Query 005107
Match_columns 714
No_of_seqs 364 out of 2307
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 18:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301 Voltage-gated Ca2+ cha 100.0 5.5E-61 1.2E-65 575.6 31.0 472 138-668 877-1409(1592)
2 KOG2302 T-type voltage-gated C 100.0 1.4E-54 3.1E-59 473.3 37.0 476 139-671 1162-1696(1956)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 3.4E-53 7.3E-58 508.6 24.8 512 136-668 476-1113(1592)
4 KOG2302 T-type voltage-gated C 100.0 9.1E-53 2E-57 459.2 22.5 555 139-704 657-1438(1956)
5 PF00520 Ion_trans: Ion transp 99.9 2.8E-22 6E-27 198.6 13.9 198 450-655 1-200 (200)
6 KOG3713 Voltage-gated K+ chann 99.9 3.9E-21 8.5E-26 204.2 20.6 246 401-671 172-442 (477)
7 PLN03223 Polycystin cation cha 99.8 3.5E-18 7.5E-23 197.1 23.9 199 448-666 1178-1429(1634)
8 KOG1545 Voltage-gated shaker-l 99.8 8E-19 1.7E-23 177.2 6.5 247 400-671 170-458 (507)
9 KOG1545 Voltage-gated shaker-l 99.7 3.1E-18 6.8E-23 173.0 8.1 239 43-289 143-416 (507)
10 PF00520 Ion_trans: Ion transp 99.6 5.6E-16 1.2E-20 153.3 8.9 154 137-290 1-170 (200)
11 KOG3713 Voltage-gated K+ chann 99.6 4E-14 8.6E-19 151.2 15.9 152 137-291 244-402 (477)
12 PF08016 PKD_channel: Polycyst 99.5 9.3E-13 2E-17 146.6 20.1 188 449-661 214-424 (425)
13 KOG3599 Ca2+-modulated nonsele 99.5 1.1E-12 2.3E-17 152.2 19.5 198 448-668 468-688 (798)
14 KOG4390 Voltage-gated A-type K 99.5 7.7E-16 1.7E-20 156.9 -7.8 237 401-669 165-419 (632)
15 TIGR00870 trp transient-recept 99.2 5E-10 1.1E-14 133.8 20.4 217 448-668 391-624 (743)
16 PLN03223 Polycystin cation cha 99.0 4.6E-08 9.9E-13 114.9 23.2 144 136-282 1176-1378(1634)
17 KOG1419 Voltage-gated K+ chann 98.9 8.9E-09 1.9E-13 110.8 12.8 241 403-670 77-333 (654)
18 KOG3609 Receptor-activated Ca2 98.8 1.3E-07 2.9E-12 107.2 16.0 208 449-668 387-620 (822)
19 KOG4390 Voltage-gated A-type K 98.6 4.3E-09 9.2E-14 108.2 -0.7 145 137-286 231-377 (632)
20 PLN03192 Voltage-dependent pot 98.3 2.1E-05 4.5E-10 95.1 19.5 222 415-661 63-305 (823)
21 KOG1419 Voltage-gated K+ chann 98.2 7.9E-06 1.7E-10 88.6 11.3 147 136-286 128-290 (654)
22 PF08016 PKD_channel: Polycyst 98.1 1.6E-05 3.5E-10 88.8 10.9 135 142-280 220-381 (425)
23 KOG3599 Ca2+-modulated nonsele 97.7 0.00083 1.8E-08 79.1 17.3 134 143-279 476-637 (798)
24 KOG0510 Ankyrin repeat protein 97.4 0.0033 7.2E-08 71.8 14.9 173 473-668 589-766 (929)
25 KOG3733 Mucolipidin and relate 97.2 0.0038 8.2E-08 66.1 11.6 128 519-666 384-514 (566)
26 KOG0498 K+-channel ERG and rel 97.1 0.023 5E-07 66.2 18.1 237 415-662 79-349 (727)
27 KOG3533 Inositol 1,4,5-trispho 97.0 0.038 8.3E-07 65.7 19.2 147 525-671 2398-2581(2706)
28 KOG3676 Ca2+-permeable cation 97.0 0.08 1.7E-06 61.1 20.9 114 544-666 538-654 (782)
29 KOG3614 Ca2+/Mg2+-permeable ca 97.0 0.015 3.2E-07 70.1 15.5 199 447-667 823-1050(1381)
30 TIGR00870 trp transient-recept 96.8 0.014 2.9E-07 70.3 13.9 139 141-279 397-572 (743)
31 PLN03192 Voltage-dependent pot 96.7 0.11 2.5E-06 63.0 21.4 146 137-286 96-271 (823)
32 KOG3609 Receptor-activated Ca2 95.5 0.56 1.2E-05 54.7 17.4 136 139-274 387-559 (822)
33 KOG1420 Ca2+-activated K+ chan 93.8 0.057 1.2E-06 59.3 3.8 46 448-493 164-210 (1103)
34 PRK10537 voltage-gated potassi 93.0 2.5 5.4E-05 46.6 15.2 101 515-646 108-209 (393)
35 cd05022 S-100A13 S-100A13: S-1 92.9 0.43 9.3E-06 40.8 7.1 67 310-381 9-78 (89)
36 PF13499 EF-hand_7: EF-hand do 92.4 0.12 2.6E-06 41.1 3.0 64 311-375 2-65 (66)
37 COG5126 FRQ1 Ca2+-binding prot 91.6 0.33 7.2E-06 46.0 5.3 65 307-376 90-154 (160)
38 cd05027 S-100B S-100B: S-100B 91.6 0.89 1.9E-05 38.7 7.5 71 310-381 9-82 (88)
39 cd00052 EH Eps15 homology doma 89.7 1.7 3.6E-05 34.2 7.3 63 312-381 2-64 (67)
40 cd00213 S-100 S-100: S-100 dom 88.6 3.8 8.1E-05 34.6 9.0 74 308-381 7-82 (88)
41 smart00027 EH Eps15 homology d 87.9 3.2 7E-05 35.7 8.3 66 309-381 10-75 (96)
42 KOG0500 Cyclic nucleotide-gate 87.4 7.3 0.00016 43.1 12.1 66 424-489 7-85 (536)
43 cd05031 S-100A10_like S-100A10 87.3 2.5 5.4E-05 36.3 7.2 72 310-382 9-83 (94)
44 cd05025 S-100A1 S-100A1: S-100 86.8 3.3 7.1E-05 35.4 7.6 70 310-380 10-82 (92)
45 cd00051 EFh EF-hand, calcium b 85.8 3.2 7E-05 31.2 6.6 59 312-375 3-61 (63)
46 cd05026 S-100Z S-100Z: S-100Z 85.0 4.7 0.0001 34.6 7.7 69 311-380 12-83 (93)
47 KOG0501 K+-channel KCNQ [Inorg 83.3 13 0.00029 41.8 11.8 75 414-490 218-306 (971)
48 cd05023 S-100A11 S-100A11: S-1 82.7 7.1 0.00015 33.3 7.7 71 310-381 10-83 (89)
49 KOG0027 Calmodulin and related 81.0 4.7 0.0001 37.9 6.7 66 309-379 8-73 (151)
50 PF00036 EF-hand_1: EF hand; 80.5 1.5 3.3E-05 28.8 2.2 27 351-377 1-27 (29)
51 PTZ00183 centrin; Provisional 79.5 7 0.00015 36.5 7.5 63 309-376 90-152 (158)
52 KOG0498 K+-channel ERG and rel 78.5 66 0.0014 38.2 16.1 40 137-177 121-175 (727)
53 PF13833 EF-hand_8: EF-hand do 77.8 5.2 0.00011 30.1 4.8 47 325-376 4-51 (54)
54 KOG2243 Ca2+ release channel ( 76.7 3.4 7.4E-05 50.0 4.9 137 520-670 4790-4933(5019)
55 PRK10537 voltage-gated potassi 76.5 14 0.0003 40.8 9.6 83 196-286 107-189 (393)
56 KOG0499 Cyclic nucleotide-gate 76.0 48 0.001 37.7 13.2 46 445-490 260-319 (815)
57 PTZ00184 calmodulin; Provision 75.3 10 0.00022 34.8 7.2 62 310-376 85-146 (149)
58 KOG0027 Calmodulin and related 75.1 9.4 0.0002 35.9 6.9 63 309-376 85-147 (151)
59 cd05029 S-100A6 S-100A6: S-100 72.2 20 0.00044 30.4 7.5 68 311-380 12-81 (88)
60 PTZ00184 calmodulin; Provision 71.2 18 0.00038 33.2 7.7 64 309-377 11-74 (149)
61 PF14658 EF-hand_9: EF-hand do 69.8 15 0.00034 29.3 5.7 59 313-375 2-61 (66)
62 KOG1420 Ca2+-activated K+ chan 69.7 1.5 3.2E-05 48.8 -0.1 133 139-287 168-310 (1103)
63 KOG0028 Ca2+-binding protein ( 69.1 17 0.00036 34.4 6.6 63 309-376 106-168 (172)
64 KOG3614 Ca2+/Mg2+-permeable ca 68.3 32 0.0007 42.8 10.6 101 144-245 833-944 (1381)
65 PTZ00183 centrin; Provisional 68.2 21 0.00045 33.2 7.6 63 310-377 18-80 (158)
66 COG5126 FRQ1 Ca2+-binding prot 68.1 25 0.00055 33.4 7.9 66 309-380 20-85 (160)
67 PF14788 EF-hand_10: EF hand; 66.7 14 0.00029 28.0 4.5 36 344-379 15-50 (51)
68 PF13202 EF-hand_5: EF hand; P 65.9 5.5 0.00012 25.1 2.1 23 353-375 2-24 (25)
69 KOG0377 Protein serine/threoni 63.0 34 0.00073 37.4 8.4 76 303-379 541-616 (631)
70 KOG0044 Ca2+ sensor (EF-Hand s 61.2 27 0.00058 34.4 6.9 67 311-377 102-174 (193)
71 KOG0036 Predicted mitochondria 60.3 34 0.00074 37.2 7.9 71 292-375 73-143 (463)
72 PF13405 EF-hand_6: EF-hand do 58.7 9.6 0.00021 25.1 2.4 26 352-377 2-27 (31)
73 PF06512 Na_trans_assoc: Sodiu 57.7 2.2 4.9E-05 43.5 -1.3 24 401-424 216-239 (239)
74 cd00252 SPARC_EC SPARC_EC; ext 57.4 48 0.001 29.8 7.3 62 306-376 45-106 (116)
75 KOG0510 Ankyrin repeat protein 57.3 41 0.00089 39.8 8.4 121 158-282 587-709 (929)
76 KOG3533 Inositol 1,4,5-trispho 53.3 1.1E+02 0.0023 38.4 11.0 49 208-256 2399-2447(2706)
77 PF12763 EF-hand_4: Cytoskelet 50.9 68 0.0015 28.2 7.1 62 309-378 10-71 (104)
78 cd05030 calgranulins Calgranul 50.8 1.1E+02 0.0024 25.8 8.2 58 323-381 24-82 (88)
79 KOG0500 Cyclic nucleotide-gate 50.0 26 0.00057 38.9 5.1 106 136-254 32-150 (536)
80 KOG0031 Myosin regulatory ligh 49.3 87 0.0019 29.5 7.6 69 311-379 34-130 (171)
81 KOG0034 Ca2+/calmodulin-depend 48.4 41 0.00088 33.0 5.8 66 309-376 104-173 (187)
82 PF01007 IRK: Inward rectifier 47.9 1.1E+02 0.0024 33.0 9.6 65 594-663 79-143 (336)
83 cd05024 S-100A10 S-100A10: A s 45.8 1.4E+02 0.0031 25.5 7.9 57 323-380 21-78 (91)
84 PLN02964 phosphatidylserine de 40.6 66 0.0014 37.8 6.8 63 311-378 181-243 (644)
85 PF07885 Ion_trans_2: Ion chan 38.3 2.2E+02 0.0047 23.1 9.2 56 598-660 23-78 (79)
86 PF07885 Ion_trans_2: Ion chan 37.6 95 0.0021 25.3 5.7 43 239-286 3-45 (79)
87 KOG0036 Predicted mitochondria 33.9 1.5E+02 0.0033 32.5 7.7 64 307-374 12-75 (463)
88 KOG0377 Protein serine/threoni 30.9 2E+02 0.0043 31.8 7.9 76 307-382 462-579 (631)
89 KOG0031 Myosin regulatory ligh 29.9 2E+02 0.0043 27.3 6.7 63 308-375 100-162 (171)
90 PRK12309 transaldolase/EF-hand 29.9 1.1E+02 0.0024 33.7 6.2 53 308-378 333-385 (391)
91 KOG0038 Ca2+-binding kinase in 29.5 2.7E+02 0.0059 26.0 7.5 62 310-375 109-174 (189)
92 smart00054 EFh EF-hand, calciu 28.4 58 0.0013 19.4 2.4 25 352-376 2-26 (29)
93 COG5249 RER1 Golgi protein inv 27.3 1.6E+02 0.0035 27.2 5.6 23 644-666 65-87 (180)
94 PF10669 Phage_Gp23: Protein g 26.0 1.7E+02 0.0038 25.0 5.2 30 631-660 13-42 (121)
95 KOG1688 Golgi proteins involve 23.7 1.4E+02 0.0029 28.7 4.6 14 645-658 72-85 (188)
96 KOG0037 Ca2+-binding protein, 22.9 5.1E+02 0.011 26.0 8.6 67 309-380 124-190 (221)
97 KOG0499 Cyclic nucleotide-gate 22.6 8.3E+02 0.018 28.4 11.1 138 136-284 264-423 (815)
98 PLN02964 phosphatidylserine de 21.8 2.6E+02 0.0056 33.0 7.5 64 308-379 142-208 (644)
99 PF11044 TMEMspv1-c74-12: Plec 21.2 2E+02 0.0042 21.0 3.9 27 640-666 7-33 (49)
No 1
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-61 Score=575.60 Aligned_cols=472 Identities=22% Similarity=0.337 Sum_probs=378.8
Q ss_pred HHHHHHHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhccHHH
Q 005107 138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (714)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~~~l 217 (714)
.|.+++.+|++|+++|+++.|...|++|.||++|++++++++++++.+.. .....+.+|++|+|||+|.+++.+++
T Consensus 877 ~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~m 952 (1592)
T KOG2301|consen 877 ADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGM 952 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 39999999999999999999999999999999999999999999998865 23467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------------------------ccccc
Q 005107 218 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-----------------------------------QGNMV 262 (714)
Q Consensus 218 r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~-----------------------------------~~~~~ 262 (714)
|.++.++.+++|.|+|+++++++++++||++|+|+|+|+. +.+.+
T Consensus 953 r~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~n 1032 (1592)
T KOG2301|consen 953 RVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFN 1032 (1592)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccc
Confidence 9999999999999999999999999999999999999741 02356
Q ss_pred ccchHHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhhccccCcccC----HHHHHHHHH--
Q 005107 263 FTSFGTTLYQMFVLFTTSNNPDVWIPAYNFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLN----KEQCIKLFE-- 336 (714)
Q Consensus 263 F~~~~~s~~~lfvl~TtenwpdVm~pay~f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~~----~~~~~~~~~-- 336 (714)
|||++++++++|+..|-+||||+|+-+++..+.- .++..+ .......+-
T Consensus 1033 fDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~-------------------------~~p~~~~~~~~~~ffvifii~ 1087 (1592)
T KOG2301|consen 1033 FDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVN-------------------------AQPILESNLYMYLFFVIFIII 1087 (1592)
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccC-------------------------cCCcccccccceeehhhhhhH
Confidence 9999999999999999999999997777621100 000000 000000000
Q ss_pred ----HhhhhccCCCCC-hHHHHHHHhhhcccccccCChhHHHHHHHHHHhhhcccCcchhhccCCccccchHHHHHHHhh
Q 005107 337 ----ELNKYRTLPNIS-REEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFI 411 (714)
Q Consensus 337 ----~l~~~~~~~~~s-~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~~~~k~~~~~~~~~~p~~~~~~~r~~~~~iv 411 (714)
.++-+-..--.+ +++.+..... ..+.++.+..+...+++.++.+.+. | ...+++++.++.++
T Consensus 1088 ~~ff~lnlFvgvII~nf~~q~~~~~~~-------~~~~eq~~~~~~~~~l~sk~~~r~i-----p-r~~~~~q~~~~~~v 1154 (1592)
T KOG2301|consen 1088 GSFFTLNLFVGVIIDNFNQQKGKAGGT-------FMTEEQKKRLNAAKKLGSKPPQRPI-----P-RPRNKLQGLVFDLV 1154 (1592)
T ss_pred HhhhheeeeEEEEEechhhhchhhhhh-------hhhHHHHHHHHHHHHhcCCCCCCCC-----C-CCcchhhhHHHHHH
Confidence 000000000000 0000000000 1223333334433333333222221 2 33567899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHH
Q 005107 412 RSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVI 491 (714)
Q Consensus 412 ~~~~f~~~i~~iIlln~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~ 491 (714)
.++.|++.+..++.+|.+.++++++ .++......+.+++.+|+.+|++|+++|++|.|++.||+++||.||+++++++
T Consensus 1155 ~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlS 1232 (1592)
T KOG2301|consen 1155 TSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTILS 1232 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeeeHh
Confidence 9999999999999999999999876 56666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005107 492 VIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIF 571 (714)
Q Consensus 492 ~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF 571 (714)
+++.+++...+. +.++....++.|++|+.|++|+++..+++|.+..|++.|+|++.++++++++++++||++||++|
T Consensus 1233 Iv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~F 1309 (1592)
T KOG2301|consen 1233 IVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLF 1309 (1592)
T ss_pred HHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998877653 22345567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHHHh--------------hhC-Ccchhhhh
Q 005107 572 GGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE--------------LTG-TAWTLAYF 636 (714)
Q Consensus 572 ~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~--------------~~g-~~~~~iyF 636 (714)
|.+..+ +. ..++||.+|++|++.||++.|+|||+++|.++.. .|| .+++.+||
T Consensus 1310 g~Vkl~-~i-----------~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF 1377 (1592)
T KOG2301|consen 1310 GYVKLG-GI-----------NDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYF 1377 (1592)
T ss_pred hheecc-cc-----------CCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehh
Confidence 999876 11 1148999999999999999999999999999765 366 57899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005107 637 VSFYLITVLLLLNLVIAFVLEAFFAEMELESS 668 (714)
Q Consensus 637 i~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~ 668 (714)
++|+++++++++|||||||+|||+..+++.++
T Consensus 1378 ~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1378 VSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 99999999999999999999999999988773
No 2
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-54 Score=473.26 Aligned_cols=476 Identities=20% Similarity=0.277 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHhhHhheeccc----ccccccccccchhhHHHHHHHHHHHHhhhcCCcC----CccchhhhehhhhHHHH
Q 005107 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA----FNFLPLRIAPYIRVVFF 210 (714)
Q Consensus 139 e~~~~~if~~e~~~k~~~~g~----~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~----~~~~~~r~~R~lR~~~l 210 (714)
..++++||++|+.+|+++.|+ ..|+++.||.+|.+++.++++|++++... ..+ ..++++|.+|.+||+|.
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~as--a~g~kILgVlrvLRlLRtlRpLRv 1239 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQAS--AGGAKILGVLRVLRLLRTLRPLRV 1239 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHhhHHHH
Confidence 589999999999999997664 56999999999999999999999988653 112 13568888899999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------------ccccccc
Q 005107 211 ILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ-------------------------GNMVFTS 265 (714)
Q Consensus 211 i~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~-------------------------~~~~F~~ 265 (714)
+++.++++.++..+.++++.|+|+.++++-|+++|+|+|+|||+|+.. ..-+|+|
T Consensus 1240 iSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdn 1319 (1956)
T KOG2302|consen 1240 ISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDN 1319 (1956)
T ss_pred HhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccch
Confidence 999999999999999999999999999999999999999999996410 1346999
Q ss_pred hHHHHHHHHHHHhcCCCCccchhhhh-------------------hHHHHHHHHHHHHHHHHHhHHHHhhhhccccCccc
Q 005107 266 FGTTLYQMFVLFTTSNNPDVWIPAYN-------------------FKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFL 326 (714)
Q Consensus 266 ~~~s~~~lfvl~TtenwpdVm~pay~-------------------f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~ 326 (714)
.++|+++||++.|-++|.+|||...+ |..++. .-+|-++.-
T Consensus 1320 lgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfll--------------IvsffVlnm------ 1379 (1956)
T KOG2302|consen 1320 LGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLL--------------IVSFFVLNM------ 1379 (1956)
T ss_pred HHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHH--------------HHHHHHHHH------
Confidence 99999999999999999999986655 222221 111111100
Q ss_pred CHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHhhhcccCcchhhccCCccccchHHHH
Q 005107 327 NKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEK 406 (714)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~~~~k~~~~~~~~~~p~~~~~~~r~~ 406 (714)
-.....+.+.+-+. +..+++.... | ++....+.++.++..+.++... -++.|+.
T Consensus 1380 ---fVgvvvenfhKcrq--hqe~EeArRr---------------e-EKrLrrlekkrR~Aq~kpyyse-----yt~~rrl 1433 (1956)
T KOG2302|consen 1380 ---FVGVVVENFHKCRQ--HQEAEEARRR---------------E-EKRLRRLEKKRRAAQRKPYYSE-----YTMTRRL 1433 (1956)
T ss_pred ---HHHHHHHHHHHHHH--HHHHHHHHHH---------------H-HHHHHHHHHHHHhccCCccccc-----ccHHHHH
Confidence 01112222222111 0001111000 0 0111222223232222222111 2578999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHH
Q 005107 407 LKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFL 486 (714)
Q Consensus 407 ~~~iv~~~~f~~~i~~iIlln~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~ 486 (714)
++....+.|-+.++.++|.+|++.+..+.+ .++...+..+.+-++.|+++|+.|+++|.++.|+++||++.||.+|+.
T Consensus 1434 Ih~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldla 1511 (1956)
T KOG2302|consen 1434 IHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLA 1511 (1956)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHH
Confidence 999999999999999999999999999876 566677788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 487 VTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSL 566 (714)
Q Consensus 487 v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAii 566 (714)
+++.++.+..+.-+..+ -.+-.+..++|+.|++|+.|++|+++.-.+||.++.|+++++|.++++.++..+++++||.+
T Consensus 1512 ivlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaal 1590 (1956)
T KOG2302|consen 1512 IVLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAAL 1590 (1956)
T ss_pred HHHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 99998887666543221 12223678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHHHhhhC-------CcchhhhhhHH
Q 005107 567 GVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-------TAWTLAYFVSF 639 (714)
Q Consensus 567 G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g-------~~~~~iyFi~f 639 (714)
|+++||... ||++.++..... +..|.||+-|++|||++.|++||+.||-+..+.|. ...+.+||++|
T Consensus 1591 gvelfg~le--c~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsf 1664 (1956)
T KOG2302|consen 1591 GVELFGKLE--CNEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSF 1664 (1956)
T ss_pred HHHHhcccc--cCCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhh
Confidence 999999874 554443333322 47899999999999999999999999999876653 35689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005107 640 YLITVLLLLNLVIAFVLEAFFAEMELESSEKC 671 (714)
Q Consensus 640 ~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~~ 671 (714)
.+.+.++++|+.|||++....+..++.++.++
T Consensus 1665 vltaqfvlvnvvvavlmkhleesnkea~edae 1696 (1956)
T KOG2302|consen 1665 VLTAQFVLVNVVVAVLMKHLEESNKEAQEDAE 1696 (1956)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhchhhhhhhh
Confidence 99999999999999999988887666555443
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-53 Score=508.62 Aligned_cols=512 Identities=18% Similarity=0.237 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhccH
Q 005107 136 LVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (714)
Q Consensus 136 ~~~e~~~~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~~ 215 (714)
.+.|.+++.+|.+|+.+|+++.|++.||+..||++|+++++..+++... ......+++|.+|++|.+|+.+.++
T Consensus 476 ~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~~------~~~~g~svLr~frllRIfkl~k~wp 549 (1592)
T KOG2301|consen 476 YLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELLL------KNVYGLSVLRSFRLLRIFKLIKSWP 549 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhcc------cchHHHHHHHHHHHHHHHHHHHhhH
Confidence 4459999999999999999999999999999999999998866655541 1123567999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccchHHHHHHHHHHHhcCCCCccchhhhh
Q 005107 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG----NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYN 291 (714)
Q Consensus 216 ~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~----~~~F~~~~~s~~~lfvl~TtenwpdVm~pay~ 291 (714)
.+|.+++++.++.+.++++++++++++++||++|||+|++.... ..+|+++++|++++|+ .|+|+|.|+|+.+..
T Consensus 550 ~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~ 628 (1592)
T KOG2301|consen 550 TLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCME 628 (1592)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999976432 2479999999999999 999999999987665
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHhHHHHhhhhccccCcccCHHH--HHHHHHHhhhh-----------c
Q 005107 292 ----------------FKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQ--CIKLFEELNKY-----------R 342 (714)
Q Consensus 292 ----------------f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~~~~~--~~~~~~~l~~~-----------~ 342 (714)
+.++..-++..+......+. + +..+.++++.....+ ..+.....+.. .
T Consensus 629 ~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~--~-el~~~e~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 705 (1592)
T KOG2301|consen 629 AAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFES--D-ELKKPEQLKEREALQLARSRIPKGLRVVKAFITRPFMAAM 705 (1592)
T ss_pred HhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchh--h-hcCChhhhhhHHhhhhhhhhhhhhhhhHhhhhcchhhHhh
Confidence 22332222221100000000 0 000000000000000 00000000000 0
Q ss_pred cCCCCChH--HHHHHHhhh------------------------------------cccccccCChhHHH-----HHHHHH
Q 005107 343 TLPNISRE--EFELIFDEL------------------------------------DDTHDFKINLDEFA-----DLCNAI 379 (714)
Q Consensus 343 ~~~~~s~~--~~~~l~~~l------------------------------------d~~~~~~~~~~ef~-----~l~~~~ 379 (714)
..+...+. ..+....+. +...+.....++.. ...+..
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 785 (1592)
T KOG2301|consen 706 RKMPKVRDSAVDHSLEIESNITEDEEFPKRIMKSNGSSRTSGSLSENDDASFISRSTKKAPKENAEQGEIEIRKLQLKRQ 785 (1592)
T ss_pred cccchhhhhhhhhchhcccccchhcccccccccccccccccccccchhhhhcccccccccccccccccccchhhhhhhhh
Confidence 00000000 000000000 00000000000000 000000
Q ss_pred H-------------hhhccc--------Ccchhhc-cCCccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhcccc
Q 005107 380 A-------------LRFQKE--------DVPSCFE-NLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTL 437 (714)
Q Consensus 380 ~-------------~~~~k~--------~~~~~~~-~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iIlln~i~l~~~~~~ 437 (714)
. ....++ ..++... ..+ .+.+ +|+.|+.++.|.+|+.++..+|+++.++.+.+.+.
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~ 863 (1592)
T KOG2301|consen 786 EAEETRNRIEEDLREFCKKEVCSKYGSQCDGSVDSAKGK-SWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVR 863 (1592)
T ss_pred hhhhhcccccccchhhhhhccccccccccCccccccccc-cccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcc
Confidence 0 000000 0000000 111 2345 99999999999999999999999999999998775
Q ss_pred chhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHH
Q 005107 438 DIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYL 517 (714)
Q Consensus 438 ~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~l 517 (714)
.++.......+.+.|++|+.+|++|+++|++|+|+.-|+++.||+.|+++++++++..+.... ....++.+
T Consensus 864 ~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~---------~~~~ik~l 934 (1592)
T KOG2301|consen 864 GENRPTINGILEYADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK---------ILSLIKSL 934 (1592)
T ss_pred hhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh---------hhhHHHHH
Confidence 555555677889999999999999999999999998899999999999999999999876543 23467999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCC-----------c
Q 005107 518 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEET-----------D 586 (714)
Q Consensus 518 r~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~-----------~ 586 (714)
|.+|+||++|.+.+++++|.++..++.++|++++++++.++++++||++|+++|+|+.+.|++...++ +
T Consensus 935 r~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~ 1014 (1592)
T KOG2301|consen 935 RILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYE 1014 (1592)
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999998765431 1
Q ss_pred ccCc-----c---ccccccCChhHHHHHHHHHhhccCHHHHHHHHHhhhC---------CcchhhhhhHHHHHHHHHHHH
Q 005107 587 LADD-----D---YLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG---------TAWTLAYFVSFYLITVLLLLN 649 (714)
Q Consensus 587 ~~~~-----~---y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g---------~~~~~iyFi~f~ll~~~i~ln 649 (714)
++.. - -...||||+++|+++||++.|.+||.++|+..+|.+| +.+.++||+.|++++.++.+|
T Consensus 1015 ~~~~~~~~~~~w~n~~~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~ln 1094 (1592)
T KOG2301|consen 1015 CESLPRAPRRWWNNRKFNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLN 1094 (1592)
T ss_pred hhhhhhccceEEeccccccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhhee
Confidence 1111 0 0348999999999999999999999999999998876 467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 005107 650 LVIAFVLEAFFAEMELESS 668 (714)
Q Consensus 650 LfvavI~e~f~~~~~~~~~ 668 (714)
+|+|+|++||+++.++.-.
T Consensus 1095 lFvgvII~nf~~q~~~~~~ 1113 (1592)
T KOG2301|consen 1095 LFVGVIIDNFNQQKGKAGG 1113 (1592)
T ss_pred eeEEEEEechhhhchhhhh
Confidence 9999999999998877766
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-53 Score=459.20 Aligned_cols=555 Identities=19% Similarity=0.265 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhccHHHH
Q 005107 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLR 218 (714)
Q Consensus 139 e~~~~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~~~lr 218 (714)
+.+++-.|..|+.+|....|.-.|.|||-|++|-++++++.-+++. .......++|.+|.+|++++++.++.+|
T Consensus 657 n~vftsmfalEm~lkla~~g~f~y~rnPynifdgiiv~is~wEiVg------qq~GglsvlrtFrllrvlkLvrf~palq 730 (1956)
T KOG2302|consen 657 NNVFTSMFALEMDLKLAARGFFRYHRNPYNIFDGIIVAISHWEIVG------QQDGGLSVLRTFRLLRVLKLVRFSPALQ 730 (1956)
T ss_pred hhhhHHHHHHHHHHhhhhccchhccCCCcccCCCeEEEEEeeEeec------ccCCCcCCCcHHHHHHHHHHHhhhHHHH
Confidence 5678999999999999999988899999999999998887766522 3334678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cccccccccchHHHHHHHHHHHhcCCCCccchh
Q 005107 219 DTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED----------TVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIP 288 (714)
Q Consensus 219 ~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~----------~~~~~~~F~~~~~s~~~lfvl~TtenwpdVm~p 288 (714)
+-+..+.++....+--..++++++++|||+||.+||. +.++..+|+++..+..+.|+++|.|+|+-|++.
T Consensus 731 rqlvvl~ktmdnvAtfctllmLfififsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLyn 810 (1956)
T KOG2302|consen 731 RQLVVLMKTMDNVATFCTLLMLFIFIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYN 810 (1956)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhhc
Confidence 9999999888888888889999999999999999983 344567899999999999999999999999965
Q ss_pred hhh-----------------------------------------------------------------------------
Q 005107 289 AYN----------------------------------------------------------------------------- 291 (714)
Q Consensus 289 ay~----------------------------------------------------------------------------- 291 (714)
.+.
T Consensus 811 gmastSswa~lyfvAlmtfGnYvlfnllvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~~ 890 (1956)
T KOG2302|consen 811 GMASTSSWAPLYFVALMTFGNYVLFNLLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHHH 890 (1956)
T ss_pred CccccCCcchhHHHHhhhccceeeeccchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCcccc
Confidence 443
Q ss_pred --------------------------------------------------hHHHHHHHH-------------HHHHHHHH
Q 005107 292 --------------------------------------------------FKSQLAKQV-------------SEMDRMRR 308 (714)
Q Consensus 292 --------------------------------------------------f~~~l~~~v-------------~~~~~~r~ 308 (714)
+-.+-.+.. +.+...|+
T Consensus 891 t~~~H~~~r~sl~~hl~~~~aasP~~~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsRr 970 (1956)
T KOG2302|consen 891 TPNGHLRSRLSLGHHLAHQHAASPHPGETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSRR 970 (1956)
T ss_pred CCCCCcccccCCCCccccccCCCCCCCCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhcc
Confidence 000000000 00000011
Q ss_pred HhHH---------HHhh-hhccc-cCcc----cCHH-------HHHHHHHHhhhhc-cCC-------------------C
Q 005107 309 RTLG---------KAFN-LIDNY-NVGF----LNKE-------QCIKLFEELNKYR-TLP-------------------N 346 (714)
Q Consensus 309 ~~l~---------~af~-~l~~~-~~~~----~~~~-------~~~~~~~~l~~~~-~~~-------------------~ 346 (714)
.... .+.. .|..+ +++. .+.. -.....+....+. ..| +
T Consensus 971 ss~~qslkh~~~~ge~~SlLsgeygq~ts~~~~~~~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~rdcngr 1050 (1956)
T KOG2302|consen 971 SSWNQSLKHQDPSGEYESLLSGEYGQSTSQLSAPHGSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHRDCNGR 1050 (1956)
T ss_pred cchhhhcccCCCcchhhhhhccccccccccccCCCCCccCCCCCccccccccccccccCCCcccccccCCCccccccCCc
Confidence 0000 0111 11111 0000 0000 0000000000000 000 0
Q ss_pred CChHHHHHHHhh-hcccccccCChhHHH-HHHHHHHhhhcccCcc-----hhhccCCccccchHHHHHHHhhcchhHHHH
Q 005107 347 ISREEFELIFDE-LDDTHDFKINLDEFA-DLCNAIALRFQKEDVP-----SCFENLPSIYHSPFSEKLKAFIRSTKFGYM 419 (714)
Q Consensus 347 ~s~~~~~~l~~~-ld~~~~~~~~~~ef~-~l~~~~~~~~~k~~~~-----~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~ 419 (714)
..... ...+.. .++.++.....+|=+ ..|....+...+..+. +.|+++--..++++|..||+++.|+.|+.+
T Consensus 1051 v~s~~-k~v~t~~~s~r~d~d~~~eEg~~~k~~r~r~~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~v 1129 (1956)
T KOG2302|consen 1051 VTSMS-KDVFTQDISTRHDEDEGKEEGQFQKCKRVRKQITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTV 1129 (1956)
T ss_pred cchhh-hhhhccCCCCccccccchhcchhHHHHhhhhhhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhhe
Confidence 00000 011111 122233333233222 2233322222222111 123332112268899999999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhcchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcc----cccccccccchhHHHHHHHHHH
Q 005107 420 ISIILIVNLVAVIVETTLDIQESSLQSV-WQEVEFVFGWIYVLEMALKIYSYGF----ENYWRDGQNRFDFLVTWVIVIG 494 (714)
Q Consensus 420 i~~iIlln~i~l~~~~~~~~~~~~~~~~-~~~~~~~f~~iF~~E~ilKi~a~G~----~~y~~~~wn~fD~~v~i~~~i~ 494 (714)
+.++|.+||+.++++++-.. +.+.+.+ +...+++|+.||++|+.+|++|+|+ .+|+++.||.+|++++.+++++
T Consensus 1130 Vl~~IfLNcVtialerp~i~-~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviD 1208 (1956)
T KOG2302|consen 1130 VLFFIFLNCVTIALERPAIV-EGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVID 1208 (1956)
T ss_pred ehhhhhhhhHHHHhcccccc-cCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999997433 3333333 3556799999999999999999996 7999999999999999999999
Q ss_pred HHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 005107 495 ETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGI 574 (714)
Q Consensus 495 ~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~ 574 (714)
.++......+. .-..++|++|++|.+|++|.+.+.++++.++.||..+++.+.+++++.+.++++|+|+|++||.|+
T Consensus 1209 ilvs~asa~g~---kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgk 1285 (1956)
T KOG2302|consen 1209 ILVSQASAGGA---KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGK 1285 (1956)
T ss_pred HHHHHhhhhhH---HHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98876655432 234678889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCC-----CCCcccCcccc----ccccCChhHHHHHHHHHhhccCHHHHHHHHHhhh---------CCcchhhhh
Q 005107 575 VNAGNAKL-----EETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT---------GTAWTLAYF 636 (714)
Q Consensus 575 ~~~~~~~~-----~~~~~~~~~y~----~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~---------g~~~~~iyF 636 (714)
.+.|.... +.++|....|. ..||||.++|+++||.+.|.+||..||++-.+.. +++|..+||
T Consensus 1286 fy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYf 1365 (1956)
T KOG2302|consen 1286 FYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYF 1365 (1956)
T ss_pred ceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHH
Confidence 99985433 24567777776 5899999999999999999999999999866553 369999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hccCCCchhhhc-ccccc---hhhhhHHHHHHHHH
Q 005107 637 VSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE-EDKDGEPRERRR-RVGTK---TRSQKVDVLLHHML 704 (714)
Q Consensus 637 i~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~k---~r~~~v~~ll~~~~ 704 (714)
|+|+++..++++|+||++++|||.+..++.++++... +++.....++++ ..+.| ..+.+.+.+.++++
T Consensus 1366 IsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~kpyyseyt~~rrlIh~~c 1438 (1956)
T KOG2302|consen 1366 ISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQRKPYYSEYTMTRRLIHSKC 1438 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHh
Confidence 9999999999999999999999999888877665432 222222223322 22233 45556666666555
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.88 E-value=2.8e-22 Score=198.58 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--cccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHH
Q 005107 450 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 527 (714)
Q Consensus 450 ~~~~~f~~iF~~E~ilKi~a~G~--~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lr 527 (714)
++|.++.++|++|.++|+.+.|+ ++|++++||++|+++++..++..+........ ....+++.+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 57899999999999999999998 89999999999999988876665543222110 013568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHH
Q 005107 528 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 607 (714)
Q Consensus 528 li~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tL 607 (714)
+++..+.++....++.++.+.+..++.+++++++.||++|+++|++....+++... +..++.+...+|++++.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTW--DSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------S--S----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheeccccccccccccc--cccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999876543211 1112223357999999999999
Q ss_pred HHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 005107 608 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 655 (714)
Q Consensus 608 f~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI 655 (714)
++++|++||++++.... ..++.++.+||+++.++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998766 333478899999999999999999999986
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.9e-21 Score=204.20 Aligned_cols=246 Identities=17% Similarity=0.202 Sum_probs=198.4
Q ss_pred chHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHhhccccchhcchH----------------HHHHHHHHHHHHH
Q 005107 401 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESSL----------------QSVWQEVEFVFGW 457 (714)
Q Consensus 401 ~~~r~~~~~iv~~~-------~f~~~i~~iIlln~i~l~~~~~~~~~~~~~----------------~~~~~~~~~~f~~ 457 (714)
..+|++++++++.| .|..+..+.|+++++.+|+.|.++-+.... ++.+.++|.+|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 35888999998764 588889999999999999988765443222 2458999999999
Q ss_pred HHHHHHHHHHHhhcc-cccccccccchhHHHHHHHHHHHHHhhcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 458 IYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTF-LSNGEWIRYLLLARMLRLIRLLMHVQQY 535 (714)
Q Consensus 458 iF~~E~ilKi~a~G~-~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~-~~~~~~lr~lr~lR~lR~lrli~~~~~l 535 (714)
+|++|+++|++...- .+|++++.|++|++.++.-.+...++.....+..- -..+.++|++|++|++|++||.|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999997753 68999999999999999999888877555321111 1233688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccC
Q 005107 536 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 615 (714)
Q Consensus 536 r~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~ 615 (714)
|.+..|+.+|.+.++-++++ -++|+-+|+...|.-+.+.+ ..+|.++|.++++....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLllf--------L~~GI~iFStlvY~~Ek~~~----------~~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLLLF--------LAVGIVIFSTLVYFAEKDEP----------DTKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhcCC----------CCCCccccchhheeeEEEeeec
Confidence 99999999999997554444 44788888888776432222 2469999999999888888876
Q ss_pred HHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005107 616 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 671 (714)
Q Consensus 616 W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~~ 671 (714)
+. |+.+.++.+....+-.++++++++.|+|.+|++||.+.+.+.++.++
T Consensus 394 YG-------Dm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 394 YG-------DMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred cc-------CccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 54 55556788889999999999999999999999999999988887654
No 7
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.80 E-value=3.5e-18 Score=197.14 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----ccccccccccchhHHHHHHHHHHHHHhhcC---------------------
Q 005107 448 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 501 (714)
Q Consensus 448 ~~~~~~~f~~iF~~E~ilKi~a~G-----~~~y~~~~wn~fD~~v~i~~~i~~i~~~~~--------------------- 501 (714)
++++-.+|.++|+.+-+.+|...| ..+||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 356666777888888888887654 368999999999999999888877653210
Q ss_pred ----------CCCC----cccch-------hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 502 ----------PNGQ----TFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 556 (714)
Q Consensus 502 ----------~~~~----~~~~~-------~~----~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll 556 (714)
++.. ..+.+ .+ +.-++-.++++|++|+++.+++++.+..||..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 01 12234567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHHHhhh--CCcchhh
Q 005107 557 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT--GTAWTLA 634 (714)
Q Consensus 557 ~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~--g~~~~~i 634 (714)
+++++.||++|..+||... .+|.+|..|+.|||++++++.+ .++++..... ...++.+
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhhcccchHHHH
Confidence 9999999999999999873 3799999999999999998754 3343333222 2367899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005107 635 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 666 (714)
Q Consensus 635 yFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~ 666 (714)
||++|+++..+++||||||+|.++|.+..+..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999986553
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.75 E-value=8e-19 Score=177.21 Aligned_cols=247 Identities=14% Similarity=0.182 Sum_probs=190.5
Q ss_pred cchHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHHhhccccchhcc------------------------------
Q 005107 400 HSPFSEKLKAFIRS-------TKFGYMISIILIVNLVAVIVETTLDIQES------------------------------ 442 (714)
Q Consensus 400 ~~~~r~~~~~iv~~-------~~f~~~i~~iIlln~i~l~~~~~~~~~~~------------------------------ 442 (714)
++.++|.++-+.+- +....+..++|+++++..|++|-+...+.
T Consensus 170 ~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 249 (507)
T KOG1545|consen 170 RNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDT 249 (507)
T ss_pred cchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccccc
Confidence 67888888877753 34567888999999999999986532211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccccchhHHHHHHHHHHHHHhhcCCCCCc----ccchhhHHHHH
Q 005107 443 SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRYL 517 (714)
Q Consensus 443 ~~~~~~~~~~~~f~~iF~~E~ilKi~a~G~-~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~----~~~~~~~lr~l 517 (714)
...+.+.++|..|.++|++|.++|.+++.- ..|+++..|++|++.++..++.+...++...+.+ ..-+..++|++
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRVi 329 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVI 329 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHH
Confidence 011345789999999999999999999975 4689999999999999999988776655432111 11134689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCcccccccc
Q 005107 518 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 597 (714)
Q Consensus 518 r~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF 597 (714)
|+.|++|++||-|++++++.+.+|+..+.+.+.-+ +.|-.+|+.||+..+|..+.+.. ..+|
T Consensus 330 RLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL--------IFFlfIgviLFsSavYFAEade~----------~S~F 391 (507)
T KOG1545|consen 330 RLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL--------IFFLFIGVILFSSAVYFAEADEP----------ESHF 391 (507)
T ss_pred HHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhceeeeeecCCC----------ccCC
Confidence 99999999999999999999999999999986432 33444899999999987543322 2689
Q ss_pred CChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005107 598 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 671 (714)
Q Consensus 598 ~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~~ 671 (714)
.+++.|+++....||+-|+.|+ ++....+--..+.+.+++++.+.|.|.||+.||...|..+.+.++
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm-------~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDM-------VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred CcCcccceEEEEEEEeeccccc-------eecccCceehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 9999999988888888876655 333344555678888999999999999999999998766554443
No 9
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.1e-18 Score=172.99 Aligned_cols=239 Identities=16% Similarity=0.194 Sum_probs=163.0
Q ss_pred hHHHHHHhHHHHHcCCC---CChhhccCCCchhhHHHHHHHH--HHHHHH-----HHHHHHHHHhhhccCCcccccC---
Q 005107 43 PYQKAAALVDLAEDGIG---LPEEILDRSSFESSAKFYFIFI--KFDYIW-----SLNYFALIVLNFLEKPLWCAKT--- 109 (714)
Q Consensus 43 ~~~~a~~~v~~a~~~~~---~~~~~~~~~~~~~~~~~~~~y~--~~~~~~-----~l~~~~ll~la~~e~p~~~~~~--- 109 (714)
=||++.+..+......+ .+++.++...|+++.|+..-|- +...+. ++++.+-++..|+|+-.....+
T Consensus 143 FyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~ 222 (507)
T KOG1545|consen 143 FYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDL 222 (507)
T ss_pred HHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccc
Confidence 36666666665554443 3344568889999999888883 333322 3344555678899987776543
Q ss_pred -CCCc--------ccCCCccccccCCCCCcchhhHHHHHHHHHHHHHHHhhHhheeccccc-ccccccccchhhHHHHHH
Q 005107 110 -GVGT--------YSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILV 179 (714)
Q Consensus 110 -~~~~--------~~~~~~~~~~~~~~p~~~~~~s~~~e~~~~~if~~e~~~k~~~~g~~~-f~~~~~n~~d~~~~i~~~ 179 (714)
+..+ .|.+.++....+..-+.+.+ +++|..|+++|++|+++|+.+++.+. |+||..|++|++.++.++
T Consensus 223 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPF--FiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyF 300 (507)
T KOG1545|consen 223 TGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPF--FIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYF 300 (507)
T ss_pred cccccccCCCcccCCCCCcccccccccccCCch--HhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111221112222233344 57799999999999999999998877 999999999999999999
Q ss_pred HHHHHHhhhcCCcC------CccchhhhehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005107 180 ADFLVYGLYLSPIA------FNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF 253 (714)
Q Consensus 180 i~~~~~~~~~s~~~------~~~~~~r~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF 253 (714)
+.+...+...+.++ ..+.++|+.|+.|++|.++-+ ...+-++.+-+++++-+.-+.|+.+|+++ |+.||
T Consensus 301 itlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLS-RHSkGLQILGqTl~aSmrElgLLIFFlfI----gviLF 375 (507)
T KOG1545|consen 301 ITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLS-RHSKGLQILGQTLRASMRELGLLIFFLFI----GVILF 375 (507)
T ss_pred HHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeec-cccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 99988876532121 134577888888887777533 23344455566666666666666666666 77777
Q ss_pred c------ccccccccccchHHHHHHHHHHHhcCCCCccchhh
Q 005107 254 E------DTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPA 289 (714)
Q Consensus 254 ~------~~~~~~~~F~~~~~s~~~lfvl~TtenwpdVm~pa 289 (714)
+ +.++.+.+|.++++|||+..|.|||.++.|. .|.
T Consensus 376 sSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm-~P~ 416 (507)
T KOG1545|consen 376 SSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDM-VPV 416 (507)
T ss_pred hceeeeeecCCCccCCCcCcccceEEEEEEEeeccccc-eec
Confidence 6 3455678899999999999999999999995 344
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.63 E-value=5.6e-16 Score=153.30 Aligned_cols=154 Identities=20% Similarity=0.305 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHhhHhheeccc--ccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhcc
Q 005107 137 VYEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (714)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~~~g~--~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~ 214 (714)
++|.+|.++|++|+++|++..|+ +.|++++||++|++.+++..++.+.............+.+|++|.+|++++++..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccc
Confidence 35999999999999999998897 7899999999999999998877666533100001135688899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------ccccccchHHHHHHHHHHHhcC
Q 005107 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------------GNMVFTSFGTTLYQMFVLFTTS 280 (714)
Q Consensus 215 ~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~--------------~~~~F~~~~~s~~~lfvl~Tte 280 (714)
+.+++.+.++.++++.+..++++++++++.||+.|+++|+++.. +...|+++++|++++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 99999999999999999999999999999999999999997531 2456999999999999999999
Q ss_pred CCCccchhhh
Q 005107 281 NNPDVWIPAY 290 (714)
Q Consensus 281 nwpdVm~pay 290 (714)
+|+|++.+.+
T Consensus 161 ~~~~~~~~~~ 170 (200)
T PF00520_consen 161 GWGDVMPSCM 170 (200)
T ss_dssp TCCCCHHHHH
T ss_pred Cccccccccc
Confidence 9999997754
No 11
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.57 E-value=4e-14 Score=151.17 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhhHhheeccccc-ccccccccchhhHHHHHHHHHHHHhhhc------CCcCCccchhhhehhhhHHH
Q 005107 137 VYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVF 209 (714)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~~~g~~~-f~~~~~n~~d~~~~i~~~i~~~~~~~~~------s~~~~~~~~~r~~R~lR~~~ 209 (714)
++|.+|.++|++|.++|+...+.+. |+|++-|++|++.++...+++.+..... ...+...+++|++|++|.++
T Consensus 244 ~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~K 323 (477)
T KOG3713|consen 244 YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFK 323 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4599999999999999999776654 9999999999999999999988876532 11112346777777778888
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhcCCCCccchhh
Q 005107 210 FILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPA 289 (714)
Q Consensus 210 li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lfvl~TtenwpdVm~pa 289 (714)
+-+.+.++|.+-.+++++.++++-+++++..-+.+||-+.+.+-++. ..+.|+|||.++|+.-|.|||-|+.|+ +|.
T Consensus 324 LaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~--~~~~FtSIPa~~WWaiVTMTTVGYGDm-~P~ 400 (477)
T KOG3713|consen 324 LARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE--PDTKFTSIPAGFWWAVVTMTTVGYGDM-VPV 400 (477)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCccccchhheeeEEEeeecccCc-ccc
Confidence 88899999999999999999999999999999999998877666654 456699999999999999999999996 454
Q ss_pred hh
Q 005107 290 YN 291 (714)
Q Consensus 290 y~ 291 (714)
.-
T Consensus 401 T~ 402 (477)
T KOG3713|consen 401 TV 402 (477)
T ss_pred cc
Confidence 43
No 12
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.50 E-value=9.3e-13 Score=146.62 Aligned_cols=188 Identities=19% Similarity=0.340 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHhhcC------------CCCCcccchh-----
Q 005107 449 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSNG----- 511 (714)
Q Consensus 449 ~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~~i~~i~~~~~------------~~~~~~~~~~----- 511 (714)
+.+-.++.++|+..-+.|+...| ++|+++.||++|+++++++++..++.... .....+.+..
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 45566778889999999999999 69999999999999998877665543210 1111111111
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCc
Q 005107 512 -----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 586 (714)
Q Consensus 512 -----~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~ 586 (714)
.+.-++-.+-.+|++|+++..++++.+..|+..+.+.+..+++++++++..||..|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 1233445556779999999999999999999999999999999999999999999999999763
Q ss_pred ccCccccccccCChhHHHHHHHHHhhccC-HHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 587 LADDDYLLFNFNDYPNGMVTLFNLLVMGN-WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 661 (714)
Q Consensus 587 ~~~~~y~~~nF~~f~~a~~tLf~i~t~e~-W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~ 661 (714)
.+|.++..|+.++++++.++. +.++. ..+...+.+||++|.++..++++|+|+|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~~-----~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDELY-----QANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhhh-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 479999999999999988752 33221 123366899999999999999999999999999976
No 13
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-12 Score=152.24 Aligned_cols=198 Identities=17% Similarity=0.297 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHhhcC-------------CCCCcccchhh--
Q 005107 448 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSNGE-- 512 (714)
Q Consensus 448 ~~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~~i~~i~~~~~-------------~~~~~~~~~~~-- 512 (714)
.+.+-++|.++|+++-+.++.-.+...|+++.||+.|+.++.++++..++.... .+...+.+...
T Consensus 468 ~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a 547 (798)
T KOG3599|consen 468 CEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVA 547 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Confidence 356678888999999999999888779999999999999999888776653211 11112211111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCC
Q 005107 513 --------WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEE 584 (714)
Q Consensus 513 --------~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~ 584 (714)
++-++-.+-.+|++|+++.++.++.+-.||.+++++++.+++..+++++.||++|..+||...
T Consensus 548 ~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v--------- 618 (798)
T KOG3599|consen 548 QWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV--------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---------
Confidence 222344555678999999999999999999999999999999999999999999999999875
Q ss_pred CcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 585 TDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 664 (714)
Q Consensus 585 ~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~ 664 (714)
.||.||.+|++|++..+-+ ++-.......+...+.+||.++.+++.++++|||+|+|.+.|.+..+
T Consensus 619 ----------~~f~~f~~s~~t~~~~~~G----~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 619 ----------SDFRTFVASIVTLLRYILG----DFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred ----------CChHHHHHHHHHHHHHHhc----cCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 4799999999999998877 11111122233355789999999999999999999999999999877
Q ss_pred Hhhh
Q 005107 665 LESS 668 (714)
Q Consensus 665 ~~~~ 668 (714)
...+
T Consensus 685 ~~~~ 688 (798)
T KOG3599|consen 685 DLAK 688 (798)
T ss_pred HHhh
Confidence 6665
No 14
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.45 E-value=7.7e-16 Score=156.89 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=177.4
Q ss_pred chHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHhhccccchhcch----------HHHHHHHHHHHHHHHHHHHH
Q 005107 401 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESS----------LQSVWQEVEFVFGWIYVLEM 463 (714)
Q Consensus 401 ~~~r~~~~~iv~~~-------~f~~~i~~iIlln~i~l~~~~~~~~~~~~----------~~~~~~~~~~~f~~iF~~E~ 463 (714)
..+|+++++-.++| .|.|+..+.|.++++.-.++|.+-..... +...+..+|..|+.+|+.|.
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 57899999998876 58899999999999999998865332211 11234568899999999999
Q ss_pred HHHHHhhcc-cccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 464 ALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 542 (714)
Q Consensus 464 ilKi~a~G~-~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl 542 (714)
+||+++..- .+|.|+...++|.+.++...++++++-..+.+- ..-.+|+||++|++|.-|+++++|.+..||
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSG-------aFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSG-------AFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccc-------eeEEEEeeeeeeeeeecccccccchhhhhH
Confidence 999998864 468899999999998888777766543222111 123478899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHH
Q 005107 543 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 622 (714)
Q Consensus 543 ~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~ 622 (714)
..+...++-++.-+-+.+++||.+...-=.|. + ..+|.+++.|++--...||+-|+.|+
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~--------~----------at~FTsIPaaFWYTIVTmTTLGYGDM--- 376 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGS--------S----------ATKFTSIPAAFWYTIVTMTTLGYGDM--- 376 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc--------c----------ccccccCcHhHhhheeeeeecccccc---
Confidence 99998887665555555556665432222221 1 36899999999866666666665554
Q ss_pred HHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005107 623 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 669 (714)
Q Consensus 623 ~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~ 669 (714)
..+..++-.|.+..-+++++++.|.|.+|+.||+..+..++..
T Consensus 377 ----Vp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRA 419 (632)
T KOG4390|consen 377 ----VPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419 (632)
T ss_pred ----chHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhh
Confidence 4456677788899999999999999999999999988665543
No 15
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.21 E-value=5e-10 Score=133.77 Aligned_cols=217 Identities=12% Similarity=0.016 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHhhc-----CCCC----------Ccccchhh
Q 005107 448 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA-----SPNG----------QTFLSNGE 512 (714)
Q Consensus 448 ~~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~~i~~i~~~~-----~~~~----------~~~~~~~~ 512 (714)
.+++.......+..+-+..++..|...|+++.||++|++.....+...+.... .... ........
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 34555566667778888888889988999999999999655443333221110 0000 00001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccccccccCC-CCCCCcccCc
Q 005107 513 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNA-KLEETDLADD 590 (714)
Q Consensus 513 ~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~-~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~-~~~~~~~~~~ 590 (714)
++-+..++..+|++.+++.++.+--+..++.+.+. .++.++++++++++-||+....+|+........ ..+.+. ...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 549 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSC 549 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccc
Confidence 45666777888888888888888888888999988 999999999999999999999999764321100 000000 000
Q ss_pred cccccccCChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005107 591 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 668 (714)
Q Consensus 591 ~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~ 668 (714)
......|.++..++.+||..+-|++-. . .........++.++|++|.++++++++||+||++-++|++..+....
T Consensus 550 ~~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~ 624 (743)
T TIGR00870 550 EKQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADE 624 (743)
T ss_pred ccccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence 112368999999999999887776432 1 11111123668999999999999999999999999999987666443
No 16
>PLN03223 Polycystin cation channel protein; Provisional
Probab=98.99 E-value=4.6e-08 Score=114.91 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=105.8
Q ss_pred HHHHHHHHHHH---HHHhhHhheec-----ccccccccccccchhhHHHHHHHHHHHHhhhc------------------
Q 005107 136 LVYEGITLVIL---IIHTFFPITYE-----GSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------------------ 189 (714)
Q Consensus 136 ~~~e~~~~~if---~~e~~~k~~~~-----g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~------------------ 189 (714)
++.|+++++++ +.+=+.++.-. +.+.||+++||++|++++++++..++++....
T Consensus 1176 LacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ 1255 (1634)
T PLN03223 1176 FAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKN 1255 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhh
Confidence 45577654444 34434443321 23569999999999999998888776542110
Q ss_pred -CC----------cC-----Ccc----------------c-hhhhehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 005107 190 -SP----------IA-----FNF----------------L-PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLA 236 (714)
Q Consensus 190 -s~----------~~-----~~~----------------~-~~r~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~ 236 (714)
+. +. ... . ..=+++.+|.+|+++..|.++.+..++.+++|+++..++
T Consensus 1256 ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~I 1335 (1634)
T PLN03223 1256 LSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFV 1335 (1634)
T ss_pred hhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 000 0 012256688888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhcCCC
Q 005107 237 LGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNN 282 (714)
Q Consensus 237 l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lfvl~Ttenw 282 (714)
+++++++.||++|..+||... ..|.+++.|+.+||.+++.+-+
T Consensus 1336 IF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfd 1378 (1634)
T PLN03223 1336 IFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDIT 1378 (1634)
T ss_pred HHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCch
Confidence 999999999999999999863 4799999999999999987543
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.92 E-value=8.9e-09 Score=110.78 Aligned_cols=241 Identities=15% Similarity=0.202 Sum_probs=151.8
Q ss_pred HHHHHHHhhcch------hHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 005107 403 FSEKLKAFIRST------KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF---- 472 (714)
Q Consensus 403 ~r~~~~~iv~~~------~f~~~i~~iIlln~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~G~---- 472 (714)
.+.+++++.+.| .|..++.++++.++|+.++.|.. +........+.++|++.+++|.+|+++|+++.|.
T Consensus 77 ~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~-e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rY 155 (654)
T KOG1419|consen 77 IQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIE-EYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRY 155 (654)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 344566666543 34556666666666666665532 2233445678899999999999999999999874
Q ss_pred ------cccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 473 ------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLI 546 (714)
Q Consensus 473 ------~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~ 546 (714)
-+|-+.+...+|+++++.+++.+.+ .+.+.-+ ....+|-+|.+.+||++|+=++-...+.+...+..--
T Consensus 156 rG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~ 230 (654)
T KOG1419|consen 156 RGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHS 230 (654)
T ss_pred ccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCcccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhH
Confidence 3567899999999988776443221 1111111 2234677777777777777777767777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHHHhh
Q 005107 547 PSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL 626 (714)
Q Consensus 547 ~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~ 626 (714)
+.++....+-|++ .+|+..-+.+=.-...+ +-....|.+++.|+++=...+|+- +|.|.
T Consensus 231 ~ELiTt~YIGFL~-LIfsSflVYLaEKd~~~-------------e~~n~~F~TyADALWWG~ITltTI-------GYGDk 289 (654)
T KOG1419|consen 231 KELITTWYIGFLV-LIFSSFLVYLAEKDAQG-------------EGTNDEFPTYADALWWGVITLTTI-------GYGDK 289 (654)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccccc-------------ccccccchhHHHHHHhhheeEEee-------ccCCc
Confidence 5554443333322 23333333332221111 001247999999997433222222 47788
Q ss_pred hCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005107 627 TGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 670 (714)
Q Consensus 627 ~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~ 670 (714)
++..|-+-+..+..-+.++-+..|.-+++-..|.-..+++..++
T Consensus 290 ~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQK 333 (654)
T KOG1419|consen 290 TPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQK 333 (654)
T ss_pred CcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHH
Confidence 88888888888888888888899999999888877666555433
No 18
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-07 Score=107.24 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHhhcC----C-------------CCCcccchh
Q 005107 449 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS----P-------------NGQTFLSNG 511 (714)
Q Consensus 449 ~~~~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~~v~i~~~i~~i~~~~~----~-------------~~~~~~~~~ 511 (714)
+++=+.-++=++.|=+-.++..|...|++..||++|+..+.+.+...++-... . .....+-..
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 33333334446677778888999999999999999999888766655543211 0 000001122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc-CCCCCCCcccCc
Q 005107 512 EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-NAKLEETDLADD 590 (714)
Q Consensus 512 ~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~-~~~~~~~~~~~~ 590 (714)
+...+..+|-.+|++-++..++.+.-+.-++.+.+..+..++++..++++.|++--.+++......- +.. ++..+..
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~-~~~~~~~- 544 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI-DQDYTKT- 544 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc-ccccccc-
Confidence 3556778888889988888888888888889999999999999999999999977667776543221 111 1111111
Q ss_pred cccccccCChhHHHHHHHHHhhccCHHHHHH--------HHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 591 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQ--------SYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE 662 (714)
Q Consensus 591 ~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~--------~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~ 662 (714)
...|.++..++-+|| |..+-- .+...-...++.+.|.+|+++..+++|||.||.+-.+|++.
T Consensus 545 ---~~~fsti~eS~~tLF-------WsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeI 614 (822)
T KOG3609|consen 545 ---TDSFSTIGESSKTLF-------WSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEI 614 (822)
T ss_pred ---ccccccHHHHHHHHH-------HHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHH
Confidence 127999999999998 443310 11100113567999999999999999999999999999998
Q ss_pred HHHhhh
Q 005107 663 MELESS 668 (714)
Q Consensus 663 ~~~~~~ 668 (714)
.+.+..
T Consensus 615 eD~ADv 620 (822)
T KOG3609|consen 615 EDDADV 620 (822)
T ss_pred hhcchh
Confidence 766554
No 19
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.64 E-value=4.3e-09 Score=108.19 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhHhheeccccc-ccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhccH
Q 005107 137 VYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (714)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~~~g~~~-f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~~ 215 (714)
.+|..|++||+.|.++|+..-+.+. |.|+...++|++.++.+.|.+++..-. +.....-.+|++|++|.+++-+.++
T Consensus 231 clDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQ 308 (632)
T KOG4390|consen 231 CLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQ 308 (632)
T ss_pred EecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeeccccc
Confidence 3499999999999999998766554 889999999998888888776554221 2223445788889999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHhcCCCCccc
Q 005107 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF-EDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVW 286 (714)
Q Consensus 216 ~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF-~~~~~~~~~F~~~~~s~~~lfvl~TtenwpdVm 286 (714)
++|.+=-.+..-..+++-+++-+-.-+++||. .|| .++....+.|.+++.|||--.|.+||-|+.|..
T Consensus 309 GLRILGYTLKSCASELGFLlFSLtMAIIIFAT---vMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMV 377 (632)
T KOG4390|consen 309 GLRILGYTLKSCASELGFLLFSLTMAIIIFAT---VMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMV 377 (632)
T ss_pred ccchhhhhHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhccccccccccCcHhHhhheeeeeeccccccc
Confidence 98877655554444444444333334444443 444 233334678999999999999999999999965
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.32 E-value=2.1e-05 Score=95.11 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh------c---------cccccccc
Q 005107 415 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 479 (714)
Q Consensus 415 ~f~~~i~~iIlln~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~------G---------~~~y~~~~ 479 (714)
+|+.++.++++.+++.+.++...... .....+.+++.++.++|.+|++++.... | .++|++ .
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~~--~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~ 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLNA--SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-T 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeCC--CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-H
Confidence 67888888888888887765543211 1122467789999999999999997643 1 156775 4
Q ss_pred ccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 480 QNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCV 559 (714)
Q Consensus 480 wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~ 559 (714)
|-++|++.++...+-.. +. .+... ....+++++++|++|+.|+.+.+.++..-...- ...-.+..++.+++++
T Consensus 140 ~f~~Dlis~lP~~~i~~--~~-~~~~~---~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~-~~~~~~~kli~~~l~~ 212 (823)
T PLN03192 140 WFLMDVASTIPFQALAY--LI-TGTVK---LNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFS-YFWIRCARLLSVTLFL 212 (823)
T ss_pred hHHHHHHHHhHHHHHHH--Hh-cCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 88999987665432111 11 11111 111234444444444444444444443322110 0011223333333334
Q ss_pred HHHHHHHHHHHccccccccCCCCCCCcccCccccccccC------ChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchh
Q 005107 560 QCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN------DYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTL 633 (714)
Q Consensus 560 ~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~------~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~ 633 (714)
...+|++...+-......+ .+-... ...||. -+..|+++.+..+|+-|+.|+ ++....-
T Consensus 213 ~H~~aC~~y~i~~~~~~~~-----~~Wi~~---~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi-------~p~t~~E 277 (823)
T PLN03192 213 VHCAGCLYYLIADRYPHQG-----KTWIGA---VIPNFRETSLWIRYISAIYWSITTMTTVGYGDL-------HAVNTIE 277 (823)
T ss_pred HHHHHHHHHHHHhhcCCCC-----CchHHH---hhhccccCcHHHHHHHHHHHHHHHHhhccCCCc-------CCCccch
Confidence 4444544433321111000 000000 002233 255677777777777666555 3323334
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 634 AYFVSFYLITVLLLLNLVIAFVLEAFFA 661 (714)
Q Consensus 634 iyFi~f~ll~~~i~lnLfvavI~e~f~~ 661 (714)
..|.+++++.++.+....+|-+.+-..+
T Consensus 278 ~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 278 MIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555665666666666554433
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.22 E-value=7.9e-06 Score=88.56 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhhHhhe-------ecc---cccccccccccchhhHHHHHHHHHHHHhhhcCCc-CCccchhhhehh
Q 005107 136 LVYEGITLVILIIHTFFPIT-------YEG---SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPI-AFNFLPLRIAPY 204 (714)
Q Consensus 136 ~~~e~~~~~if~~e~~~k~~-------~~g---~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~-~~~~~~~r~~R~ 204 (714)
+++|++.+++|.+|.++|++ +.| .-.|-++|-+++|+++++.+++-+.+- +.+ ....+.+|-+|.
T Consensus 128 ~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g----~qG~vfatSalrslRF 203 (654)
T KOG1419|consen 128 YILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG----SQGNVFATSALRSLRF 203 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec----CccceeehhhhhhhHH
Confidence 57799999999999999988 333 344889999999999887774422111 111 122334555555
Q ss_pred hhHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccccccccchHHHHHHHHHHHhc
Q 005107 205 IRVVFFIL--NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT---VQGNMVFTSFGTTLYQMFVLFTT 279 (714)
Q Consensus 205 lR~~~li~--~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~---~~~~~~F~~~~~s~~~lfvl~Tt 279 (714)
|-.+|++. +-.++.+++.+++-+=..=+--..-..|+.++|+-+-+.+=... .+++..|.++.+|+|+=.+.+||
T Consensus 204 lQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltT 283 (654)
T KOG1419|consen 204 LQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTT 283 (654)
T ss_pred HHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEe
Confidence 55555554 22355566655543322222222223333445555555554432 22456799999999999999999
Q ss_pred CCCCccc
Q 005107 280 SNNPDVW 286 (714)
Q Consensus 280 enwpdVm 286 (714)
-|+.|..
T Consensus 284 IGYGDk~ 290 (654)
T KOG1419|consen 284 IGYGDKT 290 (654)
T ss_pred eccCCcC
Confidence 9999984
No 22
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.08 E-value=1.6e-05 Score=88.75 Aligned_cols=135 Identities=20% Similarity=0.329 Sum_probs=100.1
Q ss_pred HHHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhc------------CC-cCCcc-------chhh-
Q 005107 142 TLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------------SP-IAFNF-------LPLR- 200 (714)
Q Consensus 142 ~~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~------------s~-~~~~~-------~~~r- 200 (714)
+++.++..-+.++.-.| +.|++++||++|+++++++++.++.+.... .. ...+. ...+
T Consensus 220 ~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~~ 298 (425)
T PF08016_consen 220 FVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYRY 298 (425)
T ss_pred HHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHH
Confidence 34445566566666667 569999999999999988888766654210 00 00010 0011
Q ss_pred ------hehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Q 005107 201 ------IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 274 (714)
Q Consensus 201 ------~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf 274 (714)
.+-.+|.+++++..+.+..+.+++.++.++++..+++++++++-||.+|..+||.. ...|.++..|+.+++
T Consensus 299 l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~---~~~f~s~~~s~~tl~ 375 (425)
T PF08016_consen 299 LLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSY---SEDFSSFSSSLVTLF 375 (425)
T ss_pred HHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---ccccCCHHHHHHHHH
Confidence 12356666777777999999999999999999999999999999999999999975 356999999999999
Q ss_pred HHHhcC
Q 005107 275 VLFTTS 280 (714)
Q Consensus 275 vl~Tte 280 (714)
.++-.+
T Consensus 376 ~~l~g~ 381 (425)
T PF08016_consen 376 RMLLGD 381 (425)
T ss_pred HHhcCC
Confidence 887653
No 23
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.73 E-value=0.00083 Score=79.15 Aligned_cols=134 Identities=11% Similarity=0.121 Sum_probs=100.1
Q ss_pred HHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhcCCcCC--------------c-------cchhhh
Q 005107 143 LVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF--------------N-------FLPLRI 201 (714)
Q Consensus 143 ~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~--------------~-------~~~~r~ 201 (714)
.+.|+++-+.++.-.+.+.|++++||++|++++.++++-.++++...+.... + ....|.
T Consensus 476 ~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~ 555 (798)
T KOG3599|consen 476 VLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARN 555 (798)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHH
Confidence 3445666677766345656999999999999999999877776543111100 0 011122
Q ss_pred e-------hhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Q 005107 202 A-------PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 274 (714)
Q Consensus 202 ~-------R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf 274 (714)
. =-+|.+++++-.+.++..-+++.+++++++...+.++++++-||.+|+.+||... ..|.|+.+|+.+++
T Consensus 556 l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---~~f~~f~~s~~t~~ 632 (798)
T KOG3599|consen 556 LLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---SDFRTFVASIVTLL 632 (798)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CChHHHHHHHHHHH
Confidence 1 2456666666778999999999999999999999999999999999999999863 56999999999988
Q ss_pred HHHhc
Q 005107 275 VLFTT 279 (714)
Q Consensus 275 vl~Tt 279 (714)
-..=.
T Consensus 633 ~~~~G 637 (798)
T KOG3599|consen 633 RYILG 637 (798)
T ss_pred HHHhc
Confidence 76644
No 24
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.37 E-value=0.0033 Score=71.78 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=123.3
Q ss_pred cccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 473 ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPY 552 (714)
Q Consensus 473 ~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~ 552 (714)
++||-+.-|++|.++...+++.....+. ..+.-.+|..-.+.-.|-..+++-++.+++.+...+..+....+.++.+
T Consensus 589 ~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~ 665 (929)
T KOG0510|consen 589 RHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKS 665 (929)
T ss_pred HHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHH
Confidence 6899999999999988777664332111 0111012223345566777899999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHH-HHHHH-Hhhh---
Q 005107 553 LGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV-WMQSY-KELT--- 627 (714)
Q Consensus 553 ~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~-im~~~-~~~~--- 627 (714)
+.+..++++.|++--.-+|+.. ..|.|.+-|.+.-|..|.||+=-. .|+.- ....
T Consensus 666 f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~ 725 (929)
T KOG0510|consen 666 FMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLA 725 (929)
T ss_pred HHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccccccccchhhcCccc
Confidence 8888888888887777777665 248889999999999998875322 22211 1111
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005107 628 GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 668 (714)
Q Consensus 628 g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~ 668 (714)
....+.+-|++|.++..++++||.||+-+.--+...+.++.
T Consensus 726 ~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~L 766 (929)
T KOG0510|consen 726 HPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAEL 766 (929)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 12457889999999999999999999998877766555443
No 25
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0038 Score=66.09 Aligned_cols=128 Identities=20% Similarity=0.321 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccC
Q 005107 519 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 598 (714)
Q Consensus 519 ~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 598 (714)
++-.+-++|-+-.++....++-|+..++|+++.+..-..+++.-|..-|...-|. ++..|.
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP-------------------YHdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP-------------------YHDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc-------------------hHHhhh
Confidence 3444566677788899999999999999999888766655554443322222221 246788
Q ss_pred ChhHHHHHHHHHhhccCHHHHHHHHHhhhCC-cc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005107 599 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AW--TLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 666 (714)
Q Consensus 599 ~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~-~~--~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~ 666 (714)
+...---.||.+..|++--... +.+..-.+ .| +.+|..+|+-+-.+++|+||||+|.++|.....-.
T Consensus 445 sLntvsECLFSLINGDDMFaTF-A~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~q 514 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATF-ATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQ 514 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 8887777889988887644332 12222221 22 79999999999999999999999999998754433
No 26
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.023 Score=66.16 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccccchhcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cc----
Q 005107 415 KFGYMISIILIVNLVAVIVETTLDIQES-------SLQSVWQEVEFVFGWIYVLEMALKIYSY-----------GF---- 472 (714)
Q Consensus 415 ~f~~~i~~iIlln~i~l~~~~~~~~~~~-------~~~~~~~~~~~~f~~iF~~E~ilKi~a~-----------G~---- 472 (714)
.|++++.+..+.++++.-++-+....+. .....+.+++.+.-++|+++++++.... .+
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 4666666666666655444332211111 0224567788899999999999988632 11
Q ss_pred cccccccccchhHHHHHHHHHHHHHhhcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 473 ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTF-LSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMP 551 (714)
Q Consensus 473 ~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~-~~~~~~lr~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~ 551 (714)
.+|++ .|-++|++.++.. +.++.+........ ........++...|+.|+.|+++.++++...........+.-
T Consensus 159 ~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~-- 233 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG-- 233 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--
Confidence 57888 7999999976642 22221111000000 011235677788888888888888888777666666444432
Q ss_pred HHHHHHHHHHHHHHHHHHH--cccccc-ccCCCC-CCCccc-Cccccc--cccCChhHHHHHHHHHhhccCHHHHHH---
Q 005107 552 YLGTIFCVQCIYCSLGVQI--FGGIVN-AGNAKL-EETDLA-DDDYLL--FNFNDYPNGMVTLFNLLVMGNWQVWMQ--- 621 (714)
Q Consensus 552 ~~~ll~~~~~~fAiiG~~l--F~g~~~-~~~~~~-~~~~~~-~~~y~~--~nF~~f~~a~~tLf~i~t~e~W~~im~--- 621 (714)
++.++++.++.-=+.|..- -+.... .|.... ...... ...++. ++|..+..+.--.+-+ |..++.
T Consensus 234 ~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aL-----yw~l~tLst 308 (727)
T KOG0498|consen 234 AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYAL-----YWGLSTLST 308 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHH-----HHHhhHhhh
Confidence 1111111111111122211 111111 122210 001000 001111 2366665555322222 333322
Q ss_pred -HHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 622 -SYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE 662 (714)
Q Consensus 622 -~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~ 662 (714)
++.+.+++.++=+.|..++++.+.++..++||-+ .+|.+.
T Consensus 309 vG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm-t~~iqs 349 (727)
T KOG0498|consen 309 VGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM-TALLQS 349 (727)
T ss_pred ccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH-HHhHHH
Confidence 2344455567778888888888888888888864 344443
No 27
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=97.05 E-value=0.038 Score=65.73 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc-----CCCCC-------------CCc
Q 005107 525 LIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NAKLE-------------ETD 586 (714)
Q Consensus 525 ~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~-----~~~~~-------------~~~ 586 (714)
++-++.+=+.+..++.++.+-.+++.--+++-+++.|.|+|+|...|.+..+-. |+... ..+
T Consensus 2398 LFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~t 2477 (2706)
T KOG3533|consen 2398 LFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSET 2477 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCcccc
Confidence 344455556677777777777777777777778889999999999999876321 11000 000
Q ss_pred ccCccc---------cccccCChhHHHHHHHHHhhc---------cCHHHHHHHHHhhhC-CcchhhhhhHHHHHHHHHH
Q 005107 587 LADDDY---------LLFNFNDYPNGMVTLFNLLVM---------GNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLL 647 (714)
Q Consensus 587 ~~~~~y---------~~~nF~~f~~a~~tLf~i~t~---------e~W~~im~~~~~~~g-~~~~~iyFi~f~ll~~~i~ 647 (714)
+...++ ....=+.--.|.=||+-+..+ .|-.|++..-..--+ -.|-.+|=..|+++..+|+
T Consensus 2478 c~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIV 2557 (2706)
T KOG3533|consen 2478 CPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIV 2557 (2706)
T ss_pred CCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 000000 011223344555565544433 233333321110001 1234567788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 005107 648 LNLVIAFVLEAFFAEMELESSEKC 671 (714)
Q Consensus 648 lnLfvavI~e~f~~~~~~~~~~~~ 671 (714)
|||+-|||++.|.....++.++++
T Consensus 2558 LNLIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2558 LNLIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHHHhhhhhHHHHHhhhhHHHH
Confidence 999999999999987766665554
No 28
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.98 E-value=0.08 Score=61.08 Aligned_cols=114 Identities=14% Similarity=0.241 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCChhHHHHHHHHHhhccCHHHHHHHH
Q 005107 544 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSY 623 (714)
Q Consensus 544 ~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~e~W~~im~~~ 623 (714)
.++..++.++.+.+++++-||..-..+|.+-.....+.... ...++-....++|..+++++|+.+.+-+ ++
T Consensus 538 mI~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~~------dl 608 (782)
T KOG3676|consen 538 MIFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGMG------DL 608 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhhh------hh
Confidence 35689999999999999999999999998865542221111 0011111334668999999999876532 22
Q ss_pred HhhhCC---cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005107 624 KELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 666 (714)
Q Consensus 624 ~~~~g~---~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~ 666 (714)
...... ....+-|++|.++..++++||.||..-|+|....++.
T Consensus 609 ~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 609 EACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 222222 3478899999999999999999999999999877666
No 29
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.97 E-value=0.015 Score=70.14 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHHhhcCCCCCcccchhhH-HHHHH
Q 005107 447 VWQEVEFVFGWIYVLEMALKIYSYGF-------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEW-IRYLL 518 (714)
Q Consensus 447 ~~~~~~~~f~~iF~~E~ilKi~a~G~-------~~y~~~~wn~fD~~v~i~~~i~~i~~~~~~~~~~~~~~~~~-lr~lr 518 (714)
.++++=++.+..+.+|-+=++...+- +-||.+.||..|.+++..-+++.++-+....... .+.+ +-+--
T Consensus 823 ~~Ew~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~---~GRvIl~~d~ 899 (1381)
T KOG3614|consen 823 MWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIY---SGRVILCFDF 899 (1381)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcccee---cceeeeeehH
Confidence 44555555566677888877765431 5699999999999998888777766554422211 2222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccC
Q 005107 519 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 598 (714)
Q Consensus 519 ~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 598 (714)
++=.+|++-++...+.+.--+..+.+-+++++.++.+++++++.|++.--.+-... ++ . .+.=|+
T Consensus 900 i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~----e~----------~-~w~l~R 964 (1381)
T KOG3614|consen 900 ILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPD----EP----------R-HWWLFR 964 (1381)
T ss_pred HHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC----CC----------c-hHHHHH
Confidence 44456777777777777766666778888888988888888888886532211111 00 0 001111
Q ss_pred C-hhHHHHHHHHHhhccCHHHHHHHHH------------------hh--hCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005107 599 D-YPNGMVTLFNLLVMGNWQVWMQSYK------------------EL--TGTAWTLAYFVSFYLITVLLLLNLVIAFVLE 657 (714)
Q Consensus 599 ~-f~~a~~tLf~i~t~e~W~~im~~~~------------------~~--~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e 657 (714)
+ |..-.+.+| |+-..+-++.+. -. .|++.+.+..+.|.++.+++++||.||++-.
T Consensus 965 ~i~y~PYlmif----GeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~ 1040 (1381)
T KOG3614|consen 965 NIFYWPYLMLF----GEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSY 1040 (1381)
T ss_pred HHHHHHHHHHh----ccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 111111111111 01 1234467788889999999999999999988
Q ss_pred HHHHHHHHhh
Q 005107 658 AFFAEMELES 667 (714)
Q Consensus 658 ~f~~~~~~~~ 667 (714)
.|.+..+...
T Consensus 1041 tf~~v~~~sd 1050 (1381)
T KOG3614|consen 1041 TFGNVQENSD 1050 (1381)
T ss_pred HHHHHHHhHH
Confidence 8877655443
No 30
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.79 E-value=0.014 Score=70.26 Aligned_cols=139 Identities=11% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhh---hc--------CCc-----CC----ccchhh
Q 005107 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGL---YL--------SPI-----AF----NFLPLR 200 (714)
Q Consensus 141 ~~~~if~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~---~~--------s~~-----~~----~~~~~r 200 (714)
.....+.++-...++..|...|+++.||++|++.....++.++.... .. +.. .. -....-
T Consensus 397 ~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~ 476 (743)
T TIGR00870 397 TWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFAL 476 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Confidence 33444455555555666777899999999998655444443221110 00 000 00 011223
Q ss_pred hehhhhHHHHhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccc--c--------------ccccc
Q 005107 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTV--Q--------------GNMVF 263 (714)
Q Consensus 201 ~~R~lR~~~li~~~~~lr~~~~~l~~~l~-~i~~v~~l~~l~~~~fAi~g~~lF~~~~--~--------------~~~~F 263 (714)
++..+|.+.+++.++.+--...++.+++. +++..+++++++++=||+-..++|+... + ....|
T Consensus 477 ~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 556 (743)
T TIGR00870 477 VLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAY 556 (743)
T ss_pred HHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence 34455666666555666667777788888 9999999999999999999999997321 1 11569
Q ss_pred cchHHHHHHHHHHHhc
Q 005107 264 TSFGTTLYQMFVLFTT 279 (714)
Q Consensus 264 ~~~~~s~~~lfvl~Tt 279 (714)
.++..++.++|..+=.
T Consensus 557 ~~~~~s~~~lf~~~~G 572 (743)
T TIGR00870 557 STLFETSQELFWAIIG 572 (743)
T ss_pred cCHHHHHHHHHHHHcC
Confidence 9999999999976533
No 31
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.74 E-value=0.11 Score=63.04 Aligned_cols=146 Identities=13% Similarity=0.207 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhHhheec-----------c----cccccccccccchhhHHHHHHHHHHHHhhhcC-CcCCccchhh
Q 005107 137 VYEGITLVILIIHTFFPITYE-----------G----SPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-PIAFNFLPLR 200 (714)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~~~-----------g----~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s-~~~~~~~~~r 200 (714)
++|.++-++|.+|+++++..- . .+.|+| .|.++|++.++..-+ +.+..... ........+|
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~--i~~~~~~~~~~~~~~~~l~ 172 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPFQA--LAYLITGTVKLNLSYSLLG 172 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHH--HHHHhcCCccchHHHHHHH
Confidence 349999999999999997521 1 122554 477888776665532 22221100 0000112333
Q ss_pred hehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccc-------------cccch
Q 005107 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGNM-------------VFTSF 266 (714)
Q Consensus 201 ~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~-~~~~~~-------------~F~~~ 266 (714)
++|++|..|+.+....+.+.++.- ...-.+..++++++++.-++|.+.+.+-.. ..++.+ .+..+
T Consensus 173 llrl~Rl~ri~~~~~~le~~~~~~-~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Y 251 (823)
T PLN03192 173 LLRFWRLRRVKQLFTRLEKDIRFS-YFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRY 251 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHH
Confidence 333333333332223332222110 001122333333333333344444333211 111111 12235
Q ss_pred HHHHHHHHHHHhcCCCCccc
Q 005107 267 GTTLYQMFVLFTTSNNPDVW 286 (714)
Q Consensus 267 ~~s~~~lfvl~TtenwpdVm 286 (714)
..|+++..+.+||-|+.|+-
T Consensus 252 i~slYwai~TmtTVGYGDi~ 271 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLH 271 (823)
T ss_pred HHHHHHHHHHHhhccCCCcC
Confidence 55999999999999999984
No 32
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.52 E-value=0.56 Score=54.70 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=88.6
Q ss_pred HHHHHHHH---HHHhhHhheecccccccccccccchhhHHHHHHHHHHHHhhhc---CCcC-------Cc----------
Q 005107 139 EGITLVIL---IIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-------FN---------- 195 (714)
Q Consensus 139 e~~~~~if---~~e~~~k~~~~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~---s~~~-------~~---------- 195 (714)
|.+.+.+. +.+=+-.++..|.+.|.++.||++|++.+.+.+..++.-.... +... .+
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 55544443 3444555677899999999999999999999888776653310 0000 00
Q ss_pred --cchhhhehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c---c-cc-----cc
Q 005107 196 --FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED---T---V-QG-----NM 261 (714)
Q Consensus 196 --~~~~r~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~---~---~-~~-----~~ 261 (714)
..+=-++-.+|.+-+++..+.+--+--++.+.+.++..-++.+.++++-||+=-.|++.- . . ++ ..
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~ 546 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTD 546 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccccc
Confidence 011234556777777777776666666777888888888888777777777766677641 1 0 01 12
Q ss_pred cccchHHHHHHHH
Q 005107 262 VFTSFGTTLYQMF 274 (714)
Q Consensus 262 ~F~~~~~s~~~lf 274 (714)
.|.++.+++-+||
T Consensus 547 ~fsti~eS~~tLF 559 (822)
T KOG3609|consen 547 SFSTIGESSKTLF 559 (822)
T ss_pred ccccHHHHHHHHH
Confidence 5888888866666
No 33
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.76 E-value=0.057 Score=59.34 Aligned_cols=46 Identities=11% Similarity=0.297 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccchhHHHHHHHHH
Q 005107 448 WQEVEFVFGWIYVLEMALKIYSYGFEN-YWRDGQNRFDFLVTWVIVI 493 (714)
Q Consensus 448 ~~~~~~~f~~iF~~E~ilKi~a~G~~~-y~~~~wn~fD~~v~i~~~i 493 (714)
-..++..|.++|.+-+.+|.+|..-+- ||-.-..++|++.+..+++
T Consensus 164 tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfv 210 (1103)
T KOG1420|consen 164 TQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFV 210 (1103)
T ss_pred HHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchhe
Confidence 357899999999999999999886422 3444555677775555444
No 34
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.99 E-value=2.5 Score=46.57 Aligned_cols=101 Identities=9% Similarity=0.101 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccc
Q 005107 515 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 594 (714)
Q Consensus 515 r~lr~lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~ 594 (714)
+.++++-.+++..++...+.+.....+... -+.++.+..+..|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------l~~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAGT------LFAVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 455666667777777766666654322221 12233334456788888887765321
Q ss_pred cccCChhHHHHHHHHHhhccCHHHHHHHHHhhhCC-cchhhhhhHHHHHHHHH
Q 005107 595 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVLL 646 (714)
Q Consensus 595 ~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~-~~~~iyFi~f~ll~~~i 646 (714)
..+.++..|++.-+..+|+-|..++ .+. ..++++-+++++++..+
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi-------~p~t~~grl~~i~~ii~Gi~v 209 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDI-------VPVSESARLFTISVIILGITV 209 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCC-------CCCCHHHHHHHHHHHHHHHHH
Confidence 1456888888877777777666554 322 33456665555555443
No 35
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.89 E-value=0.43 Score=40.76 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=54.9
Q ss_pred hHHHHhhhhcc-ccCcccCHHHHHHHHHH-hhhhccCCCCCh-HHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 310 TLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 310 ~l~~af~~l~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~s~-~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
.++.||...+. .+.+.++......++.. +. ..++. .+.+.++..+|.++++.++.+||..+...++.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 47899999998 88889999888887776 52 23555 78999999999999999999999877665543
No 36
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.45 E-value=0.12 Score=41.10 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=49.8
Q ss_pred HHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHH
Q 005107 311 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 375 (714)
Q Consensus 311 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l 375 (714)
++.+|+.++.++.|.++.+.....+..+....+ +....+..+.++...|++++|.++.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 468899999999999999998888877743321 1223345666799999999999999999865
No 37
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=91.61 E-value=0.33 Score=46.00 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=56.6
Q ss_pred HHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 307 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 307 r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
.+..++.||++.+.++.|.++.......+..+ ..+.++++.+.++...|++++|.++.++|.+++
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 36668999999999999999988877777655 467889999999999999999999999998764
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=91.60 E-value=0.89 Score=38.73 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=54.2
Q ss_pred hHHHHhhhhc-cccCc-ccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 310 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 310 ~l~~af~~l~-~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
.+..||...+ .++.+ .++......++.. +.++.. ...++.+.+.++..+|+++++.++.+||..+...++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3678999998 57788 5898888777765 222222 3457788999999999999999999999887765544
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=89.72 E-value=1.7 Score=34.21 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=50.1
Q ss_pred HHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 312 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 312 ~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
+++|..++.++.+.++.+.....+... ..+.++.+.++...|.++++.++.+||..++..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 467888888888888888777666543 236778889999999999999999999888766544
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=88.58 E-value=3.8 Score=34.56 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=54.7
Q ss_pred HHhHHHHhhhhcc--ccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 308 RRTLGKAFNLIDN--YNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 308 ~~~l~~af~~l~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
...++.+|...+. .+.+.++.+....++............+..+...++...|.++++.++.++|..++...+.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 3447889999999 7889898888777665421110012356788999999999999999999999888765543
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=87.90 E-value=3.2 Score=35.72 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=53.9
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
..+..+|..++.++.+.++.+.....+... ..+..+.+.++...|.++++.++.+||..++..+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 356789999999999999888877776653 356778889999999999999999999987766543
No 42
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.39 E-value=7.3 Score=43.10 Aligned_cols=66 Identities=23% Similarity=0.544 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc---------cccccccccchhHHHHH
Q 005107 424 LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIY----SYGF---------ENYWRDGQNRFDFLVTW 489 (714)
Q Consensus 424 Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~----a~G~---------~~y~~~~wn~fD~~v~i 489 (714)
++-|.+.+.+....++-...+-..|-.+|+.+=.+|+++++++.- -.|. +.|+.+.--.+|.+.++
T Consensus 7 vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 7 VLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 344555554422222333334456788999999999999999765 2343 67777777777776443
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=87.28 E-value=2.5 Score=36.31 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=53.8
Q ss_pred hHHHHhhhhcc-cc-CcccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHhh
Q 005107 310 TLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 382 (714)
Q Consensus 310 ~l~~af~~l~~-~~-~~~~~~~~~~~~~~~-l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~~ 382 (714)
.++.+|...+. ++ .+.++.+.....+.. +.... ....+..+.+.++..+|.++++.++.+||..++...++-
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 47889999987 75 688998888777654 21100 124567789999999999999999999999887755443
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=86.81 E-value=3.3 Score=35.37 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=53.0
Q ss_pred hHHHHhhhhc-cccCc-ccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 310 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 310 ~l~~af~~l~-~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
.++.+|+..+ ..+.+ .++.+....++.. +...-+ ...+..+.+.++..+|+++++.++.++|..+...++
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3789999997 88888 4998888777764 321111 134677899999999999999999999987765544
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=85.82 E-value=3.2 Score=31.17 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=47.0
Q ss_pred HHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHH
Q 005107 312 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 375 (714)
Q Consensus 312 ~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l 375 (714)
..+|...+..+.+.++.++....+..+ .+..+......++...|.++++.++.++|...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSL-----GEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 467888888888888888877777665 25566778888999999999999999988654
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=85.05 E-value=4.7 Score=34.63 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=50.7
Q ss_pred HHHHhhhhcc-ccCcc-cCHHHHHHHHHHh-hhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 311 LGKAFNLIDN-YNVGF-LNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 311 l~~af~~l~~-~~~~~-~~~~~~~~~~~~l-~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
++.+|+.-+. ++.+. ++.+....++... ..... ...+..+.+.++.++|.++++.++.+||..++..++
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 6788988884 46664 8888877777552 11111 233667899999999999999999999988776554
No 47
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=83.33 E-value=13 Score=41.78 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc------------ccccccc
Q 005107 414 TKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRDG 479 (714)
Q Consensus 414 ~~f~~~i~~iIlln~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~~E~ilKi~a~--G~------------~~y~~~~ 479 (714)
..|+|+|+++..-.++.+-.+.... ........|-.++.+.-+||.++++|..-.- |+ ..|+++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNvaFK-nk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs- 295 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVAFK-NKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS- 295 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeeeec-ccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-
Confidence 3567776666655555443222110 1111122345677788889999999876532 32 356664
Q ss_pred ccchhHHHHHH
Q 005107 480 QNRFDFLVTWV 490 (714)
Q Consensus 480 wn~fD~~v~i~ 490 (714)
|-.+|++..+.
T Consensus 296 WFvIDLLSCLP 306 (971)
T KOG0501|consen 296 WFVIDLLSCLP 306 (971)
T ss_pred HHHHHHHhccc
Confidence 88888876543
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=82.67 E-value=7.1 Score=33.28 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=50.5
Q ss_pred hHHHHhhh-hccccCc-ccCHHHHHHHHHHh-hhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 310 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 310 ~l~~af~~-l~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
.+..+|.. .+.++.+ .++.+....++..- .++.+ ...++.+.+.++..+|.++++.++.+||..+...++.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 36788888 5555544 78888877766543 11121 2446678899999999999999999999877665543
No 49
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.95 E-value=4.7 Score=37.90 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=56.3
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 379 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~ 379 (714)
..++.||+..+..+.+.++.......++.+ ....+..+...+..++|.++++.++.++|..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~l-----g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSL-----GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 346799999999999999988888888777 355678899999999999999999999999887643
No 50
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=80.45 E-value=1.5 Score=28.82 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.1
Q ss_pred HHHHHHhhhcccccccCChhHHHHHHH
Q 005107 351 EFELIFDELDDTHDFKINLDEFADLCN 377 (714)
Q Consensus 351 ~~~~l~~~ld~~~~~~~~~~ef~~l~~ 377 (714)
+.+.+|+..|++++|.++.+||...+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356789999999999999999987754
No 51
>PTZ00183 centrin; Provisional
Probab=79.54 E-value=7 Score=36.50 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=51.7
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
..+..+|..++..+.+.++.+........+ .+.++..+...++..+|.++++.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999988888877776655 356788889999999999999999999997664
No 52
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.45 E-value=66 Score=38.24 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhHhhe--e---------cccc----cccccccccchhhHHHH
Q 005107 137 VYEGITLVILIIHTFFPIT--Y---------EGSP----IFWKSTYTRLKVLCLLI 177 (714)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~--~---------~g~~----~f~~~~~n~~d~~~~i~ 177 (714)
+++.+.=+.|++++++++. + .+++ .|+| .|-++|++.++.
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP 175 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLP 175 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcC
Confidence 3488888999999999975 1 1221 2777 788888776643
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=77.78 E-value=5.2 Score=30.13 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHhhhhccCCC-CChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 325 FLNKEQCIKLFEELNKYRTLPN-ISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~-~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
.++.+.....+..+ ... .+..+...++...|++++|.++.+||....
T Consensus 4 ~i~~~~~~~~l~~~-----g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 4 KITREEFRRALSKL-----GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp EEEHHHHHHHHHHT-----TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred EECHHHHHHHHHHh-----CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 34445544444333 123 888999999999999999999999998664
No 54
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=76.66 E-value=3.4 Score=50.05 Aligned_cols=137 Identities=16% Similarity=0.297 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCCCCCCCcccCccccccccCC
Q 005107 520 ARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND 599 (714)
Q Consensus 520 lR~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~~fAiiG~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~ 599 (714)
+=+..++-+..-++.+|.++.++..-.+.+.--.+++.++.|.|.+++.+.|..-....+++... ...=|+
T Consensus 4790 ffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~p---------dmkcdd 4860 (5019)
T KOG2243|consen 4790 FFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEP---------DMKCDD 4860 (5019)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCC---------Cccchh
Confidence 34445666667778888877777766666666678888999999999999998654322221110 011233
Q ss_pred hhHHHHHHHHHhh----ccCHHHHHHHHHhhhCC---cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005107 600 YPNGMVTLFNLLV----MGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 670 (714)
Q Consensus 600 f~~a~~tLf~i~t----~e~W~~im~~~~~~~g~---~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~~~~~~~~ 670 (714)
..... ||.+-+ +.|-.+=. .+-.|. .+-.+|=+.|.++..++++.++-|+|+++|-+..+..+..+
T Consensus 4861 mltcy--lfhmyvgvragggigdei---edpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvk 4933 (5019)
T KOG2243|consen 4861 MLTCY--LFHMYVGVRAGGGIGDEI---EDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVK 4933 (5019)
T ss_pred hHHHH--hhheeeeeecCCcccccc---cCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHH
Confidence 22211 122111 11211111 111221 23456778889999999999999999999998776655443
No 55
>PRK10537 voltage-gated potassium channel; Provisional
Probab=76.49 E-value=14 Score=40.77 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=54.0
Q ss_pred cchhhhehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Q 005107 196 FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFV 275 (714)
Q Consensus 196 ~~~~r~~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lfv 275 (714)
...++++-+++.+.++.+.+..-+-. .+... -+.++.+..+++++++|...+++.. ++.+.++.+|++.-.+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--l~~~~~~~~l~~~~~~g~~~~~~~f--~~~~~s~~dA~y~svv 178 (393)
T PRK10537 107 LKFLIGYCIVLLVALLIYRRDFDRSS----LAAGT--LFAVISITSLLFYSTFGALYLGDGF--SPPIESLSTAFYFSIV 178 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHcccc--CcCCCCHHHHHHhhhe
Confidence 44555555666666664444433331 11111 2333444556688899988887642 3568899999999999
Q ss_pred HHhcCCCCccc
Q 005107 276 LFTTSNNPDVW 286 (714)
Q Consensus 276 l~TtenwpdVm 286 (714)
.+||.++.|+.
T Consensus 179 t~tTvGyGdi~ 189 (393)
T PRK10537 179 TMSTVGYGDIV 189 (393)
T ss_pred eeecccCCCCC
Confidence 99999999985
No 56
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.96 E-value=48 Score=37.75 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhhcc---------cccccccccchhHHHHHH
Q 005107 445 QSVWQEVEFVFGWIYVLEMALK-----IYSYGF---------ENYWRDGQNRFDFLVTWV 490 (714)
Q Consensus 445 ~~~~~~~~~~f~~iF~~E~ilK-----i~a~G~---------~~y~~~~wn~fD~~v~i~ 490 (714)
-+.|-..|++|-+||++++++- ..--|. +.|.++.--.+|++.++.
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLP 319 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILP 319 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhh
Confidence 3577889999999999999852 111132 688888888888886553
No 57
>PTZ00184 calmodulin; Provisional
Probab=75.26 E-value=10 Score=34.80 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=50.8
Q ss_pred hHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 310 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 310 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
.+..+|...+..+.+.++.++....+..+ .+..+..+.+.++..+|+++++.++.+||....
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 45688999998888999988887777654 356778889999999999999999999997653
No 58
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=75.08 E-value=9.4 Score=35.87 Aligned_cols=63 Identities=27% Similarity=0.448 Sum_probs=53.5
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
..+.+||...+.++.|.++.+.....+..+ ..+.+.++.+.++...|.++++.++.++|....
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~l-----g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSL-----GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHh-----CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 368899999999999999998888777776 356678899999999999999999888887553
No 59
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=72.20 E-value=20 Score=30.37 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=49.1
Q ss_pred HHHHhhhhcc-cc-CcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 311 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 311 l~~af~~l~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
+.+.|+.-+. .+ .+.++.+.....+....+. ..+.+.++.+.+++.+|.++++.++.+||..+...++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l--g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTI--GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 5566666665 34 6678888777666431111 2456889999999999999999999999987765544
No 60
>PTZ00184 calmodulin; Provisional
Probab=71.17 E-value=18 Score=33.15 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=50.7
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 377 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~ 377 (714)
..++..|..++.++.|.++.++.......+ ....+..+.+.++..+|.++++.++.++|...+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 346788999999999999998887776554 2234567888999999999999999999986543
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=69.76 E-value=15 Score=29.31 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=44.7
Q ss_pred HHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhccccc-ccCChhHHHHH
Q 005107 313 KAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADL 375 (714)
Q Consensus 313 ~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~-~~~~~~ef~~l 375 (714)
.+|++-+.++.|.+.-.+....++.+ +.+...+.+.+.+..++||++. +.++.+.|..+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 36777888888877776666666655 2235567799999999999987 99999988754
No 62
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.66 E-value=1.5 Score=48.75 Aligned_cols=133 Identities=14% Similarity=0.259 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhHhheecc-cccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhehhhhHHHHhhccHHH
Q 005107 139 EGITLVILIIHTFFPITYEG-SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (714)
Q Consensus 139 e~~~~~if~~e~~~k~~~~g-~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~R~lR~~~li~~~~~l 217 (714)
|+.+-+.|.+-..+|+++.. .-.||-.-..++|++.+=.+++++.+. +..--+|.||.+|++. .+.+
T Consensus 168 dlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~-----------r~wlglrflralrlmt-vpdi 235 (1103)
T KOG1420|consen 168 DLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN-----------RSWLGLRFLRALRLMT-VPDI 235 (1103)
T ss_pred hhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec-----------cchHHHHHHHHHHhcc-HHHH
Confidence 66666666666666666433 333666666667776665555432111 1222256677777763 3443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccccccccc-----chHHHHHHHHHHHhcCCCCccch
Q 005107 218 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAY----VIFEDTVQGNMVFT-----SFGTTLYQMFVLFTTSNNPDVWI 287 (714)
Q Consensus 218 r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~----~lF~~~~~~~~~F~-----~~~~s~~~lfvl~TtenwpdVm~ 287 (714)
-..+..+ ++--++=+.-++-+|+..++-. ++-.+.-+.-.+|. ++++..+-+.|.++|.++.||.-
T Consensus 236 lqylnil----ktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc 310 (1103)
T KOG1420|consen 236 LQYLNIL----KTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYC 310 (1103)
T ss_pred HHHHHHH----hccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceee
Confidence 3333322 2222222222233333333322 22222111112243 35666777788899999999964
No 63
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=69.14 E-value=17 Score=34.37 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=54.9
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
.-+..||.+.+.++.|-++.....++...| .+.+++++.....++-|..+++.++++||..++
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 347789999999999988888888888777 688999999999999999999999999997664
No 64
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.32 E-value=32 Score=42.80 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHhhHhheeccc-------ccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccc----hhhhehhhhHHHHhh
Q 005107 144 VILIIHTFFPITYEGS-------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFL----PLRIAPYIRVVFFIL 212 (714)
Q Consensus 144 ~if~~e~~~k~~~~g~-------~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~----~~r~~R~lR~~~li~ 212 (714)
..+++|-+=++...+. +.||.+.||++|.+.+....+..+.-+... ......+ .-=++=.+|.+-.+.
T Consensus 833 ftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f~ 911 (1381)
T KOG3614|consen 833 FTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYFT 911 (1381)
T ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhhee
Confidence 3345666555543222 339999999999988888777654433210 0000001 111222455555555
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 213 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFS 245 (714)
Q Consensus 213 ~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~f 245 (714)
.++.+---+..+.+.++.++..++++++.++-|
T Consensus 912 V~~~lGPyI~mv~kMm~dmf~flfllaV~Llsf 944 (1381)
T KOG3614|consen 912 VSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSF 944 (1381)
T ss_pred eccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666677666444444444443
No 65
>PTZ00183 centrin; Provisional
Probab=68.15 E-value=21 Score=33.18 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=50.8
Q ss_pred hHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHH
Q 005107 310 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 377 (714)
Q Consensus 310 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~ 377 (714)
.+..+|..++..+.+.++.++....+..+ ....+....+.++...|.++++.++.+||...+.
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSL-----GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 46788999999999999998887777655 1234567788999999999999999999987654
No 66
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=68.14 E-value=25 Score=33.42 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=53.4
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
+.+.+||++++.++.|.++.......++.+ .-..+..+...++.+.|. +.+.++..+|...+.+..
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-----g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL-----GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-----CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 447899999999999999998888777755 234566788899999998 888999999987776543
No 67
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=66.65 E-value=14 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHhhhcccccccCChhHHHHHHHHH
Q 005107 344 LPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 379 (714)
Q Consensus 344 ~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~ 379 (714)
+-.+++.....+|++-|+++++.++.+||...++.+
T Consensus 15 NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 15 NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 467888899999999999999999999998877643
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=65.94 E-value=5.5 Score=25.14 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.8
Q ss_pred HHHHhhhcccccccCChhHHHHH
Q 005107 353 ELIFDELDDTHDFKINLDEFADL 375 (714)
Q Consensus 353 ~~l~~~ld~~~~~~~~~~ef~~l 375 (714)
+..|+.+|.+++|.++.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45788999999999999999864
No 69
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=62.98 E-value=34 Score=37.42 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHH
Q 005107 303 MDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 379 (714)
Q Consensus 303 ~~~~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~ 379 (714)
...+.+..+..-|+.++.+..|.++.+.+...-+-+.++.+ ..++.++...+-+.+|-++||.+|.+||.+-....
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~-~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN-GAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC-CCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 33445666888999999999999987776554444444443 56888899999999999999999999998765544
No 70
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=61.25 E-value=27 Score=34.42 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=51.0
Q ss_pred HHHHhhhhccccCcccCHHHHHHHHHHhhhhccC------CCCChHHHHHHHhhhcccccccCChhHHHHHHH
Q 005107 311 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL------PNISREEFELIFDELDDTHDFKINLDEFADLCN 377 (714)
Q Consensus 311 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~ 377 (714)
+..||++-+.++.|.++.+.+...+..+....+. +.-..+..+.+|..+|.++++.++.+||..-+.
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4577999999999999998888777665432221 222345677899999999999999999987654
No 71
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=60.34 E-value=34 Score=37.21 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhH
Q 005107 292 FKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDE 371 (714)
Q Consensus 292 f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~e 371 (714)
|+.|+.. ++..+..-|+.+|.+..+.+..+....-++.+ ..++++++.++.++..|+++...++.+|
T Consensus 73 F~~Y~~~--------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e 139 (463)
T KOG0036|consen 73 FKRYLDN--------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEE 139 (463)
T ss_pred HHHHHHH--------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHH
Confidence 7777743 33345677889999888888877666656555 4578999999999999999999999999
Q ss_pred HHHH
Q 005107 372 FADL 375 (714)
Q Consensus 372 f~~l 375 (714)
|.+-
T Consensus 140 ~rd~ 143 (463)
T KOG0036|consen 140 WRDH 143 (463)
T ss_pred HHhh
Confidence 9753
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=58.66 E-value=9.6 Score=25.14 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHhhhcccccccCChhHHHHHHH
Q 005107 352 FELIFDELDDTHDFKINLDEFADLCN 377 (714)
Q Consensus 352 ~~~l~~~ld~~~~~~~~~~ef~~l~~ 377 (714)
.+.+|...|.++++.++.+|+...+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 46788999999999999999987765
No 73
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=57.74 E-value=2.2 Score=43.55 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.7
Q ss_pred chHHHHHHHhhcchhHHHHHHHHH
Q 005107 401 SPFSEKLKAFIRSTKFGYMISIIL 424 (714)
Q Consensus 401 ~~~r~~~~~iv~~~~f~~~i~~iI 424 (714)
..+|+.|++||+|+||+.+|.++|
T Consensus 216 ~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 216 WNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHhhheeeecccchhheeeeeC
Confidence 578999999999999999988765
No 74
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=57.39 E-value=48 Score=29.80 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHH
Q 005107 306 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 306 ~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
..+..+..+|..++.++.|.++.+....+. + ..........+...|.++++.++.+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345668899999999999999887755443 1 1123456678899999999999999998765
No 75
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.27 E-value=41 Score=39.78 Aligned_cols=121 Identities=10% Similarity=0.149 Sum_probs=84.8
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCc-cchhhh-ehhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 005107 158 GSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN-FLPLRI-APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL 235 (714)
Q Consensus 158 g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~-~~~~r~-~R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~ 235 (714)
..+.|+-+.-|+++.++....++....+.........+ ..++-+ +--.+.++++.+.|..-.-+..+...+++++..+
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~f 666 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKSF 666 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHHH
Confidence 45669999999999887776666433321100000000 011111 2346777888888888777777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhcCCC
Q 005107 236 ALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNN 282 (714)
Q Consensus 236 ~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lfvl~Ttenw 282 (714)
.++.++++-|++--+.+|+...+ |.|.+-|...-++.+=.|+-
T Consensus 667 ~vfs~lliaF~lsFYVll~~~~e----Fs~p~ms~l~t~~MMiGe~d 709 (929)
T KOG0510|consen 667 MVFSILLIAFGLSFYVLLNKSSE----FSNPFMSKLETFVMMIGEND 709 (929)
T ss_pred HHHHHHHHHhhhhheeeecCCCC----cCCCcchhhhhHHHhhcccc
Confidence 99999999999999999988643 99999999999998876643
No 76
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=53.34 E-value=1.1e+02 Score=38.38 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005107 208 VFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT 256 (714)
Q Consensus 208 ~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~ 256 (714)
|=++.+-..+..+++++-++-+.|.--.+|-++++++|||+|+..|++.
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445566788899999999999999999999999999999999999964
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=50.87 E-value=68 Score=28.18 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=45.9
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 378 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~ 378 (714)
.....-|+.++. +.+.++.++...++.+ .+++.+....+|+..|.+++|.++.+||.--.-.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~-------S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMK-------SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHH-------TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHH-------cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 334567777764 4577787777666653 4677889999999999999999999999754443
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=50.84 E-value=1.1e+02 Score=25.75 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHh
Q 005107 323 VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 381 (714)
Q Consensus 323 ~~~~~~~~~~~~~~~-l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~ 381 (714)
.+.++.+....++.. +....+ ...++.+.+.++..+|.++++.++.+||..++..++.
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t-~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLK-KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhc-cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 567777777777753 211111 2344788999999999999999999999888765543
No 79
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.97 E-value=26 Score=38.94 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhHhhee-------------cccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhhe
Q 005107 136 LVYEGITLVILIIHTFFPITY-------------EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (714)
Q Consensus 136 ~~~e~~~~~if~~e~~~k~~~-------------~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~~ 202 (714)
+.+++++=++|.+|++++... .-++.|+++..-.+|++.++.. |++. +.. ......|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~-~~~-----~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLL-FKD-----GSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHh-hcC-----CcchHHHHH
Confidence 667999999999999998651 1234467666667776555443 2211 111 123344555
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005107 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE 254 (714)
Q Consensus 203 R~lR~~~li~~~~~lr~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~ 254 (714)
|.+|..|+...+..+.. +-+.|.+..+..+...++++|=+-|=..|-
T Consensus 104 Rllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf~ 150 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYFL 150 (536)
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 55555555532222111 235577777777777777777777766653
No 80
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=49.30 E-value=87 Score=29.52 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=41.6
Q ss_pred HHHHhhhhccccCcccCHHHHHHHHHHhhhh--------------------------c-cCCCCC-hHHHHHHHhhhccc
Q 005107 311 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKY--------------------------R-TLPNIS-REEFELIFDELDDT 362 (714)
Q Consensus 311 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~--------------------------~-~~~~~s-~~~~~~l~~~ld~~ 362 (714)
+.+||++++.++.+.++++.....+..+.+- . .....+ .+-.-..|...|++
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~ 113 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDE 113 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCcc
Confidence 5789999999988888776544333332110 0 001111 12223446777888
Q ss_pred ccccCChhHHHHHHHHH
Q 005107 363 HDFKINLDEFADLCNAI 379 (714)
Q Consensus 363 ~~~~~~~~ef~~l~~~~ 379 (714)
+.|.++.+.+.+++...
T Consensus 114 ~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 114 GSGKIDEDYLRELLTTM 130 (171)
T ss_pred CCCccCHHHHHHHHHHh
Confidence 88999888887776543
No 81
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=48.43 E-value=41 Score=32.99 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=48.4
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHH----HHHHhhhcccccccCChhHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEF----ELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~----~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
..++=||.+-+..+.|.++.++....+..+-.-.. .. +.+.. +.++.+.|.+++|.++.+||.+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~-~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEND-DM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-cc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45678999999999999999988877766522111 11 23333 356778899999999999998764
No 82
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=47.86 E-value=1.1e+02 Score=32.96 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=43.8
Q ss_pred ccccCChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 594 LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 663 (714)
Q Consensus 594 ~~nF~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~~~~ 663 (714)
-.|.++|..|++--.+..|+=|++.. ..++.-..+.+.+++-.+.++++..+.+|++.-.|..-.
T Consensus 79 v~~~~~f~~aF~FSveT~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 79 VSNVNSFTSAFLFSVETQTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp ECT-TTHHHHHHHHHHHHTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred eecccchhhheeEEEEEEEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 35778999999877777777665431 122333456677778888888899999999888887644
No 83
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=45.81 E-value=1.4e+02 Score=25.55 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=40.5
Q ss_pred CcccCHHHHHHHHH-HhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 323 VGFLNKEQCIKLFE-ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 323 ~~~~~~~~~~~~~~-~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
.+.+++.....+++ .+..+.+. ..++...+.++..+|.++|+.++..||-.+...++
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34566666666543 34444443 33677888999999999999999999987766544
No 84
>PLN02964 phosphatidylserine decarboxylase
Probab=40.57 E-value=66 Score=37.80 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred HHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHH
Q 005107 311 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 378 (714)
Q Consensus 311 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~ 378 (714)
++.+|...+.++.+.++.+.+..++..+. ...+.++....|+..|+++++.++.+|+.+++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 45677778888888888888877777552 2346778999999999999999999999877543
No 85
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=38.33 E-value=2.2e+02 Score=23.13 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHhhccCHHHHHHHHHhhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 598 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 660 (714)
Q Consensus 598 ~~f~~a~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfvavI~e~f~ 660 (714)
.++..|+.--+..+|+-|..|+ .+.....-.+..+..+.++.++.++++.+.+-+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi-------~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDI-------VPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSS-------STSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCc-------cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888877777777666554 3322333444566677777788888888877654
No 86
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=37.62 E-value=95 Score=25.31 Aligned_cols=43 Identities=33% Similarity=0.352 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhcCCCCccc
Q 005107 239 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVW 286 (714)
Q Consensus 239 ~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lfvl~TtenwpdVm 286 (714)
+++++.++.+...+ ++ + ..-.++.+|++--++.+||-|+.|+.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi~ 45 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDIV 45 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSSS
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCcc
Confidence 44555566666665 21 1 33678999999999999999999985
No 87
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=33.93 E-value=1.5e+02 Score=32.48 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=38.7
Q ss_pred HHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHH
Q 005107 307 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 374 (714)
Q Consensus 307 r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~ 374 (714)
|..-.+.-|+.++.++.+.++..+..+.+..+. .|+...+-...++...|.+.++.+|..||.+
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 334466778888888888777666554444442 2333444455566666666666666666643
No 88
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=30.94 E-value=2e+02 Score=31.79 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhc-----------------------------c-------------C
Q 005107 307 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYR-----------------------------T-------------L 344 (714)
Q Consensus 307 r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~-----------------------------~-------------~ 344 (714)
++.-+..+|+..+.++.|.++..+|..-++.+.... . .
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 455588899999888888877776654443321100 0 0
Q ss_pred CCCChHHHHHHHhhhcccccccCChhHHHHHHHHHHhh
Q 005107 345 PNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 382 (714)
Q Consensus 345 ~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~~~ 382 (714)
--.++...+.+|+.+|.++.|.++.+||.+.++....-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 00112234567889999999999999999888776543
No 89
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=29.90 E-value=2e+02 Score=27.25 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=48.9
Q ss_pred HHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHH
Q 005107 308 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 375 (714)
Q Consensus 308 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l 375 (714)
+..+..||...+..+.|.+.......++... .-+.+.++.+.+++.--++..+.++..+|..+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 4457899999999999998887766665553 35788899999999887777778877776544
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=29.86 E-value=1.1e+02 Score=33.74 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=38.9
Q ss_pred HHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHH
Q 005107 308 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 378 (714)
Q Consensus 308 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~ 378 (714)
+..++.+|...|.++.+.++.+.+.. .+.+|..+|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34466777777777777777665420 356789999999999999999877653
No 91
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=29.52 E-value=2.7e+02 Score=25.98 Aligned_cols=62 Identities=31% Similarity=0.389 Sum_probs=41.4
Q ss_pred hHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHH----HhhhcccccccCChhHHHHH
Q 005107 310 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELI----FDELDDTHDFKINLDEFADL 375 (714)
Q Consensus 310 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l----~~~ld~~~~~~~~~~ef~~l 375 (714)
...-||..-+-++.+++.......-...+ ++...+.++.+.+ .++-|-+++++++..||+..
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~l----Tr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSL----TRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHH----hhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 34567877777777777654433333333 2356777777654 55667789999999999865
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=28.39 E-value=58 Score=19.39 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=19.0
Q ss_pred HHHHHhhhcccccccCChhHHHHHH
Q 005107 352 FELIFDELDDTHDFKINLDEFADLC 376 (714)
Q Consensus 352 ~~~l~~~ld~~~~~~~~~~ef~~l~ 376 (714)
.+.++...|.++++.++.++|....
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 3456778888888889888887654
No 93
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=27.31 E-value=1.6e+02 Score=27.24 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005107 644 VLLLLNLVIAFVLEAFFAEMELE 666 (714)
Q Consensus 644 ~~i~lnLfvavI~e~f~~~~~~~ 666 (714)
++.++|.|+|++.-.|....+..
T Consensus 65 giyLLn~flaFLTPKfdms~eq~ 87 (180)
T COG5249 65 GIYLLNAFLAFLTPKFDMSFEQI 87 (180)
T ss_pred HHHHHHHHHHHhCCCCcccHhhh
Confidence 44589999999988887764433
No 94
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=26.02 E-value=1.7e+02 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005107 631 WTLAYFVSFYLITVLLLLNLVIAFVLEAFF 660 (714)
Q Consensus 631 ~~~iyFi~f~ll~~~i~lnLfvavI~e~f~ 660 (714)
.+...|.+|..++.+++|=++.+-|++.=.
T Consensus 13 l~K~~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 13 LTKIMFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 456677778888888888788888876543
No 95
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=1.4e+02 Score=28.66 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 005107 645 LLLLNLVIAFVLEA 658 (714)
Q Consensus 645 ~i~lnLfvavI~e~ 658 (714)
+-.||+|+|++.-.
T Consensus 72 IYlLNlfiaFLtPk 85 (188)
T KOG1688|consen 72 IYLLNLFIAFLTPK 85 (188)
T ss_pred HHHHHHHHHHhCCC
Confidence 33899999998765
No 96
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.92 E-value=5.1e+02 Score=25.99 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=51.9
Q ss_pred HhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHHHHHHHhhhcccccccCChhHHHHHHHHHH
Q 005107 309 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 380 (714)
Q Consensus 309 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~ld~~~~~~~~~~ef~~l~~~~~ 380 (714)
..+++.|.--|.++.+.+++.+....+..+ .=.++..-.+.+.+..|+.+.+.++.++|.+.|..+.
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-----Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQL-----GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHc-----CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 346777888888888888888777666655 2356667777888888888899999999998887654
No 97
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.58 E-value=8.3e+02 Score=28.40 Aligned_cols=138 Identities=18% Similarity=0.191 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhHhh---ee-----------cccccccccccccchhhHHHHHHHHHHHHhhhcCCcCCccchhhh
Q 005107 136 LVYEGITLVILIIHTFFPI---TY-----------EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 201 (714)
Q Consensus 136 ~~~e~~~~~if~~e~~~k~---~~-----------~g~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~s~~~~~~~~~r~ 201 (714)
+++|++|=+|+.+++++-- -+ ...+.|.++..-.+|++-++.. | ++|+.. +....+|+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--d-llY~~~-----G~~p~wR~ 335 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--D-LLYLFF-----GFNPMWRA 335 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--H-HHHHHh-----ccchhhhh
Confidence 6789999999999987531 11 1234577777777776554433 2 233332 11123444
Q ss_pred ehhhhHHHHhhccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccccccccchHHHH-----HHH
Q 005107 202 APYIRVVFFILNIRQLRDTLFV--LAGMLGTYLNVLALGLLFLLF-SSWLAYVIFEDTVQGNMVFTSFGTTL-----YQM 273 (714)
Q Consensus 202 ~R~lR~~~li~~~~~lr~~~~~--l~~~l~~i~~v~~l~~l~~~~-fAi~g~~lF~~~~~~~~~F~~~~~s~-----~~l 273 (714)
=|.|..--+.-..+.+-.++.. +.+.+++..+++..+=+--++ |..-++|-+|-+. =.|++-||+. |+.
T Consensus 336 ~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~r---WVydg~Gn~YiRCyyfa~ 412 (815)
T KOG0499|consen 336 NRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTR---WVYDGEGNEYIRCYYFAV 412 (815)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccce---eEEcCCCCceeeehhhHH
Confidence 4444332222223333333321 123334444433333222222 3445666676431 1133333332 233
Q ss_pred HHHHhcCCCCc
Q 005107 274 FVLFTTSNNPD 284 (714)
Q Consensus 274 fvl~Ttenwpd 284 (714)
=.+.|+-|.|+
T Consensus 413 kt~~tiG~~P~ 423 (815)
T KOG0499|consen 413 KTLITIGGLPE 423 (815)
T ss_pred HHHHHhcCCCC
Confidence 35566677776
No 98
>PLN02964 phosphatidylserine decarboxylase
Probab=21.78 E-value=2.6e+02 Score=33.00 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=44.2
Q ss_pred HHhHHHHhhhhccccCcccCHHHHHHHHHHhhhhccCCCCChHH---HHHHHhhhcccccccCChhHHHHHHHHH
Q 005107 308 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 379 (714)
Q Consensus 308 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~---~~~l~~~ld~~~~~~~~~~ef~~l~~~~ 379 (714)
...+.+||+.+|.++.+.+ ....+..+.. ...+..+ .+.++...|.++++.++.+||.+++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3457889999999887764 3333333311 1223333 5788999999999999999999887643
No 99
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.24 E-value=2e+02 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005107 640 YLITVLLLLNLVIAFVLEAFFAEMELE 666 (714)
Q Consensus 640 ~ll~~~i~lnLfvavI~e~f~~~~~~~ 666 (714)
.+++.++++.+|.-+=+.-|+...+..
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778887666566666654433
Done!