999999997662 7888888888888888888888766653
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY----MYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay----~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
|+++++++|+++.+| +++|.++..+|+++||+.+|++||+++|+
T Consensus 87 --------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 87 --------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp --------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 677888899998888 88888888888888888888888888873
No 142
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.59 E-value=6e-14 Score=124.43 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~ 558 (714)
.+|+++|.++...|++++|+..|+++++.+|+ +..+...+.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 57888888999999999999999999888885 6777778888888888888888777777766654
Q ss_pred HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 559 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+.+++++|.++...|++++|+..++++++..|++.
T Consensus 69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34567788889999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.++..+|.+++.+|++++|+..+++++.++|+
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999886
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=6.1e-15 Score=154.70 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=123.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhH-------HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGL-------ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~l-------g~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg 456 (714)
.+..|.-+ .-+++.+|.+.|.+|++++| .++|.++ +.++...++..+++..+.+++.+
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l------------ 76 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI------------ 76 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC------------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 34455544 46777777777777777754 3445555 44555555555555555555554
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHH---------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMY---------------------RASSLMTKQNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~---------------------rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
.|+...++++ .|.+|.+.|+|++|.+.|+.++...|+....
T Consensus 77 ------------------~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~ 138 (282)
T 4f3v_A 77 ------------------SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA 138 (282)
T ss_dssp ------------------CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHH
T ss_pred ------------------ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHH
Confidence 4444433333 4555666666666666666666555542255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHH
Q 005106 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (714)
Q Consensus 516 ~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~q 595 (714)
+.++.++.+.|||++|+..|+++.+..+++. ...+...++.+...++++++| +..|++
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~----~~~a~~~LG~al~~LG~~~eA------------------l~~l~~ 196 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPDKFL----AGAAGVAHGVAAANLALFTEA------------------ERRLTE 196 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----HHHHHHHHHHHHHHTTCHHHH------------------HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCCccc----HHHHHHHHHHHHHHCCCHHHH------------------HHHHHH
Confidence 5566666666666666666665544422210 012344444444445555555 455566
Q ss_pred HHHhC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 596 MLESD--AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 596 aL~l~--P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
++... |. .+++++++|.+|.++|+.++|...|+++++.+|+ +.+...+
T Consensus 197 a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 197 ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 65433 44 5678999999999999999999999999999999 7765443
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=2e-14 Score=140.69 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
+.+.++++|..+...|++++|+..|++|+.. ...++.++|.++..+|++++|+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~------------------------- 58 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEK------------------------- 58 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence 4667788999999999999999999998744 45577778887777777666655
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----------------HHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----------------ECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~----------------~~~~~R~~~~~~ 524 (714)
.|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ . ..++++|.++..
T Consensus 59 -----~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 59 -----AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp -----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 456666677777777778888888888888888888888876663 3 667777888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCch
Q 005106 525 LEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+|++++|+..|+++++++|++.
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccCHHHHHHHHHHHHHcCcccc
Confidence 8888888888888888888763
No 145
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=2.5e-14 Score=143.90 Aligned_cols=218 Identities=9% Similarity=-0.088 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHh-------cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATA-------LD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~kAi~-------Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~ 524 (714)
++|+..|++|++ .+ |..+.+|.++|.++..+|++++|+..|++++++. |. ...+.++|.++..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 555555555555 24 7889999999999999999999999999999883 43 5667889999999
Q ss_pred cCCHHHHHHHHHHHHhhC-----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 005106 525 LEDYQAALCDVQAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~-----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l 599 (714)
+|++++|+..|++++++. |++. ....+...++.+....+++++| +..+++++++
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~ 156 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLALLCQNQGKAEEV------------------EYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHH------------------HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHH
Confidence 999999999999999983 3221 1133455555555555566655 7889999999
Q ss_pred --------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCCHHH------
Q 005106 600 --------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---------AASDHERLVYEGWILYDTSHCEE------ 656 (714)
Q Consensus 600 --------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---------~P~~~ea~~~~G~~ly~~G~~ee------ 656 (714)
+|..+.+++++|.++..+|++++|+..+++++++ .|.....+...|......+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 8888999999999999999999999999999998 67778888888888777655444
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 657 GLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 657 Al~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+...+++.....|... +++..|.++.... .-..-+.+++.|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQG----KLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 3433443333445555 8888888887754 345567777887764
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=9.4e-15 Score=135.75 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ ...++.+|..+...|++++|+..|+++++++|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 51 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------------- 51 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence 577888888885 7778888999999999999988887777777765
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus 52 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 52 -------------------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 005106 659 RKAEESIQMKRSFE 672 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (714)
..|++++++.|+..
T Consensus 107 ~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 107 SGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999998665
No 147
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=1.6e-12 Score=158.39 Aligned_cols=254 Identities=9% Similarity=-0.000 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERS 456 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg 456 (714)
..+++++|.++...|++++|+..|.+| +...++..+|.++.+.|++++|++.+..|++..++ .|.+|.+.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 567899999999999999999999887 77888999999999999999999999999987644 678887775
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++ + ++++|- +..+...|.+.|..+.++|+|++|+..|++| ..|...+.+|..+|++++|+..++
T Consensus 1182 rl---e-ele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RL---A-ELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CH---H-HHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 54 5 466663 3445567889999999999999999999997 356677889999999999999999
Q ss_pred HHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 005106 537 AILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 537 ~al~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
+|...++=... ....+.....+..........+..+-....|+. .+.++ ++..++++|.++|.+...+..+|.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~---~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD---RGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 99554331100 000000000000000111222222222334433 34454 688999999999999999988888
Q ss_pred HHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHH
Q 005106 613 LLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 613 ~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
++.+ -++..|+++.|...+++.| .+++.+.....++..-|+++.|+
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 8776 7788899999999999988 88888888888888899999999
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=8.9e-14 Score=129.61 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 467889999999999999999999999999995 7888889999999999999988888888777765
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3467889999999999999999999999999999
Q ss_pred hhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcC
Q 005106 638 HERLVYEGWI--LYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 638 ~ea~~~~G~~--ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
..++.+++.+ +..+|++++|+..++++..+-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999666555 889999999999999887653
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.7e-14 Score=127.31 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|..+..|.++|.++...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 445667777777777777777777777777777774 6777777777777777777777766666666654
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
+.+|+++|.++..+|++++|+..|+++++++
T Consensus 72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3446667777777777777777777777777
Q ss_pred ------CCChhHHHHHHHHHH
Q 005106 635 ------ASDHERLVYEGWILY 649 (714)
Q Consensus 635 ------P~~~ea~~~~G~~ly 649 (714)
|++.+++..++.+..
T Consensus 103 p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 103 AEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHH
Confidence 777777666666543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=5e-14 Score=133.52 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=99.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-+|..+.+|+.+|.++...|++++|+..|+++|+++|+ +..+.++|.+|..+|++++|+.+|+++++++|++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Confidence 45667788889999999999999999999999999985 7888888888999999888888887777777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+|+++|.++..+|++++|+..|+++++
T Consensus 79 ---------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 ---------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34578888899999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHh
Q 005106 633 HAASDHERLVYEGWILYD 650 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~ 650 (714)
++|++.++++++|+....
T Consensus 108 ~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 108 AEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHSSSCCHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHH
Confidence 999999888888876543
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=8.7e-15 Score=143.20 Aligned_cols=168 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H--------------
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------------- 512 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-------------- 512 (714)
.++.....|.+ ++|.+.++...+..|..+..+.++|.++...|++++|+..|++++++.|+ +
T Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 10 HSSGRENLYFQ---GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhhhhhhhhc---cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34444444444 55555555566666667778888899999999999999999999988874 4
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 513 --ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 513 --~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 121 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--------------------------------------------- 121 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------------------------------------
Confidence 667778888888888888888777777776665
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+.+++++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|+.+++... .
T Consensus 122 -------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~---------~ 179 (198)
T 2fbn_A 122 -------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL---------T 179 (198)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 456788999999999999999999999999999999999999999998887776622 2
Q ss_pred HHHHHHHHHHhhccC
Q 005106 671 FEAFFLKAYALADSS 685 (714)
Q Consensus 671 ~~a~~~~~~~~~~~~ 685 (714)
|..+|.+|-.+.|..
T Consensus 180 ~~~~f~~~~~~~~~~ 194 (198)
T 2fbn_A 180 FGGMFDKGPLYEEKK 194 (198)
T ss_dssp ---------------
T ss_pred HHHHhcccchhhccc
Confidence 445666666665543
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.53 E-value=5e-14 Score=146.92 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|+.+.+++.+|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++. .+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV------KA 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH------HH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HH
Confidence 778899999999999999999999999999999995 88899999999999999999999999999999984 35
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
...++.+....+++++| +..++++++++|+++..+........ +...+...........
T Consensus 75 ~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEA------------------IANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 55566666667777777 78899999999988655544333333 3344555666777789
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 635 P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+++....+|-.+ .|++++|+..|++|++++|+..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 99999999998876 7999999999999999999864
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=7.9e-14 Score=132.12 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
+..+..+|.++...|++++|+..|+++++++|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------------------- 44 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----------------------------------------------
Confidence 5667778888888888888888777777777665
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|+++++++|++
T Consensus 45 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 45 ------------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhhc
Q 005106 672 E-AFFLKAYALAD 683 (714)
Q Consensus 672 ~-a~~~~~~~~~~ 683 (714)
. +++.+|++.+-
T Consensus 113 ~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 113 GSDAMKRGLETTK 125 (164)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8 99999988653
No 154
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=5.2e-13 Score=118.31 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=90.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.+|.++...|++++|+..+.+++...|+...++...|. .++.++|+..|+++++++|++..++.++|.++...|++
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33444444444444444444444444433333333321 12336666667778888888888999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
++|+..++++++..|+ ...+..++.++...|++++|+..|+++++++|+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999995 788888999999999999999999999999987
No 155
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=3.1e-13 Score=134.67 Aligned_cols=161 Identities=13% Similarity=-0.090 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKG----HKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G----~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..+.+++|.++...+++++|+.+|++|++.+++.+++++|.+|.. | ++++|+.+|.++++ +..+.+++++|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR 93 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999988 7 99999999999976 457778887764
Q ss_pred c--------CChhHHHHHHHHHHhcCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005106 458 Y--------CEGDKRWEDLDKATALDP--TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFL 523 (714)
Q Consensus 458 ~--------~~~~eAl~d~~kAi~LdP--~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~ 523 (714)
+ .+.++|+..|++|++..| +++.+++++|.+|.. .+++++|+..|++|+++.+++.+.+++|.+|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 345999999999999999 569999999999999 99999999999999998446778899999887
Q ss_pred hc-C-----CHHHHHHHHHHHHhhCCCc
Q 005106 524 AL-E-----DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 524 ~l-g-----d~e~Al~d~~~al~L~P~~ 545 (714)
.. | |+++|+..|++|.+..+..
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 54 3 9999999999999997654
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.51 E-value=8.5e-14 Score=127.65 Aligned_cols=113 Identities=6% Similarity=0.023 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+.+|.++|+++...|++++|+..|++||+++|+ +.++.++|.+|..+|++++|+.+|+++++++|++...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----- 80 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK----- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH-----
Confidence 44678999999999999999999999999999996 888999999999999999999999999999998732110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
.-+.+|+++|.++..+|++++|+..|++|++..|
T Consensus 81 ----------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 81 ----------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0124577888888889999999999999988888
Q ss_pred CChhHH
Q 005106 636 SDHERL 641 (714)
Q Consensus 636 ~~~ea~ 641 (714)
+ ++..
T Consensus 115 ~-~~~~ 119 (127)
T 4gcn_A 115 D-PELV 119 (127)
T ss_dssp C-HHHH
T ss_pred C-HHHH
Confidence 5 4443
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=7e-13 Score=138.03 Aligned_cols=179 Identities=9% Similarity=-0.015 Sum_probs=135.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+|+....+...+..+...|++++|+..++++++..|. .. .++..|.++...|++++|+..|++++++.++...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455566677788888888888888888888887664 21 1334566778888888888888888887766533
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH---HhCCCCh----hHHHHHHHHHHHcCCh
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAPKG----VLYFRQSLLLLRLNCP 620 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL---~l~P~~~----~~~~~~g~~L~~lg~~ 620 (714)
..+...+....+.+....+++++| +..+++|+ +..|.+. .+++++|.++..+|++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 333344555666666666666666 67778887 5556643 6899999999999999
Q ss_pred HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCH
Q 005106 621 EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSF 671 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i~~~~ 671 (714)
++|+..+++|+++.++ -+.+++++|.++..+|++++| ...|++|+.+...+
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999764 278999999999999999999 77799999874433
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-13 Score=121.25 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=107.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-.|....+|+++|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 83 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------- 83 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------
Confidence 35777889999999999999999999999999999995 7888889999999999999988888877777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+++++|.++..+|++++|+..++++++
T Consensus 84 ---------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 84 ---------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677889999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCC
Q 005106 633 HAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~G~ 653 (714)
++|++.+++..+|.++..+|+
T Consensus 113 ~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 113 LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HCGGGTHHHHHHHHHHHHHTC
T ss_pred hCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999988875
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=1.8e-13 Score=121.25 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=110.0
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
.+.+|+.+.+|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 79 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence 4567778889999999999999999999999999999995 7888889999999999999988888887777765
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
+.+++++|.++..+|++++|+..++++
T Consensus 80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345778899999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 631 RQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 631 l~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
++++|++..++..+|.++..+|+++
T Consensus 107 ~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998863
No 160
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.50 E-value=8.2e-14 Score=134.31 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=90.5
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC-CCC-cCCcceEEeCCCCCCHHHHHHHHHhhccCC--------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG-SFM-ESLCEDIDLSENNISPSGLRIISDFSVTGS-------------- 246 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~-~~~-Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~-------------- 246 (714)
|+|+. +|+.|.+||.| |++|+||++||.+ ++. |+.+..|.|+ +|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~--~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECT--TSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCC--CccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77875 89999999999 9999999999998 888 7888899999 599999999999999998
Q ss_pred ------------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC--CHhhHHHHHHH
Q 005106 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGY 294 (714)
Q Consensus 247 ------------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~l~l~~~ 294 (714)
+. ++.+++.+|+.||++|++..|.+.|+++++.++. +++....++..
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I 140 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNI 140 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTC
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 76 8999999999999999999999999999999986 34554444433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=5.1e-14 Score=129.13 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=82.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-------HHHHHHH
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------ECLELRF 519 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-------~~~~~R~ 519 (714)
+|.+|+..|++ ++|+..|++||+++|+++.+|.++|.+|..+|++++|+.+|++||+++|+ . .++.++|
T Consensus 14 lG~~~~~~~~~---~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDF---EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45555555444 77788888999999999999999999999999999999999999999884 2 3567789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.++..+|++++|+..|+++++++|+.
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 99999999999999999999999984
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=9.9e-14 Score=132.56 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDY--QAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~--e~Al~d~~~ 537 (714)
++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++ ++|+..|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666663 5555555555 4455554 444444444
Q ss_pred HHhhCC
Q 005106 538 ILTLSP 543 (714)
Q Consensus 538 al~L~P 543 (714)
+++++|
T Consensus 107 al~~~p 112 (177)
T 2e2e_A 107 ALALDS 112 (177)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 333333
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=3e-13 Score=129.21 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 489 l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
+...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------- 78 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--------------------- 78 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence 45678899999999999999995 78888899999999999999999999999999872
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCChhHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~--eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
.+++++|.+ +...|++ ++|+..++++++++|++..+++++
T Consensus 79 -------------------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 121 (177)
T 2e2e_A 79 -------------------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121 (177)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 234445555 4566666 667777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 645 GWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 645 G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+++.+|++++|+..|+++++++|+..
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777777666654
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=7.8e-15 Score=165.10 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+.+|.++|.++..+|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|++|++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence 34567888999999999999999999999999996 8888999999999999999999888888887776
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+.+|+++|.++..+|++++|+..|++|++++|
T Consensus 74 ------------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 74 ------------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34688899999999999999999999999999
Q ss_pred CChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCHH-HHHH
Q 005106 636 SDHERLVYEGWI--LYDTSHCEEGLRKAE-----------ESIQMKRSFE-AFFL 676 (714)
Q Consensus 636 ~~~ea~~~~G~~--ly~~G~~eeAl~~ye-----------~Ai~i~~~~~-a~~~ 676 (714)
++.+++.++|.+ +..+|++++|++.|+ ++++++|++. +.+.
T Consensus 106 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 106 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 999999999999 999999999999999 9999988875 4433
No 165
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.47 E-value=8.2e-14 Score=133.72 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC---
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV----------EAALAEINRILGFKLA-LECLELRFCFFLALE--- 526 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~----------~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--- 526 (714)
+++|+..|++|++++|+++.+|+++|.++.+++++ ++|+..|++||+++|+ .++|+++|.+|..+|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 39999999999999999999999999999999886 5999999999999996 899999999999885
Q ss_pred --------CHHHHHHHHHHHHhhCCCc
Q 005106 527 --------DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 527 --------d~e~Al~d~~~al~L~P~~ 545 (714)
++++|+..|++|++++|++
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999987
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.4e-13 Score=120.89 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+.+|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hC
Q 005106 541 LS 542 (714)
Q Consensus 541 L~ 542 (714)
++
T Consensus 101 ~~ 102 (126)
T 3upv_A 101 KD 102 (126)
T ss_dssp HH
T ss_pred hC
Confidence 99
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=2.8e-13 Score=128.07 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF------------------KLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l------------------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
+..+.++|..+...|++++|+..|++||.+ +|. ..++.++|.+|..+|++++|+.+|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467888888888888888888888888888 443 4555666666666666666666665555
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (714)
+++|++ +.+|+++|.++..+|+
T Consensus 91 ~~~p~~----------------------------------------------------------~~a~~~~g~~~~~~g~ 112 (162)
T 3rkv_A 91 KREETN----------------------------------------------------------EKALFRRAKARIAAWK 112 (162)
T ss_dssp HHSTTC----------------------------------------------------------HHHHHHHHHHHHHTTC
T ss_pred hcCCcc----------------------------------------------------------hHHHHHHHHHHHHHhc
Confidence 555554 2345666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCh-hHHHHHHHHHH
Q 005106 620 PEAAMRSLQLARQHAASDH-ERLVYEGWILY 649 (714)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly 649 (714)
+++|+..|++|++++|++. .+...++.+.-
T Consensus 113 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 113 LDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6666666666666666666 44445554443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.45 E-value=8e-13 Score=119.92 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=95.5
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
..+|..+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 467888888999999999999999999999999988886 7888888888888888888888777777776665
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
+.+|+++|.++..+|++++|+..+++|+
T Consensus 77 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 77 ----------------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457788888888888888888888888
Q ss_pred HhCCC-----ChhHHHHHHHHHHhc
Q 005106 632 QHAAS-----DHERLVYEGWILYDT 651 (714)
Q Consensus 632 ~l~P~-----~~ea~~~~G~~ly~~ 651 (714)
+++|+ +.++...++.+....
T Consensus 105 ~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 105 SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 88888 666665555554443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=4.3e-13 Score=121.98 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++.
T Consensus 40 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 33334444444678899999999999999999999999999999999999999999999999999999999999999874
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=1.6e-12 Score=135.19 Aligned_cols=159 Identities=10% Similarity=0.004 Sum_probs=117.6
Q ss_pred ChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcC
Q 005106 460 EGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALE 526 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~------ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lg 526 (714)
.+++|+..|+++++..|..+. .|..+|.++...|++++|+..|++|+.+.+. ..++.+.|.+|..+|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 337777777777776666544 2334677777777777777777777775432 124566777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|++|+++-.... ...|..+.+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~---------------------------------------------------~~~~~~~~~ 198 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALH---------------------------------------------------DNEEFDVKV 198 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSS---------------------------------------------------CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcc---------------------------------------------------cchhHHHHH
Confidence 77777777777765422210 112334567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G-~~eeAl~~ye~Ai~i~~ 669 (714)
++++|.++.++|++++|+..+++|+++.+.. +.+++++|.+++.+| ++++|+..|++|+.+-.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998766 889999999999999 57999999999998743
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=3.5e-13 Score=127.40 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=97.9
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 414 ~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
.+..+...|..++..|++++|+..|+++|.+.+.... .... .++ ....++|.++.+|.++|.++..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~--~~~------~~~~~~~~~~~~~~nla~~~~~~~ 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKP--GEP------EWVELDRKNIPLYANMSQCYLNIG 77 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCT--TSH------HHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCC--CHH------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455677888999999999999998888887321100 0000 000 013457888999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++++|+..+++||+++|+ +.+++.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999996 89999999999999999999999999999999984
No 172
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=1.7e-12 Score=120.88 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~ 458 (714)
.....++.+|..+...|++++|+..|+++++.++ ..++.++|.++...|++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~--------------------------- 63 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------------- 63 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------------
Confidence 3455666777777777777777777777776643 33444555555555544
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDV 535 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~e~Al~d~ 535 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+.. ++..+...|++++|+..+
T Consensus 64 ---~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 64 ---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566677888888999999999999999999999999999999999996 666644 455588899999999999
Q ss_pred HHHHhhCCC
Q 005106 536 QAILTLSPD 544 (714)
Q Consensus 536 ~~al~L~P~ 544 (714)
.++..+-+.
T Consensus 141 ~~~~~~~~~ 149 (166)
T 1a17_A 141 EHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHhcc
Confidence 988776443
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=3.2e-14 Score=152.73 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE------------------CLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~------------------~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+.+..|.++|.++...|++++|+..|++||++.|+.. ++.++|.+|..+|+|++|+.+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~--- 252 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH--- 252 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 44456678888888888888888888888888887532 344455555555555555554
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
++++|+++|.++.+|+++|.++..+
T Consensus 253 -------------------------------------------------------~~~al~~~p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 253 -------------------------------------------------------CNIVLTEEEKNPKALFRRGKAKAEL 277 (338)
T ss_dssp -------------------------------------------------------HHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------HHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455555555567789999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|++++|+..|++|++++|++.+++.+++.+ ....++.+++...|.+++.+.|+..
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp TCHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999999 5556888999999999999998764
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=3.5e-12 Score=132.73 Aligned_cols=161 Identities=11% Similarity=-0.066 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch--------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------ 448 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~------ 448 (714)
...+...+..+...|+|++|+..|.++++..+. ..+.++|.++...|++++|+..++++++..+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345567888899999999999999999987321 235568889999999999999999999865432
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHH---hcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 005106 449 GWMYQERSL----YCEGDKRWEDLDKAT---ALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (714)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAi---~LdP~~~----~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------ 511 (714)
+.+|.+.|. .+++++|+..|++|+ +..|+.. .+|+++|.+|..+|++++|+..|++|+++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456666654 256699999999999 5667643 69999999999999999999999999998653
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC
Q 005106 512 -LECLELRFCFFLALEDYQAA-LCDVQAILTLSP 543 (714)
Q Consensus 512 -~~~~~~R~~~~~~lgd~e~A-l~d~~~al~L~P 543 (714)
..++++.|.+|..+|++++| ...|++|+.+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56788899999999999999 777999998753
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=2.9e-12 Score=136.06 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=187.3
Q ss_pred HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
+-.|.|..++....+ +.. ++........|.|..+|++... . ..+++..+......|.. .+|+..|++.+
T Consensus 24 fy~G~yq~~i~e~~~-~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEK-FSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHT-SSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHTT
T ss_pred HHhhHHHHHHHHHHh-cCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 456889888884432 222 3344566778889999988742 1 22334434444444433 33889999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQAILTLSPD----- 544 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~----- 544 (714)
+..+....++..+|.++...|++++|+..+.++|..+| + .++....+.++..+|+.+.|.+.+++..+.+|+
T Consensus 94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 98877788889999999999999999999999999987 4 566666778999999999999999999999994
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~ee 622 (714)
+. ...+ .+++|+.+......+ ..|...|+++.+..|. .+..+.+ ++.++|++++
T Consensus 174 d~------~l~~-------------Laea~v~l~~g~~~~--q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 174 NE------MILN-------------LAESYIKFATNKETA--TSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HH------HHHH-------------HHHHHHHHHHTCSTT--THHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred hH------HHHH-------------HHHHHHHHHhCCccH--HHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHH
Confidence 31 1122 256677776653222 2268899999888886 4555555 8999999999
Q ss_pred HHHHHHHHHHh----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 623 AMRSLQLARQH----------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al~~~~~Al~l----------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+.+++++++ +|++++++.|...+.+.+|+ +|-+.++|+..++|+..
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 99999988887 59999999999999999998 99999999999999875
No 176
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.43 E-value=6.8e-14 Score=154.82 Aligned_cols=237 Identities=9% Similarity=0.001 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHhc
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSLY 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ay~~rg~~ 458 (714)
.+.++|.+++..|++++|++.|.++ +....+...+..+...|++++|+..+..+++. .+.++.+|.+.|.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCH
Confidence 5556666666666666666666543 23335555666666666666666666555533 22333344443322
Q ss_pred -------------------------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 459 -------------------------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 459 -------------------------~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
+.+++|+..|+++ ..|.++|.++..+|++++|+..|.|| .++.
T Consensus 111 ~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~ 178 (449)
T 1b89_A 111 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----NSTR 178 (449)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----CCch
Confidence 2224444444444 24444555555555555555555554 1344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSV 592 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~ 592 (714)
.|.....++...|+++.|..+..+ +..+|++ ..-...+|.+ .+.+. ++..
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------l~~lv~~Yek---~G~~eEai~l 229 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-------------------------LEELINYYQD---RGYFEELITM 229 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-------------------------HHHHHHHHHH---TTCHHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-------------------------HHHHHHHHHH---CCCHHHHHHH
Confidence 444444444445555555444333 2233332 1111122322 12222 4889
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++++|.++|.+...+..+|.++.+ .++..|+++.|...+++.| .++..+..+..+++.-|+||.|+...-+..
T Consensus 230 Le~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 230 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 999999999999999999999887 7888899999999999999 999999999999999999999987555444
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=9.1e-13 Score=127.15 Aligned_cols=157 Identities=11% Similarity=-0.052 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
++|...++......+..+.++.++|.++..+|++++|+..|++++++ .|. ..++.++|.++..+|++++|+..
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666444444433377889999999999999999999999999994 332 45677899999999999999999
Q ss_pred HHHHHhh---CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 535 VQAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 535 ~~~al~L---~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
|++++++ .|++.. ..+.+++++|
T Consensus 89 ~~~al~~~~~~~~~~~------------------------------------------------------~~~~~~~~lg 114 (203)
T 3gw4_A 89 FLEERELLASLPEDPL------------------------------------------------------AASANAYEVA 114 (203)
T ss_dssp HHHHHHHHHHSCCCHH------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHH------------------------------------------------------HHHHHHHHHH
Confidence 9999998 332200 1134678899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++..+|++++|+..+++|+++.+.. +.++.++|.++..+|++++|+..+++|+++-+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876543 33458999999999999999999999999854443
No 178
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.43 E-value=4.5e-12 Score=111.22 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=95.8
Q ss_pred cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 474 LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 474 LdP~~-~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
++|.. +.+|+.+|.++...|++++|+..|++++..+|+ +..+..++.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence 46666 778888888888888888888888888888885 7777778888888888888888777777766664
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
+.+++++|.++..+|++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3346677888888889999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcC
Q 005106 632 QHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G 652 (714)
+++|++..++.++|.++..+|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 999988888888888887665
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.42 E-value=2.8e-13 Score=132.36 Aligned_cols=164 Identities=8% Similarity=-0.110 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
..+....+-+.....+|+++.|...++...+-.+. ...+..+|..+...|++++|+..|++++++.|++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 78 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--- 78 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---
Confidence 34455667788888899999999999887776665 67788899999999999999999999999999875322110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+......+ ...+++++|.++..+|++++|+..+++|++++|
T Consensus 79 ----------------------------------~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 79 ----------------------------------LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 00011111 157899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
+++.+++++|.+++.+|++++|+..|++|++++|+.. ++.+.+.++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 7777776553
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=3.3e-13 Score=129.56 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-------
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQHAASDHERLVYEGWILYDTS------- 652 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----------eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G------- 652 (714)
+..++++++++|+++++|++.|.+|..+|++ ++|+..|++|++++|+++++++++|.+|+.+|
T Consensus 22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~ 101 (158)
T 1zu2_A 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET 101 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence 7899999999999999999999999999886 59999999999999999999999999999985
Q ss_pred ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 653 ----HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 653 ----~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
++++|+..|++|++|+|+++.| .+++.++
T Consensus 102 ~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~ 134 (158)
T 1zu2_A 102 EAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence 8999999999999999998855 3444443
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=5.4e-13 Score=121.30 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..+...|.+ ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..+.++|.++..+|+
T Consensus 24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444444434 77788889999999999999999999999999999999999999999996 8888999999999999
Q ss_pred HHHHHHHHHHHHhhCCCch
Q 005106 528 YQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~ 546 (714)
+++|+..|+++++++|++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999873
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-12 Score=116.01 Aligned_cols=121 Identities=17% Similarity=0.085 Sum_probs=88.1
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++..+|+.+..++.+|..+...|++++|+..|+++++++|+ ...+.++|.++..+|++++|+..|+++++++|++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 98 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD- 98 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-
Confidence 34566778888888888888888888888888888888886 4556667777777777777777666666666554
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (714)
+.+++++|.++..+|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 99 ---------------------------------------------------------VKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 23456677777777777777777
Q ss_pred HHHHHHhCCCChhHHHHHHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
++++++++|++.+++..++.+..
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777766665543
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=1.9e-13 Score=153.73 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=105.6
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
+.|..|..+|++ ++|+..|++|++++|+++.+|.++|.++.++|++++|+..|++|++++|+ +..++++|.+|..+
T Consensus 11 ~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 445555555444 89999999999999999999999999999999999999999999999996 88889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHH---------
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY--------- 594 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~--------- 594 (714)
|++++|+..|+++++++|++..+. ...+.+ ....+++++| +..++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~------~~l~~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAK------MKYQECNKIVKQKAFERA------------------IAGDEHKRSVVDSL 143 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHH------HHHHHHHHHHHHHHHCCC------------------------CCSTTTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHHHHHHHH------------------hccccccchhHhhh
Confidence 999999999999999999985422 222222 2223444444 44444
Q ss_pred --HHHHhCCCChhHHHHHH
Q 005106 595 --QMLESDAPKGVLYFRQS 611 (714)
Q Consensus 595 --qaL~l~P~~~~~~~~~g 611 (714)
++++++|.....++..+
T Consensus 144 ~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 144 DIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp TTSSCCCCTTCCSCCCGGG
T ss_pred hhhhccccccccccccccc
Confidence 77888888777776654
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.36 E-value=6.3e-13 Score=142.55 Aligned_cols=155 Identities=8% Similarity=-0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
....+++++|..++..|+|++|+..|++||++.+.+.. +...|++.++...+.. ..+-+.|.+|..+|++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~~--~~~~nla~~~~~~g~~-- 246 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVKN--PCHLNIAACLIKLKRY-- 246 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHHT--HHHHHHHHHHHTTTCC--
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHHH--HHHHHHHHHHHHcCCH--
Confidence 34567889999999999999999999999999766542 2234455555444321 1233466666666555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDYQAALCDVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~e~Al~d~~~a 538 (714)
++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|+ ..++.+++.+ ....+..++|...|.++
T Consensus 247 -~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 247 -DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996 6777777766 55677889999999999
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
+.++|++.
T Consensus 326 l~~~p~~~ 333 (338)
T 2if4_A 326 FKGKDEGG 333 (338)
T ss_dssp --------
T ss_pred hCCCCCCC
Confidence 99999874
No 185
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.35 E-value=1.4e-12 Score=144.40 Aligned_cols=238 Identities=13% Similarity=-0.049 Sum_probs=97.1
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHH
Q 005106 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRW 465 (714)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl 465 (714)
.+.....|++++|.+++++. +++.+|..+|.++...|++.+|++.|.++ ++...|++.+. .+++++|+
T Consensus 10 ~~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 34445678899999999996 67789999999999999999999999775 33335544432 34559999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..|.++++..|+ +.....++.+|.++|+++++...++ .|+...|...|..+...|+|++|+..|.++ +++
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~ 151 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF 151 (449)
T ss_dssp ----------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----TCH
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhH
Confidence 999999996555 7888999999999999999887775 477778899999999999999999999987 332
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
..++.+.-.+++++. |+..+++| +++..|-..+.+...+|+++.|..
T Consensus 152 ----------~~LA~~L~~Lg~yq~------------------AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 152 ----------GRLASTLVHLGEYQA------------------AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp ----------HHHHHHHHTTTCHHH------------------HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HHHHHHHHHhccHHH------------------HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHH
Confidence 111222222333333 47788888 588999999999999999999988
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
.... +...|++ +.....++.+.|+++||+..+|+++.++|.-. .|.--|.+++
T Consensus 199 ~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 199 CGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp TTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8775 4466655 44577789999999999999999999998887 8887776654
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=6.3e-12 Score=108.52 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=45.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 45667777777777777777777777777777766664 555555666666666666665555555555544
No 187
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=2e-11 Score=106.07 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.+|..+|.++...|++++|+..|++++..+|+ +..+..+|.++..+|++++|+..++++++++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 44555555555555555555555555555553 444455555555555555555544444444443
No 188
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.34 E-value=1.2e-11 Score=112.06 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34477777788899999999999999999999999999999999999999996 88899999999999999999999999
Q ss_pred HHhhCCCc
Q 005106 538 ILTLSPDY 545 (714)
Q Consensus 538 al~L~P~~ 545 (714)
+++++|+.
T Consensus 103 a~~~~p~~ 110 (137)
T 3q49_B 103 AYSLAKEQ 110 (137)
T ss_dssp HHHHHHHT
T ss_pred HHHHChhH
Confidence 99999984
No 189
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=110.18 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|++..+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555555553 44445555555555555555555555555
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
++|++
T Consensus 113 ~~p~~ 117 (133)
T 2lni_A 113 LDSSC 117 (133)
T ss_dssp HCGGG
T ss_pred hCCCc
Confidence 55544
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.33 E-value=7.5e-12 Score=136.22 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILG----------------FKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~----------------l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+..|.++|.++...|++++|+..|++||+ ++|. ..++.++|.+|..+|++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 6664 677788888888889888888888887777
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
+|++ +.+|+++|.++..+|+++
T Consensus 303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~ 324 (370)
T 1ihg_A 303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD 324 (370)
T ss_dssp CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 7765 456888999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+|+..|++|++++|++.+++..++.++..+|+++++...
T Consensus 325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887653
No 191
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=1.5e-11 Score=127.79 Aligned_cols=157 Identities=10% Similarity=-0.074 Sum_probs=124.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc---h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWMY 452 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~------~~ay 452 (714)
......+...|+|++|+..|+++++..+ . ..+.++|.++...|++++|+..+++++...+.. +.+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3456677888999999999999988632 1 123357888888899999999999999864321 3356
Q ss_pred HHHHhc----CChhHHHHHHHHHHh-------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHH
Q 005106 453 QERSLY----CEGDKRWEDLDKATA-------LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LEC 514 (714)
Q Consensus 453 ~~rg~~----~~~~eAl~d~~kAi~-------LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~ 514 (714)
.+.|.+ +++++|+..|++|++ ..|..+.+|+|+|.+|..+|++++|+..+++||++.+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 666542 466999999999994 44455679999999999999999999999999998541 567
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005106 515 LELRFCFFLALE-DYQAALCDVQAILTLSP 543 (714)
Q Consensus 515 ~~~R~~~~~~lg-d~e~Al~d~~~al~L~P 543 (714)
++++|.++..+| ++++|+..|++|+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888999999999 57999999999998753
No 192
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=2.5e-11 Score=108.74 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.+++++|.++...|++++|+..|+++++.+|+ + ..++.+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------- 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence 35666777777777777777777777777764 3 4566677777777777777777777666666651
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
..+.+++++|.++..+|++++|+..++++++..|
T Consensus 74 ----------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 ----------------------------------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp ----------------------------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 0134456667777777777777777777777777
Q ss_pred CChhHHHHHHHHHHhcCC
Q 005106 636 SDHERLVYEGWILYDTSH 653 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~ 653 (714)
++..+...+..+-.-.++
T Consensus 108 ~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 108 GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TSHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 777666665555444443
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.32 E-value=3e-12 Score=114.66 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred hHHHHHHHHHh---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l---~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
|+..|+++|++ +|.++.+++++|.++..+|++++|+..+++|++++|+++++++++|.+++.+|++++|+..+++++
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHH--HHHHHHHHhhccCCCC
Q 005106 666 QMKRSFE--AFFLKAYALADSSQDS 688 (714)
Q Consensus 666 ~i~~~~~--a~~~~~~~~~~~~~~~ 688 (714)
++.|+.. ..+.++.......+|.
T Consensus 89 ~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 89 AETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999886 5667777766666654
No 194
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.31 E-value=1.8e-11 Score=108.28 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~ 528 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+...+.++..+|++
T Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 44444455556666666666666666666666666666666666666664 55555566666666553
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=6.8e-12 Score=114.71 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
+.++.++|.++...|++++|+..+++++++.+.. ..+...|.++..+|++++|+..|++++++.|+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 4688999999999999999999999999986531 35677899999999999999999999988665310
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
. +..+.+++++|.++..+|++++|+..+++|+
T Consensus 85 -----------------------------------~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 85 -----------------------------------R-------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp -----------------------------------H-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------------------------c-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0 0113567889999999999999999999999
Q ss_pred HhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 632 QHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 632 ~l~P~------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
++.+. .+.++.++|.+++.+|++++|+..+++++++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 98543 3678999999999999999999999999988554
No 196
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.30 E-value=3.1e-11 Score=108.15 Aligned_cols=108 Identities=11% Similarity=-0.059 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
.++.+|..+...|++++|+..|+++++.+|++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------------------------------------- 36 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV----------------------------------------------- 36 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-----------------------------------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-----------------------------------------------
Confidence 356788888899999999998888888888762
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
..+.+++++|.++..+|++++|+..|+++++.+|++ +++++++|.+++.+|++++|+..|++++++.|+
T Consensus 37 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 37 --------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp --------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 112578889999999999999999999999999999 899999999999999999999999999999998
Q ss_pred HH-HHHH
Q 005106 671 FE-AFFL 676 (714)
Q Consensus 671 ~~-a~~~ 676 (714)
.. +...
T Consensus 109 ~~~~~~a 115 (129)
T 2xev_A 109 SDAARVA 115 (129)
T ss_dssp SHHHHHH
T ss_pred ChHHHHH
Confidence 77 4433
No 197
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=2.3e-11 Score=105.73 Aligned_cols=92 Identities=14% Similarity=-0.020 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..+++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++
T Consensus 23 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHHH
Q 005106 669 RSFE-AFFLKAYA 680 (714)
Q Consensus 669 ~~~~-a~~~~~~~ 680 (714)
|+.. +++..|.+
T Consensus 103 ~~~~~~~~~l~~~ 115 (118)
T 1elw_A 103 ANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 9887 76666544
No 198
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=6.7e-11 Score=103.62 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
...++..|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence 4566677778888888888877777776666654
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+++++|.++...|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|++++.+.|+.
T Consensus 43 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 43 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677889999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHhh
Q 005106 672 E-AFFLKAYALA 682 (714)
Q Consensus 672 ~-a~~~~~~~~~ 682 (714)
. +++..|.++.
T Consensus 111 ~~~~~~l~~~~~ 122 (125)
T 1na0_A 111 AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7 8888877653
No 199
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.29 E-value=1.9e-11 Score=105.46 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=86.9
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 005106 509 KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 509 ~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 587 (714)
+|+ +..+..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------------ 39 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------------------------------------------ 39 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------------------------------------------
Confidence 453 5556667777777777777777666666665554
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEES 664 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~-G~~eeAl~~ye~A 664 (714)
+.+++++|.++..+|++++|+..++++++++|+ +.++++++|.++..+ |++++|+..++++
T Consensus 40 ----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 40 ----------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456788999999999999999999999999999 999999999999999 9999999999999
Q ss_pred HhcCCCH
Q 005106 665 IQMKRSF 671 (714)
Q Consensus 665 i~i~~~~ 671 (714)
+...|+.
T Consensus 104 ~~~~p~~ 110 (112)
T 2kck_A 104 KLEHHHH 110 (112)
T ss_dssp GGGCCCC
T ss_pred hhcccCC
Confidence 9998874
No 200
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=111.51 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=103.8
Q ss_pred cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 005106 508 FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (714)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d 586 (714)
.+|. ...+..+|..+...|++++|+..|+++++++|++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------------------- 63 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------------------------------- 63 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------------------------------
Confidence 3454 777888999999999999999999999999998510
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+.+|+++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++
T Consensus 64 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 64 ----------------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1356888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 005106 667 MKRSFE-AFFLKAYA 680 (714)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (714)
++|+.. ++...+-+
T Consensus 128 ~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 128 LEPKNKVFQEALRNI 142 (148)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 999877 66555544
No 201
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.29 E-value=4.3e-12 Score=113.62 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 CEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~L---dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
+++++|+..|++|+++ +|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4449999999999999 7999999999999999999999999999999999996 88899999999999999999999
Q ss_pred HHHHHhhCCCch
Q 005106 535 VQAILTLSPDYR 546 (714)
Q Consensus 535 ~~~al~L~P~~~ 546 (714)
|+++++++|++.
T Consensus 84 ~~~al~~~p~~~ 95 (117)
T 3k9i_A 84 LLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHhCCCcH
Confidence 999999999984
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=1.3e-11 Score=134.33 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
...++..+|..++..|+|++|+..|++||++.+...
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------------------------------- 257 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------------------------- 257 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------
Confidence 456677888888888888888888888887632210
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+..+.+++.+++|.++.+|.++|.++..+|++++|+..+++||+++|+ +.+++.+|.+|..+|++++|+.+|++|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 258 --AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp --HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 011245677788889999999999999999999999999999999996 88889999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
++|++. .+...+..+....++.+++
T Consensus 336 l~P~~~------~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 336 IAPEDK------AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCH------HHHHHHHHHHHHHHHHHHH
Confidence 999983 3445555555555555555
No 203
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.28 E-value=2.9e-11 Score=116.45 Aligned_cols=151 Identities=11% Similarity=-0.078 Sum_probs=93.5
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHh----cCChh
Q 005106 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS------SVTPLGWMYQERSL----YCEGD 462 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~------~~p~~~~ay~~rg~----~~~~~ 462 (714)
..|+|++|++.++..... ....++..+|.++..+|++++|+..+.++++ ..+..+.++.++|. .++++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345555555533222211 1233444455555555555555555555555 22223333333332 13335
Q ss_pred HHHHHHHHHHhc---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHhcCCH
Q 005106 463 KRWEDLDKATAL---DP----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---AL----ECLELRFCFFLALEDY 528 (714)
Q Consensus 463 eAl~d~~kAi~L---dP----~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---~~----~~~~~R~~~~~~lgd~ 528 (714)
+|+..|++|+++ .| ....++.++|.++..+|++++|+..+++++++.+ ++ ..+.++|.++..+|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666666666 22 3356799999999999999999999999998632 22 2346789999999999
Q ss_pred HHHHHHHHHHHhhCCCc
Q 005106 529 QAALCDVQAILTLSPDY 545 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~ 545 (714)
++|+..+++++++....
T Consensus 164 ~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999986544
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=2.8e-11 Score=107.24 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|..+..|+.+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----- 75 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY----- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-----
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-----
Confidence 345678999999999999999999999999999995 88888999999999999999999999999988651100
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
+..+.+++++|.++..+|++++|+..+++++++.
T Consensus 76 ----------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 ----------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0113567889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcC
Q 005106 635 ASDHERLVYEGWILYDTS 652 (714)
Q Consensus 635 P~~~ea~~~~G~~ly~~G 652 (714)
| +.+....++.+.-.++
T Consensus 110 ~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 110 R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 9 5888888887765544
No 205
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=5e-11 Score=129.23 Aligned_cols=218 Identities=13% Similarity=0.018 Sum_probs=160.8
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
...|+.+...|++.+|++.|.++++..++.+.++..++.. .......++| +.++|.+|..+|++++|
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~a----------l~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQETS----------ILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHHHH----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHHHH----------HHHHHHHHHHCCCHHHH
Confidence 4456667777888888888888888777766655555443 4445555544 47889999999999999
Q ss_pred HHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 499 LAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 499 l~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
+..|.+++.+.+. .. ...+.+.++...|++++|+..+++++...+....-.++..+...++.+....+++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 9999988887553 11 1233567777888899999999888887665433334455566666666666666666
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Q 005106 572 DCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------H 638 (714)
Q Consensus 572 ~~~~~l~~~~~~~~d~~al~~~~qaL~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ 638 (714)
+..+.+++.. .|..++++.++|.++..+|++++|...|++|+.+.|.. +
T Consensus 155 ------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 155 ------------------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp ------------------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 5556666655 45567899999999999999999999999999986543 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.+.|.++...|++++|...|.+++..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677788888899999999999999874
No 206
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.21 E-value=3e-11 Score=106.62 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=65.6
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhc-----c---CCCC--CC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Y-----t---g~l~--~i 250 (714)
|+|+- +|++|.+||.| |++|+||++||.+ ++.|+....|.|+ +|++.+|+.+++|+| + +.++ ++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 66665 78999999999 9999999999987 7888888999999 599999999999999 5 5554 37
Q ss_pred CHHHHHHHHHHHhhhCh
Q 005106 251 TPNLLLEILIFANKFCC 267 (714)
Q Consensus 251 ~~~~v~~lL~aAd~~~v 267 (714)
+++++++|+.||++|++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 78999999999999975
No 207
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.20 E-value=1.5e-10 Score=105.65 Aligned_cols=140 Identities=15% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--h------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--I------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay 452 (714)
....++..+|.++...|++++|+..|++|+++.+ . .++..+|.++..+|++++|+..+.++++..+..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 4567789999999999999999999999998822 1 36778899999999999998888887765432110
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHhc
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLAL 525 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---~----~~~~~~R~~~~~~l 525 (714)
.+....++.++|.++..+|++++|+..+++++++.+ + ...+.++|.++..+
T Consensus 85 ----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 85 ----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 011246788999999999999999999999998732 1 34566788999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 005106 526 EDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~ 544 (714)
|++++|+..+++++++...
T Consensus 143 g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.20 E-value=7.8e-11 Score=104.56 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
++|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99975
No 209
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.19 E-value=1.1e-10 Score=103.24 Aligned_cols=106 Identities=10% Similarity=0.023 Sum_probs=91.3
Q ss_pred Hhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHH
Q 005106 575 LQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGW 646 (714)
Q Consensus 575 ~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~ 646 (714)
..++......+++. |+..+++++..+|.++.+++++|.++..+|++++|+..+++++++.|++ +.+++++|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33333333334444 5889999999999999999999999999999999999999999999988 999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005106 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (714)
Q Consensus 647 ~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~ 680 (714)
+++.+|++++|+..|++++++.|+.......+.+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999987766655544
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.15 E-value=1.3e-10 Score=103.14 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++..++++++.+|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHH
Q 005106 669 RSFE 672 (714)
Q Consensus 669 ~~~~ 672 (714)
|+..
T Consensus 84 ~~~~ 87 (115)
T 2kat_A 84 QSRG 87 (115)
T ss_dssp HHHT
T ss_pred cccc
Confidence 8653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.14 E-value=1.2e-09 Score=118.16 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 516 ELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 516 ~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+.||.-+...++ ..+|+..|++|++++|+|..++...+.... +....+.+.... ...+.. ++.
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~---~~~~~~~~~~~~-~~~l~~---------a~~- 265 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI---VRHSQHPLDEKQ-LAALNT---------EID- 265 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHHHHSCCCHHH-HHHHHH---------HHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHhccCCCchhh-HHHHHH---------HHH-
Confidence 456665554443 478888888888888888554332221111 000000011000 000000 011
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
--.++..+|.++.+|.-.|..+...|++++|+..+++|++++|+ +.++..+|+++...|++++|++.|++|+.++|+.+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11345788999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC
Q 005106 673 AFFLKAYALADSSQ 686 (714)
Q Consensus 673 a~~~~~~~~~~~~~ 686 (714)
.|++-.-..=.|+|
T Consensus 345 t~~~~~~l~F~sn~ 358 (372)
T 3ly7_A 345 TLYWIENGIFQTSV 358 (372)
T ss_dssp HHHHHHHSSSCCCH
T ss_pred hHHHHhCceeecch
Confidence 87765554445554
No 212
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.1e-10 Score=120.64 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL------------------ECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~------------------~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.+....|..+...|+|++|+..|.+++...|+. .++..+|.+|..+|++++|+..|++++++
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566777777788888888888888776641 23567899999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC------CCChhHHHHHHHHHH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------APKGVLYFRQSLLLL 615 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~------P~~~~~~~~~g~~L~ 615 (714)
.+..........+....+.+....+.+++| +..+.+++... +..+.++.++|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 887644444344455555555455555555 55666666654 344678999999999
Q ss_pred HcCChHHHHHHHHHHHHh------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 616 RLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
.+|++++|+..+++++.. .|..++++.++|.++..+|++++|...|++|+.+.+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999987 555678999999999999999999999999998753
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.06 E-value=2.5e-10 Score=99.74 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=68.0
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.+|+++.+|+++|.++..+|++++|+..+++|++++|+++.+++++|.++..+|++++|+..|++|+++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997654
No 214
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=9.1e-11 Score=101.98 Aligned_cols=79 Identities=6% Similarity=-0.011 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFL 676 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------~-a~~~ 676 (714)
+..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|+++++++|++ . +++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666653 2 5555
Q ss_pred HHHHhh
Q 005106 677 KAYALA 682 (714)
Q Consensus 677 ~~~~~~ 682 (714)
+|.++.
T Consensus 84 ~~~~~~ 89 (111)
T 2l6j_A 84 LELAQG 89 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 215
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=7.2e-10 Score=96.21 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=86.6
Q ss_pred HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 005106 570 IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV 642 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 642 (714)
.+++|..++......+++. |+..++++++++|.++.+|+++|.++..+|++++|+..+++|++++|++ +.+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4667788888888888888 8999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 005106 643 YEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~ 663 (714)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999998877654
No 216
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.05 E-value=5.5e-10 Score=105.31 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=83.0
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC----------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~---------------- 246 (714)
|+|+. +|+.|.+||.+ |..|++|++||.+.- ...|.|+ +|+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77777 88999999998 899999999998631 4579999 599999999999999876
Q ss_pred ----------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 247 ----------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+. ++.+++.+|+.||+++++..|.+.|+++++.++.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 66 8899999999999999999999999999999986
No 217
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.03 E-value=8.9e-10 Score=92.24 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++++|+.. ++++.|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999877 8998888
Q ss_pred Hhh
Q 005106 680 ALA 682 (714)
Q Consensus 680 ~~~ 682 (714)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=5.7e-10 Score=97.43 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=66.6
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.+|+++.+|+++|.++..+|++++|+..|+++++++|+ +.++.++|.+|..+|++++|+..|+++++++|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 48999999999999999999999999999999999996 8889999999999999999999999999998875
No 219
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=5.7e-09 Score=110.72 Aligned_cols=56 Identities=13% Similarity=-0.116 Sum_probs=43.5
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
+|+++++..|+..+-..+|+ +|.+.++++..++|+++....+.. +...||++..+|
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~----k~~~Fd~~~~ky 306 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE----IDAKFDELVRKY 306 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHh
Confidence 58889999999888888997 799999999999999998765532 234455555544
No 220
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.93 E-value=2.6e-10 Score=109.90 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=58.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC----------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~---------------- 246 (714)
|+|+. +|+.|.+||.+ |..|++|++||.++. ....|.|+ +|+..+|+.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 67765 89999999998 899999999998753 23478888 699999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC--CHhhHHHHHHHh
Q 005106 247 -----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYA 295 (714)
Q Consensus 247 -----------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~l~l~~~A 295 (714)
+. ++.+++.+|+.||++|++..|.+.|+++++.++. ++++...++...
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 34 7788999999999999999999999999999985 456655544443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.90 E-value=2.1e-08 Score=108.42 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~---g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..++.+|..+..+ ..+.+|+.+|++||+++|.+ ++.+++.++... ....+..+......
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~~~~l-- 260 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQLAAL-- 260 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhhHHHH--
Confidence 44456667766654 45789999999999997765 455556655511 00011111111111
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
..|+.. ..++.++|.++.+|.-+|.++...|++++|+..++||++++|+...+..+|.++...|++++|+..|++
T Consensus 261 ----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 261 ----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp ----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233332 246789999999999999999999999999999999999999988788899999999999999999999
Q ss_pred HHhhCCCch
Q 005106 538 ILTLSPDYR 546 (714)
Q Consensus 538 al~L~P~~~ 546 (714)
|+.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999874
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=1.4e-09 Score=93.43 Aligned_cols=87 Identities=7% Similarity=-0.050 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~-ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
|..+...|++ ++|+..|+++++++|+++. +|.++|.++..+|++++|+..|+++++++|+ +..+.+ +
T Consensus 7 a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDI---ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCH---HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4555556555 8888888999999999999 9999999999999999999999999999996 554432 6
Q ss_pred CHHHHHHHHHHHHhhCCCch
Q 005106 527 DYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~ 546 (714)
.+.+|+..|++++.++|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 78889999999999998863
No 223
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.88 E-value=1.7e-08 Score=84.32 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
.+++++|.++.++|++++|+..++++++++|+++.++.++|.++..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 345667777777777777777777777777777777777777776654
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.88 E-value=4.2e-08 Score=102.41 Aligned_cols=83 Identities=5% Similarity=-0.013 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-CCHHHHHH
Q 005106 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT-SHCEEGLR 659 (714)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~l-----g~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~-G~~eeAl~ 659 (714)
+.+.++|||++||+ ++.+|..+|.++.++ |.++.|.+.|++|++++|+. .+.++..|..+... |++++|.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 35589999999999 778999999999997 99999999999999999975 99999999999885 99999999
Q ss_pred HHHHHHhcCCCH
Q 005106 660 KAEESIQMKRSF 671 (714)
Q Consensus 660 ~ye~Ai~i~~~~ 671 (714)
.+++|+++.|..
T Consensus 262 ~L~kAL~a~p~~ 273 (301)
T 3u64_A 262 ALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCGGG
T ss_pred HHHHHHcCCCCC
Confidence 999999998773
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=1.2e-08 Score=87.39 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
.+++|.++...|++++|+..++++++++|+++. +++++|.+++.+|++++|+..|+++++++|++. +++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467888888889999999999999999999888 999999999999999999999999999988877 553
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.78 E-value=4e-07 Score=106.67 Aligned_cols=225 Identities=8% Similarity=-0.066 Sum_probs=159.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005106 435 YEKLNSVISSVTPLGWMYQERSLY----CEGDKRW-EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF- 508 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl-~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l- 508 (714)
...|++++...|..+..|..-+.+ +..++|. ..|++|+...|.....|...+......|+++.|...|++++..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455667777777777666665443 3346786 8899999999999888999999999999999999999999974
Q ss_pred ----------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 509 ----------KLA------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 509 ----------~P~------------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
.|. ...|...+.+....|+.+.|..-|.+|++..|... .........++...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~- 482 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHI- 482 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTT-
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHh-
Confidence 242 12344445566677889999999999998733211 00111111111111
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLV 642 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~ 642 (714)
.++.+ |..+|+++|+..|.++..|...+..+...|+.+.|...|++|+...|+ ....+.
T Consensus 483 -----------------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 483 -----------------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp -----------------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12222 477899999999999999999999999999999999999999999984 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhh
Q 005106 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALA 682 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~--a~~~~~~~~~ 682 (714)
.....-...|+.+.+...++|+....|+.. ..|..=|.+.
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence 333334466999999999999999998855 5555444444
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.74 E-value=5.6e-07 Score=105.38 Aligned_cols=228 Identities=9% Similarity=-0.033 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL-AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl-~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
....|++|+...|.++..|+..|..+...|+.++|+ ..|++|+...|. ...|...+.+....|++++|...|++++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999998 999999999996 555666788899999999999999999985
Q ss_pred C-----------CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHh-CCCChhHHH
Q 005106 542 S-----------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLES-DAPKGVLYF 608 (714)
Q Consensus 542 ~-----------P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l-~P~~~~~~~ 608 (714)
- |.+.. .+.. -..+.+..|+....-..+.++.+ |..+|.+|+.. .+.....|.
T Consensus 408 l~~~~~~~~~~~p~~~~------------~~~~--~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNES------------AINQ--LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHSTTCHH------------HHHH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHhhhhhhccCcchh------------hhhh--hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 43200 0000 00011222333333222233333 57799999998 556678888
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHhhcc
Q 005106 609 RQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS---FEAFFLKAYALADS 684 (714)
Q Consensus 609 ~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~---~~a~~~~~~~~~~~ 684 (714)
..|.+..+.|. .+.|...|+++++..|+++..+...+..+...|+.+.|-+.|++|+...|+ ....+.+-+.+.-.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88887777765 899999999999999999998878888888999999999999999999884 44666666666666
Q ss_pred CCCCCchhhHHHHHHHhhcCCCC
Q 005106 685 SQDSSCSSTVVSLLEDALKCPSD 707 (714)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~ 707 (714)
-=|.++...|.+-+-+ .||.+
T Consensus 554 ~G~~~~~~~v~~R~~~--~~P~~ 574 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFE--KFPEV 574 (679)
T ss_dssp TCCSHHHHHHHHHHHH--HSTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCC
Confidence 6566655555444433 36765
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=2.3e-07 Score=86.08 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP 476 (714)
+++++|+.+|++|.+.++..+. +|.+|...+..++|+++ |++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~------------------------------~~~Aa~~-- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQY------------------------------LSKACEL-- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHH------------------------------HHHHHHT--
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHH------------------------------HHHHHcC--
Confidence 5788999999999999888777 88777766666655555 4555554
Q ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 005106 477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~ 544 (714)
.++.+++++|.+|.. .+++++|+..|++|.+. -++.+.+++|.+|.. .+|+++|+..|++|.+....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 567788888888888 78888888888888875 357777888888888 88888888888888887543
No 229
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.63 E-value=2.1e-07 Score=105.03 Aligned_cols=128 Identities=9% Similarity=-0.029 Sum_probs=101.5
Q ss_pred HHHhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 392 VRLLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 392 ~~~~~g~y~eA~~~f~~AL~~-------~~~---~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
.+..+|+|++|+..|+++|++ +|. .++.++|.+|..+|++++|...+.+++++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------------- 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY---------------- 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------------
Confidence 455789999999999999987 233 357789999999999999999987776653
Q ss_pred hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-HH---HHHHHHHHHHhcCCHHHH
Q 005106 462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-LE---CLELRFCFFLALEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~-LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~~---~~~~R~~~~~~lgd~e~A 531 (714)
.+.+. -.|+-+..|+|+|.+|..+|++++|+..|+||+++ -|+ |. ...+++.++.++|.+++|
T Consensus 382 -------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 382 -------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp -------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 13444568899999999999999999999999986 454 43 345677899999999999
Q ss_pred HHHHHHHHhhC
Q 005106 532 LCDVQAILTLS 542 (714)
Q Consensus 532 l~d~~~al~L~ 542 (714)
...|+++.+-.
T Consensus 455 e~~~~~~~~~~ 465 (490)
T 3n71_A 455 EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=1.7e-07 Score=81.70 Aligned_cols=71 Identities=11% Similarity=-0.003 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 600 DAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|.+++.++.+|.+|...+. .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 79999999999999988777 689999999999999999999999999999999999999999999999987
No 231
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=3.3e-08 Score=88.34 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred hhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHHHhccccccchhhhccchhhhHHHHH
Q 005106 280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLL 351 (714)
Q Consensus 280 ~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l 351 (714)
+.+ +++||+.++.+|..|+++.|.+.|.+++.+||.. .|+.+++.++++++ +..|..++.+++
T Consensus 6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av~ 76 (105)
T 2eqx_A 6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAIE 76 (105)
T ss_dssp CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHHH
Confidence 345 4799999999999999999999999999888865 67888888899885 567889999999
Q ss_pred HHhhhcCCCCchhHHHHHHHH
Q 005106 352 SEVAMNLDPRSDKTVCFLERL 372 (714)
Q Consensus 352 ~~V~~d~~~rs~~~~~LLe~L 372 (714)
+||.+|...|..++.+||++.
T Consensus 77 ~Wv~~d~~~R~~~~~~Ll~~V 97 (105)
T 2eqx_A 77 AWINFNKEEREAFAESLRTSL 97 (105)
T ss_dssp HHHHTTHHHHHHHHHHHHHHC
T ss_pred HHHHcCHHHHHHHHHHHHHHH
Confidence 999999887888999999883
No 232
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=5.8e-07 Score=83.32 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+|+++|+..|+++.+..+...+ ++.+.......++ |+..|+++.+. +++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----------lg~~y~~g~~~~~------------------A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----------LSLVSNSQINKQK------------------LFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----------HHHHTCTTSCHHH------------------HHHHHHHHHHT--TCHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----------HHHHHHcCCCHHH------------------HHHHHHHHHcC--CCHH
Confidence 4678888888888887644311 2212111122222 47778888876 7899
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 606 LYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 606 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
+++++|.++.. .+++++|+..|++|.+. .++++++++|.++.. .+++++|+..|++|.+.......+
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 133 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999 89999999999999987 689999999999999 999999999999999986544333
No 233
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.49 E-value=4.1e-07 Score=102.63 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCchhhhh
Q 005106 485 RASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILTL-----SPDYRMFEG 550 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~L-----~P~~~~~~~ 550 (714)
.+..+..+|+|++|+..++++|++ -|+ + ..+.++|.+|..+|+|++|+..|++++++ .|++
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----- 389 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----- 389 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC-----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 444677899999999999999986 232 3 45677899999999999999999999885 2222
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
|.-+..++|+|.++..+|++++|+..|++|
T Consensus 390 --------------------------------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 390 --------------------------------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333456889999999999999999999999
Q ss_pred HHh-----CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 631 RQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 631 l~l-----~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+++ -|++ ++.+.+++.++..+|.+++|...|.+|.
T Consensus 420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 975 3454 5666789999999999999999999985
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=5.6e-07 Score=85.48 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
..|+..++.+|.+.++.|+.|.+|.+.+ ..++|+..++..++.+ | ++.+.+|++|..+|++|+|++|....++++
T Consensus 19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3678888999999999999999999999 5559999999999999 8 679999999999999999999999999999
Q ss_pred hcCCCHH-HHHHHHH
Q 005106 666 QMKRSFE-AFFLKAY 679 (714)
Q Consensus 666 ~i~~~~~-a~~~~~~ 679 (714)
+++|++. |-.||-.
T Consensus 99 ~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 99 QTEPQNNQAKELERL 113 (152)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHH
Confidence 9999987 8777654
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.42 E-value=1e-06 Score=77.72 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=70.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF 674 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~ 674 (714)
++.-++.+|..+...|+++.|+.+|+.|++.. +..++.+.++|.+++.+|++++|+..+++|++++|+.. +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678999999999999999999999999974 45688999999999999999999999999999999998 76
Q ss_pred HHHHHH
Q 005106 675 FLKAYA 680 (714)
Q Consensus 675 ~~~~~~ 680 (714)
+++++.
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 777643
No 236
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.41 E-value=7.2e-07 Score=78.81 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=69.9
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC--------------C
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~--------------l 247 (714)
-|+|+- +|+.|.++|.+ |..|.+++.||.+++ |.....|.|+ +|+..+++.+++|+|... .
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 377777 89999999997 899999999999877 6666789999 599999999999999743 2
Q ss_pred CCCCHHHHHHHHHHHhhhCh
Q 005106 248 NGVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 248 ~~i~~~~v~~lL~aAd~~~v 267 (714)
. ++.+.+.+|+.||+++++
T Consensus 81 ~-vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CCHHHHHHHHHHHHHHCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 778999999999999875
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.40 E-value=7.3e-06 Score=85.63 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh-cCCHHHH
Q 005106 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTK-----QNVEAALAEINRILGFKLA--LECLELRFCFFLA-LEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~--~~~ay~~rg~~l~~l-----~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~-lgd~e~A 531 (714)
.+|...+++|+++||+ +..+|..+|.+|... |+.+.|...|+|||+++|+ .+.++..|..+.. +||+++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 7888999999999999 566999999999996 9999999999999999994 7878888887777 5999999
Q ss_pred HHHHHHHHhhCCCc
Q 005106 532 LCDVQAILTLSPDY 545 (714)
Q Consensus 532 l~d~~~al~L~P~~ 545 (714)
.+.+++|++.+|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999999884
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.40 E-value=0.00019 Score=80.70 Aligned_cols=344 Identities=5% Similarity=-0.114 Sum_probs=194.1
Q ss_pred ccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHH-hh-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c
Q 005106 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE-SA-ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H 414 (714)
Q Consensus 340 v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~-~a-~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~ 414 (714)
+.+.+-++..+++|.-. ...+.+..++++++. +| .+-|.....+.... ....+.....|+.|+.. + +
T Consensus 11 i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-----~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-----SQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp -CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-----C----CTHHHHHHHHHHSTTCT
T ss_pred hHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHcCCCc
Confidence 67888999999998843 345677789998765 44 22333333332221 11235566788998875 2 2
Q ss_pred hhhHhhHHHHHH------HhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHh----c-------------CChhHHHHHHH
Q 005106 415 IYSIAGLARLGY------IKGHKLWAYEKLNSVISSVTPL--GWMYQERSL----Y-------------CEGDKRWEDLD 469 (714)
Q Consensus 415 ~~a~~~lg~~~~------~~G~~~~A~~~~~~aI~~~p~~--~~ay~~rg~----~-------------~~~~eAl~d~~ 469 (714)
...-....-+.+ .+|+.+.+.+.|.+||.. |.. ...|..-.. + ..+..|...|+
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 222233333333 346788899999999994 431 111111000 0 01123344445
Q ss_pred HHHhcCCC-ChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 470 KATALDPT-LSYPYMYRASSLMTKQN---------VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 470 kAi~LdP~-~~~ay~~rg~~l~~l~r---------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+...-|. ....|... +-.+.+. .+.....|+++|...|. +..|..-+..+...|+.++|..-|++|
T Consensus 162 ~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44443333 22234332 2222222 23467789999988885 777777777778889999999999999
Q ss_pred HhhCCCchhhhhhHHHH----HHHHHHHHhhh-----------hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC
Q 005106 539 LTLSPDYRMFEGRVAAS----QLHMLVREHID-----------NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP 602 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~----~~~~~l~~~~~-----------~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~ 602 (714)
+.. |........-+.. ...+.+..... .......|.+......+.++.. |-.+|.+| ...+.
T Consensus 240 i~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~ 317 (493)
T 2uy1_A 240 IEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV 317 (493)
T ss_dssp HHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred HhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence 999 8874321110000 00011111100 0001122333333222223333 56688999 33333
Q ss_pred ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 005106 603 KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (714)
....|...+.+....| .++.|...++++++.-|++++.+...+..+...|+.+.|-..|+++.. ...++.+-..+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5567777777777777 599999999999999999998777777777888999999999999832 23444444444
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 005106 682 ADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.-+.=|. .++-.+++.+++
T Consensus 394 E~~~G~~---~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSM---ELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCH---HHHHHHHHHHHH
T ss_pred HHHCCCH---HHHHHHHHHHHH
Confidence 4333232 334445555554
No 239
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.32 E-value=7.5e-07 Score=78.25 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=64.1
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------CCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~-----------l~~ 249 (714)
|+|+- +|+.|.++|.+ |..|.+++.||.+ ++.|+....|.|+ +|+..+++.+++|+|... ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 66666 89999999997 8999999999985 3467777889999 599999999999998753 23
Q ss_pred CCHHHHHHHHHHHhhhCh
Q 005106 250 VTPNLLLEILIFANKFCC 267 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v 267 (714)
++.+.+.+|+.||+++++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 778899999999999875
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.32 E-value=2.2e-06 Score=74.48 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 475 DPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+|+++..+..+|.+++..+. .++|...+++||+++|+ +.++..+|..+...|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976665 79999999999999996 8888889999999999999999999999999983
No 241
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=4.7e-06 Score=79.11 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+...|.+++..+|...++.++.|.++...+ .+++||..++.+++.+ | + .++++++|..+.++|+|++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45667789999999999999999999999999 6669999999999998 8 3 799999999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
+++++++|++ ..+..+...++...
T Consensus 95 ~~lL~ieP~n------~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 95 RGLLQTEPQN------NQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHHHHH
Confidence 9999999999 34555555554443
No 242
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.30 E-value=4.1e-06 Score=81.18 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=79.2
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS----------- 246 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~----------- 246 (714)
-|+|+- +|+.|.+++.+ |..|..++.|+...-. +.....|.|+ +|+..+|+.|++|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 577766 78999999998 7889999999975332 2334789998 599999999999998754
Q ss_pred --------------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 247 --------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 247 --------------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+. ++.+.+.+|+.||++|++..|.+.|++.++.++.
T Consensus 85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 23 6678899999999999999999999999998875
No 243
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.16 E-value=9.2e-06 Score=72.65 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~ 256 (714)
=|+|.|||+.|...+..|.... .+|.+||.++.. .....++-|. -+|..|+.+|+|+.||++. ++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 3889999999999999998775 478999987521 1234567775 8999999999999999997 6543 357
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHh
Q 005106 257 EILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 257 ~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
.++.-|++|+++.|++.|.+.+..
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999988753
No 244
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.15 E-value=0.00011 Score=82.74 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-HHHHHHHHHHHHhc---CCCcHHHHHHHHhcCC--------hhH
Q 005106 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-KLWAYEKLNSVISS---VTPLGWMYQERSLYCE--------GDK 463 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~-~~~A~~~~~~aI~~---~p~~~~ay~~rg~~~~--------~~e 463 (714)
|+++.|...|++|+.. .....|..........|+ .+.....|++|+.. +++.+..|..-..+.. .+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 6777777777777765 223333332222222232 22234445555542 4555555544432211 134
Q ss_pred HHHHHHHHHhc
Q 005106 464 RWEDLDKATAL 474 (714)
Q Consensus 464 Al~d~~kAi~L 474 (714)
+...|++||..
T Consensus 108 vR~iy~rAL~~ 118 (493)
T 2uy1_A 108 IRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhC
Confidence 45556666664
No 245
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.07 E-value=5.6e-06 Score=91.93 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+..++|+|.++..+|++++|+..+++|+++ .|+-+..++|+|.++..+|+++||+..|+||++|
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 355788999999999999999999999977 4566778999999999999999999999999987
No 246
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.98 E-value=4.1e-05 Score=67.19 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
...+.+|..++..|+|..|+.+|++|++.. ....+..+|.+++++|+++.|+..+++++.+.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345789999999999999999999999862 34557789999999999999999988888888888888777
Q ss_pred HHhc
Q 005106 455 RSLY 458 (714)
Q Consensus 455 rg~~ 458 (714)
++.+
T Consensus 86 ~~~~ 89 (104)
T 2v5f_A 86 LKYF 89 (104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 247
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.98 E-value=1.3e-05 Score=88.99 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=71.0
Q ss_pred cCChhHHHHHHHHHHh-----cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATA-----LDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFC 520 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~-----LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~ 520 (714)
++++++|+..|++|++ +.|++ +..+.|+|.+|..+|+|++|+..++|+|++ -|+ + ..++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3445777777777766 34554 567899999999999999999999999986 233 3 34678999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----hCCCch
Q 005106 521 FFLALEDYQAALCDVQAILT-----LSPDYR 546 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~-----L~P~~~ 546 (714)
+|..+|++++|+..|++|++ +.|+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999999999999999998 456663
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.85 E-value=6.7e-05 Score=83.09 Aligned_cols=92 Identities=8% Similarity=-0.038 Sum_probs=72.8
Q ss_pred HhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-------~~~---~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~e 463 (714)
..+|+|++|+..|++++++ +|. .++.++|.+|..+|++++|+..+.++++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~------------------ 359 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY------------------ 359 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH------------------
Confidence 3568999999999999976 232 356789999999999999999887766653
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 464 RWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 464 Al~d~~kAi-~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.+.+ .-.|+-+..|+|+|.+|..+|++++|+..|+||+++
T Consensus 360 -----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 360 -----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp -----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222 223444567899999999999999999999999975
No 249
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.82 E-value=3.5e-05 Score=69.50 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.8
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------CC
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~-----------l~ 248 (714)
-|+|+- +|..|.++|. .|..|..++.|+.+ .+.|+....|.|+ +|+..+++.|++|++... ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 477774 8999999999 57899999999985 3456666789999 599999999999998643 23
Q ss_pred CCCHHHHHHHHHHHhhhCh
Q 005106 249 GVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 249 ~i~~~~v~~lL~aAd~~~v 267 (714)
++.+.+.+|+.||++|+|
T Consensus 95 -vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 -IAPEIALELLMAANFLDC 112 (112)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred -cCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.72 E-value=9.7e-05 Score=81.79 Aligned_cols=68 Identities=9% Similarity=-0.114 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCC
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILT-----LSPD 544 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~-----L~P~ 544 (714)
+..+.++|.+|..+|++++|+..++|+|++ -|+ | ..++++|.+|..+|++++|+..|++|++ +.|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999976 233 4 3457799999999999999999999998 5677
Q ss_pred ch
Q 005106 545 YR 546 (714)
Q Consensus 545 ~~ 546 (714)
++
T Consensus 409 Hp 410 (429)
T 3qwp_A 409 HS 410 (429)
T ss_dssp SH
T ss_pred Ch
Confidence 64
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.68 E-value=0.00012 Score=67.23 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee---Al~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
-|+.++..++.+.++.|+.|.+|.+-+.+.+ ++..++..++-+ | ..-+.+|++|...|++|+|++|....+..++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5778888899999999999999999998888 999999999988 5 6889999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 005106 667 MKRSFE-AFFLKAYA 680 (714)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (714)
++|++. |.-||...
T Consensus 103 ~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 103 TEPQNNQAKELERLI 117 (126)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHH
Confidence 999987 88887654
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.43 E-value=0.0014 Score=60.05 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA---ALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~e---Al~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+-..|.++...++....+-++.|.++...++..+ +|..+...+.-+ | . -++++.+|..+.++|+|++|++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445567888888899999999999999999998887 999999999877 6 2 588899999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
+.+|+.+|++ ..|..+...+...
T Consensus 98 ~~lL~~eP~n------~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 98 RGLLQTEPQN------NQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999 3455555555443
No 253
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.19 E-value=0.00087 Score=66.20 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=76.0
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC--C--cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF--M--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~--~--Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
|+|.|||..|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.||+|+.+|++. ++.+ ....
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 789999999999999998664 38899998642 1 1123567675 7899999999999999998 6543 3467
Q ss_pred HHHHHhhhChhhHHHHHHHHHHhh
Q 005106 258 ILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 258 lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
++.-|++|+|+.|++.|.+.+...
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999999999988643
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.60 E-value=0.022 Score=53.08 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
+-++...|+.|.+|.+-+..+ +++..++..++-.| +.-+-+|+++..+|++|+|++|...-+..++++|++. |--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 678999999999999977665 79999999999998 5789999999999999999999999999999999987 777
Q ss_pred HHHHH
Q 005106 676 LKAYA 680 (714)
Q Consensus 676 ~~~~~ 680 (714)
||...
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.58 E-value=0.22 Score=55.85 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=96.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHh--hCCCchhhhhhH
Q 005106 486 ASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLAL---------EDYQAALCDVQAILT--LSPDYRMFEGRV 552 (714)
Q Consensus 486 g~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~l---------gd~e~Al~d~~~al~--L~P~~~~~~~~~ 552 (714)
=..+.+.|+.++|+..|++..+ +.|+...|...-.++... |+.++|.+-|+...+ +.|+-..|..-.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3455566666666666666654 345544444333333322 235566666665544 335432211111
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.++ ....++++ |+.++++|.+.. +-+...|+..=..+.+.|+.++|++.++...
T Consensus 113 ~~~-------~~~g~~~~------------------A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 113 RLA-------VAKDDPEM------------------AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHH-------HHHTCHHH------------------HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-------HhcCCHHH------------------HHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 11122222 255566655542 2245666667777888999999999999877
Q ss_pred Hh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHH
Q 005106 632 QH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEAF 674 (714)
Q Consensus 632 ~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~~a~ 674 (714)
+. .|+ ...+..+=.++.+.|+.++|...+++--+ ++|+-..|
T Consensus 168 ~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 168 ESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred hcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 64 444 55777777788999999999999998665 57877655
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.47 E-value=0.14 Score=57.45 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=110.8
Q ss_pred HHHHhccchHHHHHHHHHHHhcc--c-hhhHhhHHHHHHHh---------CCHHHHHHHHHHHHhcC-CCcHHHHHHH--
Q 005106 391 CVRLLRKEYDEAEHLFEAAVNAG--H-IYSIAGLARLGYIK---------GHKLWAYEKLNSVISSV-TPLGWMYQER-- 455 (714)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~--~-~~a~~~lg~~~~~~---------G~~~~A~~~~~~aI~~~-p~~~~ay~~r-- 455 (714)
..+...|++++|.+.|++..+.+ | ...|.-+-.++... |+.+.|.+.|++..... +++...|...
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34467899999999999987764 2 22233232233322 33678888888777652 1233333222
Q ss_pred --HhcCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 005106 456 --SLYCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 456 --g~~~~~~eAl~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e 529 (714)
+..++.++|+..|++..+. .| +...|+.+-..|.+.|+.++|...|++..+ +.|+...|...-.+|.+.|+.+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 3345559999999877664 45 467899999999999999999999999887 4678777777888899999999
Q ss_pred HHHHHHHHHHh--hCCCch
Q 005106 530 AALCDVQAILT--LSPDYR 546 (714)
Q Consensus 530 ~Al~d~~~al~--L~P~~~ 546 (714)
+|.+.+++.-+ ..|+-.
T Consensus 193 ~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHHHHHhCCCcCHH
Confidence 99999998766 557653
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.22 E-value=1.9 Score=49.67 Aligned_cols=283 Identities=10% Similarity=-0.039 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~e 463 (714)
...+.-+...+..|++..+...-. .+.-.|...|...-.+...++.. ....+...|..+|+.+.+-.-|..+ .+
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~-~l~~~pL~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~---l~ 80 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMP-GLKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRF---VN 80 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSG-GGTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-hhcCCCcHHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHH---HH
Confidence 344555566667777766654322 22223443333322223322321 2336677888899888776666544 22
Q ss_pred HHH---HHHHHHh---cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHH
Q 005106 464 RWE---DLDKATA---LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELR 518 (714)
Q Consensus 464 Al~---d~~kAi~---LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~---P~~----------------~~~~~R 518 (714)
++. +....++ -.|.....-.+.+.++...|+-.+|.+...++.--- |+. +.+..|
T Consensus 81 ~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 221 2222222 247888888899999999999999988888877542 221 112223
Q ss_pred HHHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhhh------H-HHHHHHHHHHHhhhhhhHHHH-----
Q 005106 519 FCFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEGR------V-AASQLHMLVREHIDNWTIADC----- 573 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~-------------al~L~P~~~~~~~~------~-~a~~~~~~l~~~~~~~~~A~~----- 573 (714)
.......|+...|...... ++.-+|........ . ......+..+...++.+.|..
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 3445556666555443322 33344543221100 0 000001111111222222211
Q ss_pred --------------HHhhhhcccccc-ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 574 --------------WLQLYDRWSSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 574 --------------~~~l~~~~~~~~-d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
|..+.-.....+ +.++...++++....+.+....+..+.+| +.|+++.|...+++.-.-.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccH
Confidence 111111212223 44466677777765555544445555554 67999999999987666555678
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
.+.|.+|-++..+|+-++|-..|+++.. .++|=.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~~fYg~ 354 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPM 354 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCChHHH
Confidence 8899999999999999999999999987 5677443
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.19 E-value=0.022 Score=52.49 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
--++.+.|+.|.+|.+-+..+ .++..++..++.+| ..-+-+++++...|++|+|++|...-++.++++|++. |--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 346789999999999977663 69999999999999 4689999999999999999999999999999999998 777
Q ss_pred HHHH
Q 005106 676 LKAY 679 (714)
Q Consensus 676 ~~~~ 679 (714)
||..
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.91 E-value=0.16 Score=47.22 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVE---AALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~---eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
++-.+..-++.|-++...++.+ ++|..+...+.-.|. -++++.++..+.++|+|++|.+..+..|+.+|+|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---- 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---- 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC----
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----
Confidence 4667889999999999888755 799999999988884 6899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 005106 550 GRVAASQLHMLVREH 564 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~ 564 (714)
..|..+...++..
T Consensus 111 --~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 111 --KQVGALKSMVEDK 123 (144)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455555555444
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.81 E-value=0.073 Score=49.02 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 478 LSYPYMYRASSLMTKQNV---EAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~---~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
.+.+-++.|-++...+.. .++|..+...+.-.|. -++++.++..+.++|+|++|.+..+++++.+|+| .
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N------~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN------K 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC------H
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC------H
Confidence 467888888888887765 4789999999988884 6899999999999999999999999999999999 4
Q ss_pred HHHHHHHHHHHhhh
Q 005106 553 AASQLHMLVREHID 566 (714)
Q Consensus 553 ~a~~~~~~l~~~~~ 566 (714)
.|..+...++..+.
T Consensus 113 QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 113 QVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46666665555544
No 261
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.69 E-value=0.013 Score=53.62 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=64.5
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
=|+|.|||..|..-+..|.... .+||...- ......++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 3889999999999999997542 23454311 11234566665 6999999999999999997 6554 4788
Q ss_pred HHHHHhhhChhhHH-HHHH
Q 005106 258 ILIFANKFCCERLK-DACD 275 (714)
Q Consensus 258 lL~aAd~~~v~~L~-~~C~ 275 (714)
++.-|++|+|+.+. +.|+
T Consensus 87 l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHH
T ss_pred HHHHHHHcCCChHHHHHHH
Confidence 99999999999873 4443
No 262
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.41 E-value=0.014 Score=52.68 Aligned_cols=84 Identities=10% Similarity=0.124 Sum_probs=65.5
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~-~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~lL~ 260 (714)
|+|.|||..|...+..|.... ..+.+||.+.. ......++-|. -+|..|+.+|+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 889999999999999998663 24566766422 12334667776 7899999999999999997 6543 4678999
Q ss_pred HHhhhChhhHH
Q 005106 261 FANKFCCERLK 271 (714)
Q Consensus 261 aAd~~~v~~L~ 271 (714)
-|++|+|+...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999999754
No 263
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.17 E-value=0.0089 Score=52.99 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=63.6
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~l 258 (714)
|+|.|||+.|...+..|..... +||....+ .....++-|. =+|..|+.+|+|+.||++. ++++ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999975432 34544111 1233566675 6899999999999999997 6543 47889
Q ss_pred HHHHhhhChhhHH-HHHH
Q 005106 259 LIFANKFCCERLK-DACD 275 (714)
Q Consensus 259 L~aAd~~~v~~L~-~~C~ 275 (714)
+.-|++|+++.+. ..|+
T Consensus 75 ~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHHHHHTCCSCCBCHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 9999999999863 4444
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.14 E-value=0.87 Score=49.18 Aligned_cols=75 Identities=8% Similarity=-0.082 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCHHHHHHHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-------QMKRSFEAFFLKAYA 680 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai-------~i~~~~~a~~~~~~~ 680 (714)
..++.++..+|++++|+..++++++.+|-+-.++..+=.+|+..|+..+|++.|++.- .+.|+-+---+-.-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999999999999998864 468888833333333
Q ss_pred hh
Q 005106 681 LA 682 (714)
Q Consensus 681 ~~ 682 (714)
|.
T Consensus 255 l~ 256 (388)
T 2ff4_A 255 LR 256 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.05 E-value=0.11 Score=49.68 Aligned_cols=113 Identities=9% Similarity=-0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--cchh---------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHH
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIY---------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGW 450 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~---------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ 450 (714)
+++.-....++.|.|+.|+-..+.++.. ++.+ ++.++|.+++.+|+|..|...|.+||..... ...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445556677888899998888887766 2223 5678888999999999999999888776321 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
++-..|.. ..+-..+.+ +...+.-+..|.+++++|++++||..++.+
T Consensus 102 ~~~~~~~~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNS-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccc-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11000100 001111223 456678888999999999999999987653
No 266
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.89 E-value=0.018 Score=53.67 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=64.2
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
=|+|.|||..|...+..|.... .+||...-+ .....++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 4889999999999999997542 345544111 1234567775 6999999999999999997 6544 4788
Q ss_pred HHHHHhhhChhhH-HHHH
Q 005106 258 ILIFANKFCCERL-KDAC 274 (714)
Q Consensus 258 lL~aAd~~~v~~L-~~~C 274 (714)
++.-|++|+|+.+ ++.|
T Consensus 109 l~eEa~fy~i~~l~l~~C 126 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDC 126 (140)
T ss_dssp HHHHHHHHTCCGGGBCTT
T ss_pred HHHHHHHcCCChHHHHHH
Confidence 9999999999987 3444
No 267
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.57 E-value=0.023 Score=49.84 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=61.3
Q ss_pred EEEEEcCeEEEeehhhhhcCCH-HHHHhhcC-CCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCCCCHH-HHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~-yF~amF~~-~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~i~~~-~v~~lL 259 (714)
|+|.|||..|...+..|...-. .+-+||.+ ........++-|. -+|..|+.+|+|+.| |++. ++++ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 7899999999999999964421 23333332 1111234677775 789999999999999 8987 5443 578899
Q ss_pred HHHhhhChhhHH
Q 005106 260 IFANKFCCERLK 271 (714)
Q Consensus 260 ~aAd~~~v~~L~ 271 (714)
.-|++|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998744
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.43 E-value=0.11 Score=49.54 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC---------------
Q 005106 462 DKRWEDLDKATALDPTLS---------YPYMYRASSLMTKQNVEAALAEINRILGFK------LA--------------- 511 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~---------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~------P~--------------- 511 (714)
+.|+...+.++.+..++. ..+...|.++...|+|..|...|++||.+. |+
T Consensus 37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~ 116 (167)
T 3ffl_A 37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ 116 (167)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc
Confidence 666555555544443333 478899999999999999999999998762 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 512 -----LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 512 -----~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+.-+..+.||.++|++++|+.-.+.+
T Consensus 117 ~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 117 CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 134455678999999999999987664
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.38 E-value=0.54 Score=48.34 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
..+.+.|+.++|++.....|+-+|. .+.-.....++.-.|+|+.|+.-++.+.+++|++.. .+...+.+++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-----~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-----GASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----HHHHHHHHHHHHH
Confidence 3567789999999999999999995 665566778899999999999999999999999842 2323344444443
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
.+-+-.. ....-.-++ +|..-....-.++.....|+.++|.+.-.+|++..|..+
T Consensus 80 ~R~~vfa-------G~~~P~~~g-----------~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFAQ-------GAATAKVLG-----------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHTT-------SCCCEECCC-----------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHc-------CCCCCCCCC-----------CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 3333221 111111111 122223334456677888999999999999999998754
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.09 E-value=0.58 Score=50.61 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
...++.++..+|++++|+..+.++++.+|- -..+..+-.++...|+..+|++.|++.-+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888888888888884 44555556678888888888888877544
No 271
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.92 E-value=0.59 Score=43.98 Aligned_cols=115 Identities=9% Similarity=-0.104 Sum_probs=73.1
Q ss_pred CCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 KLA-LECLELRFCFFLALEDY------QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ~P~-~~~~~~R~~~~~~lgd~------e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
.|+ ++.|..-.....+.|+. +.-+..|++|+.--|-...-..+.=+.-. =....|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW-----------IrYA~~------- 70 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ-----------VRFAEL------- 70 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH-----------HHHHHH-------
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH-----------HHHHHH-------
Confidence 553 66665555555555666 66667777777766543211111111110 001111
Q ss_pred ccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 582 SSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 582 ~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
....|.+ +-.+|+.|+.+....+..|...|..-.+.|....|...+.+|+.+.|...+.+
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 1112222 47789999999999999999999999999999999999999999999877653
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.71 E-value=2.6 Score=48.55 Aligned_cols=47 Identities=9% Similarity=-0.131 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
...++|++++|+...+. -.+...|...|..+.+.|+++.|+++|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44567777777765432 124666777777777778888888777765
No 273
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.69 E-value=0.75 Score=43.29 Aligned_cols=102 Identities=11% Similarity=-0.021 Sum_probs=55.3
Q ss_pred HhccchhhHhhHHHHHHHhCCH------HHHHHHHHHHHhcCCCcH--------HHHHHHH---hcCChhHHHHHHHHHH
Q 005106 410 VNAGHIYSIAGLARLGYIKGHK------LWAYEKLNSVISSVTPLG--------WMYQERS---LYCEGDKRWEDLDKAT 472 (714)
Q Consensus 410 L~~~~~~a~~~lg~~~~~~G~~------~~A~~~~~~aI~~~p~~~--------~ay~~rg---~~~~~~eAl~d~~kAi 472 (714)
+..+..+.|..........|+. +.-++.|++||..-|+.. ..|.+-+ ...+.++|...|+.|+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445555555555555555666 555666777776665421 1111000 0122355566666666
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.+...++..|...|.--.++|+...|...+.+||++.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 666666666666666666666666666666666666664
No 274
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.3 Score=57.45 Aligned_cols=60 Identities=17% Similarity=0.018 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
...+..-++.-|...|+++-|+...++|....|++=..++.++.+|..+|+||.|+-...
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 345777788888999999999999999999999999999999999999999999995543
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.34 E-value=2.9 Score=48.14 Aligned_cols=237 Identities=11% Similarity=-0.025 Sum_probs=140.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---H--hc-CC-hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER---S--LY-CE-GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~r---g--~~-~~-~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
+.......+.+.|...+.+.....+ +.......+ + .. .. ..++...+.++....++....-...+.++ ..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC
Confidence 4445556677888777766543221 212211111 1 11 11 35666677776655444433333334454 569
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
+++.|...|++.-.-.++ +...+-+|.++..+|+.++|...|+++.. +. .|||..++..+... ...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~~Lg~~-------~~~-- 366 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQRIGEE-------YEL-- 366 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHHHTTCC-------CCC--
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHHHcCCC-------CCC--
Confidence 999999999876543223 55567788889999999999999999986 33 36776555443210 000
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 573 ~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
......... ...+..+| -+.++..|..+|...+|..-.+.+++.. +.+-...++.+....|
T Consensus 367 -------~~~~~~~~~-----~~~~~~~~-----~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~ 427 (618)
T 1qsa_A 367 -------KIDKAPQNV-----DSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQ 427 (618)
T ss_dssp -------CCCCCCSCC-----CCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT
T ss_pred -------CCCCCChhH-----HhhhccCh-----HHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Confidence 000000000 01122222 3577888999999999999888887643 2344557788888899
Q ss_pred CHHHHHHHHHHHHhcC------C--------------CHHHHHHHHHHhhccCCCCCch
Q 005106 653 HCEEGLRKAEESIQMK------R--------------SFEAFFLKAYALADSSQDSSCS 691 (714)
Q Consensus 653 ~~eeAl~~ye~Ai~i~------~--------------~~~a~~~~~~~~~~~~~~~~~~ 691 (714)
.++.++....++-..+ | .....++.|++.-.|+.||..-
T Consensus 428 ~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 428 WWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp CHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred ChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 9998886655432221 1 1223466777888888887543
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.34 E-value=2.9 Score=40.10 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=84.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCchhh
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT----LSPDYRMF 548 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~----L~P~~~~~ 548 (714)
|-|..++.-+-++.++.-.|.|..|+-.+. +.+ ....+....+|..++||..|+...+.+++ -||+-.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d-- 100 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-- 100 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC--
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--
Confidence 456666777888999999999888876543 333 55567788999999999999999999994 335420
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH-HHHHHHHHHcCChHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-FRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~-~~~g~~L~~lg~~eeAl~~~ 627 (714)
++ -+..-+||++-+.+ ...|.++...|..+||++.+
T Consensus 101 ----------------------~~---------------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 101 ----------------------AR---------------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp ----------------------HH---------------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------cc---------------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 11 12233568887764 55799999999999999999
Q ss_pred HHHHHhCCCCh
Q 005106 628 QLARQHAASDH 638 (714)
Q Consensus 628 ~~Al~l~P~~~ 638 (714)
.+...+.|-.+
T Consensus 138 ~~Sf~~~~lf~ 148 (242)
T 3kae_A 138 VRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHCCCHH
T ss_pred hhhcCCccccc
Confidence 99999998543
No 277
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.08 E-value=0.79 Score=51.38 Aligned_cols=70 Identities=14% Similarity=-0.073 Sum_probs=41.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++|.+-...+..+.|...|++|+.++|+++..++.+|.+....|+.-+|+=.|-||+.-...|+ |.-|-.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 3455544455556666666666666666666666666666666666666666666666544444 444333
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.85 E-value=11 Score=40.93 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGF----KLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAA 554 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l----~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~-~~~~~~~~~a 554 (714)
.++|..|.+.|+|.+|+..+++.+.- +.. .+.+.....+|..+|++..+.+.|.+|.+.... +..-..++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47999999999999999999998873 222 233444556899999999999999999876411 1111223444
Q ss_pred HHHHHHHHH-hhhhhhHHH
Q 005106 555 SQLHMLVRE-HIDNWTIAD 572 (714)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A~ 572 (714)
....|.... ..++|..|.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~ 201 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAF 201 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHH
T ss_pred HHHhhHHHHHhccCHHHHH
Confidence 555555555 577888773
No 279
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.95 Score=53.23 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=41.8
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
++++-|+..-.+|+.+-|....+|+.++.+|..+|+|+.|+-.+|-.
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34488898899999999999999999999999999999999888764
No 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.21 E-value=8.8 Score=44.09 Aligned_cols=110 Identities=9% Similarity=-0.051 Sum_probs=60.4
Q ss_pred HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
..+.|++++|.+.. -.++....|..+|..+.+.|+++.|.+.|.++ +++ +.+...|..
T Consensus 662 ~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~--------------~d~---~~l~~l~~~-- 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA--------------HDL---ESLFLLHSS-- 719 (814)
T ss_dssp HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------TCH---HHHHHHHHH--
T ss_pred hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------------cCh---hhhHHHHHH--
Confidence 34566777766543 23455667777888888888888887776532 111 222222211
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
..+..-+..+|.+....|+++.|...|-+. . ++ .....+|.+++++++|+.-
T Consensus 720 ---~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g-~~---~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 720 ---FNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G-DI---QGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T-CH---HHHHHHHHHTTCHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C-CH---HHHHHHHHHcCChHHHHHH
Confidence 334455556666666677766665554331 0 11 1122355666666666653
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.95 E-value=13 Score=45.77 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=85.7
Q ss_pred HHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHhcCChhHHHHHHHH
Q 005106 392 VRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQERSLYCEGDKRWEDLDK 470 (714)
Q Consensus 392 ~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~-p~~~~ay~~rg~~~~~~eAl~d~~k 470 (714)
.....+.++-|.+ +..=+..++. .-+-+|+++...|++++|+..|.+|..-- .... .. ...........
T Consensus 821 ~l~~~~~~~~~~~-l~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-------l~-~~~~~~~~~~~ 890 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ-LIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-------QF-AVLREFQEIAE 890 (1139)
T ss_dssp HHHHHSCTTHHHH-HHHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-------SC-SSHHHHHHHHH
T ss_pred HHHHhhhHHHHHH-HhhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-------hh-hhhcccccccc
Confidence 3444566655543 2222222333 34668999999999999999999875421 1100 00 00112222233
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-H----HHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-L----ECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~-~----~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
........+..|.....++-+.|.++.++.....||+..+ + . ..|.+....+..+|+|++|-....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3334445567788888889999999999999999999754 3 2 245556678999999999976554
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.39 E-value=2.2 Score=43.79 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
-+++-|..++|+......++-+|.|++....+-..|.-.|+++.|....+-+..++|++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456778899999999999999999999999999999999999999999999999999888
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.51 E-value=1.9 Score=48.34 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+.++|..|.+....+++.+|.+.+..|++..|.+..+
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 5678889999999999999999999999999876543
No 284
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=76.86 E-value=6.3 Score=44.01 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=33.1
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
.+|-+..-++.+..|..+|.+|+.+.|+.|..|.+.|.+ +..-+|+-.|-+++.-..-++.+..|+..++
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444455555555555555555555555554432 2223444444455544444444554444444
No 285
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.81 E-value=17 Score=44.68 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHH
Q 005106 484 YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLV 561 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~-L~P~~~~~~~~~~a~~~~~~l 561 (714)
.+..-+...|+++-|.. +. .+-| ++..-+.+|.++...|++++|...|++|-. +.++.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~-l~---~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-~~---------- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ-LI---GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AV---------- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH-HH---HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-SS----------
T ss_pred HHHHHHHHhhhHHHHHH-Hh---hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-hh----------
Confidence 45556777777766543 33 3345 455558899999999999999999998743 22221100 00
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH---hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE---SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~---l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+........ ...+.+.+|.....++.+.|.++.+++..+.|++..+.+.
T Consensus 882 ----------------------------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 882 ----------------------------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 933 (1139)
T ss_dssp ----------------------------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC
T ss_pred ----------------------------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC
Confidence 000111111 1222344555566677778888888888888888775443
Q ss_pred h-----HHHHHHHHHHhcCCHHHHHHHHH
Q 005106 639 E-----RLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 639 e-----a~~~~G~~ly~~G~~eeAl~~ye 662 (714)
+ .+.+.=....++|+||+|....-
T Consensus 934 ~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 934 EDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3 23333345667788888765553
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.04 E-value=25 Score=37.92 Aligned_cols=58 Identities=10% Similarity=-0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
++|.++...|.+.+|+..+.+.++--.. --|.+..+..++..+|++.++-+.|++|..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6788899999999999888888874222 235667777778889999999888888854
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=74.22 E-value=64 Score=31.00 Aligned_cols=53 Identities=19% Similarity=0.017 Sum_probs=42.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
.+|.+..-.|+|..|.-.. ..++-.-+.++-..++..+.++..|+..+++.|+
T Consensus 38 L~~I~LyyngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHL---HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH---HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhhhhhcchHhHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888889998876543 3356677778888899999999999999999885
No 288
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.63 E-value=17 Score=39.44 Aligned_cols=80 Identities=6% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A--LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~--~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+.+.++.+-..-+..-..++..+|..|.+.|++++|+..|.++...-. . .+.+.....++...||+..|...+++|
T Consensus 115 ~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 115 EKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334443332334455567889999999999999999999999887643 2 455555566788899999999999998
Q ss_pred HhhC
Q 005106 539 LTLS 542 (714)
Q Consensus 539 l~L~ 542 (714)
..+-
T Consensus 195 ~~~~ 198 (429)
T 4b4t_R 195 NSMI 198 (429)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7753
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.39 E-value=33 Score=41.72 Aligned_cols=68 Identities=4% Similarity=-0.106 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh--hCCCchh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALED-YQAALCDVQAILT--LSPDYRM 547 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd-~e~Al~d~~~al~--L~P~~~~ 547 (714)
..|+-+-..|...|+.++|+..|++..+ +.|+.-.|...-..+.+.|+ .++|.+.|+.-.+ +.||...
T Consensus 166 vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vt 238 (1134)
T 3spa_A 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhh
Confidence 3555555566666666666666665554 34554444444444445554 3555555555544 3455443
No 290
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.58 E-value=4.4 Score=35.15 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
++++|...++.+|+.|+++.|++.|.+|+....
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998765
No 291
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=66.20 E-value=5.8 Score=44.47 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=59.9
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcC-----CCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCCCCHH-HHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNG-----SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLL 256 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~-----~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~i~~~-~v~ 256 (714)
|++.|||+.|...+..|.-. =.+|+.. ........++-|. =+|..|+.+|+|+.| |++. .+.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~D---R~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEEC---SCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEEc---CChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 88999999999999999643 2223322 1112234667775 799999999999999 9987 5544 466
Q ss_pred HHHHHHhhhChhhHH
Q 005106 257 EILIFANKFCCERLK 271 (714)
Q Consensus 257 ~lL~aAd~~~v~~L~ 271 (714)
.+..=|++|+++.+.
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 788899999998754
No 292
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.67 E-value=44 Score=31.91 Aligned_cols=49 Identities=20% Similarity=0.011 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
..-.++|+++.|....+.. .+...|..+|..-...|+++-|+++|+++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3445688888888876543 346778888888888888888888888764
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.31 E-value=13 Score=40.43 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc----c-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA----G-HIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~----~-~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
++..+|..+...|++++|.+.|.++... + -.+.+...-+++...|++..+...++++-..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5578999999999999999999998765 2 2445667788999999999999888887654
No 294
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=57.68 E-value=15 Score=30.70 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 379 ~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
.+++++.+...++..-..|+|++|+.+|..||+.
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455666666777777788888888888877664
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.45 E-value=26 Score=29.16 Aligned_cols=32 Identities=22% Similarity=0.068 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH
Q 005106 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (714)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI 442 (714)
-.+.|+....+|++. .+.|++.+|+..|..+|
T Consensus 15 ~~~~Ai~lv~~Ave~-------------D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 15 LEEMARKYAINAVKA-------------DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHH
Confidence 456677777777664 45588888888775333
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.26 E-value=15 Score=31.34 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+..+-+++..+.+.|+++||+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67788999999999999999999888764
No 297
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.01 E-value=30 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=10.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAV 410 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL 410 (714)
...++..-..|+|++|+.+|..||
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 333334444444444444444443
No 298
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.75 E-value=14 Score=31.53 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
+..+..|+..+...|+|+|||....+|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56677899999999999999998888773
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.54 E-value=41 Score=37.67 Aligned_cols=143 Identities=10% Similarity=-0.087 Sum_probs=57.1
Q ss_pred HHhccchHHHHHHHHHHHh---c--------c--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 393 RLLRKEYDEAEHLFEAAVN---A--------G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~---~--------~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
....++|++|..+-.+.+. + + .+-.|++.++++...|+........+..+++.|.+-.+|..-
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta---- 221 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA---- 221 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHC----
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH----
Confidence 3456788888776665541 1 1 122366677777777777766555555555444332222111
Q ss_pred ChhHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CHH---HHHHHHHHHHhcCCHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALE---CLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~-~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---~~~---~~~~R~~~~~~lgd~e~Al 532 (714)
.++.|++- +..++-+=-.|...+.|+.|....+|+.-... +.+ .++..|.++...++|.+|.
T Consensus 222 -----------~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 222 -----------SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp -----------CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 11222211 12233344466777888889888888852111 122 2345678888999999999
Q ss_pred HHHHHHHhhCCCchhhhh
Q 005106 533 CDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 533 ~d~~~al~L~P~~~~~~~ 550 (714)
.++..|++..|....+.|
T Consensus 291 ~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 291 EYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHhCCcchhhhh
Confidence 999999998887644433
No 300
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.12 E-value=25 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.040 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 399 YDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 399 y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
.+.|+....+|++. -+.|++.+|+..|..+|+.
T Consensus 8 ~~~Ai~lv~~Ave~-------------D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKA-------------DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH
Confidence 45777777777665 4558888888888877774
No 301
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=48.27 E-value=12 Score=34.59 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
++.+++.+++..|+.|+++.|++.|.+|+.....
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6688999999999999999999999999998764
No 302
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=46.18 E-value=1.2e+02 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=27.4
Q ss_pred HhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
.+.|+++.|.+.-+. ++...-|..+|......|++.-|.++|.+
T Consensus 16 L~lg~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 356667766655332 34555666777777777777777666653
No 303
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=46.16 E-value=1.5e+02 Score=36.23 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCchhhh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRIL-----GFKLALECLELRFCFFLALEDYQAALCDVQAILT--LSPDYRMFE 549 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL-----~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~--L~P~~~~~~ 549 (714)
..|+.+-..|...|+.++|...|++.- ...|+...|+..-..|.+.|+.++|+.-|+.-.+ +.||-..|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 457778889999999999999997643 3689988888888888999999999999999877 668865443
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.44 E-value=43 Score=28.39 Aligned_cols=10 Identities=10% Similarity=-0.253 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q 005106 429 GHKLWAYEKL 438 (714)
Q Consensus 429 G~~~~A~~~~ 438 (714)
|++.+|+..|
T Consensus 29 g~y~eAl~~Y 38 (93)
T 1wfd_A 29 SRYQQALVCY 38 (93)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4444444443
No 305
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=42.06 E-value=37 Score=36.17 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 464 Al~d~~kAi~L-----dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
++..|.+||.. +-.+.+||+++|..+.+.+++.||+..+-.|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 55666666654 34557888888888888888888888776654
No 306
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.81 E-value=1.5e+02 Score=32.18 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=78.5
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--c------chh
Q 005106 349 CLLSEVAMNLDPRSDKTVCFLERLLESAET----DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--G------HIY 416 (714)
Q Consensus 349 ~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~----~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~------~~~ 416 (714)
-++.|+...+.........+++.+...... ...++.....|+..+...|++.+|.........- + -..
T Consensus 99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve 178 (445)
T 4b4t_P 99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ 178 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 456676554432222334455443222111 1123444567899999999999999988875321 1 122
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcC
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPT---LSYPYMYRASSLMTKQ 493 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~---~~~ay~~rg~~l~~l~ 493 (714)
.+..-.+++...|++..|...++++-.. +....|. -...|...|.++...+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~--------------------------~~~~~~~~~lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKK--------------------------TFKNPKYESLKLEYYNLLVKISLHKR 232 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------HHHSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------hcccCCcHHHHHHHHHHHHHHHHHhh
Confidence 3445677888899999887777654211 0111000 0134556677888888
Q ss_pred CHHHHHHHHHHHHh
Q 005106 494 NVEAALAEINRILG 507 (714)
Q Consensus 494 r~~eAl~~~~kAL~ 507 (714)
+|.+|-..|..++.
T Consensus 233 ~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 233 EYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888888774
No 307
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=41.50 E-value=37 Score=36.79 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 464 Al~d~~kAi~L-----dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
++..|.+||.. .-.+.++|+++|..+.+.+++.||+..+-.|-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 45556666653 34567888888888888888888888776654
No 308
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=41.11 E-value=31 Score=28.58 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 379 ~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
.++++..+...++-.-..|+|++|+.+|..|++.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555556666666778888888888877764
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=40.12 E-value=32 Score=30.53 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 380 lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++++.+...++..-..|+|++|+.+|..||+.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555555666677888888888777664
No 310
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.81 E-value=34 Score=28.99 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 380 lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
+++++.+...++..-..|+|++|+.+|..||+.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445666667777778889999999999888765
No 311
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=37.31 E-value=20 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
++.+++..++.+|++++++.|++.|.+|+.+.+.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998764
No 312
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.10 E-value=2.5e+02 Score=25.86 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+++..+.+++ .-.++.....-..+|.++|..+ ++..+...+. + .+......-.+++...|. ++++....+.+.
T Consensus 112 ~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d-~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 112 RAVEPLIKAL--KDEDWFVRIAAAFALGEIGDER-AVEPLIKALK-D-EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GGHHHHHHHT--TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-C-SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-C-CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444 2233444444555555555543 4555444442 2 233444444444444443 344444444443
No 313
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=36.26 E-value=28 Score=29.40 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.8
Q ss_pred CHhhHHHHHHHhhhcCChhHHHHHHHHHHhhc
Q 005106 284 SREDAVELMGYAIEENSPVLAVSCLQVFLREL 315 (714)
Q Consensus 284 ~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~ 315 (714)
+.+|+..++..|..++.+.|.+.|.+++.+++
T Consensus 78 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 78 EADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 46899999999999999999999999987753
No 314
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.76 E-value=63 Score=34.43 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhc--cchHHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHHH
Q 005106 384 LAFHQLGCVRLLR--KEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (714)
Q Consensus 384 ~A~~~lG~~~~~~--g~y~eA~~~f~~AL~~-------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI 442 (714)
+|+-+||..-... .....++..|.+||.. .|.|.|.++|..+++.|++.+|++....|-
T Consensus 256 mALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 256 MAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 4555555543321 2223378889998876 489999999999999999999988765443
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=35.36 E-value=43 Score=27.29 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
..+|..+...|++++|+..|-+||..-|+|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4578888888888888888888888888754
No 316
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.21 E-value=7.1e+02 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=24.2
Q ss_pred cCCcccchhhHHHHHhhhhhchhHHHHHHHHHhhhh
Q 005106 77 LCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQ 112 (714)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~r~lg~~~l~~rsl~~a~~ 112 (714)
.-+-.+|....|.=..|+=-|||. +.||+-|..
T Consensus 63 d~~f~~r~laalvaSkvyy~Lg~~---~~al~yaL~ 95 (963)
T 4ady_A 63 DDTFSDREMAALIASKVYYNLGEY---ESAVKYALA 95 (963)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHTCH---HHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHheeccch---HHHHHHHHh
Confidence 344467888888888888888985 567766555
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.66 E-value=1.4e+02 Score=29.02 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=63.3
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCC------
Q 005106 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEESIQMKRS------ 670 (714)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l--y~~G~~eeAl~~ye~Ai~i~~~------ 670 (714)
.||.....|...+... ..+...++...|....+..=.-.-|++|.+|+. -..|++++|-..|++.|+-+.-
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3455555565554443 122255799999999999998899999999885 4569999999999999997432
Q ss_pred --HHHHHHHHHHhhccCC--CCCchhhHHHHHHHh
Q 005106 671 --FEAFFLKAYALADSSQ--DSSCSSTVVSLLEDA 701 (714)
Q Consensus 671 --~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 701 (714)
+..|-.| +..+++ |-..-..+-..++..
T Consensus 154 ~~~~~F~~R---~~~~~~~~~~~~~~~~~~~~~~~ 185 (202)
T 3esl_A 154 RSLSNYEDR---LREMNIVENQNSVPDSRERLKGR 185 (202)
T ss_dssp HHHHHHHHH---HHHTTCCCC----CHHHHHHHHH
T ss_pred HHHHHHHHH---HHhcCCCCCCCccccHHHHhccc
Confidence 2233333 455555 544434444445555
No 318
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.98 E-value=76 Score=34.41 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 400 DEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 400 ~eA~~~f~~AL~~-------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
..++..|++||.. .|.|.|.++|..+++.+++.+|++.+..|-.
T Consensus 281 p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 281 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 3567888888875 4889999999999999999999988876543
No 319
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.39 E-value=2.1e+02 Score=31.00 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHhc-------cchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 383 ~~A~~~lG~~~~~~---g~y~eA~~~f~~AL~~-------~~~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
.+|+-+||..-... |+. .++..|.+||.. .|.|.|.++|..+++.|++.+|++....|
T Consensus 277 PmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 35566666554332 222 378889998876 48999999999999999999998876544
No 320
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=29.03 E-value=4.6e+02 Score=26.39 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHH-----hCCCChhHHHHHHHH------HH-hcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCC
Q 005106 621 EAAMRSLQLARQ-----HAASDHERLVYEGWI------LY-DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (714)
Q Consensus 621 eeAl~~~~~Al~-----l~P~~~ea~~~~G~~------ly-~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~ 688 (714)
+.|+..|+.|.. +.|.++-. +|++ +| -+|+.++|.....+|+ -.|++--|+ |+-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPir---LGLaLNfSVFyYEiln~~~~Ac~lAk~Af----------d~Ai~eld~-L~E 217 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIR---LGLALNFSVFYYEILNSPDRACNLAKQAF----------DEAIAELDT-LGE 217 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHHHHH-TC-
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHccCHHHHHHHHHHHH----------HHHHHhhhc-cCh
Confidence 467788888874 67777743 4444 33 3699999999999875 455555554 444
Q ss_pred Cc---hhhHHHHHHHhh
Q 005106 689 SC---SSTVVSLLEDAL 702 (714)
Q Consensus 689 ~~---~~~~~~~~~~~~ 702 (714)
++ |..++|||-|=|
T Consensus 218 esykDstlImqLLRDNL 234 (260)
T 1o9d_A 218 ESYKDSTLIMQLLRDNL 234 (260)
T ss_dssp ----CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 43 788999998754
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.61 E-value=2.3e+02 Score=26.19 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 620 PEAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~l--y~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
..++...|....+..=.-.-|++|.+|+. -..|++++|-..|++.|+-+.-...-
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34588899998888888888899988874 55699999999999999875444333
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.96 E-value=1.5e+02 Score=27.68 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHH--------HhcCCHHHHHHHHHHHHhc
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWIL--------YDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~l--------y~~G~~eeAl~~ye~Ai~i 667 (714)
+..|..++..|++=+|-+.++.+..-.|.. .+..+..|+|. +..|+...|...+++|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 557778888899999999999999987664 35677778777 6779999999999999883
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.20 E-value=4.6e+02 Score=25.78 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHH---HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLL---LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI--LYDTSHCEEGLRKAEES 664 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~---L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~--ly~~G~~eeAl~~ye~A 664 (714)
+.++++++..--.+..+++.-=.+ +.-.....++...|....+..=.-.-|++|.+|+ |-..|++.+|-..|++.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568888888766655543221111 1112233578899999999999999999999998 45579999999999999
Q ss_pred HhcC
Q 005106 665 IQMK 668 (714)
Q Consensus 665 i~i~ 668 (714)
|+-+
T Consensus 177 i~~~ 180 (223)
T 4aez_C 177 KRMK 180 (223)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9964
No 324
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.96 E-value=2.2e+02 Score=26.39 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=56.0
Q ss_pred hHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--c--chhhH
Q 005106 346 SLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--G--HIYSI 418 (714)
Q Consensus 346 ~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~--~~~a~ 418 (714)
+..-.+.|+.-...........+|++.++-. ..+..+.. +-.+=..+. ...+++...|.-.... + .+..|
T Consensus 28 ~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~R-yLklWl~ya--~~~~dp~~if~~L~~~~IG~~~AlfY 104 (152)
T 4a1g_A 28 EWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPR-FISYCLKFA--EYNSDLHQFFEFLYNHGIGTLSSPLY 104 (152)
T ss_dssp HHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHH-HHHHHHHHH--TTBSCHHHHHHHHHTTTTTTTBHHHH
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHH-HHHHHHHHH--HhcCCHHHHHHHHHHCCCcHHHHHHH
Confidence 3445677886655433445667777754322 11111111 111111111 1234477788776544 4 44445
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSV 445 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (714)
..-|..+...|++.+|-+-|+..|+..
T Consensus 105 e~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 105 IAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 567788999999999999999999865
No 325
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.22 E-value=5.3e+02 Score=25.89 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHh-----cCCC-HHHH---HHHHH-HHHhcCCHHHHHHHHHHHHh--------hCCCchhhhhhHHHHHH
Q 005106 496 EAALAEINRILG-----FKLA-LECL---ELRFC-FFLALEDYQAALCDVQAILT--------LSPDYRMFEGRVAASQL 557 (714)
Q Consensus 496 ~eAl~~~~kAL~-----l~P~-~~~~---~~R~~-~~~~lgd~e~Al~d~~~al~--------L~P~~~~~~~~~~a~~~ 557 (714)
+.|...|+.|+. +.|. |--+ .|... .|.-+++.++|...-++|+. ++.+.. .-....
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~Eesy-----kDstlI 226 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESY-----KDSTLI 226 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhh-----HHHHHH
Confidence 356667777764 4563 4222 22223 35557888888876555542 232210 113444
Q ss_pred HHHHHHhhhhhhH
Q 005106 558 HMLVREHIDNWTI 570 (714)
Q Consensus 558 ~~~l~~~~~~~~~ 570 (714)
..+|+..+..|+.
T Consensus 227 mqLLRDNLtlWts 239 (260)
T 1o9d_A 227 MQLLRDNLTLWTS 239 (260)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhh
Confidence 5566777777763
No 326
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.44 E-value=5.5e+02 Score=25.79 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcc------------------------chhhHhhHHHHHHHhC-----CHHHHHH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAG------------------------HIYSIAGLARLGYIKG-----HKLWAYE 436 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~------------------------~~~a~~~lg~~~~~~G-----~~~~A~~ 436 (714)
+..+..+..+.++|++...+..+.++.+ ...+|.-+..+-.+.. .....++
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~~~i~ 110 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCG 110 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHHHHHH
Q ss_pred HHHHHHhc---------------------CCCcHHHHHHH--HhcCCh--------------hHHHHHHHHHH----hcC
Q 005106 437 KLNSVISS---------------------VTPLGWMYQER--SLYCEG--------------DKRWEDLDKAT----ALD 475 (714)
Q Consensus 437 ~~~~aI~~---------------------~p~~~~ay~~r--g~~~~~--------------~eAl~d~~kAi----~Ld 475 (714)
.|.+-|+. ......+++.. |.|.++ +.|...|.+|. +|.
T Consensus 111 ~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~ 190 (260)
T 2npm_A 111 KYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLE 190 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred CCChHHHHHHHHHHHh-------cCCHHHHHHHHHHHH
Q 005106 476 PTLSYPYMYRASSLMT-------KQNVEAALAEINRIL 506 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~-------l~r~~eAl~~~~kAL 506 (714)
|+++ ..+|.++-- +|+.++|+....+|+
T Consensus 191 pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 191 PTHP---IRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp TTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
No 327
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.30 E-value=80 Score=26.32 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=17.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA 412 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~ 412 (714)
...++-.-..|+|++|+.+|..||+.
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444456677888888888877764
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.87 E-value=1.8e+02 Score=34.81 Aligned_cols=130 Identities=14% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHhcCCh
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI---SSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI---~~~p~~~~ay~~rg~~~~~ 461 (714)
....+.......|.++-|.+ +..=+..++... +-+|+++...|++++|...|.+|- ................
T Consensus 812 ~~~~l~~~L~~~~~~~~a~e-L~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l--- 886 (950)
T 4gq2_M 812 LVTELVEKLFLFKQYNACMQ-LIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI--- 886 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH---
T ss_pred cHHHHHHHHHHhcHHHHHHH-HHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc---
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--HHHHHHHHHHHHhcC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF----KLA--LECLELRFCFFLALE 526 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l----~P~--~~~~~~R~~~~~~lg 526 (714)
--.++.+......|.....++-..+-++-++...+.||+. +|+ .+.|+....+...+|
T Consensus 887 -------l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 887 -------AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -------HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 329
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=23.35 E-value=41 Score=29.97 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred CHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC
Q 005106 284 SREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (714)
Q Consensus 284 ~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~ 317 (714)
+.+|+..++..|..+..+.|.+.|.+++..++..
T Consensus 102 ~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 102 SKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp CTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998877653
No 330
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.14 E-value=70 Score=27.39 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~ 514 (714)
..+|..+...|.+++|+..|-+||..-|+|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45888999999999999999999988888653
No 331
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.04 E-value=85 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccch
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI 415 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~ 415 (714)
-.|.+|..++..++|.+|.+.+..|++.-|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3366777777777777777777777776443
No 332
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.66 E-value=1.3e+02 Score=32.63 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHHHHHHh-----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 464 RWEDLDKATA-----LDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 464 Al~d~~kAi~-----LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
+++.|.+||. -+-...++|.++|..+.+.++|.+|+..+-.|
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 3444555554 23344566666666666666666666655554
No 333
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.18 E-value=1.2e+02 Score=29.38 Aligned_cols=37 Identities=11% Similarity=-0.147 Sum_probs=31.9
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay 452 (714)
...+++|+.+..++++.+|.+++..|+...|..+...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~ 51 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN 51 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH
Confidence 3467899999999999999999999999988766443
No 334
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.48 E-value=1e+02 Score=25.66 Aligned_cols=27 Identities=11% Similarity=-0.030 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+|.-....|++++|+..|..|+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555557778888888888777754
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.20 E-value=6.4e+02 Score=25.36 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHH-----hCCCChhHHHHHHHH------HHh-cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC
Q 005106 620 PEAAMRSLQLARQ-----HAASDHERLVYEGWI------LYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (714)
Q Consensus 620 ~eeAl~~~~~Al~-----l~P~~~ea~~~~G~~------ly~-~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~ 687 (714)
.+.|+..|+.|.+ +.|.++-. +|.+ +|. +++.++|.....+|+ -.|++--|+ |+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPir---LGLaLNfSVFyYEIln~p~~Ac~LAk~AF----------d~Ai~eLd~-L~ 237 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIR---LGLALNFSVFYYEILNSPDRACRLAKAAF----------DDAIAELDT-LS 237 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-cC
Confidence 3567778887764 67888744 4544 233 699999999888864 345665554 44
Q ss_pred CCc---hhhHHHHHHHhh
Q 005106 688 SSC---SSTVVSLLEDAL 702 (714)
Q Consensus 688 ~~~---~~~~~~~~~~~~ 702 (714)
-++ |+.++|||-|=|
T Consensus 238 eesykDstlImQLLRDNL 255 (261)
T 3ubw_A 238 EESYKDSTLIMQLLRDNL 255 (261)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 444 788999997744
No 336
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=20.53 E-value=50 Score=32.68 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
++++|+..++..|+.++++.|++.|.+|+....
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f 163 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHF 163 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999997664
No 337
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=20.32 E-value=62 Score=32.48 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
++++|+..++..|+.++++.|++.|.+|+....
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f 171 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNF 171 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 667899999999999999999999999997654
No 338
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.31 E-value=1.1e+02 Score=25.09 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
..+|.-....|++++|+..|..|+++
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556778888888777777664
Done!