BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005108
(714 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ RGN F ++ F EA + Y + DP+ V Y N +AC+ G E+ +E + +AL I
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVL 574
+P+++KALLRRA++N L + DA+ D VL
Sbjct: 89 KPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
A +LK GN + F EA+ Y AI L G + + ++ +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357
A+ + P++ +A R S LG +A L + D ++E++L+K
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK 140
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ RGN F ++ F EA + Y + DP+ V Y N +AC+ G E+ +E + +AL I
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 84
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVL 574
+P+++KALLRRA++N L + DA+ D VL
Sbjct: 85 KPDHSKALLRRASANESLGNFTDAMFDLSVL 115
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
A +LK GN + F EA+ Y AI L G + + ++ +
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357
A+ + P++ +A R S LG +A L + D ++E++L+K
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK 136
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ GN+ K E F A YG+ + +P+N+V +CNRAA + KLG + +V+D +A+ I
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598
P Y+KA R + S L K +AV ++ PD+ +L A++ L+++
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKEC 299
+AE LK GNE + F A+ Y KAI L + LG AV++C
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQ 325
E A+ +DP Y +A+ R+G L L +
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNK 95
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRF--DPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ +GN F+++++ +A + Y L DP V Y N +AC+ +G ++ VE S +AL
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKEDP---VFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574
++P+Y+K LLRRA++N L K+ADA+ D VL
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 24/193 (12%)
Query: 245 LKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVR 304
LK GN+ +R + +A+ Y+ A+ L ++ +G + + V+ +A+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVS-VGDLKKVVEMSTKALE 67
Query: 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKV 364
L P+Y + R S LG+ +A L + D + ++E++L+K + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK----QAM 123
Query: 365 GDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ 424
K + D A A + S Q + R + N+P + +S
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKER-------------KDKQENLPSV------TSM 164
Query: 425 TRFFGMLSEAYTF 437
FFG+ TF
Sbjct: 165 ASFFGIFKPELTF 177
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 60/105 (57%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN+ FK + A + Y E ++ DP N++LY NRAAC KL +++R+++D + + +
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588
+ K +R+AA + +W+ A R +E + P + E E +
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
A+E K GNE ++KG + A+ Y++A+ LT L A+ +C+
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343
+RLD + + + R + LV + + A+R Q DP+
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAY-EDALQVDPS 113
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
Y K RRAASN L K+ A+RD+E + + P D +
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 109
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+ +
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
Y K RRAASN L K+ A+RD+E + + P D +
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 124
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+ +
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
Y K RRAASN L K+ A+RD+E + + P D +
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V+ V+S +F + +S + +V F + CK+I+P+ E Y + F+KVD+DE
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 69
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
V EN+ +PTFK+YKNGS + ++ + L+ + Y+
Sbjct: 70 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN+ F+ + +A + Y E ++ +P ++ LY NRAAC+ KL +++ +++D + + +
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587
+P + K R+AA+ LE D + +V ++ L D+ E+
Sbjct: 80 EPTFIKGYTRKAAA---LEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 245 LKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVR 304
+K GNE ++KG + +A+ Y +AI T L A+K+CEE ++
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 305 LDPNYWRAHQRLGSLL 320
L+P + + + R + L
Sbjct: 79 LEPTFIKGYTRKAAAL 94
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 58/105 (55%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN +A Q Y E ++ DP N VLY NR+A + K G ++++ ED + + +
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588
+P++ K R+AA+ L ++ +A R +E + ++ ++ E L
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 244 ELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAV 303
ELK GN+ G +AL Y +AI L G +A ++ + V
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 304 RLDPNYWRAHQRLGSLLVRLGQVENARR 331
L P++ + + R + L L + E A+R
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAKR 93
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
+ VA V+ PTF+ +K G ++ E +++ LE ++
Sbjct: 62 AQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
+ ++++L +FR + V+ F + CK + P++ L YP + F+K D+DESP
Sbjct: 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP 73
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710
+A V +PTF + K+G + +I+ + LE ++
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 112
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V + + +F +A++ + VV F + CK I+P +E +YP +F K+D+DE
Sbjct: 2 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 61
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT ++KNG + ++V
Sbjct: 62 DVAQKNEVSAMPTLLLFKNGKEVAKVV 88
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V + + +F +A++ + VV F + CK I+P +E +YP +F K+D+DE
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT ++KNG + ++V
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVV 94
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + K I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
S VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 SQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVND 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVD 666
G V+ +SS +QF+ V V+ F + CK I P E + P+ + F KVD
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVD 73
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
+DE +A +R +PTF +KNG ++ +V L+ ++ +S
Sbjct: 74 VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHS 120
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + K I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
+ VA V+ PTF+ +K G ++ E +++ LE ++
Sbjct: 62 AQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN 678
E F + VV F ++ CK I+P L ++P++ FLKVD+DE VA N
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN 76
Query: 679 VRIVPTFKIYKNGSRMKEIVCPSRDML 705
V +PTF K+G + + V +D L
Sbjct: 77 VEAMPTFIFLKDGKLVDKTVGADKDGL 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + + K I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 487 GNDLFKSERFTEACQAYGEGLRF----------------DPSNSVLYCNRAACWFKLGQW 530
GN FKS+ + A + Y + LR+ P N AC K+ W
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 531 ERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590
+ +V+ +AL I P+ TKAL RRA L+++ A+ D + + P+D I L
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349
Query: 591 AQVSLKKSRGEE 602
+ +K + +E
Sbjct: 350 VKQKIKAQKDKE 361
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 610 GEVEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI 667
G V+++ S F+ A+ G + VV F + K I P+ +L +Y ++ FL+VD+
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDV 70
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
D+ VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 71 DDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 56/106 (52%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
GN +K + +A + Y + L DP+N+ + N ++K G +++++E +AL + PN
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
KA RR + K + A+ D++ P++ + ++L +A+
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G AE K +GN Y++G + +A+ Y KA+ L G +A++
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++A+ LDPN +A R G+ + G + A
Sbjct: 66 YQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+A +GN Y++G + +A+ Y KA+ L G +A+++ +
Sbjct: 42 NASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQ 101
Query: 301 EAVRLDPNYWRAHQRLGS 318
+A+ LDPN +A Q LG+
Sbjct: 102 KALELDPNNAKAKQNLGN 119
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + K I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V + + +F +A++ + VV F + K I+P +E +YP +F K+D+DE
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG 67
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT ++KNG + ++V
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVV 94
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNG 691
+ VA +R +PT ++KNG
Sbjct: 62 AQDVAPKYGIRGIPTLLLFKNG 83
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN 678
EQ + A + VV F ++ C+ I+P+ L + P++ FLKVD DE VA
Sbjct: 29 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA 88
Query: 679 VRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
++ +PTF K G + ++V +D L+ ++
Sbjct: 89 IQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
R G + F + A +AY E ++ P ++ Y NRAA KL + ++ D N+A+
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575
PN+ +A +R+A + ++++A A+ + R
Sbjct: 68 DPNFVRAYIRKATAQIAVKEYASALETLDAAR 99
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AEE + G E + K + A+ Y + I L L EA+ +C +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ DPN+ RA+ R + + + + +A
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASA 91
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPS---NSVLYCNRAACWFKLGQWERSVEDSNQA 540
R GN+LFK + A AY + L D + +VL+ NRAAC KL ++++ ++++A
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ KAL RR+ + KL + AV D +
Sbjct: 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQ 123
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 243 EELKRMGNELYRKGCFGEALSMYDKAISL 271
E+L++ GNEL++ G +G AL+ Y +A+ L
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGL 57
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689
V ++ F ++ C+ I+P ++P FLKVD+DE VA NV +PTF K
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 690 NGSRMKEIVCPSRDMLEHSV 709
+G+ ++V +D L++++
Sbjct: 98 DGAEADKVVGARKDDLQNTI 117
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
++ GN + +++A Y + L P+N + NRAA + GQ E++ ED+ A ++
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 544 QPNYTKALLR 553
P Y+KA R
Sbjct: 75 DPKYSKAWSR 84
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
++++LK GN + + +A+ +Y +A+S+ + G+ +A ++ E
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 301 EAVRLDPNYWRAHQRLG 317
A +DP Y +A RLG
Sbjct: 70 LATVVDPKYSKAWSRLG 86
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 609 GGEVEEVSSLEQFRAAVSLPG----VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLK 664
GG V +++ E++ +S + + +F + CKQI+PY L YPS+ FL
Sbjct: 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLV 82
Query: 665 VDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+D+DE + + ++ PTF ++G ++ ++V
Sbjct: 83 IDVDELSDFSASWEIKATPTFFFLRDGQQVDKLV 116
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 611 EVEEV--SSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDI 667
EV++V SS ++F +P +V F + CK I+P ++ L Y I K++
Sbjct: 1 EVQDVNDSSWKEFVLESEVP--VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNT 58
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIV-CPSRDMLEHSVRHY 712
DE+PG+A N+R +PT +KNG R + I+ + L S+ Y
Sbjct: 59 DEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 104
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
R G + F + A +AY E ++ P ++ Y NRAA KL + ++ D N+A+
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575
PN+ +A +R+A + ++++A A+ + R
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AEE + G E + K + A+ Y + I L L EA+ +C +
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ DPN+ RA+ R + + + + +A
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASA 226
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
++ F ++ C+ I+P ++P FLKVD+DE VA A NV +PTF K+G
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91
Query: 692 SRMKEIVCPSRD 703
++ +V +D
Sbjct: 92 EKVDSVVGGRKD 103
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V +V S+EQFR +S ++V F + CK I +E + +P++ F KVD D +
Sbjct: 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS 80
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710
+ V +PTF I ++G + ++ + ML +R
Sbjct: 81 EIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 119
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV-CP 700
CK I+P ++ L Y I K++ DE+PG+A N+R +PT +KNG R + I+
Sbjct: 32 CKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAV 91
Query: 701 SRDMLEHSVRHY 712
+ L S+ Y
Sbjct: 92 PKSTLTDSIEKY 103
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN LF ++ EA YG + +P +V Y NRA C+ K+ Q E+++ D +AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFE 572
KA ++E + +A+ + +
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQ 96
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
A+ELK GN L+ + EA + Y +AI+ + + +A+ +C
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ LD +AH LG + + + A
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEA 91
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+ V S F+ +S G ++VV F C +I+P ++ +YP FL+VD+ +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
G A N+ PTF+ ++N R+ + LE ++ +
Sbjct: 63 CQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN LF ++ EA YG + +P +V Y NRA C+ K+ Q E+++ D +AL +
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFE 572
KA ++E + +A+ + +
Sbjct: 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQ 101
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
A+ELK GN L+ + EA + Y +AI+ + + +A+ +C
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ LD +AH LG + + + A
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEA 96
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V +V E F ++ G + V+ F + CK I+P +E L + FLKVD+DE
Sbjct: 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDE 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDML 705
+A + +PTF KNG ++ + + D L
Sbjct: 62 CEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
+V F +A C+QI+P +E + Y I +K++IDE+PG A V +PT +Y+
Sbjct: 27 LVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQG 86
Query: 691 GSRMKEIV 698
G K IV
Sbjct: 87 GEVAKTIV 94
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 602 EVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSIN 661
E+ +K G++E S LEQ + + VV F + CK I+P + L +Y +I
Sbjct: 14 ELIELKQDGDLE--SLLEQHKNKLV-----VVDFFATWCGPCKTIAPLFKELSEKYDAI- 65
Query: 662 FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
F+KVD+D+ A N+ +PTF KNG ++ ++V S +E ++ +
Sbjct: 66 FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 116
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
GV +V F + + CK I+P +E L Y + LK+D+DE+P A V +PT +
Sbjct: 20 GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV 79
Query: 688 YKNGSRMKEIVC--PSRDMLEHSVRH 711
+K+G + ++V P ++ E +H
Sbjct: 80 FKDGQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 XQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 487 GNDLFKSERFTEACQAY-------GEGLRF-------DPSNSV---LYCNRAACWFKLGQ 529
GN LFK E+ EA Q Y G+ F D + +V + N AAC KL +
Sbjct: 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245
Query: 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL- 588
++ ++ N L + KAL RR + ++L + A DF ++ PDD I L
Sbjct: 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305
Query: 589 -FHAQVSLKKSRGEEVYNMKFGGEVE 613
Q + +E+Y F G+ E
Sbjct: 306 ALAEQEKALYQKQKEMYKGIFKGKDE 331
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
GV +V F + CK I+P +E L Y + LK+D+DE+P A V +PT +
Sbjct: 20 GVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV 79
Query: 688 YKNGSRMKEIVC--PSRDMLEHSVRH 711
+K+G + ++V P ++ E +H
Sbjct: 80 FKDGQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 611 EVEEV--SSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDI 667
EV++V SS ++F +P +V F + K I+P ++ L Y I K++
Sbjct: 1 EVQDVNDSSWKEFVLESEVP--VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNT 58
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIV-CPSRDMLEHSVRHY 712
DE+PG+A N+R +PT +KNG R + I+ + L S+ Y
Sbjct: 59 DEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 104
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 484 RARGNDLFKSERFTEACQAYGEGL------------------RFDPSNSVLYCNRAACWF 525
R +GN+LF + + EA AY + L D N LY N + C+
Sbjct: 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 526 KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579
+G + E S++ L + KAL RRA + K +A D ++L R P
Sbjct: 75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
GV +V F + CK I+P +E L Y + LK+D+DE+P A V +PT +
Sbjct: 21 GVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 688 YKNGSRMKEIVC--PSRDMLEHSVRH 711
+K+G + ++V P ++ E +H
Sbjct: 81 FKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 611 EVEEVSSLEQF----RAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD 666
EV V SLEQ+ A + + V+ F ++ C+ ++P L ++P+ FLKVD
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
+DE +A +V +PTF K G +V ++ L V
Sbjct: 73 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 606 MKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKV 665
+K G++E S LEQ + + VV F + CK I+P + L +Y +I F+KV
Sbjct: 9 LKQDGDLE--SLLEQHKNKLV-----VVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKV 60
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
D+D+ A N+ +PTF KNG ++ ++V S +E ++ +
Sbjct: 61 DVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 107
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
GV +V F + CK I+P +E L Y + LK+D+DE+P A V +PT +
Sbjct: 21 GVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 688 YKNGSRMKEIVC--PSRDMLEHSVRH 711
+K+G + ++V P ++ E +H
Sbjct: 81 FKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/380 (19%), Positives = 154/380 (40%), Gaps = 29/380 (7%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKEC 299
D E+ +G +L G +ALS + A+ +G+ A+ +
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENAR---RHLCLSGQQADPTEVHRLQVV----- 351
+ ++L ++ A + G LL++ G+++ A + + S + + + Q++
Sbjct: 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143
Query: 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
++ S+ +A GD+ +A+ D + + +L R E +K + A S L
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 412 IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXX 471
K++ + T F +S Y LG E +++ + ++D
Sbjct: 203 ASKLK-----NDNTEAFYKISTLY---------YQLGDHELSLSEVRECLKLDQDHKRCF 248
Query: 472 XXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA-----CWFK 526
+L + R+T+A Y ++ +PS + Y R+ C+ K
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE-YTVRSKERICHCFSK 307
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
+ ++ ++ L ++P+ AL RA + E + +A++D+E + +D +I E
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367
Query: 587 SLFHAQVSLKKSRGEEVYNM 606
L AQ LK+S+ + Y +
Sbjct: 368 GLEKAQRLLKQSQKRDYYKI 387
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES 670
V ++ S ++ +A+ S + VV F + CK I+P +E +Y F K+D+DE
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEV 61
Query: 671 PGVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT YK G + +V
Sbjct: 62 SDVAQKAEVSSMPTLIFYKGGKEVTRVV 89
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES 670
V ++ S ++ +A+ S + VV F + CK I+P +E +Y F K+D+DE
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEV 68
Query: 671 PGVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT YK G + +V
Sbjct: 69 SDVAQKAEVSSMPTLIFYKGGKEVTRVV 96
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 609 GGEVEEVSSLEQFRAAVSLPG----VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLK 664
GG V +++ E++ +S + + +F + +QI+PY L YPS+ FL
Sbjct: 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV 82
Query: 665 VDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+D+DE + + ++ PTF ++G ++ ++V
Sbjct: 83 IDVDELSDFSASWEIKATPTFFFLRDGQQVDKLV 116
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 53/106 (50%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
GN +K + EA + Y + L DP+N+ + N ++K G ++ ++E +AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
+A + K + +A+ ++ P++ E ++L +A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G AE +GN Y++G + EA+ Y KA+ L G EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++A+ LDPN A LG+ + G + A
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+AE +GN Y++G + EA+ Y KA+ L G EA++ +
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 301 EAVRLDPNYWRAHQRLGS 318
+A+ LDPN A Q LG+
Sbjct: 102 KALELDPNNAEAKQNLGN 119
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
CK ++P E L Y + FLK+D + E+ +A +R+VPTFKI K S + E+
Sbjct: 40 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99
Query: 702 RDMLEHSVR 710
D L +++
Sbjct: 100 YDKLLEAIQ 108
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
CK ++P E L Y + FLK+D + E+ +A +R+VPTFKI K S + E+
Sbjct: 52 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111
Query: 702 RDMLEHSVR 710
D L +++
Sbjct: 112 YDKLLEAIQ 120
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689
++VV F + C ++P +E L YP + F K++ DE+P +A V +PT +K
Sbjct: 18 IAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFK 77
Query: 690 NGSRMKEIV 698
+G + EI+
Sbjct: 78 DGEPVDEII 86
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P V+ + G Y + +K++ DESP VA +R +PT ++K G + + I+
Sbjct: 34 CRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETII 90
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSR 702
C+ I+P VE L P + F KVD+D++ A +V +PTF K+G + +
Sbjct: 34 CRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANE 93
Query: 703 DMLEHSV-RH 711
L ++ RH
Sbjct: 94 TKLRETITRH 103
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
G +V F + HCK I+P ++ + Y + K++ID++PG A +R +PT +
Sbjct: 21 GAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 688 YKNG 691
+KNG
Sbjct: 81 FKNG 84
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
CK ISP + L ++ ++ LKVD+DE +A N+ +PTF KNG +++E +
Sbjct: 40 CKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 99
Query: 702 RDMLEHSVR 710
LE ++
Sbjct: 100 AKRLEDVIK 108
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
CK ISP + L ++ ++ LKVD+DE +A N+ +PTF KNG +++E +
Sbjct: 35 CKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGAN 94
Query: 702 RDMLEHSVR 710
LE ++
Sbjct: 95 AKRLEDVIK 103
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEA 295
G C A+ L + N +G EA+ +Y KA+ + L G++ EA
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 296 VKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
+ +EA+R+ P + A+ +G+ L + V+ A
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 290 GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRH 332
G I EAV+ +A+ + P + AH L S+L + G+++ A H
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G AE +GN Y++G + EA+ Y KA+ L G EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 299 CEEAVRLDPNYWRAHQRLGS 318
++A+ LDPN A Q LG+
Sbjct: 66 YQKALELDPNNAEAKQNLGN 85
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
GN +K + EA + Y + L DP+N+ + N ++K G ++ ++E +AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 547 YTKA 550
+A
Sbjct: 76 NAEA 79
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
VVHF + C Q++ + L P ++F+K++ + P V+ + VPTF +KN
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 101
Query: 692 SRMKEI 697
++ +
Sbjct: 102 QKIDRL 107
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 52/106 (49%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
GN +K + EA + Y + L P+N+ + N ++K G ++ ++E +AL + PN
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
+A + K + +A+ ++ P++ E ++L +A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G AE +GN Y++G + EA+ Y KA+ L G EA++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++A+ L PN A LG+ + G + A
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+AE +GN Y++G + EA+ Y KA+ L G EA++ +
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 301 EAVRLDPNYWRAHQRLGS 318
+A+ L PN A Q LG+
Sbjct: 102 KALELYPNNAEAKQNLGN 119
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
C+ +SP +E L + + +KV++DE PG+A VR VPT +++ G+ + V S
Sbjct: 65 CRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGAS 124
Query: 702 -RDMLEHSVRHY 712
R +LE +R Y
Sbjct: 125 PRRVLEERLRPY 136
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/380 (19%), Positives = 151/380 (39%), Gaps = 29/380 (7%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKEC 299
D E+ +G +L G +ALS + A+ G+ A+ +
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL 83
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENAR---RHLCLSGQQADPTEVHRLQVV----- 351
+ ++L ++ A + G LL++ G+++ A + + S + + + Q++
Sbjct: 84 TKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEX 143
Query: 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
++ S+ +A GD+ +A+ D + + +L R E +K + A S L
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 412 IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXX 471
K++ + T F +S Y LG E +++ + ++D
Sbjct: 203 ASKLK-----NDNTEAFYKISTLY---------YQLGDHELSLSEVRECLKLDQDHKRCF 248
Query: 472 XXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA-----CWFK 526
+L + R+T+A Y + +PS + Y R+ C+ K
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAE-YTVRSKERICHCFSK 307
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
+ ++ ++ L +P+ AL RA + E + +A++D+E + +D +I E
Sbjct: 308 DEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIRE 367
Query: 587 SLFHAQVSLKKSRGEEVYNM 606
L AQ LK+S+ + Y +
Sbjct: 368 GLEKAQRLLKQSQKRDYYKI 387
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
VVHF + C Q++ + L P ++F+K++ + P V+ + VPTF +KN
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNS 95
Query: 692 SRM 694
++
Sbjct: 96 QKI 98
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
GV +V F + K I+P +E L Y + LK+D+DE+P A V +PT +
Sbjct: 21 GVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 688 YKNGSRMKEIVC--PSRDMLEHSVRH 711
+K+G + ++V P ++ E +H
Sbjct: 81 FKDGQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 611 EVEEVSSLEQF----RAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD 666
EV V SLEQ+ A + + V+ F ++ + ++P L ++P+ FLKVD
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
+DE +A +V +PTF K G +V ++ L V
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--- 543
GND +K + F A + Y + DP+N N+AA +F+ G + + E +A+ +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 544 -QPNY---TKALLRRAASNSKLEKWADAV 568
+ +Y KA R S K EK+ DA+
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G A + K +GN+ Y+K F AL YDKA L G + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLG 324
CE+A+ + ++++ R+G
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIG 86
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--- 543
GND +K + F A + Y + DP+N N+AA +F+ G + + E +A+ +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 544 -QPNY---TKALLRRAASNSKLEKWADAV 568
+ +Y KA R S K EK+ DA+
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKE 298
G A + K +GN+ Y+K F AL YDKA L G + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLG 324
CE+A+ + ++++ R+G
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIG 86
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P +E + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFL-KVDIDESPGVAHAENVRIVPTFKIYKN 690
+ +F S + HC Q++P +E+L +Y L K+D D +A +R +PT +++N
Sbjct: 30 LFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQN 89
Query: 691 GS 692
G
Sbjct: 90 GQ 91
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES 670
V ++ S ++ +A+ S + VV F + K I+P +E +Y F K+D+DE
Sbjct: 10 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEV 69
Query: 671 PGVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT YK G + +V
Sbjct: 70 SDVAQKAEVSSMPTLIFYKGGKEVTRVV 97
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES 670
V ++ S ++ +A+ S + VV F + K I+P +E +Y F K+D+DE
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEV 61
Query: 671 PGVAHAENVRIVPTFKIYKNGSRMKEIV 698
VA V +PT YK G + +V
Sbjct: 62 SDVAQKAEVSSMPTLIFYKGGKEVTRVV 89
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
G +V F + + CK I+P ++ + Y + K++ID++PG A +R +PT +
Sbjct: 21 GAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 688 YKNG 691
+KNG
Sbjct: 81 FKNG 84
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFL-KVDIDESPGVAHAENVRIVPTFKIYKN 690
+ +F S + HC Q++P +E+L +Y L K+D D +A +R +PT +++N
Sbjct: 30 LFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQN 89
Query: 691 GS 692
G
Sbjct: 90 GQ 91
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 644 KQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSR 702
K ++P E L Y + FLK+D + E+ +A +R+VPTFKI K S + E+
Sbjct: 40 KAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 99
Query: 703 DMLEHSVR 710
D L +++
Sbjct: 100 DKLLEAIQ 107
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ +GN LFK + EA Y + + P N V Y N+A KLG++ ++++ Q L
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 243 EELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEA 302
E+ K GN L+++G + EA+ YD+ I+ L LG +A++ C++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 303 VR 304
+R
Sbjct: 65 LR 66
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFKNG 84
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN 678
+ F ++ + VV F + C ++P +E L YP + F K++ +ES +A
Sbjct: 14 KNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYG 73
Query: 679 VRIVPTFKIYKNGSRMKEIV 698
+ +PT +KNG + +I+
Sbjct: 74 IMSLPTIMFFKNGELVDQIL 93
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 44/254 (17%)
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ--VVEKHLSKCT 359
A++ +P A+ LG++ GQ++ A H RL+ ++ +++
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY---------RHALRLKPDFIDGYINLAA 109
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA--LLK-LHQLEDAESSLSNIPKIE 416
GD + A++ A + ++P L R + LLK L +LE+A++ + +
Sbjct: 110 ALVAAGDMEGAVQ----AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXXXXXXX 476
P+ + G + F + +I +A+ FE AVT +DP
Sbjct: 166 PNFAVAWSN--LGCV-----FNAQGEIWLAIHHFEKAVT-------LDPNFLDAYINL-- 209
Query: 477 XXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
GN L ++ F A AY L P+++V++ N A +++ G + +++
Sbjct: 210 ----------GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 537 SNQALLIQPNYTKA 550
+A+ +QP++ A
Sbjct: 260 YRRAIELQPHFPDA 273
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 212 ATSVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL 271
A ++K GS+A + N +C A+ L + N +G EA+ +Y KA+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 272 XXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320
L G++ EA+ +EA+R+ P + A+ +G+ L
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDP 307
+GN L G EA + Y KAI G I A+ E+AV LDP
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 308 NYWRAHQRLGSLL 320
N+ A+ LG++L
Sbjct: 201 NFLDAYINLGNVL 213
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDP 307
+ N L KG EA Y+ A+ L G I EAV+ +A+ + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 308 NYWRAHQRLGSLLVRLGQVENARRH 332
+ AH L S+L + G+++ A H
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMH 361
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AE +GN +G EA+ Y A+ L L G + AV+
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENAR 330
A++ +P+ + LG+LL LG++E A+
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAK 155
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
VV F + CK I+P ETL Y + FLKVD+D VA A + +PTF +YK+
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 691 GSRMKEIVCPSRDMLEHSVRHYS 713
G + ++V S+D L+ V ++
Sbjct: 88 GVKADDLVGASQDKLKALVAKHA 110
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
VV F + CK I+P ETL Y + FLKVD+D VA A + +PTF +YK+
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKD 87
Query: 691 GSRMKEIVCPSRDMLEHSVRHYS 713
G + ++V S+D L+ V ++
Sbjct: 88 GVKADDLVGASQDKLKALVAKHA 110
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 50 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 45 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 94
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 36 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 85
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--- 543
GND +K + F A + Y + DP+N N+AA +F+ G + + E +A+ +
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 544 -QPNY---TKALLRRAASNSKLEKWADAV 568
+ +Y A R S K EK+ DA+
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEKYKDAI 99
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A +R PT ++KNG
Sbjct: 36 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLLLFKNG 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
C+ I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 75/373 (20%), Positives = 142/373 (38%), Gaps = 29/373 (7%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKEC 299
D E+ +G +L G +ALS + A+ G+ A+ +
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL 60
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCL------SGQQADPTEVHRLQVVEK 353
+ + L ++ A + G LL++ G+++ A S Q+ E ++ E
Sbjct: 61 TKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEX 120
Query: 354 H--LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
S+ DA D+ +A+ D + + +L R E +K + A S L
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 412 IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXX 471
K++ S T F +S Y LG E +++ + ++D
Sbjct: 180 ASKLK-----SDNTEAFYKISTLY---------YQLGDHELSLSEVRECLKLDQDHKRCF 225
Query: 472 XXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA-----CWFK 526
+L + R+T+A Y + +PS + Y R+ C+ K
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAE-YTVRSKERICHCFSK 284
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
+ ++ ++ L +P+ AL RA + E + +A++D+E + +D +I E
Sbjct: 285 DEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIRE 344
Query: 587 SLFHAQVSLKKSR 599
L AQ LK+S+
Sbjct: 345 GLEKAQRLLKQSQ 357
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AE +GN Y++G + EA+ Y KA+ L G EA++ ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ LDP A LG+ + G + A
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AE +GN Y++G + EA+ Y KA+ L G EA++ ++
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A+ LDP A LG+ + G + A
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEE 301
AE +GN Y++G + EA+ Y KA+ L G EA++ ++
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Query: 302 AVRLDP 307
A+ LDP
Sbjct: 129 ALELDP 134
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVET----LCGRYPSINFLKVD 666
EV V + E F V+ + +V F + HCK+++P E L R P I KVD
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189
Query: 667 IDESPGVAHAENVRIVPTFKIYKNG 691
+A +V PT KI++ G
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKG 214
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 642 HCKQISPYVETLCG----RYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694
HCKQ +P E + + P I K+D + +A +V PT KI K G +
Sbjct: 46 HCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAV 102
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVET----LCGRYPSINFLKVDIDESPGVA 674
+ F V+ + +V F + HCK+++P E L R P I KVD E +A
Sbjct: 15 DNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLA 74
Query: 675 HAENVRIVPTFKIYKNG 691
+V PT KI++ G
Sbjct: 75 KRFDVSGYPTLKIFRKG 91
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCG-RYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P +E + R + K+D+D +P A V +PT ++K+G +K IV
Sbjct: 45 CKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIV 101
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCG-RYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P +E + R + K+D+D +P A V +PT ++K+G +K IV
Sbjct: 40 CKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIV 96
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
VV F S + +CK PY E Y S F +++I +P A V+ PTFK + +
Sbjct: 28 VVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCH 87
Query: 691 GSRMKEIV---CPS------RDMLEH 707
G + E V PS RD L+H
Sbjct: 88 GRPVWEQVGQIYPSILKNAVRDXLQH 113
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+P ++ + Y + K++ID++PG A R +PT ++KNG
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTLLLFKNG 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 644 KQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
K I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 36 KMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 644 KQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
K I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 36 KMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 644 KQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
K I+P ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 56 KMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 643 CKQISP-YVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
C+ +P + ET R + F+KV+ + P ++ +R +PT +Y+NG
Sbjct: 70 CRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRNG 119
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKEC 299
G AE +GN Y++G + EA+ Y KA+ L G EA++
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 300 EEAVRLDP 307
++A+ LDP
Sbjct: 61 QKALELDP 68
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
CK I+ ++ + Y + K++ID++PG A +R +PT ++KNG
Sbjct: 35 CKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 36.2 bits (82), Expect = 0.071, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
GN +K + F +A Y + + DPSN Y N+AA +F+ ++ V+ +A+
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 246 KRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRL 305
K +GN Y++ F +A YDKAI L + E V+ CE+AV +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 306 DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ--------ADPTEVHRLQVVEK 353
++ + + R G + L L+ Q DP V +++ +EK
Sbjct: 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEK 127
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P +E + Y + K+D+DE+P A V +PT ++K+G ++ +V
Sbjct: 34 CRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLV 90
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P +E + Y + K+D+DE+P A V +PT ++K+G ++ +V
Sbjct: 33 CRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLV 89
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENV 679
F+ A+ G +V F +A C+ ++P +E + + K+++DE+P +
Sbjct: 10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 680 RIVPTFKIYKNGSRMKEIV 698
+PT ++K G +K+++
Sbjct: 70 MSIPTLILFKGGEPVKQLI 88
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENV 679
F+ A+ G +V F +A C+ ++P +E + + K+++DE+P +
Sbjct: 10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 680 RIVPTFKIYKNGSRMKEIV 698
+PT ++K G +K+++
Sbjct: 70 MSIPTLILFKGGRPVKQLI 88
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRF--------------DPSNSVLYCNR--AACWFKL 527
+ GN+ FK EA Y E L F N + CN A C+ K
Sbjct: 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587
+ ++++ +++ L I N KAL + +N +A + P++ +I S
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161
Query: 588 LFHAQVSLKKSRGEEVYNMKFGG 610
LK++R ++ + FGG
Sbjct: 162 YELCVNKLKEARKKD--KLTFGG 182
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDI-DESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P +E L Y + DE+P A +R +PT ++KNG + +V
Sbjct: 34 CRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLV 90
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 598 SRGEEVYNMKFGG-----EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVET 652
S G E N+ F G E++ SL Q ++ + V+ F + C +I Y +
Sbjct: 8 SSGRE--NLYFQGQSIYIELKNTGSLNQVFSSTQNSSI-VIKFGAVWCKPCNKIKEYFKN 64
Query: 653 LCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
Y + + +D+D P + N++ +PTF+ Y N
Sbjct: 65 QLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFN 101
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 644 KQISPYVETLCG-RYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
K ++P +E + R + K+D+D +P A V +PT ++K+G +K IV
Sbjct: 43 KMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIV 98
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 612 VEEVSSLEQFRAAVSLPG---VSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKV 665
V E++ EQF + + V++F ++ CK + E + PS ++FL +
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNE-PSNSNVSFLSI 60
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697
D DE+ ++ + VP F I G+ +KE+
Sbjct: 61 DADENSEISELFEISAVPYFIIIHKGTILKEL 92
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDIDESPGVAHA 676
F A++ +V F + HCK ++P G+ + I KVD E +A
Sbjct: 17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ 76
Query: 677 ENVRIVPTFKIYKNG 691
VR PT K ++NG
Sbjct: 77 YGVRGYPTIKFFRNG 91
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPT-FK 686
PG+ +V F + C+++ + ++ + F+KVD+D++ A A V +P F
Sbjct: 23 PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFF 82
Query: 687 IYKNGSRMKEI 697
+ K G+ +K +
Sbjct: 83 VKKEGNEIKTL 93
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 484 RARGNDLFKSERFTEACQAYGE---GLRFDPSNS------------VLYCNRAACWFKLG 528
+ RG FK ++ +A Y + L ++ S S + N A C KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575
+ ++E N+AL + N K L RR ++ AV DFE+ R
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHL-------AVNDFELAR 250
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 567 AVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM----KFG---GEVEEVSSLE 619
+V+++E++ ++ D+N L+K R + + +M FG G V E+ S E
Sbjct: 73 SVQEYELIHKDKEDEN-----------CLRKYRRQCMQDMHQKLSFGPRYGFVYELESGE 121
Query: 620 QFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA 676
QF + VVH C ++ + L YP + F K+ + G
Sbjct: 122 QFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKAS-NTGAGDR 180
Query: 677 ENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706
+ ++PT +YK G + + + + E
Sbjct: 181 FSSDVLPTLLVYKGGELLSNFISVTEQLAE 210
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGV 673
V + +Q +A + GV + F + CK I+P +E L + +K+D+DE+
Sbjct: 4 VKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 674 AHAENVRIVPTFKIYKNG 691
A V +PT + K+G
Sbjct: 64 AGKYGVMSIPTLLVLKDG 81
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGR-YPSINFLK---VDIDESPGVAHAENVRIVPT 684
G++ + F + HCK ++P E L + +P + +K VD + +VR PT
Sbjct: 24 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT 83
Query: 685 FKIYKNGSRMKE 696
+++ G ++ E
Sbjct: 84 LLLFRGGKKVSE 95
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFL-KVDIDESPGVAHAENVRIVPTFKI 687
G+ +V F + HCK+++P E R I L KVD + + V PT KI
Sbjct: 22 GLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 688 YKNG 691
+++G
Sbjct: 82 FRDG 85
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGR-YPSINFLK---VDIDESPGVAHAENVRIVPT 684
G++ + F + HCK ++P E L + +P + +K VD + +VR PT
Sbjct: 22 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT 81
Query: 685 FKIYKNGSRMKE 696
+++ G ++ E
Sbjct: 82 LLLFRGGKKVSE 93
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENV 679
F+ A+ +V F +A C+ ++P +E + + K+++DE+P +
Sbjct: 10 FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 680 RIVPTFKIYKNGSRMKEIV 698
+PT ++K G +K+++
Sbjct: 70 MSIPTLILFKGGEPVKQLI 88
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
G+ +V F + CK I P + + + + KV+ID++P +A VR +PT +
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLML 80
Query: 688 YKNG 691
++G
Sbjct: 81 VRDG 84
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENV 679
F+ A+ +V F +A C+ ++P +E + + K+++DE+P +
Sbjct: 10 FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 680 RIVPTFKIYKNGSRMKEIV 698
+PT ++K G +K+++
Sbjct: 70 MSIPTLILFKGGRPVKQLI 88
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGR-YPSINFLK---VDIDESPGVAHAENVRIVPT 684
G++ + F + HCK ++P E L + +P + +K VD + +VR PT
Sbjct: 17 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT 76
Query: 685 FKIYKNGSRMKE 696
+++ G ++ E
Sbjct: 77 LLLFRGGKKVSE 88
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 642 HCKQISPYVE----TLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK-------N 690
HCKQ +P E TL P I K+D + +A +V PT KI K +
Sbjct: 48 HCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYD 107
Query: 691 GSRMK-EIVCPSRDM 704
GSR + EIV R++
Sbjct: 108 GSRTQEEIVAKVREV 122
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 484 RARGNDLFKSERFTEACQAYGE---GLRFDPSNS------------VLYCNRAACWFKLG 528
+ RG FK ++ +A Y + L ++ S S + N A C KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575
+ ++E N+AL + N K L RR ++ AV DFE+ R
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHL-------AVNDFELAR 250
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGR-YPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
VV F + CK + P +E + + + + KVDID+ +A V VPT KN
Sbjct: 35 VVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKN 94
Query: 691 GSRMKEIV-CPSRDMLE 706
G + + V D LE
Sbjct: 95 GDVVDKFVGIKDEDQLE 111
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
V+H +S C ++ ++ L ++P F+K ++ + H + +PT +YKNG
Sbjct: 34 VIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSC--IEHYHD-NCLPTIFVYKNG 90
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGV 673
V + +Q +A + GV + F + K I+P +E L + +K+D+DE+
Sbjct: 4 VKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 674 AHAENVRIVPTFKIYKNG 691
A V +PT + K+G
Sbjct: 64 AGKYGVMSIPTLLVLKDG 81
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGV 673
V + +Q +A + GV + F + K I+P +E L + +K+D+DE+
Sbjct: 4 VKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 674 AHAENVRIVPTFKIYKNG 691
A V +PT + K+G
Sbjct: 64 AGKYGVMSIPTLLVLKDG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,583,890
Number of Sequences: 62578
Number of extensions: 699304
Number of successful extensions: 1980
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 253
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)