Query 005108
Match_columns 714
No_of_seqs 1119 out of 4391
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.3E-39 2.8E-44 332.5 25.7 332 236-601 178-509 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 5.2E-37 1.1E-41 313.5 24.6 339 237-597 111-471 (966)
3 KOG0624 dsRNA-activated protei 100.0 7.3E-31 1.6E-35 251.5 32.7 356 237-607 33-400 (504)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-30 3.3E-35 295.8 41.2 316 242-584 127-503 (615)
5 PRK15174 Vi polysaccharide exp 100.0 1.7E-29 3.8E-34 286.1 42.1 315 232-581 66-385 (656)
6 TIGR00990 3a0801s09 mitochondr 100.0 9.6E-29 2.1E-33 281.0 41.8 337 230-600 149-560 (615)
7 KOG0547 Translocase of outer m 100.0 3E-29 6.6E-34 251.2 29.8 332 241-599 114-554 (606)
8 PRK11447 cellulose synthase su 100.0 1.3E-27 2.9E-32 288.8 41.4 321 231-582 292-705 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 3.3E-27 7.2E-32 267.5 39.8 315 241-589 41-359 (656)
10 PRK11447 cellulose synthase su 100.0 6.9E-27 1.5E-31 282.6 41.0 328 246-598 273-687 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-26 4.3E-31 276.0 43.8 338 237-597 460-819 (899)
12 KOG0548 Molecular co-chaperone 100.0 8.4E-27 1.8E-31 237.8 33.9 345 243-597 3-475 (539)
13 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-26 2.9E-31 277.4 41.1 324 238-597 563-886 (899)
14 KOG0550 Molecular chaperone (D 100.0 9.4E-28 2E-32 236.3 22.5 326 241-607 48-379 (486)
15 PRK10049 pgaA outer membrane p 100.0 3.5E-25 7.5E-30 256.4 41.2 351 227-588 68-467 (765)
16 KOG1126 DNA-binding cell divis 99.9 5.3E-26 1.1E-30 237.6 26.9 308 243-584 318-627 (638)
17 PRK11788 tetratricopeptide rep 99.9 1.6E-24 3.5E-29 233.8 33.6 283 242-588 35-322 (389)
18 PRK10049 pgaA outer membrane p 99.9 5.7E-24 1.2E-28 246.3 40.0 345 229-599 36-444 (765)
19 PRK11788 tetratricopeptide rep 99.9 4.7E-24 1E-28 230.1 36.7 285 228-576 55-346 (389)
20 PRK09782 bacteriophage N4 rece 99.9 1.3E-23 2.7E-28 243.2 38.1 330 225-592 359-721 (987)
21 KOG1155 Anaphase-promoting com 99.9 2.8E-23 6E-28 207.5 34.7 331 238-603 160-528 (559)
22 KOG1126 DNA-binding cell divis 99.9 1.2E-24 2.6E-29 227.5 25.7 287 278-598 319-607 (638)
23 KOG0547 Translocase of outer m 99.9 5.8E-24 1.3E-28 213.5 29.0 330 227-590 134-579 (606)
24 KOG2002 TPR-containing nuclear 99.9 1.5E-23 3.2E-28 226.7 31.9 347 237-597 265-731 (1018)
25 KOG2002 TPR-containing nuclear 99.9 3.5E-23 7.5E-28 223.8 34.4 353 235-601 157-583 (1018)
26 PRK09782 bacteriophage N4 rece 99.9 8.9E-23 1.9E-27 236.2 35.2 294 260-592 459-754 (987)
27 KOG1129 TPR repeat-containing 99.9 1.5E-22 3.3E-27 193.5 24.8 269 250-587 187-468 (478)
28 PLN03081 pentatricopeptide (PP 99.9 1.1E-21 2.5E-26 226.4 37.0 411 229-692 176-655 (697)
29 KOG1155 Anaphase-promoting com 99.9 1.1E-21 2.3E-26 196.3 28.4 303 273-608 161-492 (559)
30 KOG2076 RNA polymerase III tra 99.9 4E-21 8.7E-26 206.9 33.6 319 241-578 138-513 (895)
31 KOG1173 Anaphase-promoting com 99.9 2.4E-21 5.3E-26 198.6 29.2 288 240-595 242-536 (611)
32 PF13429 TPR_15: Tetratricopep 99.9 7.2E-23 1.6E-27 209.8 12.9 264 244-577 10-277 (280)
33 KOG1174 Anaphase-promoting com 99.9 4E-20 8.8E-25 182.2 30.8 316 246-596 202-519 (564)
34 PLN03077 Protein ECB2; Provisi 99.9 7.5E-20 1.6E-24 216.4 38.0 400 236-692 348-817 (857)
35 KOG2003 TPR repeat-containing 99.9 3.9E-21 8.4E-26 190.9 22.1 340 236-603 231-715 (840)
36 PRK14574 hmsH outer membrane p 99.9 4.6E-19 1E-23 201.5 39.8 328 241-586 101-522 (822)
37 KOG0624 dsRNA-activated protei 99.9 1.3E-19 2.7E-24 174.7 29.5 305 233-555 63-382 (504)
38 PRK14574 hmsH outer membrane p 99.9 4.1E-19 8.9E-24 201.9 38.3 157 435-601 328-503 (822)
39 TIGR00540 hemY_coli hemY prote 99.9 4.5E-19 9.8E-24 191.0 35.7 305 241-577 83-399 (409)
40 PRK12370 invasion protein regu 99.9 2E-19 4.3E-24 201.0 30.7 247 258-575 277-533 (553)
41 KOG0495 HAT repeat protein [RN 99.8 6.1E-18 1.3E-22 175.6 36.2 322 236-596 544-865 (913)
42 KOG1125 TPR repeat-containing 99.8 3.5E-20 7.6E-25 191.2 17.9 266 245-536 288-564 (579)
43 PRK10747 putative protoheme IX 99.8 1E-17 2.2E-22 179.6 37.7 300 241-578 83-391 (398)
44 KOG1129 TPR repeat-containing 99.8 1.7E-19 3.7E-24 172.8 20.2 245 244-557 225-472 (478)
45 KOG2076 RNA polymerase III tra 99.8 8.4E-18 1.8E-22 181.5 35.1 332 230-575 161-553 (895)
46 KOG0495 HAT repeat protein [RN 99.8 1.6E-17 3.5E-22 172.5 35.0 306 241-581 478-786 (913)
47 PRK12370 invasion protein regu 99.8 1.2E-18 2.5E-23 194.8 28.0 239 278-577 260-502 (553)
48 PLN03218 maturation of RBCL 1; 99.8 9.3E-17 2E-21 187.7 43.8 312 240-578 435-784 (1060)
49 PLN03218 maturation of RBCL 1; 99.8 9.2E-17 2E-21 187.8 43.6 315 239-581 403-754 (1060)
50 COG2956 Predicted N-acetylgluc 99.8 1E-17 2.2E-22 161.0 28.5 283 280-588 39-322 (389)
51 PRK11189 lipoprotein NlpI; Pro 99.8 3.9E-18 8.4E-23 175.1 26.3 122 256-419 40-165 (296)
52 PF13429 TPR_15: Tetratricopep 99.8 9.1E-20 2E-24 186.8 13.2 251 280-600 12-266 (280)
53 KOG1173 Anaphase-promoting com 99.8 5E-18 1.1E-22 174.5 25.2 256 236-557 272-532 (611)
54 PLN03081 pentatricopeptide (PP 99.8 3.7E-17 8.1E-22 189.0 35.9 296 240-577 257-557 (697)
55 TIGR00540 hemY_coli hemY prote 99.8 1.9E-17 4.2E-22 178.4 31.1 278 236-543 112-399 (409)
56 KOG0548 Molecular co-chaperone 99.8 2.1E-17 4.6E-22 169.5 29.2 257 314-588 228-496 (539)
57 KOG2003 TPR repeat-containing 99.8 2.7E-17 5.9E-22 163.7 28.6 296 244-574 421-719 (840)
58 KOG1125 TPR repeat-containing 99.8 1.6E-18 3.5E-23 179.0 20.2 257 280-597 289-557 (579)
59 PRK11189 lipoprotein NlpI; Pro 99.8 1.4E-17 3.1E-22 170.9 27.2 209 356-595 69-284 (296)
60 KOG0910 Thioredoxin-like prote 99.8 1.4E-19 3.1E-24 156.4 9.9 97 616-712 48-147 (150)
61 KOG0907 Thioredoxin [Posttrans 99.8 4.4E-19 9.6E-24 148.9 11.0 85 628-712 21-105 (106)
62 KOG1174 Anaphase-promoting com 99.8 3E-17 6.6E-22 162.1 25.4 285 236-555 226-512 (564)
63 PRK10747 putative protoheme IX 99.8 1.8E-16 3.9E-21 169.9 33.2 272 241-544 116-391 (398)
64 TIGR02521 type_IV_pilW type IV 99.8 3.8E-17 8.3E-22 162.2 25.4 205 240-510 29-233 (234)
65 KOG4162 Predicted calmodulin-b 99.8 5.2E-17 1.1E-21 172.7 27.0 313 236-583 472-789 (799)
66 TIGR02521 type_IV_pilW type IV 99.8 7.1E-17 1.5E-21 160.2 26.7 202 351-579 31-234 (234)
67 KOG0550 Molecular chaperone (D 99.8 1E-17 2.2E-22 165.8 19.9 278 234-546 75-353 (486)
68 COG3063 PilF Tfp pilus assembl 99.8 4.3E-17 9.4E-22 150.3 22.7 97 242-338 35-131 (250)
69 KOG4162 Predicted calmodulin-b 99.8 4.3E-16 9.4E-21 165.7 33.5 347 239-599 320-771 (799)
70 COG3063 PilF Tfp pilus assembl 99.8 9.9E-17 2.1E-21 147.9 23.4 206 352-585 36-244 (250)
71 PLN03077 Protein ECB2; Provisi 99.8 8.2E-16 1.8E-20 182.2 36.3 336 229-596 240-639 (857)
72 KOG1840 Kinesin light chain [C 99.8 1.4E-16 3.1E-21 169.6 24.4 258 236-542 193-478 (508)
73 COG2956 Predicted N-acetylgluc 99.7 6E-15 1.3E-19 142.1 31.2 276 246-557 39-324 (389)
74 KOG1840 Kinesin light chain [C 99.7 2.9E-16 6.3E-21 167.3 24.6 259 304-577 193-479 (508)
75 PLN02789 farnesyltranstransfer 99.7 5.5E-16 1.2E-20 158.6 25.2 240 240-579 35-304 (320)
76 cd02954 DIM1 Dim1 family; Dim1 99.7 2.1E-18 4.5E-23 145.6 5.6 87 619-705 3-93 (114)
77 PLN02789 farnesyltranstransfer 99.7 1.7E-15 3.7E-20 155.0 27.5 222 235-551 64-310 (320)
78 cd05804 StaR_like StaR_like; a 99.7 7.8E-15 1.7E-19 156.2 33.0 315 238-578 2-337 (355)
79 PHA02278 thioredoxin-like prot 99.7 2.7E-17 5.8E-22 138.4 9.3 92 617-708 3-100 (103)
80 cd02985 TRX_CDSP32 TRX family, 99.7 3.6E-17 7.7E-22 139.3 9.4 96 618-713 3-103 (103)
81 KOG1156 N-terminal acetyltrans 99.7 2.6E-14 5.6E-19 149.6 32.0 183 236-419 69-252 (700)
82 KOG1156 N-terminal acetyltrans 99.7 2.9E-14 6.3E-19 149.2 31.4 328 237-585 36-442 (700)
83 KOG0553 TPR repeat-containing 99.7 2.6E-16 5.7E-21 151.2 13.7 123 477-599 78-200 (304)
84 KOG1127 TPR repeat-containing 99.7 9.1E-15 2E-19 158.9 25.4 322 254-596 470-898 (1238)
85 cd02948 TRX_NDPK TRX domain, T 99.7 2.5E-16 5.4E-21 133.9 9.8 97 615-712 4-102 (102)
86 KOG0908 Thioredoxin-like prote 99.7 1.9E-16 4.1E-21 146.3 9.2 102 612-713 3-106 (288)
87 PLN00410 U5 snRNP protein, DIM 99.7 3.7E-16 8E-21 137.3 9.3 99 614-712 7-119 (142)
88 cd02965 HyaE HyaE family; HyaE 99.7 4E-16 8.7E-21 130.6 9.0 88 619-706 18-109 (111)
89 KOG2376 Signal recognition par 99.6 2E-12 4.3E-17 134.2 37.4 331 246-606 83-516 (652)
90 cd02989 Phd_like_TxnDC9 Phosdu 99.6 5.7E-16 1.2E-20 133.8 9.4 91 610-700 4-94 (113)
91 cd02987 Phd_like_Phd Phosducin 99.6 1.7E-15 3.6E-20 141.1 12.9 103 610-713 62-175 (175)
92 PF12569 NARP1: NMDA receptor- 99.6 2.9E-13 6.3E-18 146.4 32.0 315 241-578 3-335 (517)
93 PRK15359 type III secretion sy 99.6 5.1E-15 1.1E-19 134.4 15.6 129 454-597 13-141 (144)
94 cd03065 PDI_b_Calsequestrin_N 99.6 1.3E-15 2.8E-20 131.1 10.5 95 617-712 15-118 (120)
95 KOG1127 TPR repeat-containing 99.6 2.2E-14 4.8E-19 155.9 21.0 324 243-579 563-915 (1238)
96 COG3118 Thioredoxin domain-con 99.6 5.9E-16 1.3E-20 148.8 7.5 86 628-713 43-130 (304)
97 cd02957 Phd_like Phosducin (Ph 99.6 1.9E-15 4.1E-20 131.2 10.0 89 610-700 4-95 (113)
98 KOG2376 Signal recognition par 99.6 5.1E-12 1.1E-16 131.3 35.8 315 243-572 13-400 (652)
99 TIGR03302 OM_YfiO outer membra 99.6 6.3E-14 1.4E-18 139.7 19.8 177 384-580 31-235 (235)
100 cd02986 DLP Dim1 family, Dim1- 99.6 3.3E-15 7.1E-20 124.7 8.4 85 627-711 13-109 (114)
101 PRK15359 type III secretion sy 99.6 1.9E-14 4E-19 130.7 14.0 128 406-562 13-140 (144)
102 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.4E-16 123.6 34.3 297 242-577 84-390 (400)
103 PRK10370 formate-dependent nit 99.6 1.6E-13 3.5E-18 131.4 20.6 130 447-588 52-184 (198)
104 KOG1130 Predicted G-alpha GTPa 99.6 3.8E-14 8.2E-19 140.3 16.0 326 242-597 17-370 (639)
105 PF00085 Thioredoxin: Thioredo 99.6 6.5E-15 1.4E-19 126.1 9.4 96 617-712 5-103 (103)
106 cd03006 PDI_a_EFP1_N PDIa fami 99.6 6.1E-15 1.3E-19 126.3 8.5 91 618-708 16-112 (113)
107 KOG1915 Cell cycle control pro 99.6 1.9E-11 4.2E-16 123.4 34.5 353 241-599 72-488 (677)
108 KOG3785 Uncharacterized conser 99.6 4E-12 8.6E-17 123.9 28.3 327 252-596 32-442 (557)
109 PTZ00051 thioredoxin; Provisio 99.6 9E-15 1.9E-19 123.9 9.1 95 613-707 3-97 (98)
110 PRK14720 transcript cleavage f 99.6 4.6E-13 9.9E-18 150.7 25.3 143 390-576 120-282 (906)
111 cd02963 TRX_DnaJ TRX domain, D 99.6 1E-14 2.2E-19 126.0 9.1 86 627-712 23-111 (111)
112 cd02956 ybbN ybbN protein fami 99.6 9.6E-15 2.1E-19 123.1 8.5 83 628-710 12-96 (96)
113 TIGR03302 OM_YfiO outer membra 99.6 4.7E-13 1E-17 133.4 21.9 181 237-417 28-234 (235)
114 PRK10996 thioredoxin 2; Provis 99.6 1.5E-14 3.2E-19 130.1 9.6 96 617-712 41-138 (139)
115 cd02999 PDI_a_ERp44_like PDIa 99.6 7.5E-15 1.6E-19 123.9 7.2 82 627-709 17-100 (100)
116 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 9.7E-15 2.1E-19 124.3 7.4 91 618-708 8-100 (101)
117 TIGR02552 LcrH_SycD type III s 99.5 2.2E-13 4.7E-18 123.1 15.9 129 455-595 4-132 (135)
118 cd02984 TRX_PICOT TRX domain, 99.5 2.4E-14 5.3E-19 121.0 8.7 92 619-710 3-97 (97)
119 cd02988 Phd_like_VIAF Phosduci 99.5 1.1E-13 2.4E-18 130.5 13.5 101 610-713 82-192 (192)
120 PRK09381 trxA thioredoxin; Pro 99.5 5.8E-14 1.3E-18 121.4 10.6 99 613-712 6-107 (109)
121 cd05804 StaR_like StaR_like; a 99.5 1.2E-11 2.5E-16 131.8 29.8 278 240-544 41-337 (355)
122 PF04733 Coatomer_E: Coatomer 99.5 5.4E-13 1.2E-17 135.0 18.0 264 250-588 9-276 (290)
123 PRK15179 Vi polysaccharide bio 99.5 2.8E-12 6.1E-17 143.9 25.0 137 434-582 86-222 (694)
124 PTZ00062 glutaredoxin; Provisi 99.5 6.6E-14 1.4E-18 132.1 9.6 89 617-713 5-94 (204)
125 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 4.8E-14 1E-18 120.8 8.0 92 618-709 8-104 (104)
126 KOG3060 Uncharacterized conser 99.5 7.2E-12 1.6E-16 117.3 22.8 185 386-596 52-239 (289)
127 PRK04841 transcriptional regul 99.5 3.4E-11 7.3E-16 144.6 35.1 325 241-583 408-766 (903)
128 cd02950 TxlA TRX-like protein 99.5 5.9E-14 1.3E-18 126.5 8.5 93 620-712 12-109 (142)
129 PRK10370 formate-dependent nit 99.5 2.4E-12 5.1E-17 123.3 19.5 153 358-548 23-178 (198)
130 cd02962 TMX2 TMX2 family; comp 99.5 9.3E-14 2E-18 125.2 9.0 82 618-699 35-126 (152)
131 cd02975 PfPDO_like_N Pyrococcu 99.5 1E-13 2.2E-18 119.8 8.9 92 621-712 15-109 (113)
132 cd02996 PDI_a_ERp44 PDIa famil 99.5 9.8E-14 2.1E-18 119.6 7.9 92 618-709 8-108 (108)
133 PRK14720 transcript cleavage f 99.5 5.3E-12 1.2E-16 142.3 23.1 243 230-526 19-269 (906)
134 KOG3785 Uncharacterized conser 99.5 7.2E-12 1.6E-16 122.1 20.6 320 243-572 58-452 (557)
135 cd02949 TRX_NTR TRX domain, no 99.5 2E-13 4.3E-18 115.1 8.8 85 626-710 11-97 (97)
136 KOG0553 TPR repeat-containing 99.5 7.1E-13 1.5E-17 127.8 13.4 98 241-338 80-177 (304)
137 cd02994 PDI_a_TMX PDIa family, 99.5 2E-13 4.4E-18 116.2 8.8 91 618-711 8-101 (101)
138 cd03005 PDI_a_ERp46 PDIa famil 99.5 1.8E-13 4E-18 116.8 8.1 91 618-709 7-102 (102)
139 KOG1128 Uncharacterized conser 99.4 4.1E-12 8.9E-17 135.1 19.4 236 307-591 395-632 (777)
140 COG5010 TadD Flp pilus assembl 99.4 1E-11 2.2E-16 117.8 20.0 178 369-574 51-228 (257)
141 COG3071 HemY Uncharacterized e 99.4 1.7E-10 3.8E-15 115.2 29.6 275 237-543 113-390 (400)
142 PRK15363 pathogenicity island 99.4 3.5E-12 7.5E-17 113.2 15.5 111 486-596 41-151 (157)
143 KOG1128 Uncharacterized conser 99.4 4.2E-12 9.2E-17 135.0 17.7 223 238-543 394-616 (777)
144 cd02953 DsbDgamma DsbD gamma f 99.4 1.8E-13 3.8E-18 117.2 5.4 92 619-710 2-104 (104)
145 PRK15363 pathogenicity island 99.4 5.2E-12 1.1E-16 112.1 14.4 105 234-338 26-131 (157)
146 COG5010 TadD Flp pilus assembl 99.4 1.4E-11 3.1E-16 116.7 18.3 170 401-597 48-217 (257)
147 TIGR01295 PedC_BrcD bacterioci 99.4 9.8E-13 2.1E-17 114.9 9.6 93 617-710 12-121 (122)
148 PF12569 NARP1: NMDA receptor- 99.4 3.6E-10 7.8E-15 122.5 31.4 271 237-543 33-334 (517)
149 KOG1915 Cell cycle control pro 99.4 3.4E-09 7.4E-14 107.5 35.7 340 236-582 101-541 (677)
150 PRK15179 Vi polysaccharide bio 99.4 3.5E-11 7.5E-16 135.2 24.2 148 377-551 78-225 (694)
151 KOG3060 Uncharacterized conser 99.4 6.8E-11 1.5E-15 110.9 22.0 176 359-561 60-238 (289)
152 cd03000 PDI_a_TMX3 PDIa family 99.4 7.9E-13 1.7E-17 113.1 8.6 93 619-713 7-104 (104)
153 TIGR01068 thioredoxin thioredo 99.4 1.3E-12 2.7E-17 111.4 9.4 94 619-712 4-100 (101)
154 PLN03088 SGT1, suppressor of 99.4 6.7E-12 1.4E-16 131.9 16.5 116 483-598 5-120 (356)
155 KOG4340 Uncharacterized conser 99.4 7.7E-11 1.7E-15 112.5 21.7 295 251-571 19-333 (459)
156 TIGR01126 pdi_dom protein disu 99.4 1.2E-12 2.5E-17 111.9 8.6 94 619-712 4-101 (102)
157 cd02997 PDI_a_PDIR PDIa family 99.4 1.2E-12 2.6E-17 112.2 8.2 91 619-709 8-104 (104)
158 TIGR02552 LcrH_SycD type III s 99.4 1E-11 2.2E-16 112.1 14.6 119 407-551 4-122 (135)
159 PTZ00443 Thioredoxin domain-co 99.4 1.3E-12 2.9E-17 125.5 8.6 95 617-711 36-137 (224)
160 KOG1130 Predicted G-alpha GTPa 99.4 4.1E-12 8.8E-17 126.1 11.8 271 283-597 24-330 (639)
161 cd03002 PDI_a_MPD1_like PDI fa 99.4 1.6E-12 3.6E-17 112.4 7.6 92 619-710 8-109 (109)
162 cd02952 TRP14_like Human TRX-r 99.3 3E-12 6.5E-17 109.8 8.0 95 615-709 6-118 (119)
163 KOG0543 FKBP-type peptidyl-pro 99.3 1.6E-11 3.4E-16 123.6 14.3 123 479-601 207-344 (397)
164 cd03001 PDI_a_P5 PDIa family, 99.3 5.4E-12 1.2E-16 107.9 8.9 92 618-709 7-102 (103)
165 KOG4340 Uncharacterized conser 99.3 5.3E-10 1.2E-14 106.9 21.5 280 234-536 36-332 (459)
166 KOG4234 TPR repeat-containing 99.3 4.4E-11 9.5E-16 107.8 13.2 119 478-596 93-216 (271)
167 cd02947 TRX_family TRX family; 99.3 1.4E-11 2.9E-16 102.9 9.4 90 621-710 3-93 (93)
168 COG4783 Putative Zn-dependent 99.3 3.4E-10 7.3E-15 116.2 20.8 150 434-595 306-455 (484)
169 PF04733 Coatomer_E: Coatomer 99.3 1.1E-10 2.5E-15 118.1 17.1 233 241-549 34-271 (290)
170 cd02951 SoxW SoxW family; SoxW 99.3 1E-11 2.2E-16 110.2 7.5 94 619-712 4-118 (125)
171 cd02961 PDI_a_family Protein D 99.3 1.1E-11 2.4E-16 105.4 6.9 91 619-709 6-101 (101)
172 PRK04841 transcriptional regul 99.3 7.2E-09 1.6E-13 124.6 33.6 288 276-578 409-721 (903)
173 COG4783 Putative Zn-dependent 99.3 5.1E-10 1.1E-14 114.9 19.9 157 385-584 305-462 (484)
174 cd02998 PDI_a_ERp38 PDIa famil 99.2 1.7E-11 3.8E-16 105.1 7.4 91 619-709 8-105 (105)
175 PF14938 SNAP: Soluble NSF att 99.2 1.4E-09 3E-14 111.0 22.3 140 434-579 114-268 (282)
176 KOG2047 mRNA splicing factor [ 99.2 1.7E-07 3.7E-12 98.9 36.5 330 236-591 343-703 (835)
177 PLN03088 SGT1, suppressor of 99.2 2.2E-10 4.9E-15 120.4 15.7 114 437-562 5-118 (356)
178 KOG2047 mRNA splicing factor [ 99.2 6.1E-08 1.3E-12 102.1 32.0 317 242-577 248-615 (835)
179 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 4.7E-11 1E-15 102.3 7.8 90 619-709 8-104 (104)
180 TIGR00411 redox_disulf_1 small 99.2 7.8E-11 1.7E-15 95.9 8.5 78 631-712 2-81 (82)
181 PHA02125 thioredoxin-like prot 99.2 4.9E-11 1.1E-15 94.7 7.0 70 632-709 2-73 (75)
182 TIGR02795 tol_pal_ybgF tol-pal 99.2 7.7E-10 1.7E-14 97.2 13.8 105 484-588 6-116 (119)
183 KOG3081 Vesicle coat complex C 99.1 2.6E-08 5.7E-13 94.5 24.2 264 250-586 16-280 (299)
184 KOG4648 Uncharacterized conser 99.1 2.7E-10 5.9E-15 110.8 10.8 111 483-593 100-210 (536)
185 KOG1941 Acetylcholine receptor 99.1 9.1E-09 2E-13 101.2 21.3 322 242-577 6-360 (518)
186 cd02993 PDI_a_APS_reductase PD 99.1 1.3E-10 2.8E-15 100.1 7.8 91 619-709 9-109 (109)
187 TIGR02187 GlrX_arch Glutaredox 99.1 1.6E-10 3.4E-15 112.7 9.2 85 628-712 19-110 (215)
188 COG4235 Cytochrome c biogenesi 99.1 2.5E-09 5.5E-14 104.4 16.7 131 449-591 137-270 (287)
189 PF13414 TPR_11: TPR repeat; P 99.1 4.2E-10 9.2E-15 88.1 8.9 67 513-579 2-69 (69)
190 KOG4648 Uncharacterized conser 99.1 4.6E-11 9.9E-16 116.1 3.8 227 352-594 98-347 (536)
191 PRK10866 outer membrane biogen 99.1 1.7E-08 3.7E-13 99.9 22.1 173 240-412 30-238 (243)
192 KOG0190 Protein disulfide isom 99.1 1.3E-10 2.9E-15 121.9 7.4 98 615-712 29-131 (493)
193 PRK11509 hydrogenase-1 operon 99.1 7.3E-10 1.6E-14 95.9 10.1 92 621-712 27-123 (132)
194 PF13414 TPR_11: TPR repeat; P 99.1 4.5E-10 9.7E-15 88.0 8.2 68 240-307 1-69 (69)
195 cd02982 PDI_b'_family Protein 99.1 2E-10 4.4E-15 98.1 6.8 85 628-712 12-102 (103)
196 KOG1070 rRNA processing protei 99.1 2.3E-08 5E-13 113.5 24.5 239 289-558 1437-1680(1710)
197 KOG1672 ATP binding protein [P 99.1 1.7E-09 3.8E-14 96.9 12.2 92 609-700 65-156 (211)
198 PRK02603 photosystem I assembl 99.1 3.3E-09 7.1E-14 99.9 14.9 120 238-384 31-153 (172)
199 PRK15331 chaperone protein Sic 99.1 2.5E-09 5.3E-14 95.5 12.9 113 485-598 42-154 (165)
200 TIGR00412 redox_disulf_2 small 99.1 4.7E-10 1E-14 89.1 7.1 72 632-710 2-76 (76)
201 PRK02603 photosystem I assembl 99.1 6.5E-09 1.4E-13 97.9 16.1 119 434-581 35-153 (172)
202 cd00189 TPR Tetratricopeptide 99.0 2.6E-09 5.5E-14 88.9 11.9 97 484-580 4-100 (100)
203 KOG0543 FKBP-type peptidyl-pro 99.0 1E-08 2.2E-13 103.6 17.9 146 434-580 208-358 (397)
204 PRK10866 outer membrane biogen 99.0 2.7E-08 5.9E-13 98.4 20.3 171 384-574 30-238 (243)
205 TIGR02187 GlrX_arch Glutaredox 99.0 7.9E-10 1.7E-14 107.8 9.0 80 629-711 134-214 (215)
206 cd02992 PDI_a_QSOX PDIa family 99.0 2.8E-10 6.1E-15 98.6 4.9 75 618-692 8-89 (114)
207 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.6E-09 1.2E-13 91.6 13.3 107 434-552 2-114 (119)
208 TIGR00424 APS_reduc 5'-adenyly 99.0 7.8E-10 1.7E-14 117.3 9.1 96 617-712 357-462 (463)
209 TIGR02738 TrbB type-F conjugat 99.0 1.1E-09 2.3E-14 99.3 8.7 84 628-712 50-152 (153)
210 PRK10153 DNA-binding transcrip 99.0 1.3E-08 2.9E-13 111.3 18.6 144 433-583 338-488 (517)
211 PF13525 YfiO: Outer membrane 99.0 3.5E-08 7.5E-13 95.4 19.5 170 352-532 6-196 (203)
212 PF13525 YfiO: Outer membrane 99.0 2.2E-08 4.7E-13 96.8 17.7 166 382-567 1-197 (203)
213 PF12895 Apc3: Anaphase-promot 99.0 8.5E-10 1.8E-14 90.1 6.6 81 493-574 2-84 (84)
214 KOG1941 Acetylcholine receptor 99.0 2.9E-08 6.3E-13 97.7 18.0 289 278-578 8-321 (518)
215 CHL00033 ycf3 photosystem I as 99.0 1.5E-08 3.2E-13 95.1 15.7 125 448-582 13-154 (168)
216 cd03007 PDI_a_ERp29_N PDIa fam 99.0 7E-10 1.5E-14 94.3 6.0 92 617-712 7-115 (116)
217 CHL00033 ycf3 photosystem I as 99.0 2.1E-08 4.5E-13 94.0 16.6 111 241-385 34-154 (168)
218 COG3898 Uncharacterized membra 99.0 8E-07 1.7E-11 88.7 28.0 175 240-419 118-296 (531)
219 TIGR01130 ER_PDI_fam protein d 99.0 1.2E-09 2.5E-14 120.9 9.4 96 617-712 7-108 (462)
220 PF12895 Apc3: Anaphase-promot 99.0 1.4E-09 3.1E-14 88.7 7.5 82 254-336 1-84 (84)
221 KOG3617 WD40 and TPR repeat-co 99.0 2.9E-07 6.2E-12 99.3 26.2 294 243-574 801-1171(1416)
222 PTZ00102 disulphide isomerase; 99.0 1.4E-09 3.1E-14 120.5 9.2 95 617-712 38-137 (477)
223 cd02959 ERp19 Endoplasmic reti 99.0 6.3E-10 1.4E-14 96.6 5.0 81 620-700 11-96 (117)
224 TIGR02740 TraF-like TraF-like 99.0 2.7E-08 6E-13 99.6 17.0 84 628-712 166-263 (271)
225 cd00189 TPR Tetratricopeptide 99.0 8.5E-09 1.8E-13 85.7 11.5 99 436-546 2-100 (100)
226 PLN02309 5'-adenylylsulfate re 99.0 1.9E-09 4.2E-14 114.3 9.1 95 618-712 352-456 (457)
227 COG0457 NrfG FOG: TPR repeat [ 98.9 3.2E-06 7E-11 82.9 31.8 91 490-580 177-268 (291)
228 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 3.2E-09 6.9E-14 86.9 8.1 73 629-705 13-86 (89)
229 cd02973 TRX_GRX_like Thioredox 98.9 2.3E-09 5.1E-14 83.2 7.1 62 631-694 2-63 (67)
230 KOG1070 rRNA processing protei 98.9 3E-07 6.4E-12 104.7 26.2 237 258-527 1440-1683(1710)
231 KOG4277 Uncharacterized conser 98.9 1.4E-09 3E-14 103.5 6.7 99 614-712 29-131 (468)
232 PF13432 TPR_16: Tetratricopep 98.9 3.3E-09 7.1E-14 81.9 7.7 64 519-582 2-65 (65)
233 PRK14018 trifunctional thiored 98.9 2.3E-09 4.9E-14 115.3 8.8 85 627-711 55-171 (521)
234 PF09976 TPR_21: Tetratricopep 98.9 4E-08 8.7E-13 89.5 15.8 129 437-575 14-145 (145)
235 PRK10803 tol-pal system protei 98.9 2.5E-08 5.4E-13 99.3 15.4 104 487-590 149-259 (263)
236 PTZ00102 disulphide isomerase; 98.9 2.9E-09 6.2E-14 118.1 9.6 96 618-713 364-465 (477)
237 PRK00293 dipZ thiol:disulfide 98.9 1.6E-09 3.6E-14 120.3 7.5 100 614-713 456-570 (571)
238 PF14938 SNAP: Soluble NSF att 98.9 1.7E-08 3.7E-13 103.0 14.3 213 242-465 35-268 (282)
239 COG0457 NrfG FOG: TPR repeat [ 98.9 2.1E-06 4.6E-11 84.3 29.1 255 262-546 8-268 (291)
240 COG4235 Cytochrome c biogenesi 98.9 2E-08 4.3E-13 98.2 13.7 122 401-548 137-261 (287)
241 PRK15412 thiol:disulfide inter 98.9 4.6E-09 9.9E-14 99.8 8.9 84 627-712 67-175 (185)
242 PF13432 TPR_16: Tetratricopep 98.9 4.2E-09 9.1E-14 81.3 7.0 65 246-310 1-65 (65)
243 PF09976 TPR_21: Tetratricopep 98.9 1.1E-07 2.4E-12 86.6 17.4 94 242-335 11-110 (145)
244 PRK15331 chaperone protein Sic 98.9 2.1E-08 4.5E-13 89.7 11.5 105 237-341 32-136 (165)
245 PF02114 Phosducin: Phosducin; 98.9 3.2E-08 6.9E-13 97.9 13.6 103 610-713 125-238 (265)
246 KOG0912 Thiol-disulfide isomer 98.9 2.1E-09 4.5E-14 102.9 4.9 93 619-711 4-104 (375)
247 PRK10153 DNA-binding transcrip 98.9 5.3E-08 1.1E-12 106.6 16.2 131 392-549 345-488 (517)
248 TIGR00385 dsbE periplasmic pro 98.8 9.8E-09 2.1E-13 96.5 8.8 84 627-712 62-170 (173)
249 PRK11906 transcriptional regul 98.8 8.7E-08 1.9E-12 99.5 16.1 146 436-584 257-408 (458)
250 KOG4234 TPR repeat-containing 98.8 8.5E-08 1.8E-12 86.9 13.7 117 434-557 95-211 (271)
251 KOG2053 Mitochondrial inherita 98.8 4.1E-06 8.8E-11 92.2 29.2 291 251-573 18-333 (932)
252 PRK11906 transcriptional regul 98.8 1.6E-07 3.5E-12 97.5 17.8 149 402-576 274-435 (458)
253 cd02955 SSP411 TRX domain, SSP 98.8 5E-09 1.1E-13 91.2 5.6 82 619-700 6-100 (124)
254 KOG3617 WD40 and TPR repeat-co 98.8 3.2E-06 6.9E-11 91.5 27.1 294 252-575 738-1107(1416)
255 cd03010 TlpA_like_DsbE TlpA-li 98.8 1E-08 2.2E-13 91.2 6.9 77 628-705 25-126 (127)
256 PF13098 Thioredoxin_2: Thiore 98.8 4.9E-09 1.1E-13 91.0 4.7 83 627-709 4-112 (112)
257 COG4785 NlpI Lipoprotein NlpI, 98.8 2.3E-07 4.9E-12 85.3 15.5 192 352-578 66-267 (297)
258 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.5E-07 3.3E-12 98.4 16.1 124 437-575 172-295 (395)
259 cd03008 TryX_like_RdCVF Trypar 98.8 8.9E-09 1.9E-13 92.1 5.8 69 628-696 25-128 (146)
260 PRK13728 conjugal transfer pro 98.8 2.4E-08 5.1E-13 92.0 8.5 80 632-712 73-170 (181)
261 KOG2796 Uncharacterized conser 98.8 2E-05 4.3E-10 74.9 27.5 233 275-548 68-320 (366)
262 PF12688 TPR_5: Tetratrico pep 98.8 2E-07 4.4E-12 80.5 13.3 95 243-337 2-102 (120)
263 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.3E-07 2.9E-12 98.8 14.6 122 391-541 174-295 (395)
264 PF14559 TPR_19: Tetratricopep 98.7 3.6E-08 7.7E-13 76.8 7.7 68 252-319 1-68 (68)
265 COG4105 ComL DNA uptake lipopr 98.7 3.4E-06 7.3E-11 81.0 22.4 173 352-535 35-225 (254)
266 COG4785 NlpI Lipoprotein NlpI, 98.7 6.2E-07 1.3E-11 82.5 16.5 31 514-544 237-267 (297)
267 PRK10803 tol-pal system protei 98.7 2.4E-07 5.1E-12 92.4 15.2 106 434-551 142-254 (263)
268 COG3898 Uncharacterized membra 98.7 5E-05 1.1E-09 76.2 30.8 291 247-576 89-391 (531)
269 KOG3081 Vesicle coat complex C 98.7 5.7E-06 1.2E-10 79.0 22.6 231 240-548 39-276 (299)
270 KOG4555 TPR repeat-containing 98.7 5.6E-07 1.2E-11 75.8 13.6 97 485-581 48-148 (175)
271 KOG4642 Chaperone-dependent E3 98.7 1.2E-07 2.5E-12 88.5 10.1 112 481-592 11-127 (284)
272 COG4700 Uncharacterized protei 98.7 4.7E-06 1E-10 75.0 19.5 155 393-575 63-220 (251)
273 PF13512 TPR_18: Tetratricopep 98.7 6.9E-07 1.5E-11 78.3 13.9 103 485-587 15-138 (142)
274 PF14559 TPR_19: Tetratricopep 98.7 6.4E-08 1.4E-12 75.4 6.8 64 525-588 2-65 (68)
275 PF13371 TPR_9: Tetratricopept 98.7 1.5E-07 3.2E-12 74.5 8.9 67 521-587 2-68 (73)
276 COG1729 Uncharacterized protei 98.7 5.8E-07 1.3E-11 87.1 14.5 102 486-587 147-254 (262)
277 KOG2471 TPR repeat-containing 98.6 1E-05 2.3E-10 83.0 23.8 316 248-574 212-681 (696)
278 PF13905 Thioredoxin_8: Thiore 98.6 2.6E-08 5.7E-13 83.5 4.5 65 629-693 2-95 (95)
279 cd02964 TryX_like_family Trypa 98.6 4.1E-08 8.8E-13 87.9 5.9 70 628-697 17-116 (132)
280 PF12688 TPR_5: Tetratrico pep 98.6 6.2E-07 1.3E-11 77.5 12.9 98 436-542 3-103 (120)
281 KOG2053 Mitochondrial inherita 98.6 1.9E-05 4E-10 87.2 27.1 228 287-547 20-259 (932)
282 TIGR01130 ER_PDI_fam protein d 98.6 7E-08 1.5E-12 106.7 8.9 93 619-713 354-454 (462)
283 KOG0376 Serine-threonine phosp 98.6 6.4E-08 1.4E-12 99.8 7.6 117 483-599 7-123 (476)
284 PF13371 TPR_9: Tetratricopept 98.6 1.7E-07 3.8E-12 74.1 8.5 70 249-318 2-71 (73)
285 COG4105 ComL DNA uptake lipopr 98.6 3.3E-06 7.2E-11 81.1 18.5 180 383-582 31-238 (254)
286 PRK03147 thiol-disulfide oxido 98.6 1.2E-07 2.6E-12 89.4 8.7 86 628-713 61-172 (173)
287 cd03009 TryX_like_TryX_NRX Try 98.6 5.6E-08 1.2E-12 86.9 6.0 70 628-697 18-116 (131)
288 TIGR01626 ytfJ_HI0045 conserve 98.6 1.6E-07 3.4E-12 87.2 8.9 81 628-710 59-177 (184)
289 PF06552 TOM20_plant: Plant sp 98.6 5.8E-07 1.3E-11 81.1 11.7 97 496-592 7-124 (186)
290 PLN02919 haloacid dehalogenase 98.6 1.1E-07 2.3E-12 113.3 9.1 86 627-712 419-535 (1057)
291 KOG4555 TPR repeat-containing 98.6 2.2E-06 4.7E-11 72.3 13.8 101 243-343 44-148 (175)
292 KOG2471 TPR repeat-containing 98.6 2.9E-06 6.2E-11 87.0 17.3 295 243-561 18-382 (696)
293 cd02966 TlpA_like_family TlpA- 98.5 1.9E-07 4.1E-12 81.1 7.4 72 628-699 19-116 (116)
294 KOG1586 Protein required for f 98.5 2.3E-05 5E-10 73.2 20.8 195 320-550 24-231 (288)
295 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 3.2E-07 6.9E-12 81.0 8.4 80 628-708 20-121 (123)
296 KOG0190 Protein disulfide isom 98.5 1.2E-07 2.6E-12 100.0 6.5 94 618-713 373-473 (493)
297 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5.6E-07 1.2E-11 93.4 10.7 70 237-306 70-142 (453)
298 COG1729 Uncharacterized protei 98.5 2.2E-06 4.7E-11 83.2 13.4 100 241-340 140-245 (262)
299 KOG0545 Aryl-hydrocarbon recep 98.5 1.9E-06 4.1E-11 80.8 12.2 115 481-595 179-312 (329)
300 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 6.1E-07 1.3E-11 93.2 9.8 64 480-543 75-141 (453)
301 cd03012 TlpA_like_DipZ_like Tl 98.4 5.3E-07 1.1E-11 80.0 7.5 73 628-700 23-125 (126)
302 KOG2796 Uncharacterized conser 98.4 3E-05 6.4E-10 73.8 18.7 137 434-582 177-320 (366)
303 KOG3616 Selective LIM binding 98.4 4.9E-05 1.1E-09 81.6 22.1 285 278-581 663-1028(1636)
304 KOG0551 Hsp90 co-chaperone CNS 98.4 2E-06 4.4E-11 84.3 10.9 104 482-585 83-190 (390)
305 KOG4642 Chaperone-dependent E3 98.4 6.6E-07 1.4E-11 83.7 7.2 97 241-337 9-105 (284)
306 PF08534 Redoxin: Redoxin; In 98.4 7.2E-07 1.6E-11 81.4 7.4 74 627-700 27-134 (146)
307 KOG4507 Uncharacterized conser 98.4 3.2E-05 6.9E-10 81.1 19.9 106 487-592 614-720 (886)
308 cd02967 mauD Methylamine utili 98.4 8.1E-07 1.8E-11 77.2 7.2 69 628-696 21-111 (114)
309 TIGR02661 MauD methylamine deh 98.4 1.2E-06 2.5E-11 83.6 8.5 84 627-711 73-177 (189)
310 KOG0191 Thioredoxin/protein di 98.4 7.6E-07 1.7E-11 95.1 7.7 93 619-711 38-132 (383)
311 PF13512 TPR_18: Tetratricopep 98.4 9.9E-06 2.1E-10 71.1 13.0 108 434-550 10-135 (142)
312 cd02958 UAS UAS family; UAS is 98.3 1.3E-06 2.8E-11 75.8 7.4 91 622-712 11-110 (114)
313 PF13424 TPR_12: Tetratricopep 98.3 7.3E-07 1.6E-11 71.5 5.4 65 513-577 4-75 (78)
314 TIGR02196 GlrX_YruB Glutaredox 98.3 1E-06 2.2E-11 69.7 6.1 69 632-710 2-74 (74)
315 KOG1914 mRNA cleavage and poly 98.3 0.0019 4.1E-08 67.9 31.1 72 233-305 11-82 (656)
316 KOG1586 Protein required for f 98.3 2.5E-05 5.5E-10 73.0 15.5 204 363-596 26-245 (288)
317 COG4232 Thiol:disulfide interc 98.3 6.1E-07 1.3E-11 95.6 5.2 99 615-713 459-568 (569)
318 PLN02399 phospholipid hydroper 98.3 2E-06 4.3E-11 83.7 8.3 85 628-712 99-233 (236)
319 COG4700 Uncharacterized protei 98.3 8E-05 1.7E-09 67.2 17.5 148 366-542 71-221 (251)
320 PF04184 ST7: ST7 protein; In 98.3 4.5E-05 9.8E-10 79.4 17.5 57 247-305 173-229 (539)
321 KOG0914 Thioredoxin-like prote 98.3 1.1E-06 2.3E-11 80.4 5.0 86 615-700 129-224 (265)
322 KOG2300 Uncharacterized conser 98.3 0.0065 1.4E-07 63.1 32.4 331 242-578 46-475 (629)
323 KOG2300 Uncharacterized conser 98.2 0.0042 9.2E-08 64.5 30.7 325 242-583 88-520 (629)
324 PF06552 TOM20_plant: Plant sp 98.2 8.2E-06 1.8E-10 73.8 9.9 96 450-550 7-116 (186)
325 KOG2501 Thioredoxin, nucleored 98.2 1.6E-06 3.5E-11 76.6 5.3 68 628-695 33-130 (157)
326 PTZ00056 glutathione peroxidas 98.2 3.1E-06 6.8E-11 81.0 7.7 85 628-712 39-177 (199)
327 PF07079 DUF1347: Protein of u 98.2 0.011 2.3E-07 61.3 32.6 138 243-380 7-157 (549)
328 PF13424 TPR_12: Tetratricopep 98.2 1.9E-06 4E-11 69.1 4.8 65 241-305 4-75 (78)
329 PF14595 Thioredoxin_9: Thiore 98.2 1.6E-06 3.5E-11 76.2 4.6 84 628-712 41-128 (129)
330 PF05843 Suf: Suppressor of fo 98.2 5.7E-05 1.2E-09 76.8 16.3 141 435-587 2-146 (280)
331 PF04184 ST7: ST7 protein; In 98.2 0.00022 4.8E-09 74.4 20.2 171 288-474 180-386 (539)
332 KOG1585 Protein required for f 98.2 0.00032 7E-09 66.2 19.2 118 447-571 123-250 (308)
333 PF10300 DUF3808: Protein of u 98.1 0.0022 4.7E-08 70.2 28.4 165 394-577 196-376 (468)
334 KOG1308 Hsp70-interacting prot 98.1 4E-06 8.7E-11 82.8 5.9 107 485-592 119-225 (377)
335 PLN02412 probable glutathione 98.1 8.7E-06 1.9E-10 75.8 7.8 85 628-712 29-163 (167)
336 KOG0376 Serine-threonine phosp 98.1 6E-06 1.3E-10 85.5 6.7 104 242-345 4-109 (476)
337 KOG0551 Hsp90 co-chaperone CNS 98.1 4.1E-05 8.9E-10 75.4 11.9 98 241-338 80-181 (390)
338 PF10345 Cohesin_load: Cohesin 98.1 0.005 1.1E-07 70.1 30.5 319 241-565 58-466 (608)
339 KOG1550 Extracellular protein 98.0 0.0014 3E-08 73.4 25.3 284 257-580 227-541 (552)
340 PF13728 TraF: F plasmid trans 98.0 0.00019 4.1E-09 69.3 15.9 81 628-709 120-214 (215)
341 cd02960 AGR Anterior Gradient 98.0 8.1E-06 1.8E-10 71.0 5.7 79 620-700 15-99 (130)
342 TIGR02200 GlrX_actino Glutared 98.0 9.3E-06 2E-10 64.8 5.7 70 632-710 2-76 (77)
343 COG0526 TrxA Thiol-disulfide i 98.0 8.4E-06 1.8E-10 71.0 6.0 82 628-709 32-120 (127)
344 cd00340 GSH_Peroxidase Glutath 98.0 1.1E-05 2.4E-10 74.0 6.8 80 628-708 22-151 (152)
345 PF02259 FAT: FAT domain; Int 98.0 0.0013 2.8E-08 69.7 23.6 67 514-580 252-341 (352)
346 KOG1914 mRNA cleavage and poly 98.0 0.023 5.1E-07 60.1 30.8 348 220-581 12-505 (656)
347 KOG3616 Selective LIM binding 98.0 0.0039 8.5E-08 67.5 25.7 76 486-571 771-847 (1636)
348 smart00594 UAS UAS domain. 98.0 2.1E-05 4.6E-10 68.9 7.5 88 620-709 19-121 (122)
349 KOG2610 Uncharacterized conser 98.0 0.00016 3.5E-09 71.2 13.8 168 392-582 109-283 (491)
350 cd02969 PRX_like1 Peroxiredoxi 97.9 3.4E-05 7.3E-10 72.4 8.7 86 627-712 24-151 (171)
351 KOG1585 Protein required for f 97.9 0.00058 1.3E-08 64.6 16.3 187 388-592 33-238 (308)
352 PF13428 TPR_14: Tetratricopep 97.9 2.3E-05 5E-10 54.7 5.4 42 515-556 2-43 (44)
353 PF05843 Suf: Suppressor of fo 97.9 0.00026 5.7E-09 72.0 15.3 136 388-549 3-142 (280)
354 PF10345 Cohesin_load: Cohesin 97.9 0.0074 1.6E-07 68.8 28.5 302 258-572 37-428 (608)
355 KOG0545 Aryl-hydrocarbon recep 97.9 0.0002 4.3E-09 67.6 12.3 98 241-338 177-292 (329)
356 KOG0985 Vesicle coat protein c 97.9 0.0036 7.7E-08 70.3 23.6 273 248-569 1054-1375(1666)
357 KOG0911 Glutaredoxin-related p 97.9 5.3E-06 1.2E-10 77.2 1.8 85 627-711 16-100 (227)
358 PF13428 TPR_14: Tetratricopep 97.9 3.3E-05 7.1E-10 53.9 5.3 40 244-283 3-42 (44)
359 KOG0985 Vesicle coat protein c 97.9 0.0029 6.4E-08 70.9 22.7 210 308-572 1102-1336(1666)
360 PF02259 FAT: FAT domain; Int 97.9 0.011 2.5E-07 62.5 27.2 281 248-546 4-341 (352)
361 PF13281 DUF4071: Domain of un 97.8 0.008 1.7E-07 62.3 24.4 186 385-584 140-341 (374)
362 KOG1258 mRNA processing protei 97.8 0.072 1.6E-06 57.5 31.6 285 258-569 61-421 (577)
363 PF07079 DUF1347: Protein of u 97.8 0.04 8.7E-07 57.2 28.4 183 396-597 308-545 (549)
364 KOG1731 FAD-dependent sulfhydr 97.8 1.2E-05 2.5E-10 84.8 3.2 100 611-710 39-150 (606)
365 cd03014 PRX_Atyp2cys Peroxired 97.8 7.4E-05 1.6E-09 67.8 8.1 73 628-700 26-129 (143)
366 PF13431 TPR_17: Tetratricopep 97.8 2.5E-05 5.5E-10 50.8 3.4 32 265-296 2-33 (34)
367 KOG0191 Thioredoxin/protein di 97.8 4.1E-05 9E-10 81.8 7.1 89 624-712 158-251 (383)
368 KOG2610 Uncharacterized conser 97.8 0.0022 4.8E-08 63.4 18.1 167 279-507 106-274 (491)
369 TIGR02540 gpx7 putative glutat 97.8 8.3E-05 1.8E-09 68.3 7.8 85 628-712 22-152 (153)
370 cd03017 PRX_BCP Peroxiredoxin 97.8 8.8E-05 1.9E-09 67.0 7.9 82 628-709 23-139 (140)
371 cd01659 TRX_superfamily Thiore 97.7 6.6E-05 1.4E-09 57.1 5.9 60 632-691 1-63 (69)
372 PF13431 TPR_17: Tetratricopep 97.7 2.9E-05 6.3E-10 50.5 3.1 32 537-568 2-33 (34)
373 TIGR02739 TraF type-F conjugat 97.7 0.00065 1.4E-08 66.8 13.9 83 629-712 151-247 (256)
374 PTZ00256 glutathione peroxidas 97.7 7.8E-05 1.7E-09 70.6 7.3 83 630-712 43-180 (183)
375 KOG1550 Extracellular protein 97.7 0.005 1.1E-07 69.0 22.8 271 238-546 240-541 (552)
376 KOG1308 Hsp70-interacting prot 97.7 2.2E-05 4.7E-10 77.7 3.3 109 243-351 115-224 (377)
377 KOG1258 mRNA processing protei 97.7 0.12 2.5E-06 56.0 33.8 336 235-596 72-489 (577)
378 COG2143 Thioredoxin-related pr 97.7 0.00015 3.3E-09 63.1 7.7 93 619-711 33-147 (182)
379 COG2909 MalT ATP-dependent tra 97.7 0.048 1E-06 61.4 28.5 310 238-573 343-684 (894)
380 PF13192 Thioredoxin_3: Thiore 97.7 0.00011 2.3E-09 58.3 6.1 70 635-710 5-76 (76)
381 PF00515 TPR_1: Tetratricopept 97.7 8.6E-05 1.9E-09 48.4 4.6 32 515-546 2-33 (34)
382 PF03704 BTAD: Bacterial trans 97.6 0.0018 3.8E-08 59.0 14.6 92 486-577 12-125 (146)
383 PRK00522 tpx lipid hydroperoxi 97.6 0.00027 5.9E-09 65.8 9.3 82 628-709 44-165 (167)
384 COG3118 Thioredoxin domain-con 97.6 0.0033 7.3E-08 61.8 16.4 146 232-419 124-269 (304)
385 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00013 2.9E-09 57.2 5.5 68 632-709 2-73 (73)
386 PF13899 Thioredoxin_7: Thiore 97.6 3E-05 6.4E-10 62.7 1.7 68 621-689 10-81 (82)
387 cd03015 PRX_Typ2cys Peroxiredo 97.6 0.00034 7.5E-09 65.7 9.2 85 628-712 29-156 (173)
388 PF07719 TPR_2: Tetratricopept 97.6 0.00018 3.8E-09 46.9 5.1 31 516-546 3-33 (34)
389 KOG2041 WD40 repeat protein [G 97.6 0.012 2.7E-07 63.5 21.2 135 305-461 688-823 (1189)
390 PF10300 DUF3808: Protein of u 97.5 0.0033 7.1E-08 68.8 17.5 169 246-417 192-378 (468)
391 PF00515 TPR_1: Tetratricopept 97.5 0.00016 3.5E-09 47.1 4.5 32 243-274 2-33 (34)
392 PRK11200 grxA glutaredoxin 1; 97.5 0.00018 3.8E-09 58.6 5.6 74 631-711 2-81 (85)
393 PF07719 TPR_2: Tetratricopept 97.5 0.00024 5.2E-09 46.3 5.2 33 243-275 2-34 (34)
394 PF00578 AhpC-TSA: AhpC/TSA fa 97.5 0.00014 2.9E-09 64.2 5.3 69 627-695 24-123 (124)
395 PF13281 DUF4071: Domain of un 97.5 0.019 4.2E-07 59.5 21.5 194 276-474 141-345 (374)
396 COG2909 MalT ATP-dependent tra 97.5 0.13 2.8E-06 58.2 28.5 286 240-540 413-723 (894)
397 PF03704 BTAD: Bacterial trans 97.5 0.0022 4.8E-08 58.3 12.9 94 244-337 8-123 (146)
398 KOG0890 Protein kinase of the 97.5 0.079 1.7E-06 65.7 28.5 107 485-593 1675-1800(2382)
399 PRK09437 bcp thioredoxin-depen 97.4 0.00066 1.4E-08 62.4 8.9 80 628-707 30-147 (154)
400 PF11009 DUF2847: Protein of u 97.4 0.00021 4.6E-09 59.2 4.9 92 614-705 3-104 (105)
401 COG2976 Uncharacterized protei 97.4 0.014 3E-07 53.9 16.8 94 485-580 94-191 (207)
402 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00018 3.9E-09 58.4 4.3 60 632-694 1-65 (84)
403 KOG0530 Protein farnesyltransf 97.4 0.067 1.4E-06 51.6 21.6 166 372-558 99-269 (318)
404 KOG0913 Thiol-disulfide isomer 97.4 0.00011 2.4E-09 68.8 2.8 91 618-711 31-124 (248)
405 PRK13703 conjugal pilus assemb 97.4 0.015 3.2E-07 56.9 17.6 82 630-712 145-240 (248)
406 cd02970 PRX_like2 Peroxiredoxi 97.3 0.00052 1.1E-08 62.6 7.0 71 629-699 25-148 (149)
407 PF08631 SPO22: Meiosis protei 97.3 0.18 4E-06 51.2 26.2 54 252-305 3-65 (278)
408 KOG3414 Component of the U4/U6 97.3 0.0011 2.4E-08 55.4 7.9 95 616-710 9-117 (142)
409 KOG0530 Protein farnesyltransf 97.3 0.015 3.1E-07 56.0 16.4 174 361-560 53-233 (318)
410 TIGR03137 AhpC peroxiredoxin. 97.3 0.001 2.2E-08 63.2 8.8 84 628-711 31-154 (187)
411 cd03018 PRX_AhpE_like Peroxire 97.3 0.00073 1.6E-08 61.7 7.5 72 629-700 29-133 (149)
412 KOG3783 Uncharacterized conser 97.3 0.35 7.5E-06 51.8 28.0 307 248-596 196-539 (546)
413 KOG3783 Uncharacterized conser 97.3 0.062 1.3E-06 57.2 21.7 246 259-547 250-524 (546)
414 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.34 7.3E-06 50.5 32.1 72 232-303 32-103 (660)
415 PF06110 DUF953: Eukaryotic pr 97.2 0.00044 9.6E-09 59.2 4.9 83 628-710 19-118 (119)
416 KOG4507 Uncharacterized conser 97.2 0.0053 1.2E-07 65.1 13.4 105 444-559 617-721 (886)
417 PF03190 Thioredox_DsbH: Prote 97.2 0.00044 9.5E-09 62.5 4.7 80 619-700 28-122 (163)
418 PRK13190 putative peroxiredoxi 97.2 0.0019 4.1E-08 62.1 8.9 83 630-712 30-153 (202)
419 KOG1464 COP9 signalosome, subu 97.1 0.15 3.2E-06 49.4 21.0 231 254-528 39-286 (440)
420 KOG3170 Conserved phosducin-li 97.1 0.0017 3.7E-08 59.1 7.7 99 611-712 92-200 (240)
421 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0033 7.1E-08 45.3 7.4 49 549-597 2-50 (53)
422 COG2976 Uncharacterized protei 97.1 0.024 5.1E-07 52.4 14.5 101 313-419 92-192 (207)
423 KOG2041 WD40 repeat protein [G 97.1 0.18 3.8E-06 55.1 23.0 85 250-334 768-876 (1189)
424 cd02991 UAS_ETEA UAS family, E 97.1 0.0016 3.4E-08 56.2 6.6 89 622-712 11-112 (116)
425 COG0790 FOG: TPR repeat, SEL1 97.0 0.19 4.1E-06 51.6 22.9 184 362-581 52-270 (292)
426 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0014 3.1E-08 53.2 5.6 73 632-711 2-80 (86)
427 PF08631 SPO22: Meiosis protei 97.0 0.078 1.7E-06 53.9 19.5 99 242-340 35-151 (278)
428 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.7E-08 42.8 4.2 30 516-545 3-32 (34)
429 KOG1310 WD40 repeat protein [G 97.0 0.0028 6.1E-08 66.3 8.5 105 483-587 377-484 (758)
430 TIGR03143 AhpF_homolog putativ 97.0 0.0026 5.6E-08 71.6 9.2 75 631-709 479-554 (555)
431 cd02971 PRX_family Peroxiredox 97.0 0.0028 6E-08 57.1 7.7 75 627-701 21-130 (140)
432 PRK15000 peroxidase; Provision 96.9 0.0046 9.9E-08 59.3 9.3 85 628-712 34-161 (200)
433 PRK10877 protein disulfide iso 96.9 0.0017 3.8E-08 63.7 6.4 81 628-712 107-230 (232)
434 KOG3425 Uncharacterized conser 96.9 0.0029 6.3E-08 52.7 6.5 80 627-706 24-121 (128)
435 PF13181 TPR_8: Tetratricopept 96.9 0.0017 3.6E-08 42.2 4.2 32 549-580 2-33 (34)
436 cd02968 SCO SCO (an acronym fo 96.9 0.002 4.4E-08 58.2 6.3 41 628-668 22-68 (142)
437 PRK13599 putative peroxiredoxi 96.9 0.0044 9.5E-08 60.0 8.9 83 630-712 31-155 (215)
438 PRK10329 glutaredoxin-like pro 96.9 0.0033 7.1E-08 50.4 6.7 70 632-711 3-75 (81)
439 KOG3171 Conserved phosducin-li 96.9 0.0022 4.9E-08 58.9 6.2 102 611-713 139-251 (273)
440 PRK10382 alkyl hydroperoxide r 96.9 0.006 1.3E-07 57.6 9.3 84 629-712 32-155 (187)
441 PF08424 NRDE-2: NRDE-2, neces 96.9 0.069 1.5E-06 55.5 18.0 124 258-381 47-184 (321)
442 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0016 3.6E-08 50.9 4.4 66 633-707 2-70 (72)
443 KOG3824 Huntingtin interacting 96.8 0.013 2.9E-07 57.3 11.3 73 486-558 122-194 (472)
444 PF12968 DUF3856: Domain of Un 96.8 0.045 9.8E-07 45.9 12.5 92 486-577 15-129 (144)
445 PF04910 Tcf25: Transcriptiona 96.8 0.11 2.4E-06 54.6 18.9 104 434-548 103-227 (360)
446 PRK10941 hypothetical protein; 96.8 0.015 3.2E-07 58.1 11.5 76 515-590 182-257 (269)
447 KOG1463 26S proteasome regulat 96.7 0.15 3.2E-06 51.1 17.8 180 390-594 132-330 (411)
448 cd03023 DsbA_Com1_like DsbA fa 96.7 0.0052 1.1E-07 56.3 7.7 38 628-665 5-42 (154)
449 PRK13189 peroxiredoxin; Provis 96.7 0.0068 1.5E-07 59.1 8.8 83 630-712 38-162 (222)
450 KOG3364 Membrane protein invol 96.7 0.026 5.7E-07 48.6 11.0 85 513-597 31-120 (149)
451 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.18 3.8E-06 52.4 18.6 247 264-584 290-538 (660)
452 cd03016 PRX_1cys Peroxiredoxin 96.7 0.0067 1.4E-07 58.5 8.3 83 630-712 28-153 (203)
453 PF13174 TPR_6: Tetratricopept 96.7 0.0039 8.5E-08 40.0 4.7 31 550-580 2-32 (33)
454 COG0790 FOG: TPR repeat, SEL1 96.6 0.48 1E-05 48.6 22.3 189 286-546 51-269 (292)
455 PF00462 Glutaredoxin: Glutare 96.6 0.0034 7.4E-08 47.1 4.6 56 632-694 1-60 (60)
456 KOG1538 Uncharacterized conser 96.6 0.051 1.1E-06 58.5 14.3 52 487-541 780-831 (1081)
457 COG5159 RPN6 26S proteasome re 96.5 0.34 7.3E-06 47.4 18.4 298 246-594 7-328 (421)
458 PF08424 NRDE-2: NRDE-2, neces 96.5 0.091 2E-06 54.6 16.2 147 407-579 6-185 (321)
459 cd03020 DsbA_DsbC_DsbG DsbA fa 96.5 0.0025 5.5E-08 61.2 4.3 75 628-709 77-197 (197)
460 PF07449 HyaE: Hydrogenase-1 e 96.5 0.005 1.1E-07 51.5 5.3 80 620-700 18-101 (107)
461 PRK15180 Vi polysaccharide bio 96.5 1.4 3E-05 46.4 27.3 105 493-597 711-825 (831)
462 PRK10606 btuE putative glutath 96.5 0.007 1.5E-07 56.8 6.9 39 628-667 25-65 (183)
463 PRK15317 alkyl hydroperoxide r 96.5 0.01 2.3E-07 66.2 9.4 79 629-711 117-196 (517)
464 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.014 3E-07 42.1 6.7 44 515-558 2-45 (53)
465 PRK13191 putative peroxiredoxi 96.5 0.013 2.8E-07 56.8 8.8 83 630-712 36-160 (215)
466 PRK13184 pknD serine/threonine 96.5 1.9 4.1E-05 50.9 27.4 92 246-338 479-580 (932)
467 PF13174 TPR_6: Tetratricopept 96.4 0.0059 1.3E-07 39.1 4.4 33 515-547 1-33 (33)
468 COG3914 Spy Predicted O-linked 96.4 0.11 2.3E-06 56.0 15.8 142 448-599 45-193 (620)
469 KOG0128 RNA-binding protein SA 96.4 2.4 5.2E-05 47.9 31.9 147 234-381 105-261 (881)
470 KOG4814 Uncharacterized conser 96.4 1.4 3E-05 48.1 23.4 94 485-578 359-458 (872)
471 PF02966 DIM1: Mitosis protein 96.4 0.013 2.9E-07 50.1 7.0 90 620-710 10-114 (133)
472 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.0047 1E-07 49.7 4.2 58 632-694 2-64 (82)
473 TIGR02190 GlrX-dom Glutaredoxi 96.3 0.0058 1.3E-07 48.8 4.5 58 630-694 8-68 (79)
474 PTZ00137 2-Cys peroxiredoxin; 96.3 0.023 4.9E-07 56.4 9.4 84 629-712 99-224 (261)
475 PF14561 TPR_20: Tetratricopep 96.3 0.045 9.7E-07 44.7 9.6 73 261-333 7-81 (90)
476 PF13176 TPR_7: Tetratricopept 96.3 0.0078 1.7E-07 39.7 4.2 24 517-540 2-25 (36)
477 PF04910 Tcf25: Transcriptiona 96.3 0.092 2E-06 55.2 14.4 177 269-466 33-225 (360)
478 PRK10941 hypothetical protein; 96.3 0.033 7.2E-07 55.6 10.5 74 485-558 186-259 (269)
479 KOG0890 Protein kinase of the 96.3 2.3 4.9E-05 53.6 27.3 66 513-580 1669-1734(2382)
480 PF12968 DUF3856: Domain of Un 96.2 0.22 4.8E-06 42.0 13.2 92 246-337 13-127 (144)
481 PF09613 HrpB1_HrpK: Bacterial 96.2 0.34 7.4E-06 43.8 15.4 86 242-327 10-95 (160)
482 PF13176 TPR_7: Tetratricopept 96.2 0.0088 1.9E-07 39.4 4.1 29 550-578 1-29 (36)
483 COG4649 Uncharacterized protei 96.2 0.57 1.2E-05 42.5 16.3 141 439-590 63-208 (221)
484 KOG1538 Uncharacterized conser 96.1 0.28 6E-06 53.2 16.8 59 243-301 586-657 (1081)
485 KOG0546 HSP90 co-chaperone CPR 96.1 0.0069 1.5E-07 60.8 4.7 115 486-600 228-361 (372)
486 PRK11619 lytic murein transgly 96.1 3.7 8E-05 46.9 31.9 125 443-576 250-374 (644)
487 KOG3824 Huntingtin interacting 96.1 0.022 4.9E-07 55.8 7.7 78 242-319 116-193 (472)
488 cd02066 GRX_family Glutaredoxi 96.0 0.0086 1.9E-07 46.4 4.2 57 632-695 2-62 (72)
489 KOG2396 HAT (Half-A-TPR) repea 96.0 0.072 1.6E-06 56.1 11.7 95 498-592 89-184 (568)
490 KOG1464 COP9 signalosome, subu 96.0 0.13 2.8E-06 49.8 12.4 200 242-448 65-286 (440)
491 PF14561 TPR_20: Tetratricopep 96.0 0.049 1.1E-06 44.5 8.4 66 499-564 7-74 (90)
492 PF04781 DUF627: Protein of un 96.0 0.079 1.7E-06 44.4 9.5 91 487-577 3-107 (111)
493 TIGR03140 AhpF alkyl hydropero 95.9 0.029 6.3E-07 62.6 9.4 79 629-711 118-197 (515)
494 PF13462 Thioredoxin_4: Thiore 95.9 0.017 3.6E-07 53.5 6.2 79 628-711 12-162 (162)
495 KOG3807 Predicted membrane pro 95.9 0.96 2.1E-05 45.3 17.9 60 244-305 186-245 (556)
496 COG4649 Uncharacterized protei 95.9 0.91 2E-05 41.3 16.2 142 397-559 69-211 (221)
497 PF04781 DUF627: Protein of un 95.8 0.087 1.9E-06 44.1 9.3 91 248-338 2-106 (111)
498 cd02983 P5_C P5 family, C-term 95.8 0.04 8.7E-07 48.7 7.8 101 612-712 4-114 (130)
499 PF09613 HrpB1_HrpK: Bacterial 95.7 0.16 3.5E-06 45.8 11.3 105 485-591 15-119 (160)
500 KOG2114 Vacuolar assembly/sort 95.7 1.6 3.5E-05 49.2 20.9 250 281-583 339-596 (933)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=332.46 Aligned_cols=332 Identities=20% Similarity=0.180 Sum_probs=312.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
.++|....++..+|+.+-.+|+..+|..+|.+|++.+|..+.+|.++|.++..+|+...|++.|++|++++|++.++|++
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
||.+|...+.+++|+..|.+++...... ...+-+++.+|..+|+.+-|+..|+++++..|.+ +..+.++|.+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~-------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanA 329 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNH-------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANA 329 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcc-------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHH
Confidence 9999999999999999999998632222 2456677888999999999999999999999985 6778889999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+-..|+..+|+.+|++++.+.|.. +.+.+++|.+|.++|++++|..+|+++++..|....+...+
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~h--------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL- 394 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNH--------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL- 394 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCcc--------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH-
Confidence 999999999999999999999999 88999999999999999999999999999999999888766
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
|.+|.++|++++|+.+|+++|++.|..++++.++|..|..+|+...|+.+|++|+.++|...+++.+||
T Consensus 395 -----------a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 395 -----------ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred -----------HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.+|...|+..+|+..|+.++++.|+.+++..+|..+...+..|...
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999999999999999999999999999999999887653
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-37 Score=313.45 Aligned_cols=339 Identities=20% Similarity=0.193 Sum_probs=256.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|.-+++|-++|+.+...|++++|+.+|+.+++++|++.++|.++|.++...|+.+.|.++|..+++++|+...+...+
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 46667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.++..+|+..+|...|.++++... .....|.+++..+...|+...|+..|+++++++|.+. ..|.++|.+|
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ 262 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVY 262 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHH
Confidence 8888888888888888888876222 1123355556666677777777777777777777653 3444577777
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...+.+++|+.+|.+++.+.|++ +.++.++|.+|..+|..|-|+..|++++++.|+.++++..+.+
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~--------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNH--------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcc--------------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 77777777777777777777776 6666666666666677777777777776666666666665533
Q ss_pred H----------------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 477 V----------------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 477 l----------------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
. .-++...++|+++.++|++++|..+|+++++..|....++.+||.+|.++|++++|+
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 1 011223355888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+|+++++++|...+++.++|..|..+|+...|+.+|.+|+.++|...++..+|.-+++.-+.
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 888888888888888888888888888888888888888888888888888888777665543
No 3
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=7.3e-31 Score=251.55 Aligned_cols=356 Identities=19% Similarity=0.284 Sum_probs=323.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|.+++-++.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCCh-----HHHHHHHHHHH---HHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADP-----TEVHRLQVVEK---HLSKCTDARKVGDWKSALREGDAAIAAGADFSPQL 388 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~l~~~~~---~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 388 (714)
|.++.++|++++|...|.+.++.... .....+..+.. .......+...|++..|++....+++..|- ...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 99999999999999999999983321 12223333333 333445567789999999999999999885 5677
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..++.||...|+...|+..++.+-++..++ ...++.++.+++..|+.+.++...+++++++|++.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--------------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDN--------------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccc--------------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 8889999999999999999999999999988 77899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY----CNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
.++-.+..++.+.....-+......++|.++++..++.++.+|..+.+. ..+..|+..-|++.+|+..+.++++++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 9999999998888888888889999999999999999999999865443 447889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccccccccc
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMK 607 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~ 607 (714)
|++.+++..++.+|+....|++|+..|++|.+.++++..+.+.+.++++..++....+||++.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.5e-30 Score=295.75 Aligned_cols=316 Identities=21% Similarity=0.251 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+..+..+|+.++..|+|++|+.+|+++++..|+ +..|.++|.||..+|++++|+..|+++++++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcCCCChHHHH---HHHH--------------------------HHHH------------------
Q 005108 322 RLGQVENARRHLCLSGQQADPTEVH---RLQV--------------------------VEKH------------------ 354 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~~~~~~~~~---~l~~--------------------------~~~~------------------ 354 (714)
.+|++++|+..|..+.......... .+.. +..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887654321111000 0000 0000
Q ss_pred ---------HHHhHH---HHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCC
Q 005108 355 ---------LSKCTD---ARKVGDWKSALREGDAAIAAGA--DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420 (714)
Q Consensus 355 ---------~~~a~~---~~~~g~~~~Al~~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 420 (714)
+.++.. ....++|++|++.|++++..+. ......+..+|.++..+|++++|+..|+++++++|..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~- 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV- 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-
Confidence 001110 1123689999999999998752 2345667789999999999999999999999999998
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHH
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEAC 500 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~ 500 (714)
...|+.+|.++..+|++++|+..|+++++.+|++..+++.+ |.+++..|++++|+
T Consensus 365 -------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~ 419 (615)
T TIGR00990 365 -------------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR------------AQLHFIKGEFAQAG 419 (615)
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHH
Confidence 77899999999999999999999999999999999988866 99999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 501 QAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 501 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|+++++++|++...+.++|.++.++|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|+
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHH
Q 005108 581 DNEI 584 (714)
Q Consensus 581 ~~~~ 584 (714)
+...
T Consensus 500 ~~~~ 503 (615)
T TIGR00990 500 TKPM 503 (615)
T ss_pred cccc
Confidence 6443
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.7e-29 Score=286.09 Aligned_cols=315 Identities=13% Similarity=-0.015 Sum_probs=286.7
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
.......|+++++++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 66 ~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 66 SDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred HHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM 390 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 390 (714)
++..++.++...|++++|+..+.+++. .+++... +... ..+...|++++|+..++++++..|........
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--------~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--------IATC-LSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--------HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 999999999999999999999998765 2232221 1111 23678899999999999999987754455556
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH----HHHHHHHHhccCCC
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN----AVTAAEKAGQIDPR 466 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~ 466 (714)
.++.++...|++++|+..|+++++.+|++ ..+++.+|.++...|++++ |+..|+++++++|+
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~--------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDG--------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 67889999999999999999999999998 7889999999999999996 89999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+..++..+ |.++...|++++|+.+|+++++++|+++.++.++|.+|.+.|++++|+..|+++++.+|+
T Consensus 283 ~~~a~~~l------------g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 283 NVRIVTLY------------ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99988876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+...+..+|.++...|++++|+..|+++++.+|++
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 98888888999999999999999999999998875
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=9.6e-29 Score=280.98 Aligned_cols=337 Identities=15% Similarity=0.122 Sum_probs=273.4
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.....+.|+ +..+.++|.+|...|++++|+..|+++++++|++..+|+.+|.+|..+|++++|+..|..+..+++.+
T Consensus 149 ~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 149 LYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 33333446664 77899999999999999999999999999999999999999999999999999998886665443221
Q ss_pred H------------------------------HHH---------------------------------HHHHHHH---HHc
Q 005108 310 W------------------------------RAH---------------------------------QRLGSLL---VRL 323 (714)
Q Consensus 310 ~------------------------------~a~---------------------------------~~la~~~---~~~ 323 (714)
. ..+ ..++..+ ...
T Consensus 228 ~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~ 307 (615)
T TIGR00990 228 NEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKAD 307 (615)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhh
Confidence 1 011 1111111 113
Q ss_pred CCHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005108 324 GQVENARRHLCLSGQQA--DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ 401 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~--~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 401 (714)
++|++|+..|++++... .+. ....+..++.++...|++++|+..|+++++.+|.. ...+..+|.++..+|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEK------EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCC
Confidence 57899999999998743 222 23456777888899999999999999999999874 5566679999999999
Q ss_pred HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHH
Q 005108 402 LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481 (714)
Q Consensus 402 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 481 (714)
+++|+..|+++++.+|++ ..+++.+|.++...|++++|+.+|+++++++|++...+..+
T Consensus 381 ~~eA~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l------- 439 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSED--------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL------- 439 (615)
T ss_pred HHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH-------
Confidence 999999999999999988 77899999999999999999999999999999998887765
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH------HHHHH
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA------LLRRA 555 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la 555 (714)
|.++.+.|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|++... ++..+
T Consensus 440 -----a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 -----GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred -----HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998875332 23333
Q ss_pred HHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcc
Q 005108 556 ASN-SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 556 ~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~ 600 (714)
..+ ...|++++|+.+|+++++++|++..++..+.+++...++..+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 333 446899999999999999999998888888887777665443
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-29 Score=251.20 Aligned_cols=332 Identities=24% Similarity=0.331 Sum_probs=284.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
-+..+...|+.++.+|+|++||++|++||+++|+.+..|.+++.||..+|+|++.++.+.++++++|++..++++.+..+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhh------------------c------------C----CCChHH----------------------
Q 005108 321 VRLGQVENARRHLCLS------------------G------------Q----QADPTE---------------------- 344 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~a------------------l------------~----~~~~~~---------------------- 344 (714)
..+|++.+|+....-. + . +.-|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 9999999998754311 0 0 000000
Q ss_pred -------HHHHH---------------------------------------HHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Q 005108 345 -------VHRLQ---------------------------------------VVEKHLSKCTDARKVGDWKSALREGDAAI 378 (714)
Q Consensus 345 -------~~~l~---------------------------------------~~~~~~~~a~~~~~~g~~~~Al~~~~~al 378 (714)
...+. .++.++..+.-+.-.|+...|...|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00000 01222334444556788999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHH
Q 005108 379 AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458 (714)
Q Consensus 379 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 458 (714)
.++|.+. .+|..++.+|.+..+.++-...|.++..++|.+ +.+|+.+|++++-++++++|+..|+
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--------------~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--------------PDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--------------CchhHhHHHHHHHHHHHHHHHHHHH
Confidence 9999754 446679999999999999999999999999999 7789999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 459 ~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
+++.++|++.-.+..+ +.++++++++++++..|+++++..|+.++.|...|.++..+++|++|++.|+
T Consensus 419 Kai~L~pe~~~~~iQl------------~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQL------------CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHhhcChhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999888766 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC------CHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 539 QALLIQPN------YTKALLRRAASNS-KLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 539 ~al~~~p~------~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+++++.|. ++..+...|.+.. -.+++.+|+.++++|++++|....++..|.+...+..+.+
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 99999998 6666666665543 2489999999999999999999999999998877766543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-27 Score=288.79 Aligned_cols=321 Identities=15% Similarity=0.143 Sum_probs=266.7
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHCCCHHHHH
Q 005108 231 NRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA--------------FRSNRAAALTGLGRIGEAV 296 (714)
Q Consensus 231 ~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~ 296 (714)
+.....++|++++++..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 33344578999999999999999999999999999999999997642 2235588899999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHH------------------------
Q 005108 297 KECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQV------------------------ 350 (714)
Q Consensus 297 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~------------------------ 350 (714)
..|+++++++|++..++..+|.++..+|++++|+++|+++++ +.+......+..
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999987 222222221111
Q ss_pred ---------HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCC
Q 005108 351 ---------VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421 (714)
Q Consensus 351 ---------~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 421 (714)
...+..++..+...|++++|++.|+++++.+|+. ..++..++.+|...|++++|+..|+++++.+|.+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-- 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-- 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Confidence 1123346677888999999999999999999984 5677789999999999999999999999999988
Q ss_pred chhhhhhhhhhhHHHHHHH--------------------------------------------HHHHHHhCcHHHHHHHH
Q 005108 422 SSQTRFFGMLSEAYTFFVR--------------------------------------------AQIEMALGRFENAVTAA 457 (714)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l--------------------------------------------a~~~~~~g~~~~A~~~~ 457 (714)
...++.+ +..+...|++++|+.++
T Consensus 529 ------------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 529 ------------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444 44444555555555444
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
+ ..|.++..+.. +|.++.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.|
T Consensus 597 ~----~~p~~~~~~~~------------La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 597 R----QQPPSTRIDLT------------LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred H----hCCCCchHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 34555555443 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 538 NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+++++..|++..++..+|.++..+|++++|+++|++++...|+++
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999999999999999999999999877654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=3.3e-27 Score=267.51 Aligned_cols=315 Identities=12% Similarity=0.069 Sum_probs=280.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+..-+...+..++..|++++|+..++.++...|++..+++.++.+....|++++|+..|+++++.+|++..++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
...|++++|+..|++++...+.. ...+..++.++...|++++|+..+++++...|+... .+... ..+...|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~-------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g 191 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGN-------SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKS 191 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcC
Confidence 99999999999999998732221 134556677799999999999999999999997544 44434 3588999
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
++++|+..++++++.+|... ...+..++.++...|++++|+..|+++++.+|++..++..+
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~-------------~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L------ 252 (656)
T PRK15174 192 RLPEDHDLARALLPFFALER-------------QESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL------ 252 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcc-------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH------
Confidence 99999999999998876431 22345668889999999999999999999999999888766
Q ss_pred HHHHHHHhHHhhCcCHHH----HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTE----ACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.++...|++++ |+..|+++++++|++..++..+|.++...|++++|+..++++++++|++..++..+|.
T Consensus 253 ------g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 253 ------GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred ------HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+|.++|++++|+..|+++++.+|++......+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 999999999999999999999999876554433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.9e-27 Score=282.61 Aligned_cols=328 Identities=17% Similarity=0.123 Sum_probs=281.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH--------------
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR-------------- 311 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------- 311 (714)
..+|..++..|++++|+..|+++++.+|+++.++..+|.+|.++|++++|+.+|+++++++|++..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 356899999999999999999999999999999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS-- 389 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-- 389 (714)
....+|.++...|++++|+..|++++...+.. ...++.++.++...|++++|++.|+++++.+|++...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTD-------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22355888999999999999999999743322 134667788899999999999999999999997543221
Q ss_pred ---------------------------------------HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 390 ---------------------------------------MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 390 ---------------------------------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
..++.++...|++++|++.|+++++.+|++
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----------- 494 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS----------- 494 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------
Confidence 124556677899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH--------------------------------
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK-------------------------------- 478 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~-------------------------------- 478 (714)
..+++.+|.+|...|++++|+..|+++++.+|++++.++.+..+.
T Consensus 495 ---~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 495 ---VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 778999999999999999999999999999999988766442210
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.......++..+...|++++|+.+++ ..|.++.++..+|.++.+.|++++|++.|+++++.+|+++.+++.++.+|
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00112356778888999999998876 57899999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
...|++++|++.|+++++..|++..+...+..++...++.
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999888887776654443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2e-26 Score=275.97 Aligned_cols=338 Identities=21% Similarity=0.256 Sum_probs=286.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|+++..+..+|..+...|++++|+.+|+++++.+|++..+++.++.++...|++++|++.|+++++.+|.+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+.++...|++++|+..|++++...... ...++.++..+...|++++|+..+++++...|. ....+..++.++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 611 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQE-------IEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 999999999999999998887632221 123455667788888888888888888887776 456677788888
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+..|+++++.+|.+ ...+..++.++...|++++|+..|+++++.+|++...+..+..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDS--------------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88888888888888888888877 6677888888888888888888888888888887776665543
Q ss_pred HH----------------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 477 VK----------------------LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 477 l~----------------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
+. ....+..+|.++...|++++|+..|+++++..|++ ..+..++.++.+.|++++|+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHH
Confidence 21 11223456889999999999999999999999877 77888999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+.++++++.+|++..+++.+|.+|..+|++++|++.|+++++.+|+++.++..+..+....++
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999988888776655
No 12
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.4e-27 Score=237.79 Aligned_cols=345 Identities=23% Similarity=0.343 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..+...|+..+..|+|+.|+.+|.++|.++|.|...|.++..+|..+|+|++|++.-.+.++++|+++..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667888888999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChHHH--HHHH---------------------------------------------------
Q 005108 323 LGQVENARRHLCLSGQQADPTEV--HRLQ--------------------------------------------------- 349 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~--~~l~--------------------------------------------------- 349 (714)
+|+|++|+..|.+.++....... ..+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999888877752221111 0000
Q ss_pred ------------------------------------------------------------HHHHHHHHhHHHHHcCCHHH
Q 005108 350 ------------------------------------------------------------VVEKHLSKCTDARKVGDWKS 369 (714)
Q Consensus 350 ------------------------------------------------------------~~~~~~~~a~~~~~~g~~~~ 369 (714)
.......++....+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00111224556667778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR 449 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 449 (714)
|++.|.+++.++ .....+.+.+.+|+..|.+.+++....++++..-.. ...+.. .+.....+|..|...++
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-----rad~kl--Iak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-----RADYKL--IAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-----HHHHHH--HHHHHHHhhhhhhhHHh
Confidence 888888888887 345666778888888888888888777766544332 001111 23345557888999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhH---------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNV---------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l---------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 514 (714)
++.|+.+|++++...-. ++....+... ......+..|+.+++.|+|..|+..|.++|+.+|+++
T Consensus 314 ~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 99999999999865443 2222222221 2344456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
.+|.|+|.||.++|.+..|+.+++++++++|++..+|++.|.++..+.+|++|++.|+++++.+|++.++...+.++...
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhh
Q 005108 595 LKK 597 (714)
Q Consensus 595 l~~ 597 (714)
+..
T Consensus 473 ~~~ 475 (539)
T KOG0548|consen 473 QRG 475 (539)
T ss_pred hhc
Confidence 643
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.4e-26 Score=277.39 Aligned_cols=324 Identities=16% Similarity=0.116 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.|.+...++.++..+...|++++|+..++++++..|.+..+|..+|.++...|++++|+..|+++++.+|.+..++..++
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34444444444445555555555555555555444545555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.++...|++++|+..|++++...+.. ...+..++..+...|++++|+..++.+....|. ....+..++.++.
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 714 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDN-------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYL 714 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHH
Confidence 55555555555555555444311111 112333344455555555555555555555544 2333444566666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..|++++|+..|++++...|++ ..+..++.++...|++++|++.++++++.+|++..++..+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--- 776 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS---------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL--- 776 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc---------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 6666666666666666665553 2345566667777777777777777777777766665544
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|.++...|++++|+.+|+++++.+|+++.++.+++.++...|+ .+|+..+++++++.|+++..+..+|.+
T Consensus 777 ---------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 777 ---------AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred ---------HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 8888889999999999999999999888899999999999998 889999999999999988888899999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+..+|++++|+++|+++++.+|.+++++..+..++...++
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999999988888888877766554
No 14
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.4e-28 Score=236.29 Aligned_cols=326 Identities=32% Similarity=0.457 Sum_probs=293.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++....+|..+++..+|.+|+..|..|++.+|+++..|.+++.+++.+++|++|.-.+++.++++|.....+...+.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF--SPQLSMCRVEALLK 398 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~ 398 (714)
..+++..+|...|+..- ......|+..+++.+....+. ...+....+.|+.-
T Consensus 128 ~a~~~~i~A~~~~~~~~--------------------------~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~ 181 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ--------------------------AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF 181 (486)
T ss_pred hhhHHHHHHHHHhhhhh--------------------------hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence 99999999988775210 001223444444444443221 13444558999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
++++++|...--..+++++.+ .++++..|.+++...+.+.|+..|++++.++|++...-.....++
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n--------------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN--------------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred cccchhHHHHHHHHHhcccch--------------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 999999999999999999999 889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR 554 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (714)
....++..|+-.++.|+|.+|.++|.++|.++|++ +.+|.++|.+..++|+.++|+..++.++++++...+++...
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999986 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccccccccc
Q 005108 555 AASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMK 607 (714)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~ 607 (714)
|.|+..+++|++|+++|+++++...+ .++...|.+++..|++.+++++|++.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykil 379 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKIL 379 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHh
Confidence 99999999999999999999999977 99999999999999999999999876
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=3.5e-25 Score=256.37 Aligned_cols=351 Identities=14% Similarity=0.056 Sum_probs=270.1
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD 306 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (714)
....+.....+.|+++..+..++.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+..|+++++++
T Consensus 68 A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344455545578888888888888888889999999999999888888888 8888888888999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCCh------------------------HH----HHHHHHHHHHH---
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP------------------------TE----VHRLQVVEKHL--- 355 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~----~~~l~~~~~~~--- 355 (714)
|++..++..++.++...++.++|+..++++...++. .. ...+..++...
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 988888888888888888888888877765541110 00 00011111111
Q ss_pred ---------------HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCC
Q 005108 356 ---------------SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420 (714)
Q Consensus 356 ---------------~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 420 (714)
.....+...+++++|+..|+++++.++.........++.+|..+|++++|+..|+++++.+|.+.
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11123457789999999999999886543333344468899999999999999999988776641
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH---HHHHHHHHHHhHHhhCcCHH
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV---KLVARARARGNDLFKSERFT 497 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l---~~~~~~~~~g~~~~~~g~~~ 497 (714)
. ........++.++...|++++|+..++++....|.....+...... ........++.++...|+++
T Consensus 307 ~----------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 307 D----------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred C----------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 0 0023456667788999999999999999998877432111000000 00001113488999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|++.|++++...|.+..++..+|.++...|++++|++.++++++++|++..+++.+|.++..+|++++|...++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHH
Q 005108 578 LPDDNEIAESL 588 (714)
Q Consensus 578 ~p~~~~~~~~L 588 (714)
+|+++.+...-
T Consensus 457 ~Pd~~~~~~~~ 467 (765)
T PRK10049 457 EPQDPGVQRLA 467 (765)
T ss_pred CCCCHHHHHHH
Confidence 99999776543
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.3e-26 Score=237.59 Aligned_cols=308 Identities=18% Similarity=0.173 Sum_probs=247.7
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 243 EELKRMGNELY--RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 243 ~~~~~~g~~~~--~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+.+..+|..|. .+-+.++|+..|.+.-...++..+++..+|.+|+++++|++|..+|+.+-+++|-..+....+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44445555554 4456789999999977778888899999999999999999999999999999998888777777777
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
+.+.+. -++.++.+-+-..++.. -+.|...|.+|.-+++++.|++.|+++++++|.+. ..|..+|.-+....
T Consensus 398 WHLq~~-v~Ls~Laq~Li~~~~~s------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-YayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDE-VALSYLAQDLIDTDPNS------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-YAYTLLGHESIATE 469 (638)
T ss_pred HHHHhh-HHHHHHHHHHHhhCCCC------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-hhhhhcCChhhhhH
Confidence 776543 34444444332222221 13466677778888888888888888888888753 44555788888888
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
++|.|..+|++++..+|.+ ..+||.+|.+|.++++++.|.-.|++|++++|.+......+
T Consensus 470 e~d~a~~~fr~Al~~~~rh--------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~------ 529 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH--------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI------ 529 (638)
T ss_pred HHHhHHHHHHhhhcCCchh--------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh------
Confidence 8888888888888888888 77888888888888888888888888888888888777765
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.++++++|+..+++.-++-|++..+++.+|.+|.+
T Consensus 530 ------g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 530 ------GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred ------hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHH
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|+.+.|+..|--|.+++|.-..+
T Consensus 604 ~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 604 LGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HccchHHHHhhHHHhcCCCccchh
Confidence 888888888888888888876553
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.6e-24 Score=233.76 Aligned_cols=283 Identities=17% Similarity=0.144 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLG 317 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la 317 (714)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34555567777777777777777777777777777777777777777777777777777776643221 24556666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...|++++|+..|++++ +..|. ....+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l-----------------------------------------~~~~~-~~~~~~~la~~~~ 152 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLV-----------------------------------------DEGDF-AEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHH-----------------------------------------cCCcc-hHHHHHHHHHHHH
Confidence 66666666666666665554 33332 2334445666666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..|++++|++.++++++..|.+.. ......+..+|.++...|++++|+.+|+++++.+|++...+..+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--- 220 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLR---------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL--- 220 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcch---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH---
Confidence 677777777777766666554310 00123455666777777777777777777777777666665544
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.++.+.|++++|+++|+++++.+|.+ ..++..++.+|.+.|++++|+..++++++..|+.. .+..++.
T Consensus 221 ---------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~ 290 (389)
T PRK11788 221 ---------GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQ 290 (389)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHH
Confidence 667777777777777777777766654 34566677777777777777777777777777654 3366777
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++.+.|++++|+..|+++++.+|++..+...+
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 77777777777777777777777666544333
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=5.7e-24 Score=246.28 Aligned_cols=345 Identities=14% Similarity=0.048 Sum_probs=274.0
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN 308 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (714)
.++.....+.|..+..+..+|..+...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++++++.+|+
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~ 115 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD 115 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44555545688889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHH-----------------------------HHHH
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEK-----------------------------HLSK 357 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~-----------------------------~~~~ 357 (714)
+.. +..+|.++...|++++|+..|++++. +.++.....+..+.. ....
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAEL 194 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999998 222222222111100 0000
Q ss_pred hHHHH-----HcCCH---HHHHHHHHHHHHc---CCCCCHHH---HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 358 CTDAR-----KVGDW---KSALREGDAAIAA---GADFSPQL---SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 358 a~~~~-----~~g~~---~~Al~~~~~al~~---~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
...+. ..+++ ++|++.++++++. +|+....+ ......++...|++++|+..|+++++..+..+
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P--- 271 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP--- 271 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC---
Confidence 00010 11223 6788888888865 33322221 11112345677999999999999998865421
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH----HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV----EVAVLLNNVKLVARARARGNDLFKSERFTEA 499 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A 499 (714)
.++...++.+|..+|++++|+.+|+++++.+|.+. ..... ++.++...|++++|
T Consensus 272 ----------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~------------L~~a~~~~g~~~eA 329 (765)
T PRK10049 272 ----------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD------------LFYSLLESENYPGA 329 (765)
T ss_pred ----------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH------------HHHHHHhcccHHHH
Confidence 23444469999999999999999999998887662 22322 36778999999999
Q ss_pred HHHHHHhhccCCC-------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 500 CQAYGEGLRFDPS-------------N--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 500 ~~~~~~al~~~p~-------------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
+.+++++.+..|. + ..++..++.++...|++++|++.+++++...|++..+++.+|.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999999988763 2 457788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
++|++.++++++++|++..+...+..+...+++..
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998887777666655543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=4.7e-24 Score=230.14 Aligned_cols=285 Identities=13% Similarity=0.001 Sum_probs=234.0
Q ss_pred cchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 005108 228 ANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAV 303 (714)
Q Consensus 228 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (714)
...+......+|+++..+..+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|++++
T Consensus 55 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 55 IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444456789999999999999999999999999999999854332 3578899999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+.+|.+..++..++.++...|++++|++.|++++.........
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------------------- 177 (389)
T PRK11788 135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------------------- 177 (389)
T ss_pred cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------------------
Confidence 9999999999999999999999999999887765311110000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
....++..++.++...|++++|+.+|+++++.+|.+ ..+++.+|.++...|++++|++.|++++..
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQC--------------VRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 012234568889999999999999999999998887 678889999999999999999999999998
Q ss_pred CCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 464 DPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 464 ~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+|.+. ..+.. ++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++
T Consensus 244 ~p~~~~~~~~~------------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 244 DPEYLSEVLPK------------LMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred ChhhHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88763 23333 388899999999999999999999997754 48899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q 005108 543 IQPNYTKALLRRAASNSK--LEKWADAVRDFEVLRR 576 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~ 576 (714)
..|++......++..+.. .|+.++|+..+++.++
T Consensus 311 ~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 311 RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999987555444433322 4588899988887764
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-23 Score=243.22 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=275.1
Q ss_pred ccccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC----------
Q 005108 225 PENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGR---------- 291 (714)
Q Consensus 225 p~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~---------- 291 (714)
++....+..+-...|.+.+.+...+....+.|++++|...|+++....++- ......++.+|...+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 344445555555678999999999999999999999999999999863322 2344477777776644
Q ss_pred ---------------H---HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 292 ---------------I---GEAVKECEEAVRLDPN--YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 292 ---------------~---~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
+ ..+...+.+++..+|. +..+|+.+|.++.. +++++|+..|.+++..... ..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~~------ 510 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-AW------ 510 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-hH------
Confidence 2 2344555666667788 99999999999987 8999999999888863322 11
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
.++..+..+...|++++|+..|++++...|. .. .+..+|.++.+.|++++|+.+|+++++.+|..
T Consensus 511 -~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~-a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------------ 575 (987)
T PRK09782 511 -QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NE-DLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------------ 575 (987)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------------
Confidence 2555666678999999999999998777555 33 35568999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+..++..+...|++++|+..|+++++++|+ ...+..+ |.++.+.|++++|+.+|+++++++|
T Consensus 576 --~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~L------------A~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 576 --NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVAR------------ATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 455556666667779999999999999999996 7777655 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..+.....++
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877655544
Q ss_pred H
Q 005108 592 Q 592 (714)
Q Consensus 592 ~ 592 (714)
.
T Consensus 721 ~ 721 (987)
T PRK09782 721 N 721 (987)
T ss_pred H
Confidence 3
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-23 Score=207.52 Aligned_cols=331 Identities=16% Similarity=0.129 Sum_probs=212.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------------------HHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-----------------------------LTG 288 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~ 288 (714)
...|+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+ +..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999888887777655544 444
Q ss_pred CCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCH
Q 005108 289 LGRIGEAVKECEEAVRL-DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 289 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~ 367 (714)
+.+.++++.-++..+.. -|.+...-...|.+.+.+.++++|+..|+...+. +|-....+...... ++-..+
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~------LYv~~~- 311 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNV------LYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHH------HHHHhh-
Confidence 55678888888888777 6888888888999999999999999999999875 44333322221111 111111
Q ss_pred HHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 368 KSALREG-DAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 368 ~~Al~~~-~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
...+.++ +.+..++ .+.++....+|+.|...++.++|+.+|+++++++|.. ..+|..+|.-|..
T Consensus 312 ~skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~--------------~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY--------------LSAWTLMGHEYVE 376 (559)
T ss_pred hHHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch--------------hHHHHHhhHHHHH
Confidence 1111111 1122222 2233344446666666666666666666666666665 5566666666666
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
+++...|++.|++|++++|.+..+|+.+ |+.|.-++...=|+-+|++|++..|+|...|..||.||.+
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGL------------GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGL------------GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhh------------hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 6666666666666666666666666655 6666666666666666666666666666666666666666
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhhhc
Q 005108 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR-------ELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+++.++|+++|.+++.....+..+++.+|.+|.++++.++|..+|++.++ ..|+-..+...|..-....++.+
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 66666666666666666555556666666666666666666666666665 22323333444444444444444
Q ss_pred cccc
Q 005108 600 GEEV 603 (714)
Q Consensus 600 ~~~~ 603 (714)
+..+
T Consensus 525 ~As~ 528 (559)
T KOG1155|consen 525 EASY 528 (559)
T ss_pred HHHH
Confidence 4444
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-24 Score=227.47 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGL--GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHL 355 (714)
Q Consensus 278 ~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~ 355 (714)
.+..+|..|... -+.++|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+. +|.....++....
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~-~p~rv~~meiyST-- 395 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI-EPYRVKGMEIYST-- 395 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchhHHHH--
Confidence 344555555444 45689999999977777888899999999999999999999999887642 1111111111110
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
.+..+.+--+--...+..+..+|. .++.|..+|+||.-+++++.|+++|+++++++|.. ++
T Consensus 396 ----~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f--------------aY 456 (638)
T KOG1126|consen 396 ----TLWHLQDEVALSYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF--------------AY 456 (638)
T ss_pred ----HHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc--------------ch
Confidence 011112211112233556667776 67788889999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+|..+|.-+.....+|+|..+|++|+..+|.+..+|+.+ |.+|.++++++.|.-+|++|++++|.+..
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl------------G~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL------------GTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh------------hhheeccchhhHHHHHHHhhhcCCccchh
Confidence 999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
+.+.+|.++.++|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..++++.++-|++..+...+.+++..+
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhh
Q 005108 596 KKS 598 (714)
Q Consensus 596 ~~~ 598 (714)
++.
T Consensus 605 ~~~ 607 (638)
T KOG1126|consen 605 GNT 607 (638)
T ss_pred ccc
Confidence 764
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.8e-24 Score=213.50 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=270.3
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH------
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE------ 300 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------ 300 (714)
.+.-|.....++|+.+..|-+++-+|...|+|++.++.+.++++++|+...+++.++.++..+|++++|+....
T Consensus 134 AIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~ 213 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILE 213 (606)
T ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhh
Confidence 33444444568999899999999999999999999999999999999999999999999999999998865331
Q ss_pred ------------HHHhc------------C--C-----------------------------------------------
Q 005108 301 ------------EAVRL------------D--P----------------------------------------------- 307 (714)
Q Consensus 301 ------------~al~~------------~--p----------------------------------------------- 307 (714)
+.++. + |
T Consensus 214 ~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e 293 (606)
T KOG0547|consen 214 GFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEE 293 (606)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCch
Confidence 11100 0 0
Q ss_pred ---------------------Cc---------HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 005108 308 ---------------------NY---------WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357 (714)
Q Consensus 308 ---------------------~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~ 357 (714)
.+ ..++...|..++-.|++..|...|++++....... ..++.+
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~ 366 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-------SLYIKR 366 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-------hHHHHH
Confidence 00 22333344444455555556555555554221111 226778
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
+..|....+-++-...|+++..++|.+. .+|+.+|.+++-++++++|+..|++++.++|.+ ++.+
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--------------~~~~ 431 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLDPENP-DVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--------------AYAY 431 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcCCCCC-chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--------------hHHH
Confidence 8889999999999999999999999865 455569999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-----
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS----- 512 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----- 512 (714)
..++.++++++++++++..|+.+++..|+.++++... |.++..+++|++|++.|++++++.|.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~f------------AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLF------------AEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH------------HHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999999888 99999999999999999999999998
Q ss_pred -CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 513 -NSVLYCNRAACWF-KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 513 -~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
++..+.+.|.+.. -.+++.+|+.++++|++++|....++..||.+..++|+.++|+++|+++..+.....+.......
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555554433 25899999999999999999999999999999999999999999999999887666665544433
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-23 Score=226.72 Aligned_cols=347 Identities=19% Similarity=0.180 Sum_probs=204.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-WRA 312 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a 312 (714)
.++.+|.++..++..++..|+|..+..+..-++...-.. .+.++.+|.+|..+|+|++|..+|.++++.++++ .-.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 455566666666666666666666666666665543222 3446666666666666666666666666666555 555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHH-----------------------------HHHHH------
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQV-----------------------------VEKHL------ 355 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~-----------------------------~~~~~------ 355 (714)
++.+|.+|+..|+++.|+.+|++.+. +........+.. .+.|+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 56666666666666666666665544 111111111111 11222
Q ss_pred --------------------------------HHhHHHHHcCCHHHHHHHHHHHHHc-----CCCC----CHHHHHHHHH
Q 005108 356 --------------------------------SKCTDARKVGDWKSALREGDAAIAA-----GADF----SPQLSMCRVE 394 (714)
Q Consensus 356 --------------------------------~~a~~~~~~g~~~~Al~~~~~al~~-----~p~~----~~~~~~~la~ 394 (714)
+.|..++..|++.+|...|..++.. +++. ...+.+++|.
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 2344445555555665555555544 1111 1113445566
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
++..+++++.|.+.|..+++.+|.. ..++..+|......++..+|...++.++..+..++++|.++
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~Y--------------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGY--------------IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchh--------------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 6666666666666666666666655 55677777666677888888888888888888888888877
Q ss_pred HhHHHHH------------------------HHHHHHhHHh------------hCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 475 NNVKLVA------------------------RARARGNDLF------------KSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 475 ~~l~~~~------------------------~~~~~g~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
.++.... ....+|++++ ..+.+++|++.|.++|+.+|.|..+-+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 7542211 1235566654 345678899999999999998866666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhh
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHAQVSLK 596 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~~~~l~ 596 (714)
.+|.++...|++.+|+.+|.++.+--.++..+|.++|.||..+|+|-.|++.|+.+++..- ++.++...|.++.....
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 6666666666666666666666655545555666666666666666666666666655332 34555555555544443
Q ss_pred h
Q 005108 597 K 597 (714)
Q Consensus 597 ~ 597 (714)
+
T Consensus 731 ~ 731 (1018)
T KOG2002|consen 731 K 731 (1018)
T ss_pred h
Confidence 3
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.5e-23 Score=223.85 Aligned_cols=353 Identities=17% Similarity=0.116 Sum_probs=293.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
..-.|+|.-.++..|.+.+..++|..|+.+|++++..+|.. +.....+|.|+.++++.+.|+..|+++++++|.++.++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 45689999999999999999999999999999999999865 56778889999999999999999999999998877777
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhhcC--CCChHHHHH----------------------------HHHHHHHHHHhHH
Q 005108 314 QRLGSLLVRLGQ---VENARRHLCLSGQ--QADPTEVHR----------------------------LQVVEKHLSKCTD 360 (714)
Q Consensus 314 ~~la~~~~~~g~---~~~A~~~~~~al~--~~~~~~~~~----------------------------l~~~~~~~~~a~~ 360 (714)
..||.+-....+ +..++..+.++.. ..+|..... ....+.++.+|..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 776665544332 3444444444433 222222211 2344568889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
|...|++++|..+|.++++.++++..-.++.+|.+|+..|+++.|+.+|+++++..|++ ..+...+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--------------~etm~iL 382 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--------------YETMKIL 382 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--------------HHHHHHH
Confidence 99999999999999999999998755556679999999999999999999999999998 7788889
Q ss_pred HHHHHHhC----cHHHHHHHHHHHhccCCCCHHHHHHHHhHHH--------------------------HHHHHHHHhHH
Q 005108 441 AQIEMALG----RFENAVTAAEKAGQIDPRNVEVAVLLNNVKL--------------------------VARARARGNDL 490 (714)
Q Consensus 441 a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~--------------------------~~~~~~~g~~~ 490 (714)
|.+|...+ ..++|..++.++++..|.+.++|..+..+.. .+.+.+.|..+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 99998875 6789999999999999999999988766421 12246789999
Q ss_pred hhCcCHHHHHHHHHHhhcc-----CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRF-----DPS-----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
+..|++++|...|.+++.. +++ +....|++|.++..+++++.|.+.|..+++..|.+.+++.++|.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 9999999999999999876 221 133689999999999999999999999999999999999999988888
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.+...+|...+..+++.+..+++++..++..+....+++..
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 89999999999999999999999999999877766665543
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=8.9e-23 Score=236.24 Aligned_cols=294 Identities=16% Similarity=0.065 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 260 EALSMYDKAISLAPR--NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 260 ~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+...+.+++..+|. ++.+|+.+|.|+.. +++++|+..|.+++...|++. .+..+|.++...|++++|+..|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345555666666777 89999999999998 899999999999999999754 46677888889999999999999887
Q ss_pred CCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 338 QQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
....... .++..+..+...|++++|+.+|+++++.+|+.. ..+..++......|++++|+..|+++++++|
T Consensus 537 ~~~p~~~--------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 537 LHDMSNE--------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred ccCCCcH--------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 6322221 245556778899999999999999999988753 4444466666677999999999999999999
Q ss_pred CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHH
Q 005108 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497 (714)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~ 497 (714)
+ ...+..+|.++.+.|++++|+..|++++.++|++..++..+ |.++...|+++
T Consensus 608 ~---------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL------------G~aL~~~G~~e 660 (987)
T PRK09782 608 S---------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL------------GYALWDSGDIA 660 (987)
T ss_pred C---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHCCCHH
Confidence 5 55789999999999999999999999999999999988866 99999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.|+++..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 005108 578 LPDDNEIAESLFHAQ 592 (714)
Q Consensus 578 ~p~~~~~~~~L~~~~ 592 (714)
+|... +......+.
T Consensus 741 ~~~~~-a~~~~g~~~ 754 (987)
T PRK09782 741 SFDSS-IGLRSGAMS 754 (987)
T ss_pred Cccch-hccccchHh
Confidence 98876 444444433
No 27
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=193.49 Aligned_cols=269 Identities=14% Similarity=0.070 Sum_probs=199.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAP----------RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.+++...|.+.|-..+...++.+- .+.+.-..+|.||+++|.+.+|.+.++..++..|. ++.+..|+.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 356778889999888777766532 12444566899999999999999999999988764 7889999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|.+..+...|+..|.+.++. .|. ...+....++++..+
T Consensus 266 Y~ridQP~~AL~~~~~gld~-----------------------------------------fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS-----------------------------------------FPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc-----------------------------------------CCc-hhhhhhhhHHHHHHH
Confidence 99999998888887665542 232 233344467777777
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
+++++|+++|+.+++.+|.+ ..+...+|.-|+..++.+-|+.+|++.+++.-.+++.+..+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~n--------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni----- 364 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPIN--------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI----- 364 (478)
T ss_pred HhHHHHHHHHHHHHhcCCcc--------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH-----
Confidence 77777777777777777777 44555566667777777777777777777777777776655
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC--C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDP--S-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.+++..++++-++..|++++.... + -.++|+++|.+....|++.-|..+|+-++..++++.+++.+||.
T Consensus 365 -------gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 365 -------GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred -------HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 7777777777777777777776532 2 25777888877777888888888888887777887888888888
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
+-.+.|+.++|..+++.+-...|+-.+...+
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 7778888888888887777777765554433
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=1.1e-21 Score=226.44 Aligned_cols=411 Identities=13% Similarity=0.036 Sum_probs=315.2
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------------------------------- 274 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------------------------------- 274 (714)
.+...+..+...|...|..+...|.+.|++++|+++|+++++....
T Consensus 176 ~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 176 DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 3444444555568889999999999999999999999999765321
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 275 --NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 275 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|++.|+++.. ...++..
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~------ 326 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF------ 326 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------
Confidence 23345667888999999999999998764 45788999999999999999999999999865 2233322
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
.+..+...+.+.|++++|.+.+..+++.+.......+..+...|.+.|++++|.+.|+++.+. +
T Consensus 327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d------------ 390 (697)
T PLN03081 327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---N------------ 390 (697)
T ss_pred -HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---C------------
Confidence 233344557889999999999999999987767788888999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
...|..+...|.+.|+.++|+++|+++.+ ..|+..... .+ ...+.+.|++++|.++|+++.+.
T Consensus 391 --~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~l------------l~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 391 --LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-AV------------LSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred --eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH------------HHHHhcCCcHHHHHHHHHHHHHh
Confidence 44699999999999999999999999876 455544432 22 56788999999999999998764
Q ss_pred C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 510 D--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 510 ~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
. ..+...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++...+..
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 2 224578889999999999999999999875 24454 5689999999999999999999999999999999888888
Q ss_pred HHHHHHHhhhhccccccccccccceeeehhhhHHhhhccCCCc-------eEEEeecC--CCccccccchHHHHHHhhC-
Q 005108 588 LFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGV-------SVVHFKSA--SNLHCKQISPYVETLCGRY- 657 (714)
Q Consensus 588 L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~e~~~~~i~~~~~-------~vv~f~a~--~c~~C~~~~p~l~~l~~~~- 657 (714)
|..++...+++++.... .....-+.+...++. .+..|.+. .++.+.+++..++++..+.
T Consensus 534 L~~~y~~~G~~~~A~~v-----------~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKV-----------VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred HHHHHHhCCCHHHHHHH-----------HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 88887777665432221 111111111112222 23445553 4777888888888887664
Q ss_pred -----CCcEEEEEeccc----------CcchhhhCCccccc---eEEEEeCCe
Q 005108 658 -----PSINFLKVDIDE----------SPGVAHAENVRIVP---TFKIYKNGS 692 (714)
Q Consensus 658 -----~~~~~~~vd~d~----------~~~l~~~~~v~~~P---t~~~~~~G~ 692 (714)
|+..++..|+++ +++||.+||+...| ++.|+||=.
T Consensus 603 ~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr 655 (697)
T PLN03081 603 EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHR 655 (697)
T ss_pred HcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCE
Confidence 566777777764 77899999999998 578888843
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-21 Score=196.27 Aligned_cols=303 Identities=15% Similarity=0.148 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----------------------------c
Q 005108 273 PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR-----------------------------L 323 (714)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-----------------------------~ 323 (714)
..+...++..|.++.+.|...+|+..|..++...|-+..+|..|+.+... .
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999998888765432 2
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
.+.++++.-++......-+.. .......+.+.....|+++|+..|+.+.+.+|-....+-. ..++++-..+-.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl-ySN~LYv~~~~s 313 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNS------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL-YSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHhccCCcc------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH-HhHHHHHHhhhH
Confidence 222333332222222100000 0111224566778889999999999999988843333332 444444444433
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARA 483 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 483 (714)
+-.-..+.+..++.-. ......+|+.|...++.++|+.+|+++++++|....+|.++
T Consensus 314 kLs~LA~~v~~idKyR--------------~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm--------- 370 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYR--------------PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM--------- 370 (559)
T ss_pred HHHHHHHHHHHhccCC--------------ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh---------
Confidence 3333444445555444 44577889999999999999999999999999999999987
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
|.-|..+++-..|++.|+.|++++|.|..+|+.+|+.|.-++...=|+-+|++|+++.|+|...|..||.||.++++
T Consensus 371 ---GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 371 ---GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred ---hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccccc
Q 005108 564 WADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKF 608 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~~ 608 (714)
.++|+++|.+++.....+..+...|++++..++...+...+..++
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999888999999999999999887776655443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=4e-21 Score=206.90 Aligned_cols=319 Identities=18% Similarity=0.202 Sum_probs=263.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
....++..|+.++..|++++|..++.++|+++|.++.+|+.+|.+|.++|+.++|...+-.|-.++|.+.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS----PQLSMCRVEAL 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~ 396 (714)
.++|++.+|+-+|.++++..++. .+..+.++..|.+.|+...|...|.+++...|... .+.....+..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999744443 24566777889999999999999999999999322 23334467788
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHH-----
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVE----- 469 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~----- 469 (714)
...++-+.|++.++.++....+-. ....+..++.+++...+++.|+........ ..+++.+
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~------------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEA------------SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccc------------cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 888888999999999987332221 123456778889999999999887766543 1111111
Q ss_pred ---------------------H-HHHHHh-----------------------HHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 470 ---------------------V-AVLLNN-----------------------VKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 470 ---------------------~-~~~l~~-----------------------l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
+ ...+.- .....-+.+++.+|...|+|.+|+.+|.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1 111000 0223346788999999999999999999
Q ss_pred HhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 505 EGLRFDPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 505 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+....+. +..+|+.+|.||..+|.+++|++.|++++.+.|++.++...|+.++.++|+.++|.+.++....-+
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99887654 478999999999999999999999999999999999999999999999999999999999877333
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-21 Score=198.60 Aligned_cols=288 Identities=18% Similarity=0.178 Sum_probs=247.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
++.+.+...++.++..++|++.++.++..++.+|-+..++-....|+.++|+..+=...-.+.++..|+.+..|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 46788888899999999999999999999999988877776666688899988888877888888899988889988888
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|...|++.+|.++|. ++..++|.+.+.+. ..|..|...
T Consensus 322 Yl~i~k~seARry~S-----------------------------------------Kat~lD~~fgpaWl-~fghsfa~e 359 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFS-----------------------------------------KATTLDPTFGPAWL-AFGHSFAGE 359 (611)
T ss_pred HHHhcCcHHHHHHHH-----------------------------------------HHhhcCccccHHHH-HHhHHhhhc
Confidence 888888777777764 44566776655544 489999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
++.|+|+.+|..|-++-|.. ..-...+|.-|...++++-|.++|.+|+.+.|.++-+...+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~--------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El----- 420 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGC--------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL----- 420 (611)
T ss_pred chHHHHHHHHHHHHHhccCC--------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh-----
Confidence 99999999999999988887 44567788999999999999999999999999999887655
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC----C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDP----S---NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|.+.+..+.|.+|..+|+.++..-+ . -...+.+||.+|.+++++++|+.+|+++|.+.|.+..++-
T Consensus 421 -------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 421 -------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred -------hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 9999999999999999999984321 1 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.+|.+|..+|+++.|+++|.+++-+.|++.-+.+.|..+....
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888766553
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=7.2e-23 Score=209.75 Aligned_cols=264 Identities=23% Similarity=0.302 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISL--APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
..+.+|..++..|++++|++++++.+.. .|++..+|..+|.+...++++++|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346799999999999999999776544 488899999999999999999999999999999999888888888888 6
Q ss_pred HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005108 322 RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ 401 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 401 (714)
..+++++|+.+++++.+. .+ .+..+...+.++...++
T Consensus 89 ~~~~~~~A~~~~~~~~~~-----------------------------------------~~--~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER-----------------------------------------DG--DPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred cccccccccccccccccc-----------------------------------------cc--ccchhhHHHHHHHHHhH
Confidence 888888888877554321 11 12233345667888888
Q ss_pred HHHHHHHhhccccCC--CCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 402 LEDAESSLSNIPKIE--PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 402 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
++++...++++.... +.+ ...|..+|.++.+.|+.++|+..|+++++.+|++..++..+
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l----- 186 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDS--------------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL----- 186 (280)
T ss_dssp HHHHHHHHHHHHH-T---T---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH-----
T ss_pred HHHHHHHHHHHHhccCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH-----
Confidence 988888888876544 333 77899999999999999999999999999999999988766
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+.++...|+++++.+.++...+..|.++.++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++.
T Consensus 187 -------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 187 -------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred -------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 8889999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHh
Q 005108 560 KLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~ 577 (714)
..|++++|..+++++++.
T Consensus 260 ~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 260 QAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 999999999999988764
No 33
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4e-20 Score=182.21 Aligned_cols=316 Identities=13% Similarity=0.018 Sum_probs=272.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 325 (714)
+..+.++....-+.-+..++-.-...-|+|...+..+|.+++..|++++|+..|+++.-+||......-.+|.++.+.|+
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 34555555555666677777777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005108 326 VENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDA 405 (714)
Q Consensus 326 ~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 405 (714)
+++-...........+.. ...|+-.+......+++..|+.+-+++|..++.+.+.+. ..|.++...++.++|
T Consensus 282 ~e~~~~L~~~Lf~~~~~t-------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali-lKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYT-------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI-LKGRLLIALERHTQA 353 (564)
T ss_pred HhhHHHHHHHHHhhhhcc-------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH-hccHHHHhccchHHH
Confidence 988766655544322111 123444455577889999999999999999998766554 599999999999999
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
+-.|+.+..+.|.. ...|..+..+|...|++.||....+.++...|.+...+.++
T Consensus 354 ~IaFR~Aq~Lap~r--------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~----------- 408 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYR--------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF----------- 408 (564)
T ss_pred HHHHHHHHhcchhh--------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh-----------
Confidence 99999999999988 77899999999999999999999999999999998887766
Q ss_pred HH-h-HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 486 RG-N-DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 486 ~g-~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
| . ++..----++|.+++++++++.|....+...+|.++...|.+++++..+++.+...|++ ..+..||.++...+.
T Consensus 409 -g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 409 -GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred -cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 4 3 33444567899999999999999999999999999999999999999999999999885 588999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 564 WADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
+++|+++|..|+.++|++....+.|.......+
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999999999999999987766554
No 34
>PLN03077 Protein ECB2; Provisional
Probab=99.88 E-value=7.5e-20 Score=216.43 Aligned_cols=400 Identities=16% Similarity=0.049 Sum_probs=272.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA--PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP-NYWRA 312 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a 312 (714)
.+...|...|..+...|.+.|++++|+++|+++.+.. |+. ..+..+-.++...|++++|.+.++.+++... .+..+
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 3444556666666666666666666666666665432 332 2333333344455555555555555544332 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH--------------
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAI-------------- 378 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al-------------- 378 (714)
+..+...|.+.|++++|++.|+++.+. +...+..+. ..|.+.|++++|+..|++++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi---------~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSII---------AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHH---------HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 777777777788888887777776542 222222111 11344555555555555554
Q ss_pred --------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 379 --------------------AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 379 --------------------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
+.+......++..+..+|.+.|++++|...|+.. +.+ ...|.
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d--------------~~s~n 558 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD--------------VVSWN 558 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC--------------hhhHH
Confidence 4433333334455668899999999999999886 233 56899
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCCC
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---DPSN 513 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~ 513 (714)
.+...|...|+.++|+++|+++.+ ..|+....... -..+.+.|++++|.++|+++.+. .| +
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l-------------l~a~~~~g~v~ea~~~f~~M~~~~gi~P-~ 624 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL-------------LCACSRSGMVTQGLEYFHSMEEKYSITP-N 624 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH-------------HHHHhhcChHHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999886 45666554433 34588899999999999998843 34 5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
...|..+..+|.+.|++++|.+.++++ .+.|+ ..+|..+-..+...++.+.+....+++++++|++...+..|..++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 688999999999999999999999986 35666 6778888888888999999999999999999999999999999888
Q ss_pred HhhhhccccccccccccceeeehhhhHHhhhccCCCc-------eEEEeec--CCCccccccchHHHHHHhhC------C
Q 005108 594 SLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGV-------SVVHFKS--ASNLHCKQISPYVETLCGRY------P 658 (714)
Q Consensus 594 ~l~~~~~~~~~~~~~~~~~~~i~~~e~~~~~i~~~~~-------~vv~f~a--~~c~~C~~~~p~l~~l~~~~------~ 658 (714)
..++|++... +.....-..+...++. .+..|.+ ..+++..+|+..++++..++ |
T Consensus 703 ~~g~~~~a~~-----------vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 703 DAGKWDEVAR-----------VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred HCCChHHHHH-----------HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 8777664322 2222222222222321 2344544 35888889999999887765 4
Q ss_pred CcEEEEEeccc----------CcchhhhCCccccc---eEEEEeCCe
Q 005108 659 SINFLKVDIDE----------SPGVAHAENVRIVP---TFKIYKNGS 692 (714)
Q Consensus 659 ~~~~~~vd~d~----------~~~l~~~~~v~~~P---t~~~~~~G~ 692 (714)
+..++. |+++ +++||.+||+..+| ++.|+||=.
T Consensus 772 ~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr 817 (857)
T PLN03077 772 SESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLY 817 (857)
T ss_pred Ccchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCE
Confidence 555444 4332 78899999999998 477878744
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=190.85 Aligned_cols=340 Identities=19% Similarity=0.173 Sum_probs=267.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (714)
++.|+....-.++|++++++.+|.+|+++|+.++..-|.- ..++.++|..+.+.|+|++|+..|+.+++..|+..
T Consensus 231 kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~ 310 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI 310 (840)
T ss_pred cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH
Confidence 4566666777788889999999999999999988877742 55777888888888888888888888888888654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCC-------------CChHHHH--------HHH--------------------
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQ-------------ADPTEVH--------RLQ-------------------- 349 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~--------~l~-------------------- 349 (714)
+-++|..+++..|+-++-.+.|.+++.. .+|.... .+.
T Consensus 311 -a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki 389 (840)
T KOG2003|consen 311 -AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI 389 (840)
T ss_pred -hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3445666777777777777777776541 0111000 000
Q ss_pred ------------------------------------------------------------------------HH------
Q 005108 350 ------------------------------------------------------------------------VV------ 351 (714)
Q Consensus 350 ------------------------------------------------------------------------~~------ 351 (714)
.+
T Consensus 390 iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg 469 (840)
T KOG2003|consen 390 IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG 469 (840)
T ss_pred hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc
Confidence 00
Q ss_pred ---------------------HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhh
Q 005108 352 ---------------------EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLS 410 (714)
Q Consensus 352 ---------------------~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (714)
....+++.+.+..|++++|.+.|++++..+.. ..+.++++|..+..+|++++|+.+|-
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 00000122233567888888888888877655 34555668888888888888888888
Q ss_pred ccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH
Q 005108 411 NIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490 (714)
Q Consensus 411 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~ 490 (714)
++..+--++ +.+++.++.+|..+.+..+|++++-++..+-|+++.++..+ |.+|
T Consensus 549 klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl------------~dly 602 (840)
T KOG2003|consen 549 KLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL------------ADLY 602 (840)
T ss_pred HHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH------------HHHh
Confidence 776665555 77888999999999999999999999999999999888766 8999
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
-+.|+-.+|.+++-...+..|.+.+...+||..|....-+++|+.+|+++--+.|+.....+.++.|+.+.|+|++|.+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhhhccccc
Q 005108 571 FEVLRRELPDDNEIAESLFHAQVSLKKSRGEEV 603 (714)
Q Consensus 571 ~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~ 603 (714)
|+..-+..|++.+....|.++.-.++-.+.++|
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl~d~key 715 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEY 715 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccchhHHHH
Confidence 999999999999999888887766665544444
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.6e-19 Score=201.52 Aligned_cols=328 Identities=13% Similarity=0.068 Sum_probs=256.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
....+..+|..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..+|.+... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 344444558899999999999999999999999999999999999999999999999999999999986554 6667777
Q ss_pred HHcCCHHHHHHHHHhhcCC-C-ChHHHHHH--------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQQ-A-DPTEVHRL-------------------------------------------------- 348 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~-~-~~~~~~~l-------------------------------------------------- 348 (714)
...++..+|++.|++++.. + +......+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6678887799999988762 1 11111100
Q ss_pred ------------HHHH------------------HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 349 ------------QVVE------------------KHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 349 ------------~~~~------------------~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
..++ ..+.+...+...+++.++++.|+.+..........+....|.+|+.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 0000 0111223344667778888888777766645455666678999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC------------
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR------------ 466 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 466 (714)
+++.++|+.+|+.++...+.... .-........|...|+..++|++|..++++..+..|-
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~--------~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFR--------NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccC--------CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 99999999999999876542100 0001223466788899999999999999999875551
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
|++.. .....++.++...|++.+|++.+++.+...|.|..++..+|.++...|.+.+|+..++.++.++|+
T Consensus 412 n~d~~---------~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 412 NDDWI---------EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred CccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 11111 111234888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+..+...++.++..+++|.+|....+++++..|+++.+..
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999999999999997765
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=1.3e-19 Score=174.71 Aligned_cols=305 Identities=17% Similarity=0.171 Sum_probs=249.5
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--- 309 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 309 (714)
.....+|++-.+++..|..|+..|+-.-|+.-+.+++++.|+...+...+|.+++++|++++|+..|+.+++-+|.+
T Consensus 63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred HHHHHHHH------------HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Q 005108 310 WRAHQRLG------------SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAA 377 (714)
Q Consensus 310 ~~a~~~la------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~a 377 (714)
.+++..++ ..+...|++..|+.++.+.++...-. +..+..++.+|...|+...|+.-+..+
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33333333 33445688889998888877532222 234556788899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 378 IAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 378 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
-++..++ .+.++.++.+++..|+.+.++...++.++++|+... .-.++..+....-...-+......++|.++++..
T Consensus 216 skLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 216 SKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred Hhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9988774 566667999999999999999999999999999732 2222222333333344456667789999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
++.++.+|....+.+... +.+..++...+++.+|+..+.++|+++|++..+++.+|.+|+-..+|+.||..|
T Consensus 293 e~vlk~ep~~~~ir~~~~--------r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGF--------RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHhcCCcccceeeeee--------heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999998655443221 124778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 005108 538 NQALLIQPNYTKALLRRA 555 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la 555 (714)
++|.+.++++..+...+-
T Consensus 365 e~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 365 EKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHhcCcccHHHHHHHH
Confidence 999999999987765443
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.1e-19 Score=201.93 Aligned_cols=157 Identities=11% Similarity=-0.029 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC----CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPR----NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
++....|..|+.+++.++|+.+|++++.-.+. ..+.. ....+-..|...++|++|..++++..+..
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 34455566667777777777777776654421 11110 01134778899999999999999998844
Q ss_pred C---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 511 P---------------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 511 p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
| +...+...++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4 2357788899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 576 RELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 576 ~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.++|++..+...+..+...+.++++.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999888888777654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=4.5e-19 Score=191.04 Aligned_cols=305 Identities=14% Similarity=0.005 Sum_probs=247.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW-RAHQRLGSL 319 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~ 319 (714)
........|...+..|+++.|.+.+.++.+..|+....+...|.++.++|++++|.++++++.+..|++. .+...++.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3556678899999999999999999999999998888889999999999999999999999999988875 566667999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM---CRVEAL 396 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~---~la~~~ 396 (714)
+...|++++|+..++++.+..+... ..+...+..+...|+|++|++.+.+..+........... .....+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~-------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHK-------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987322211 123345566899999999999999999886543333321 122222
Q ss_pred HHcCCHHHHHHHhhccccCCC----CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEP----STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
...+..+++.+.+.++.+..| ++ ...+..++..+...|++++|++.++++++..|++....+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~--------------~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHN--------------IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCC--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 444444555556666666666 34 778999999999999999999999999999999875321
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCCH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS--VLYCNRAACWFKLGQWERSVEDSN--QALLIQPNYT 548 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~ 548 (714)
.+ -........++.+++++.++++++..|+++ .++..+|.++++.|+|++|.++|+ ++++..|+..
T Consensus 302 ~~----------l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 302 PL----------CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HH----------HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 11 013344556889999999999999999999 899999999999999999999999 6888889866
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
. +..+|.++.++|+.++|.++|++++..
T Consensus 372 ~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 372 D-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 669999999999999999999998764
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=2e-19 Score=201.05 Aligned_cols=247 Identities=13% Similarity=0.017 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGL---------GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
+++|+.+|+++++++|+++.+|..+|.+|..+ +++++|+..++++++++|++..+|..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 45566666666666666666665555555432 225566666666666666666655555555555444444
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+..| +++++++|++ ...+..+|.++...|++++|+..
T Consensus 357 A~~~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 357 GSLLF-----------------------------------------KQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 44433 3444445542 33344456666666666666666
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHH
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARG 487 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g 487 (714)
++++++++|.+ ...++.++.+++..|++++|+..+++++... |+++..+..+ |
T Consensus 395 ~~~Al~l~P~~--------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l------------a 448 (553)
T PRK12370 395 INECLKLDPTR--------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ------------V 448 (553)
T ss_pred HHHHHhcCCCC--------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH------------H
Confidence 66666666655 2233334444555556666666666655443 4455444433 5
Q ss_pred hHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Q 005108 488 NDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 567 (714)
.++...|++++|+..+++++...|.+..++..++..|...|+ +|...++++++..-....-......+|.-.|+.+.+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 555556666666666665555555555555555555555552 444444444432211111112244555555555555
Q ss_pred HHHHHHHH
Q 005108 568 VRDFEVLR 575 (714)
Q Consensus 568 ~~~~~~al 575 (714)
... +++.
T Consensus 527 ~~~-~~~~ 533 (553)
T PRK12370 527 KMW-NKFK 533 (553)
T ss_pred HHH-HHhh
Confidence 444 4433
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=6.1e-18 Score=175.56 Aligned_cols=322 Identities=16% Similarity=0.094 Sum_probs=267.5
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
...|.+-..|...+..--.-|..++-..++++++...|.....|...+..+...|+...|...+..+++.+|++.+.|+.
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 46677777777777777777888888888888888888888888888888888899999999999999999999899988
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
...+.....+++.|..+|.++....... ..++.-+.....+++.++|++.++++++..|++ ..+|..+|.+
T Consensus 624 avKle~en~e~eraR~llakar~~sgTe--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi 694 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTE--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQI 694 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcc--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHH
Confidence 8888899999999999998886633322 224444455667899999999999999999985 6777889999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+.++++.+.|.+.|...++.-|.. .-.|..++.+..+.|+.-.|...++++.-.+|++...|...
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~--------------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~- 759 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNS--------------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES- 759 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCC--------------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH-
Confidence 999999999999999999999998 66899999999999999999999999999999999999765
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
...-++.|+.++|...+.+||+..|++..+|..-..+.-.-++-.++++. ++...+++.++...|
T Consensus 760 -----------Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA----Lkkce~dphVllaia 824 (913)
T KOG0495|consen 760 -----------IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA----LKKCEHDPHVLLAIA 824 (913)
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH----HHhccCCchhHHHHH
Confidence 66788899999999999999999998888777666666555554444443 344556777888888
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
..+....++++|.+.|+++++.+|++.+++-.+.+.+...+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 88888888888888888888888888888877777666665
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=191.22 Aligned_cols=266 Identities=14% Similarity=0.074 Sum_probs=214.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 005108 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG 324 (714)
Q Consensus 245 ~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 324 (714)
-+..|..+++.|++.+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHH
Q 005108 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 325 ~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~ 403 (714)
.-.+|+.++.+.+....+........................+..-.+.|-.+....|. ..++++..+|.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999998865322221111000000000000001111223344555566666663 67889999999999999999
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARA 483 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 483 (714)
+|+.+|+.++...|++ ...|..+|-.+..-.+.++|+..|++|+++.|....+++.+
T Consensus 448 raiDcf~~AL~v~Pnd--------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl--------- 504 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPND--------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL--------- 504 (579)
T ss_pred HHHHHHHHHHhcCCch--------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh---------
Confidence 9999999999999999 88999999999999999999999999999999999999877
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------HHHHHHHHHHHHHhCCHHHHHHH
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN----------SVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
|..++.+|.|++|+++|-.||.+.+.. ..+|..|=.++..+++.+-+...
T Consensus 505 ---gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 505 ---GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ---hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999999999999999999886541 24666666666666666654443
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=1e-17 Score=179.64 Aligned_cols=300 Identities=12% Similarity=0.030 Sum_probs=236.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-HHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-AAALTGLGRIGEAVKECEEAVRLDPNYWRA-HQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~ 318 (714)
.+...+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+..+.|+++.|..+|+++.+.+|++..+ ....+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 345667889999999999999988887665533 34555555 666699999999999999999999987544 345599
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS-------MC 391 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-------~~ 391 (714)
++...|++++|+..++++.+..+... ......+..|...|+|++|++.+.++.+.......... ..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987332221 12333455688889999999999999988765333222 11
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+........+.+...++++...+..|++ ..+...++..+...|+.++|.+.++++++. +.+....
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~--------------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~ 299 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQ--------------VALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLV 299 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHH
Confidence 1222233344566666667766666666 778999999999999999999999999995 4455543
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
..+ + ....++.+++++.+++.++.+|+++..+..+|.++...++|++|.++|+++++..|++ ..+
T Consensus 300 ~l~------------~--~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~ 364 (398)
T PRK10747 300 LLI------------P--RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDY 364 (398)
T ss_pred HHH------------h--hccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHH
Confidence 322 3 3355999999999999999999999999999999999999999999999999999996 456
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 552 LRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 552 ~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
..++.++.++|+.++|.++|++++.+.
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 789999999999999999999998764
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=172.79 Aligned_cols=245 Identities=13% Similarity=0.014 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 323 (714)
....+|++|+..|.+.+|...++.+++..| .++.+..++.+|.+..+...|+..|.+.++..|.++..+...+.++..+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 345789999999999999999999999886 5788999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
+++++|+++|+.+ ++.+|.+. +...+++.-|+.-++.+
T Consensus 304 ~~~~~a~~lYk~v-----------------------------------------lk~~~~nv-EaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 304 EQQEDALQLYKLV-----------------------------------------LKLHPINV-EAIACIAVGYFYDNNPE 341 (478)
T ss_pred HhHHHHHHHHHHH-----------------------------------------HhcCCccc-eeeeeeeeccccCCChH
Confidence 8888888777554 44444432 22334677788888888
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC---CCHHHHHHHHhHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP---RNVEVAVLLNNVKLV 480 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~l~~~ 480 (714)
-|+.+|++++++.-.+ ...+.++|.+++..+++|-++..|++++.... ...++|+.+
T Consensus 342 ~AlryYRRiLqmG~~s--------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl------ 401 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQS--------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL------ 401 (478)
T ss_pred HHHHHHHHHHHhcCCC--------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc------
Confidence 8888888888888777 67788888888888888888888888886543 235566655
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+..++++.+
T Consensus 402 ------g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 402 ------GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred ------ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 88888888999999999988888888889999999988899999999999988888888877777766544
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=8.4e-18 Score=181.54 Aligned_cols=332 Identities=16% Similarity=0.140 Sum_probs=263.1
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
......+.+|.++.+|+.+|.+|-++|+.++|+.++-.|-.++|++...|..++....++|++++|+-+|.+||+.+|.+
T Consensus 161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 34444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQL 388 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~ 388 (714)
....+..+.+|.++|++..|+..|.++++..++..+...... ....+..+...++-+.|++.++.++.... .....-
T Consensus 241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~--i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed 318 (895)
T KOG2076|consen 241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL--IRRVAHYFITHNERERAAKALEGALSKEKDEASLED 318 (895)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccH
Confidence 999999999999999999999999999986655555433322 22335557777888999999999988432 112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhcccc--CCCCCCCc---------------------hhhhh------------------
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPK--IEPSTVSS---------------------SQTRF------------------ 427 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~---------------------~~~~~------------------ 427 (714)
+..++.+++...+++.|+........ ..+++.+. ...+.
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence 44589999999999999888766544 11110000 00000
Q ss_pred -------hh--hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHH
Q 005108 428 -------FG--MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFT 497 (714)
Q Consensus 428 -------~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~ 497 (714)
.+ .......++.++.+|...|++.+|+.+|..+....+.+ ..+|+.+ |.+|..+|.++
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~------------a~c~~~l~e~e 466 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL------------ARCYMELGEYE 466 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH------------HHHHHHHhhHH
Confidence 00 11345678899999999999999999999998876644 3455544 99999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN---------YTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+|+++|++++...|++.++...|+.++.++|+.++|++.++....-++. .......+..++...|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999987633322 2356678889999999998855
Q ss_pred HHHHHHH
Q 005108 569 RDFEVLR 575 (714)
Q Consensus 569 ~~~~~al 575 (714)
..-..++
T Consensus 547 ~t~~~Lv 553 (895)
T KOG2076|consen 547 NTASTLV 553 (895)
T ss_pred HHHHHHH
Confidence 5444444
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=1.6e-17 Score=172.45 Aligned_cols=306 Identities=19% Similarity=0.117 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
+-+.|+..|..+-..|-.-.+..+....|.+.- +.-..|..-+..+.+.+-++-|+..|..+++.+|.....|...+
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 456666666666666666666666666655432 23445666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
..-...|..+.-...|++++..-...... ++-.+..+...|+...|..++..+++.+|. +.++|+....+..
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 66666666666666666666533322211 222233344456666666666666666665 4555655566666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
...+++.|..+|.++....+. ..+|+.-+.+...+++.++|+.+++++++..|+....|..+
T Consensus 630 en~e~eraR~llakar~~sgT---------------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml--- 691 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT---------------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML--- 691 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc---------------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH---
Confidence 666666666666666665555 34566666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|+++.+.++.+.|.+.|...++..|+.+.+|..++.+-.+.|+.-+|...++++.-.+|++...|+.....
T Consensus 692 ---------GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 692 ---------GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred ---------hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCC
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
-.+.|+.+.|...+.+|++..|++
T Consensus 763 ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc
Confidence 666666666666666666554443
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=1.2e-18 Score=194.85 Aligned_cols=239 Identities=12% Similarity=0.001 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGL---GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 278 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
.++.+|..++.. +.+++|+..|+++++++|++..+|..+|.+|...+....
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-------------------------- 313 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-------------------------- 313 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC--------------------------
Confidence 344556544433 357899999999999999999999999998875432110
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
....+++++|+..++++++++|++ ...+..+|.++...|++++|+..|+++++++|++ +
T Consensus 314 ------~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------~ 372 (553)
T PRK12370 314 ------FDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS--------------A 372 (553)
T ss_pred ------cccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------H
Confidence 112356788999999999999985 5667779999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-CCC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-PSN 513 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~ 513 (714)
.+++.+|.++...|++++|+..++++++++|.+...+..+ +.+++..|++++|+..++++++.. |++
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~------------~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK------------LWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH------------HHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 8899999999999999999999999999999988765443 556777899999999999999875 788
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+.++.++|.+|..+|++++|+..+++++...|+...++..++..|..+|+ +|...++++++.
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998884 777777776653
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=9.3e-17 Score=187.73 Aligned_cols=312 Identities=10% Similarity=0.014 Sum_probs=197.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-YWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la 317 (714)
.+...|..+-..+.+.|++++|.++|+++.+... .+...|..+..+|.+.|++++|.+.|+++.+.... +...|..+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555666666666666666666666666655432 24455556666666666666666666666554321 455566666
Q ss_pred HHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHH----------------------------HHHHHHhHHHHHcCC
Q 005108 318 SLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVV----------------------------EKHLSKCTDARKVGD 366 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~----------------------------~~~~~~a~~~~~~g~ 366 (714)
..|.+.|++++|++.|+++.. .++...+..+... ..+..+...|.+.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 666666666666666655543 1121111111110 112223334556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
+++|++.|+++.+.+.......|..+...|.+.|++++|+++|+++.+..-.. +...|..+...|.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-------------D~~TynsLI~a~~k 661 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-------------DEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHh
Confidence 66666666666666554455566666666666666666666666665543221 14456666677777
Q ss_pred hCcHHHHHHHHHHHhccCC-CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc--CCCCHHHHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDP-RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF--DPSNSVLYCNRAAC 523 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 523 (714)
.|++++|+++++++.+... -+...+.. +...|.+.|++++|+++|+++.+. .| +...|..+...
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tyns------------LI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~g 728 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSS------------LMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITA 728 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 7777777777777665432 22333333 377889999999999999988653 34 67889999999
Q ss_pred HHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 524 WFKLGQWERSVEDSNQALLI--QPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
|.+.|++++|++.|+++.+. .|+ ...|..+...+.+.|++++|.++|+++++..
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988763 455 5677778889999999999999999998754
No 49
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=9.2e-17 Score=187.77 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP-NYWRAHQRLG 317 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la 317 (714)
+.+...+..+...+.+.|.+++|+.+|+.+.. | +...|..+..++...|++++|.+.|+++.+... .+...|..+.
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555566677788899999999999988764 4 678899999999999999999999999988653 3578899999
Q ss_pred HHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
..|.+.|++++|.++|+++.+ .++...+..+. ..|.+.|++++|++.|+++...+...+...|..+..
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI---------~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI---------DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH---------HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999986 22333332222 125566667777777766666655445566666666
Q ss_pred HHHHcCCHHHHHHHhhccccC----CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-CCHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKI----EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-RNVE 469 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 469 (714)
.|.+.|++++|.++|.++... .|+ ...|..+...|.+.|++++|+++|+++.+.+. .+..
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD---------------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPD---------------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 666666666666666666432 222 23344444444444444444444444443321 1111
Q ss_pred HHHHHHhH-------H----------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHH
Q 005108 470 VAVLLNNV-------K----------------LVARARARGNDLFKSERFTEACQAYGEGLRFD-PSNSVLYCNRAACWF 525 (714)
Q Consensus 470 ~~~~l~~l-------~----------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 525 (714)
.|..+... . ....+..+...|.+.|++++|+++++++.+.. +.+...|..+..+|.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 11111000 0 00012234677888999999999999988753 346788999999999
Q ss_pred HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCC
Q 005108 526 KLGQWERSVEDSNQALL--IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE--LPDD 581 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~ 581 (714)
+.|++++|++.|+++.+ +.|+ ...|..+...|.+.|++++|+++|+++.+. .|+.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999876 3454 678999999999999999999999988764 4543
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1e-17 Score=161.00 Aligned_cols=283 Identities=19% Similarity=0.118 Sum_probs=233.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
+..|.-+.-..+.++|++.|..+++.+|...+++..||.+|...|..+.|+..-+..+..++.... .++.....++.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~---qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE---QRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHH
Confidence 344555666677888888888888888888888888888888888888888877777665554433 34455667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
.|+..|-++.|...|...... +++.......+..+|....+|++|++..++..++.+... .+..+..|..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~---------~~eIAqfyCE 185 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY---------RVEIAQFYCE 185 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc---------hhHHHHHHHH
Confidence 888888888888888776653 455667777799999999999999999999999988862 2234677889
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYC 518 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 518 (714)
++..+....+++.|+..+.++++.+|+...+-..+ |.++...|+|+.|++.++.+++.+|+. +++..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999999999999999999888877 999999999999999999999999987 67888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.|..||.++|+.++.+..+.++.+..++ ..+...++..-....-.+.|..++.+-++..|+-......+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 8999999999999999999999998877 45667777887788888999999999999998866555443
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=3.9e-18 Score=175.11 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005108 256 GCFGEALSMYDKAISLA---PR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331 (714)
Q Consensus 256 g~~~~Al~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 331 (714)
+..+.++..+.+++... |. .+..|+.+|.+|..+|++++|+..|+++++++|++..+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677888888888643 33 367788899999999999999999999999999888888888888887777777766
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhc
Q 005108 332 HLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411 (714)
Q Consensus 332 ~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (714)
.| +++++++|++ ...+.++|.++...|++++|++.|++
T Consensus 120 ~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 120 AF-----------------------------------------DSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55 3444555553 23344466666666666666666666
Q ss_pred cccCCCCC
Q 005108 412 IPKIEPST 419 (714)
Q Consensus 412 al~~~p~~ 419 (714)
+++++|++
T Consensus 158 al~~~P~~ 165 (296)
T PRK11189 158 FYQDDPND 165 (296)
T ss_pred HHHhCCCC
Confidence 66666655
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=9.1e-20 Score=186.79 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=122.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVR-L-DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~ 357 (714)
+.+|.+++..|++++|++.+++.+. . .|++...|..+|.+...++++++|+..|++++
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-------------------- 71 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-------------------- 71 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------
Confidence 4668888888888888888866544 3 47778888888888888888888877776654
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
..++. .+..+..++.+ ...+++++|+.+++++.+..++ ...+
T Consensus 72 ---------------------~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---------------~~~l 113 (280)
T PF13429_consen 72 ---------------------ASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD---------------PRYL 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------ccccc-ccccccccccc-cccccccccccccccccccccc---------------cchh
Confidence 33222 22233335555 6889999999999998877654 3456
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccC--CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQID--PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
.....++...++++++...++++.... +.++.+|..+ |.++.+.|++++|+.+|+++++.+|++..
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL------------AEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH------------HHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 677788999999999999999977644 5667777665 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
++..++.++...|+++++.+.++...+..|+++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...+..+....
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998888888889999999999999999999999999999999999999999988877
Q ss_pred hhhcc
Q 005108 596 KKSRG 600 (714)
Q Consensus 596 ~~~~~ 600 (714)
++.+.
T Consensus 262 g~~~~ 266 (280)
T PF13429_consen 262 GRKDE 266 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5e-18 Score=174.47 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=218.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+|-+...+-...-+++..|+..+=..+-.+.++..|+.+..|+..|..|...|++.+|.++|.++..+||.+..+|..
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~ 351 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLA 351 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHH
Confidence 35666666665555599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-SPQLSMCRVE 394 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~ 394 (714)
+|..+...+..++|+..|..|. ++-+.. .+.+| +|.
T Consensus 352 fghsfa~e~EhdQAmaaY~tAa-----------------------------------------rl~~G~hlP~LY--lgm 388 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAA-----------------------------------------RLMPGCHLPSLY--LGM 388 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHH-----------------------------------------HhccCCcchHHH--HHH
Confidence 9999999999998888875553 333322 23332 799
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc----CCCCHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI----DPRNVEV 470 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 470 (714)
-|.+.+.++-|.++|.+++.+.|.+ +.++..+|.+.+..+.|.+|+.+|++++.. .+... .
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~D--------------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~ 453 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSD--------------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-F 453 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCc--------------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-c
Confidence 9999999999999999999999999 788999999999999999999999999832 22222 2
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
|.-+ +.++|.++.+++++++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+
T Consensus 454 w~p~--------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 454 WEPT--------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hhHH--------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 3222 23569999999999999999999999999999999999999999999999999999999999999755
Q ss_pred HHHHHHH
Q 005108 551 LLRRAAS 557 (714)
Q Consensus 551 ~~~la~~ 557 (714)
--.|+.+
T Consensus 526 ~~lL~~a 532 (611)
T KOG1173|consen 526 SELLKLA 532 (611)
T ss_pred HHHHHHH
Confidence 5555533
No 54
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=3.7e-17 Score=188.95 Aligned_cols=296 Identities=13% Similarity=-0.003 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD-PNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~ 318 (714)
.|...+..+...|.+.|++++|.+.|+++. +.+...|..+...|.+.|++++|++.|+++.+.. .-+...|..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356677888999999999999999999874 4578899999999999999999999999997643 224678999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQA-DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+.+.|++++|.+.+..+++.. .++. ..+..+...|.+.|++++|.+.|+++.+. +...|..+...|.
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~ 402 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYG 402 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHH
Confidence 9999999999999999887732 2221 22344556688999999999999987642 3456888999999
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc---CCCCHHHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI---DPRNVEVAVLL 474 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 474 (714)
+.|+.++|++.|+++.+..... +..++..+...+...|+.++|.++|+.+.+. .|+. ..+..+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P-------------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~l 468 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP-------------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACM 468 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhH
Confidence 9999999999999988754332 2567888899999999999999999999753 3432 233333
Q ss_pred HhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR 554 (714)
Q Consensus 475 ~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (714)
...|.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...+++++++.|++...|..+
T Consensus 469 ------------i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 469 ------------IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred ------------HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 78899999999999999875 3344 567899999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHh
Q 005108 555 AASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|.+.|++++|.+.++++.+.
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998765
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=1.9e-17 Score=178.38 Aligned_cols=278 Identities=12% Similarity=0.050 Sum_probs=225.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
...|+....+...|..+..+|++++|..+|.++.+..|++. .+....+.++...|++++|+..++++++..|++..++.
T Consensus 112 ~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ 191 (409)
T TIGR00540 112 DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLK 191 (409)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35666777888899999999999999999999999999885 56666799999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQ--ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD---FSPQLS 389 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~ 389 (714)
.++.++...|++++|++.+.+..+. .++.....+.. ..+ ......+..+++.+.+.++....|. ..+.++
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~----~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAE----IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHH----HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 9999999999999999999998873 33333222211 111 1112334445566778888888774 368888
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV- 468 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 468 (714)
..++..+...|++++|++.++++++..|++.. ..............++.+++++.++++++..|+++
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~------------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~ 334 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA------------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK 334 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCccc------------chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh
Confidence 88999999999999999999999999999821 10113333444556889999999999999999999
Q ss_pred -HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 469 -EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG--EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 469 -~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.....+ |.++++.|+|++|.++|+ .+++..|++.. +..+|.++.++|+.++|.++|++++..
T Consensus 335 ~~ll~sL------------g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 335 CCINRAL------------GQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHH------------HHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655555 999999999999999999 67888886655 669999999999999999999998763
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-17 Score=169.48 Aligned_cols=257 Identities=15% Similarity=0.084 Sum_probs=176.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
-.+|...++..++..|+++|.+++... ..........-.++.++......+.-++|++.-....... .........+|
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-KLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-HHHHHHHHHhh
Confidence 445667777778888888888887644 3333333333344444444444455444444333222110 00122222355
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhh------------hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF------------FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
..|...++++.|+.+|.+++............+. ......+.-....|..++..|+|.+|+..|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5666667777777777776654433100000000 0000114445667999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
+.+|++...+... |.+|.+++.+..|+...+++++++|+....|...|.++..+.+|++|++.|++++
T Consensus 386 kr~P~Da~lYsNR------------Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 386 KRDPEDARLYSNR------------AACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred hcCCchhHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 542 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+++|++.++.-.+..|+..+.......+.++++. .++++...|
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~----~dpev~~il 496 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM----ADPEVQAIL 496 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc----cCHHHHHHH
Confidence 9999999999999999887655555555555532 455555544
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.7e-17 Score=163.72 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLG--RIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.-...+-.|+++|+++.|++.++-.-+.+... ..+-.++..+++.+| ++.+|..+.+.++.++..++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 33556778999999999999987665555433 345566776666644 789999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
+..|++++|.+.|.+++.... ...+.+++.+..+..+|+.++|+++|-+.-.+--+ +.+++..++.+|..+.
T Consensus 501 f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~le 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLE 572 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhh
Confidence 999999999999999985322 23467888899999999999999999887665443 5667777999999999
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+..+|++++.++..+-|++ ..++..++.+|-+.|+-.+|..++-......|.+.+....+
T Consensus 573 d~aqaie~~~q~~slip~d--------------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl------ 632 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPND--------------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL------ 632 (840)
T ss_pred CHHHHHHHHHHhcccCCCC--------------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH------
Confidence 9999999999999999998 78999999999999999999999999999999998877665
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-+..|.+.+.+..|..+.-.
T Consensus 633 ------~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 633 ------AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred ------HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hccHHHHHHHHHHH
Q 005108 561 LEKWADAVRDFEVL 574 (714)
Q Consensus 561 ~g~~~eA~~~~~~a 574 (714)
+|- .+|.++-+++
T Consensus 707 lgl-~d~key~~kl 719 (840)
T KOG2003|consen 707 LGL-KDAKEYADKL 719 (840)
T ss_pred ccc-hhHHHHHHHH
Confidence 764 3344444433
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=179.00 Aligned_cols=257 Identities=20% Similarity=0.196 Sum_probs=188.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++. +|.+. +.++.++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~Nl------eaLmaLAV 361 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTNL------EALMALAV 361 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCccH------HHHHHHHH
Confidence 578999999999999999999999999999999999999999999888888887666542 22211 23344444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
.|...|.-.+|+..+++-|...|.+. +. .... ....... ...+...
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~---~l-------~~a~-----------~~~~~~~--------~~s~~~~----- 407 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYV---HL-------VSAG-----------ENEDFEN--------TKSFLDS----- 407 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccch---hc-------cccC-----------ccccccC--------CcCCCCH-----
Confidence 45555555555555555555544311 00 0000 0000000 0000001
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCC--CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDP--RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY 517 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 517 (714)
..+..-.++|-.+....| .++++...| |.+|...|+|++|+++|+.||...|+|..+|
T Consensus 408 --------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L------------GVLy~ls~efdraiDcf~~AL~v~Pnd~~lW 467 (579)
T KOG1125|consen 408 --------SHLAHIQELFLEAARQLPTKIDPDVQSGL------------GVLYNLSGEFDRAVDCFEAALQVKPNDYLLW 467 (579)
T ss_pred --------HHHHHHHHHHHHHHHhCCCCCChhHHhhh------------HHHHhcchHHHHHHHHHHHHHhcCCchHHHH
Confidence 112233455556666666 677887766 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------CHHHHHH
Q 005108 518 CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD----------DNEIAES 587 (714)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~ 587 (714)
+.||..+..-.+.++|+..|++|+++.|.++.++++||.+++.+|.|+||+++|-.||.+.+. +..++..
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765 1357777
Q ss_pred HHHHHHHhhh
Q 005108 588 LFHAQVSLKK 597 (714)
Q Consensus 588 L~~~~~~l~~ 597 (714)
|+.+....+.
T Consensus 548 LR~als~~~~ 557 (579)
T KOG1125|consen 548 LRLALSAMNR 557 (579)
T ss_pred HHHHHHHcCC
Confidence 7765555443
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1.4e-17 Score=170.87 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=159.6
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
.++..+...|++++|+..|+++++.+|+. ...+..+|.++...|++++|+..|+++++++|++ ..
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------~~ 133 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------NY 133 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HH
Confidence 33334444455555555567778888874 6777889999999999999999999999999998 88
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+|..+|.++...|++++|++.|+++++++|+++.... + .......+++++|+..|++++...+.+.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~------------~~l~~~~~~~~~A~~~l~~~~~~~~~~~- 199 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-W------------LYLAESKLDPKQAKENLKQRYEKLDKEQ- 199 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-H------------HHHHHccCCHHHHHHHHHHHHhhCCccc-
Confidence 9999999999999999999999999999999974211 1 2234557899999999988775543222
Q ss_pred HHHHHHHHHHHhCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 005108 516 LYCNRAACWFKLGQWERS--VEDS----NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP-DDNEIAESL 588 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~L 588 (714)
|. .+.++..+|++.++ ++.+ +..+++.|+..++|+.+|.++.++|++++|+.+|+++++++| +..+.+..+
T Consensus 200 -~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 200 -WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred -cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 22 45666667776443 3222 233366777889999999999999999999999999999997 667777766
Q ss_pred HHHHHHh
Q 005108 589 FHAQVSL 595 (714)
Q Consensus 589 ~~~~~~l 595 (714)
.+.....
T Consensus 278 ~e~~~~~ 284 (296)
T PRK11189 278 LELALLG 284 (296)
T ss_pred HHHHHHH
Confidence 6655443
No 60
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=156.40 Aligned_cols=97 Identities=26% Similarity=0.488 Sum_probs=89.4
Q ss_pred hhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 616 SSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 616 ~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+...|+ .+++...+++|+|||+||++|+.+.|.|+++..+|.+ ++|++||+|+..+++..|+|..+||+++||||+.
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~ 127 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEK 127 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEE
Confidence 3334444 5777888999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++|. +.++|+++|+++
T Consensus 128 ~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 128 VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeecccCCHHHHHHHHHHH
Confidence 9999999 999999999986
No 61
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-19 Score=148.85 Aligned_cols=85 Identities=38% Similarity=0.604 Sum_probs=82.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
...++++|+++||+||+.+.|.+.+|+.+|+++.|++||+|+++++++.++|..+|||++||+|+.+.+++|.++++|++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~ 100 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEK 100 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
.|+++
T Consensus 101 ~i~~~ 105 (106)
T KOG0907|consen 101 KIAKH 105 (106)
T ss_pred HHHhc
Confidence 99876
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3e-17 Score=162.10 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=252.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..-|+|...+..+|.+++..|++++|+..|+++.-++|.+....-..|.++...|++++-...-...+..+.....-|+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999989999888778888999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
-+.+++..+++..|+.+-+++++..+.. +..++-++..+...++.++|+-.|..++.+.|. ....|..+..+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~-------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hs 377 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRN-------HEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCccc-------chHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHH
Confidence 9999999999999999999998744333 355777888899999999999999999999886 45677779999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH-HHHHH-hCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA-QIEMA-LGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
|+..|++.+|....+.+++.-|.+ +..+..+| .+++. ----++|.+++++++.+.|....+...
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~s--------------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNS--------------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcc--------------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 999999999999999999999988 66777775 44433 334689999999999999999888776
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
+ +..+...|++++++.++++.+...| +..++..||.++...+.+++|+++|..|++++|++..++..
T Consensus 444 ~------------AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 444 I------------AELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred H------------HHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 6 8889999999999999999999887 56789999999999999999999999999999999866654
Q ss_pred HH
Q 005108 554 RA 555 (714)
Q Consensus 554 la 555 (714)
+-
T Consensus 511 l~ 512 (564)
T KOG1174|consen 511 LR 512 (564)
T ss_pred HH
Confidence 43
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=1.8e-16 Score=169.95 Aligned_cols=272 Identities=13% Similarity=0.053 Sum_probs=212.0
Q ss_pred cHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 241 DAEELKRM-GNELYRKGCFGEALSMYDKAISLAPRNAAFR-SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~-g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
++..++.+ +....+.|++++|..+|.++.+.+|++..+. ...+.++...|++++|+..++++++.+|++..++..++.
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555 6666999999999999999999999985444 445999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+|.+.|+|++|++.+.++.+ ..++.....+.. ..+..+........+.+...+.++..-+..|+ .+.+...++..+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~-~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ-QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH-QVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC-CHHHHHHHHHHH
Confidence 99999999999999988876 223333221111 11222222222333344444444443333343 567778899999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|+.++|.+.++++++..++. ......+ ....++++++++.+++.++.+|+++..+..+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~~---------------~l~~l~~--~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l-- 334 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYDE---------------RLVLLIP--RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL-- 334 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCH---------------HHHHHHh--hccCCChHHHHHHHHHHHhhCCCCHHHHHHH--
Confidence 99999999999999999955542 2222222 3345999999999999999999999988877
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|.++...++|++|.++|+++++..|++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 335 ----------grl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 ----------GQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999975 446689999999999999999999998753
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=3.8e-17 Score=162.18 Aligned_cols=205 Identities=17% Similarity=0.106 Sum_probs=169.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|++.|+++++.+|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+...|++++|+..|++++..... ......+..++.++...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------------~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------------PQPARSLENAGLCALKA 148 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccc----------------------------------------ccchHHHHHHHHHHHHc
Confidence 99999999999998877531110 01233445578888888
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
|++++|...+.++++.+|.+ ...+..++.++...|++++|+.++++++...|.+...+..+
T Consensus 149 g~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 209 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQR--------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG----- 209 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Confidence 88888888888888888776 56777888888888888888888888888777776666544
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
+.++...|++++|..+.+.+....
T Consensus 210 -------~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 210 -------IRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred -------HHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777778888888888777665543
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=5.2e-17 Score=172.67 Aligned_cols=313 Identities=17% Similarity=0.054 Sum_probs=200.0
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA-PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
..+|.|+.+.+.++..|..+++.+.|+++..++++.+ -+++.+|..+|.++...+++.+|+...+.+++-.++|.....
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 4556666666666666666666666666666666663 334556666666666666666666666666666665555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
....+-...++.++|+......+. ...+.....+......-..+.......+..+|+..+.++.. +
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~------------l 619 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS------------L 619 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH------------H
Confidence 555555555666666555544332 00000000000000000000001111111111111111110 0
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+..-...-.++.. +.+. ...|.. ..-.+.....|...+..+...++.++|..++.++-+++|.....|+
T Consensus 620 ~a~~~~~~~se~~---Lp~s-~~~~~~-------~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSS-TVLPGP-------DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred HHhhhhhcccccc---cCcc-cccCCC-------CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 0010111111111 1111 111111 0111223567889999999999999999999999999998888887
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE--DSNQALLIQPNYTKA 550 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~ 550 (714)
.. |..+...|++++|.+.|..++.++|+++.....+|.++.+.|+-.-|.. .+..+++++|.+.++
T Consensus 689 ~~------------G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 689 LR------------GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred Hh------------hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 65 9999999999999999999999999999999999999999999888888 999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|+.+|.++.++|+.++|.++|+.++++++.+|-
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988763
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=7.1e-17 Score=160.25 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=173.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..++++++.+|.. ...+..++.++...|++++|++.++++++..|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 3556677888899999999999999999988874 5566678999999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC--CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID--PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
...+..++.++...|++++|+..+++++... +.....+.. +|.++...|++++|+..|+++++
T Consensus 99 ---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 99 ---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN------------AGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 6678889999999999999999999998753 333444443 38889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.+|++...+..+|.++...|++++|+..++++++..|.+...+..++.++...|++++|..+.+.+.+..|
T Consensus 164 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 164 IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999998888888888899999999999999998888776654
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1e-17 Score=165.85 Aligned_cols=278 Identities=20% Similarity=0.194 Sum_probs=231.5
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
...++|+++..|...+..+...++|++|+-.+++.++++|.....+...+.|+..+++..+|.+.|+ +..++
T Consensus 75 Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~ 146 (486)
T KOG0550|consen 75 AIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY 146 (486)
T ss_pred HHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh
Confidence 3458999999999999999999999999999999999999999999999999999999999998887 12222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
....|+..+++.+. ..++ .......+..+.++...+++++|+..--.++++++.+...++ ..
T Consensus 147 -----------~~anal~~~~~~~~s~s~~-----pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~-vr 209 (486)
T KOG0550|consen 147 -----------KAANALPTLEKLAPSHSRE-----PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY-VR 209 (486)
T ss_pred -----------HHhhhhhhhhcccccccCC-----chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH-hc
Confidence 23344555555544 1111 122344555677889999999999999999999998655554 49
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+.++....+.+.|+..|++++.++|+... ......+......|...|.-.++.|++.+|.++|..+|.++|++.....
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~--sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQK--SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhh--HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 99999999999999999999999999832 2333344455678899999999999999999999999999999866543
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+ +.+++.+..+.|+..+|+..++.++++++....++...|.|+..+++|++|+++|+++++...+
T Consensus 288 kl--------Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KL--------YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HH--------HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33 4467999999999999999999999999999999999999999999999999999999997665
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=4.3e-17 Score=150.27 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+.+...+|..|+..|++..|...+++|++.||++..+|..+|.+|..+|+.+.|.+.|++|+.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcC
Q 005108 322 RLGQVENARRHLCLSGQ 338 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~ 338 (714)
.+|++++|...|++++.
T Consensus 115 ~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 115 AQGRPEEAMQQFERALA 131 (250)
T ss_pred hCCChHHHHHHHHHHHh
Confidence 99999999999988875
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=4.3e-16 Score=165.75 Aligned_cols=347 Identities=18% Similarity=0.055 Sum_probs=281.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD--PNYWRAHQRL 316 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l 316 (714)
.+++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.+|...|.-..|+..+++.+... |.+...+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 36888899999999999999999999999999888888999999999999999999999999999988 7776666665
Q ss_pred HHH-HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH--HHH-------HcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 317 GSL-LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT--DAR-------KVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 317 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~--~~~-------~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
+.+ +...+.+++++.+..+++..................+.+. .+. +.....++++.++++++.+|.+..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 554 4567999999999999986221111111111111222211 111 233456889999999999998654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
. .+.++.-|..+++.+.|+...++++++++.+ .+..|..++.++...+++.+|+...+.++...++
T Consensus 480 ~-if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-------------~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 480 V-IFYLALQYAEQRQLTSALDYAREALALNRGD-------------SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred H-HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 4 4459999999999999999999999997765 3889999999999999999999999999987777
Q ss_pred CHHH---------------------------HHHHH-------h------------------------------H-----
Q 005108 467 NVEV---------------------------AVLLN-------N------------------------------V----- 477 (714)
Q Consensus 467 ~~~~---------------------------~~~l~-------~------------------------------l----- 477 (714)
|... |.... + +
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 3211 11000 0 0
Q ss_pred ----------------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 005108 478 ----------------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535 (714)
Q Consensus 478 ----------------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 535 (714)
.....+...+..+.+.++.++|..++.++-+++|..+..|+..|.++...|++++|.+
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0011123457778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVR--DFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 536 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|..|+.+...+++.+
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999888888 999999999999999999999998887655
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=9.9e-17 Score=147.91 Aligned_cols=206 Identities=19% Similarity=0.175 Sum_probs=114.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
...+.++..|.+.|++..|...++++++.+|++ ...|..+|.+|...|+.+.|.+.|++++.++|++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 344445555556666666666666666666552 3334445556666666666666666666666655
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
..++++.|..++.+|++++|...|++|+. +|.. ...+.. +|.|..+.|+++.|.++|+++++
T Consensus 103 --GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN------------~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 103 --GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLEN------------LGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred --cchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhh------------hHHHHhhcCCchhHHHHHHHHHH
Confidence 45555556566666666666666665553 2222 222222 25555556666666666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++|+.+.....++..+++.|+|..|..++++.....+-..+.+.....+-..+|+-+.|.++=.++.+..|...+..
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 66655555555666666666666666555555554444455555555555555555555555555555555555443
No 71
>PLN03077 Protein ECB2; Provisional
Probab=99.77 E-value=8.2e-16 Score=182.17 Aligned_cols=336 Identities=14% Similarity=0.086 Sum_probs=244.8
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------------
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--APR-------------------------------- 274 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--~p~-------------------------------- 274 (714)
.+...+..+...|...|..+...|.+.|++++|+++|+++.+. .|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 3444445566678889999999999999999999999998764 333
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 275 --NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 275 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+..++..+...|.+.|++++|.+.|+++.. .+...|..+...|.+.|++++|++.|+++.+ ...|+...
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t----- 391 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT----- 391 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-----
Confidence 345566667777777777777777776542 3455677777788888888888888877654 22222211
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
+......+.+.|++++|.+.++.+++.+......++..+...|.+.|++++|.+.|+++.+.+
T Consensus 392 --~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d--------------- 454 (857)
T PLN03077 392 --IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD--------------- 454 (857)
T ss_pred --HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---------------
Confidence 111223466789999999999999998887778888889999999999999999999886532
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCCHHHHHHHHhHHH------HHH----------------HHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRNVEVAVLLNNVKL------VAR----------------ARARGN 488 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~l~~------~~~----------------~~~~g~ 488 (714)
...|..+...|...|++++|+.+|++++.. .|+.......+..+.. ... ...+..
T Consensus 455 --~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 --VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred --eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 336888999999999999999999999753 4554443333322111 100 123347
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL--IQPNYTKALLRRAASNSKLEKWAD 566 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~e 566 (714)
.|.+.|++++|...|++. +.+...|..+...|.+.|+.++|++.|+++.+ +.|+. ..+..+...+.+.|++++
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHH
Confidence 788999999999999886 45788999999999999999999999999887 45664 566677778889999999
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHhh
Q 005108 567 AVRDFEVLRRELPD--DNEIAESLFHAQVSLK 596 (714)
Q Consensus 567 A~~~~~~al~~~p~--~~~~~~~L~~~~~~l~ 596 (714)
|.++|+.+.+..+- +.+.+..+..++...+
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999998854432 2344555555444443
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=1.4e-16 Score=169.58 Aligned_cols=258 Identities=19% Similarity=0.173 Sum_probs=193.2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL-- 305 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 305 (714)
...|.-......++..|..+|+|++|+..|+++++. .|.-......+|.+|..++++++|+..|++|+.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 456666777788999999999999999999999988 4544555566899999999999999999999875
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 306 ------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 306 ------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
+|....++.+||.+|...|++++|..++++++ +++++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------------~I~~~~~~ 318 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------------EIYEKLLG 318 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------------HHHHHhhc
Confidence 34557789999999999999999999886664 33333222
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
..+......+.+++.++..++++++|+.++++++++.-+-+. ......+..+.++|.+|..+|+|++|.++|++
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g------~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG------EDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 233334455667888899999999999999988876542211 01123467899999999999999999999999
Q ss_pred HhccCC-----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHh
Q 005108 460 AGQIDP-----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-------DPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 460 al~~~p-----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~ 527 (714)
|+.+.. .+...-..++ ++|..|.+.+++.+|.+.|.+++.+ .|+-...|.+||.+|..+
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~---------~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLN---------QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred HHHHHHhcccCcChhhhHHHH---------HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 997642 2233222232 3488899999999999999887765 234456777788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 005108 528 GQWERSVEDSNQALL 542 (714)
Q Consensus 528 g~~~~A~~~~~~al~ 542 (714)
|++++|+++.++++.
T Consensus 464 g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLN 478 (508)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887777764
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=6e-15 Score=142.10 Aligned_cols=276 Identities=12% Similarity=0.115 Sum_probs=231.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-----WRAHQRLGSLL 320 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~ 320 (714)
|..|..++...+.++|++.|..+++.+|...++++.+|.+|...|..+.||..-+..++. |+. ..+.+.||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999999999988877653 543 56889999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS----PQLSMCRVEAL 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~ 396 (714)
...|-++.|...|....+..+... .+.-.+..+|....+|++|++..++..+++++.. ..+|..++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 999999999999998876444332 2233445568899999999999999999988533 45677788889
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH-HHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE-VAVLLN 475 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~ 475 (714)
....+++.|+..+.++++.+|++ ..+-..+|.++...|+|+.|++.++.+++.+|+... +...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~c--------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~-- 254 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKC--------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM-- 254 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccc--------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH--
Confidence 99999999999999999999999 778899999999999999999999999999998743 3333
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+-.+|...|+.++.+..+.++++..+. +.+...++..-....-.+.|..++.+-+...|+- ..++.+-
T Consensus 255 ----------L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~ 322 (389)
T COG2956 255 ----------LYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLM 322 (389)
T ss_pred ----------HHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHH
Confidence 378899999999999999999998764 5566667777777788899999999999999984 3444443
Q ss_pred HH
Q 005108 556 AS 557 (714)
Q Consensus 556 ~~ 557 (714)
..
T Consensus 323 ~~ 324 (389)
T COG2956 323 DY 324 (389)
T ss_pred Hh
Confidence 33
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=2.9e-16 Score=167.26 Aligned_cols=259 Identities=19% Similarity=0.139 Sum_probs=183.4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc--
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT-EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA-- 380 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~-- 380 (714)
..+|.-..+...++..|..+|+|++|+..++.+++..... ....+.........+..|...+++++|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666665421000 0111111122223566677777777777777777655
Q ss_pred ---CCC--CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHH
Q 005108 381 ---GAD--FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455 (714)
Q Consensus 381 ---~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 455 (714)
+++ .....+.+++.+|...|++++|..++++++++.......... ..+..+..++.++...+++++|+.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHH
Confidence 222 234567779999999999999999999988765442111111 125568889999999999999999
Q ss_pred HHHHHhccC-----CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--------CCCHHHHHHHHH
Q 005108 456 AAEKAGQID-----PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--------PSNSVLYCNRAA 522 (714)
Q Consensus 456 ~~~~al~~~-----p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 522 (714)
++++++++. ++++..-.. ..++|.+|+.+|+|++|.++|++++.+. +.....+.++|.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~---------~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKI---------YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHH---------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 999998653 233222222 2345999999999999999999999863 233567889999
Q ss_pred HHHHhCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 523 CWFKLGQWERSVEDSNQALLI-------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.|.+.+++++|.+.|.+++.+ .|+-...+.+|+.+|..+|++++|+++.++++..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999998875 3455688999999999999999999999988743
No 75
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=5.5e-16 Score=158.61 Aligned_cols=240 Identities=15% Similarity=0.035 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-.+++-.+-.++...+++++|+..++++|+++|++..+|..++.++..+| ++++++..++++++.+|++..+|...+.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 344455444455666778888888888888888888888888888888887 5788888888888888888888887777
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++.++++.
T Consensus 115 ~l~~l~~~------------------------------------------------------------------------ 122 (320)
T PLN02789 115 LAEKLGPD------------------------------------------------------------------------ 122 (320)
T ss_pred HHHHcCch------------------------------------------------------------------------
Confidence 66554421
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.+++++.+++++++.+|.+ ..+|..++.++...|++++|+++++++++.+|.+..+|...
T Consensus 123 --~~~~el~~~~kal~~dpkN--------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R---- 182 (320)
T PLN02789 123 --AANKELEFTRKILSLDAKN--------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR---- 182 (320)
T ss_pred --hhHHHHHHHHHHHHhCccc--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH----
Confidence 0134455666777777877 77888888888888888888888888888888888888765
Q ss_pred HHHHHHHHHhHHhhC---cC----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCC
Q 005108 479 LVARARARGNDLFKS---ER----FTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~---g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 547 (714)
+.++.+. |. .++++++..++|.++|+|..+|+.++.++.. +++..+|++.+.++++.+|+.
T Consensus 183 --------~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 183 --------YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred --------HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 5555443 22 3578889999999999999999999999988 566788999999999999999
Q ss_pred HHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHhCC
Q 005108 548 TKALLRRAASNSKLE------------------KWADAVRDFEVLRRELP 579 (714)
Q Consensus 548 ~~~~~~la~~~~~~g------------------~~~eA~~~~~~al~~~p 579 (714)
..++..|+.+|.... ..++|.+.++.+-+.||
T Consensus 255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 999999999997632 23556666666655554
No 76
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.74 E-value=2.1e-18 Score=145.56 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=77.1
Q ss_pred hHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+. ..++++|+|||+||++|+.+.|.++++..++++ +.|++||+|+.++++..|+|+++|||++||||+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 34555554 467899999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred EEcCC-CHHHH
Q 005108 696 EIVCP-SRDML 705 (714)
Q Consensus 696 ~~~g~-~~~~l 705 (714)
++.|. +..+|
T Consensus 83 ~~~G~~~~~~~ 93 (114)
T cd02954 83 IDLGTGNNNKI 93 (114)
T ss_pred EEcCCCCCceE
Confidence 99986 54443
No 77
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=1.7e-15 Score=154.95 Aligned_cols=222 Identities=13% Similarity=-0.010 Sum_probs=169.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcCCCcHH
Q 005108 235 GGICGGDAEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI--GEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~ 311 (714)
..++|++..+|..++.++...| ++++|+.+++++++.+|++..+|..++.++..+|+. ++++.+++++++++|++..
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 4579999999999999999999 689999999999999999999999999999999874 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
+|..++.++...|++++|++. ++++|+.+|.+.. .|..
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~-----------------------------------------~~~~I~~d~~N~s-AW~~ 181 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEY-----------------------------------------CHQLLEEDVRNNS-AWNQ 181 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHH-----------------------------------------HHHHHHHCCCchh-HHHH
Confidence 999999888776655555443 3555566655322 2222
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
++.++...++. ... ....++++++..+++.++|++..+|
T Consensus 182 R~~vl~~~~~l-------------~~~----------------------------~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 182 RYFVITRSPLL-------------GGL----------------------------EAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHHHhcccc-------------ccc----------------------------cccHHHHHHHHHHHHHhCCCCcCHH
Confidence 43333222110 000 0113578889999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC------------------C
Q 005108 472 VLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG------------------Q 529 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~ 529 (714)
..+ +.++.. .++..+|+..+.++++.+|.+..++..|+.+|.... .
T Consensus 221 ~Yl------------~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 221 RYL------------RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHH------------HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 877 555655 356778999999999999999999999999998632 3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.++|.+.|+.+-+.||--...|
T Consensus 289 ~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 289 STLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHHHHHhhCcHHHHHH
Confidence 4678888887766666443333
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=7.8e-15 Score=156.19 Aligned_cols=315 Identities=12% Similarity=-0.042 Sum_probs=226.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
+|+.+..+..+|..+...|+.++|...+.++.+..+.+ ....+..+.++...|++++|+..++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888999999999999999999999999999887755 566778899999999999999999999999999987777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
. +..+...+++..+.....+++. ...+.. ......++.++...|++++|+..++++++..|+. ...+..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence 5 5555555544444433333332 222222 2234456677899999999999999999999986 455666
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
++.++...|++++|+.++++++...|.+.. .....|..++.++...|++++|+..|++++...|......
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~----------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM----------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcc----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 999999999999999999999998775311 1134577899999999999999999999987666322111
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCc------CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 472 VLLNNVKLVARARARGNDLFKSE------RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+... .+...+...| +|++........... +.........+.++...|+.++|...++.+.....
T Consensus 224 ~~~~~~-------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 224 DLLDAA-------SLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHhhHH-------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 110000 0012222233 232222222111111 12233334688899999999999999988766332
Q ss_pred C---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 546 N---------YTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 546 ~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
. ........+.++...|++++|++.+..++.+-
T Consensus 296 ~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 296 SADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 24666788999999999999999999998764
No 79
>PHA02278 thioredoxin-like protein
Probab=99.71 E-value=2.7e-17 Score=138.39 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccC----cchhhhCCccccceEEEEeCC
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDES----PGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+.|.+.+...++++|+|||+||++|+.+.|.++++..++. .+.|++||+|.. ++++..|+|+++|||++|+||
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 346777777778899999999999999999999999988753 478999999986 689999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHH
Q 005108 692 SRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~ 708 (714)
+.+.++.|. +.+.|+++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88887654
No 80
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=3.6e-17 Score=139.32 Aligned_cols=96 Identities=25% Similarity=0.326 Sum_probs=86.2
Q ss_pred hhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc---chhhhCCccccceEEEEeCCe
Q 005108 618 LEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP---GVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 618 ~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++|...+.. +++++|+||++||++|+.+.|.++++..+++++.|++||+|+++ +++..|+|.++||+++|++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~ 82 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE 82 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe
Confidence 3456665543 67999999999999999999999999999988999999999875 799999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhhc
Q 005108 693 RMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~~ 713 (714)
.+.++.|...++|++.|.+|+
T Consensus 83 ~v~~~~G~~~~~l~~~~~~~~ 103 (103)
T cd02985 83 KIHEEEGIGPDELIGDVLYYG 103 (103)
T ss_pred EEEEEeCCCHHHHHHHHHhcC
Confidence 999999999999999988775
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=2.6e-14 Score=149.56 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=154.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+.++.+...|..+|..+....+|++|+.+|..|+.++|+|..+|..++.+..++++++-....-.+.+++.|.....|..
T Consensus 69 r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 69 RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 36777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQA-DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
+|..+...|++..|...++...+.. ...........+..+.+.....+.|..++|++.+.+--..--+ ...+....+.
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~ 227 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHH
Confidence 9999999999999999888776622 2333344566667777788888999999998877654332222 2233445899
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCC
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
++++++++++|+..|..++..+|++
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchh
Confidence 9999999999999999999999998
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.70 E-value=2.9e-14 Score=149.19 Aligned_cols=328 Identities=16% Similarity=0.101 Sum_probs=236.1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
-.|.+.+.+...|..+...|+-++|..+...++..|+....+|..+|.++....+|++|+++|+.|+.++|+|...|..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46777888888888888888888998888888888888888888888888888889999999999998888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG---ADFS----PQLS 389 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~---p~~~----~~~~ 389 (714)
+.+..++++++.....-.+.++... ..-..|+..+..+...|++..|+...+...+.. |+.. ....
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~-------~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRP-------SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 8888888888887776666554221 222446666777888899999988887776654 2211 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
......+.+.|.+++|++.+..--..--+. .......+.++++++++++|+..|...+..+|++..
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk--------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQIVDK--------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhHHHHH--------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 335666777888888877766543222222 445567889999999999999999999999999988
Q ss_pred HHHHHHhHHH-H----H---HHHHH--------------HhHHhhCcCHHHHHH--------------------------
Q 005108 470 VAVLLNNVKL-V----A---RARAR--------------GNDLFKSERFTEACQ-------------------------- 501 (714)
Q Consensus 470 ~~~~l~~l~~-~----~---~~~~~--------------g~~~~~~g~~~~A~~-------------------------- 501 (714)
.+..+....- + . .+... +.....-.++.+.+.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 7766543211 0 0 00000 000000001111110
Q ss_pred ---HHHH-------hhcc----C--------CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 502 ---AYGE-------GLRF----D--------PSN--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 502 ---~~~~-------al~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
.+++ .+.- + |.. .+.++.++.-|...|+++.|..+++.|+...|..++.|...|.+
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 1111 1111 0 111 34566788899999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
+...|++++|...++++.++|-.|.-+.
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 9999999999999999999987665554
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=151.23 Aligned_cols=123 Identities=33% Similarity=0.571 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
...++.++..|+-+.+.++|++|+..|.+||+++|.|+.+|+++|.+|.++|+++.|++.++.++.++|.+.++|.+||.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+|..+|++++|++.|+++|+++|++..++..|..+...+++.+
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988887654
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=9.1e-15 Score=158.86 Aligned_cols=322 Identities=13% Similarity=0.038 Sum_probs=253.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
..++...|+..|-+++++++..+.+|..+|..|..-.+...|.++|++|.++|+.+..++-..+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc
Q 005108 334 CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413 (714)
Q Consensus 334 ~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (714)
-.+.+. .+. ......+..++-.|.+.++...|+..|+.++..+|. +...|..+|.+|...|++..|++.|.++.
T Consensus 550 l~~~qk-a~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 550 LRAAQK-APA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHhhh-chH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 444331 111 122344555788888999999999999999999997 46677789999999999999999999999
Q ss_pred cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--------------------------
Q 005108 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN-------------------------- 467 (714)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------- 467 (714)
.++|.+ .+..+..+.+....|+|.+|+..+...+......
T Consensus 624 ~LrP~s--------------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 624 LLRPLS--------------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred hcCcHh--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999998 6677777777777777777777666544321111
Q ss_pred -----------------------HHHHHHHHhH---------------------H-------------------------
Q 005108 468 -----------------------VEVAVLLNNV---------------------K------------------------- 478 (714)
Q Consensus 468 -----------------------~~~~~~l~~l---------------------~------------------------- 478 (714)
...|..+... .
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 0111110000 0
Q ss_pred ----HHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 479 ----LVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 479 ----~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....+.++|..|+. +.+-..|+.++.++++++.++...|..||.+ ...|++.-|..+|-+.+...|.
T Consensus 770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 00113345555444 2233578999999999999999999999988 6668999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
....|.++|.++.+..+++.|...|.++..++|.|...+.....+....+
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999776655544444433
No 85
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.67 E-value=2.5e-16 Score=133.94 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=88.7
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.++|..++...++++|+||++||++|+.+.|.++.+..+++ .+.|+.+|+| .++++++|+|+++||+++|++|+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 45677888888888899999999999999999999999999986 3789999999 78899999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
++.++.|.+.+.|.++|+++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEEEecCChHHHHHHHhhC
Confidence 99999999999999998763
No 86
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.9e-16 Score=146.27 Aligned_cols=102 Identities=35% Similarity=0.595 Sum_probs=94.4
Q ss_pred eeeehhhhHHhhhccCCC--ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.+...|+..+...+ .++|+|++.||++|+.|.|.+..|..+||...|++||||++...|..+||..+|||++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 345667778888776655 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhhc
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
||.+++++.|.+..-|++.|.+|.
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 87
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.65 E-value=3.7e-16 Score=137.33 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=85.6
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEE-EEe
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFK-IYK 689 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~-~~~ 689 (714)
.+.+.+.+.+.+. ..++++++|+++||++|+.+.|.|+++++++++ +.|++||+|+.+++++.|+|++.||++ +||
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 3455667777663 567999999999999999999999999999998 777999999999999999999787665 889
Q ss_pred CCe-EEEEEcC--------C-CHHHHHHHHhhh
Q 005108 690 NGS-RMKEIVC--------P-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~-~~~~~~g--------~-~~~~l~~~~~~~ 712 (714)
+|+ .+.+..| . +.++|.+.|+.+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 999 8999999 5 888888887753
No 88
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.65 E-value=4e-16 Score=130.63 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=80.7
Q ss_pred hHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
..|++.+..++.+++.|++.| |++|+.+.|.++++.++|++ +.|++||+|+.++++..|+|+++||+++|+||+.+.
T Consensus 18 ~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 18 ATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred ccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 455566677889999999997 99999999999999999987 789999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHH
Q 005108 696 EIVCP-SRDMLE 706 (714)
Q Consensus 696 ~~~g~-~~~~l~ 706 (714)
++.|. +.+++.
T Consensus 98 ~~~G~~~~~e~~ 109 (111)
T cd02965 98 VLAGIRDWDEYV 109 (111)
T ss_pred EEeCccCHHHHh
Confidence 99999 887764
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2e-12 Score=134.24 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=234.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD------------------- 306 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 306 (714)
+..+.++|+.++.++|+..++ -.++.+..+....|.+++++|+|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 4566677788999999999999999999999885432
Q ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------CCCh-HHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 307 -----------PN-YWRAHQRLGSLLVRLGQVENARRHLCLSGQ-------QADP-TEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 307 -----------p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~-~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
|. ..+.+++.|.++...|+|.+|++.++++++ ..+. ++....+.-.....++.++...|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 356789999999999999999999999922 2222 233333334456778888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH------------------------------------------------HHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQ------------------------------------------------LSMCRVEALLK 398 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~------------------------------------------------~~~~la~~~~~ 398 (714)
.++|...|...++.++...+. ++.+.+.+.+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887643311 12223333333
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH-HHHHHHhH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE-VAVLLNNV 477 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~l 477 (714)
.+.-+.+.+.........|.. ...+. .+.....+...+.+|++++....+-+|.+.. +...
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~-------------~~~~l-l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~---- 381 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPES-------------LFPIL-LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL---- 381 (652)
T ss_pred hhhHHHHHHHHHhCCccCchH-------------HHHHH-HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH----
Confidence 444444444444444444433 01122 2222333333788999999999998888833 3332
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHH--------HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYG--------EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------ 543 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 543 (714)
++...+.+|+++.|++.+. ..++.. ..+.+-..+-..|++.++-+-|...+.+++.-
T Consensus 382 --------~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 382 --------RAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred --------HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 4888999999999999998 333332 23555566666777777766666666666652
Q ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 005108 544 -QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM 606 (714)
Q Consensus 544 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~ 606 (714)
.+..-..+..++....+.|+-++|...++++++.+|++.++.-.+.-++..+...+.+++.+.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 222234455667777888999999999999999999999999999888888877766665543
No 90
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.65 E-value=5.7e-16 Score=133.75 Aligned_cols=91 Identities=27% Similarity=0.456 Sum_probs=85.2
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
|.+..+.+.++|.+.+...+.++|+||++||++|+.+.|.++++..+++++.|++||+++.++++++|+|..+||+++|+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 35667778788999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCC
Q 005108 690 NGSRMKEIVCP 700 (714)
Q Consensus 690 ~G~~~~~~~g~ 700 (714)
+|+.+.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999998776
No 91
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.64 E-value=1.7e-15 Score=141.07 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=89.4
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+...+.|...+... .++||+||++||++|+.+.|.|..|+.+|+.+.|++||+++. .++..|+|+.+|||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTll 140 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALL 140 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEE
Confidence 4667777767777777543 389999999999999999999999999999999999999987 899999999999999
Q ss_pred EEeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ +.+.|+.+|.+++
T Consensus 141 lyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 141 VYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred EEECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 99999999999876 3477777777653
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=2.9e-13 Score=146.36 Aligned_cols=315 Identities=17% Similarity=0.103 Sum_probs=225.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
..+.+.....++...|++++|++++++....-.+...++-.+|.++..+|++++|...|...|+.+|++...|..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34677788899999999999999999998888889999999999999999999999999999999999999999999888
Q ss_pred HHcC-----CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 321 VRLG-----QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKS-ALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 321 ~~~g-----~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~-Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
.... +.+.-...|++.....+..... ..+... +..-..+.. +..++...+..+ .+.++..+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~------~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk~ 151 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP--RRLPLD------FLEGDEFKERLDEYLRPQLRKG---VPSLFSNLKP 151 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch--hHhhcc------cCCHHHHHHHHHHHHHHHHhcC---CchHHHHHHH
Confidence 4443 4556666676654422211110 000000 111112322 233444455443 4455555555
Q ss_pred HHHHcCCHHHHHHHhhccc---cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIP---KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+|....+.+-...++.... +....................++++.+++.|...|++++|+++++++++..|..++.+
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 5554433333333333222 1110000000000000111245779999999999999999999999999999999988
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CC--
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP--NY-- 547 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-- 547 (714)
+.. |.++...|++++|.++++.+-.++..|-.+....+..+.+.|+.++|.+.+..-.+.+- ..
T Consensus 232 ~~K------------arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 232 MTK------------ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HHH------------HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 765 99999999999999999999999999999999999999999999999999988765442 11
Q ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 548 -----TKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 548 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+.....|.+|.+.|++..|++.|..+.+..
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2344667999999999999999999887753
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=5.1e-15 Score=134.36 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=120.1
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
..+|+++++++|++ +.. +|.++...|++++|+.+|++++.++|.+..+|+.+|.++..+|++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~------------~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 77 (144)
T PRK15359 13 EDILKQLLSVDPET---VYA------------SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTA 77 (144)
T ss_pred HHHHHHHHHcCHHH---HHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 46789999999985 222 389999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|++++.+..+..++..+..
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888877653
No 94
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.64 E-value=1.3e-15 Score=131.15 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=84.8
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCcc--cc--ccchHHHHHHhhC--C-CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLH--CK--QISPYVETLCGRY--P-SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~--C~--~~~p~l~~l~~~~--~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+.++|.+.+.. ..++|++||+.||++ |+ ++.|.+.++.+++ . ++.|++||+|+.++||++|+|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 34777776544 568889999999988 99 9999999999998 5 599999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+||+++. +.|. +.+.|.++|+++
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 9999987 9999 999999999875
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.63 E-value=2.2e-14 Score=155.93 Aligned_cols=324 Identities=13% Similarity=0.046 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..|..+|-.|.+.+++..|+..|+.+++.+|++..+|..+|.+|...|+|..|++.|.++..++|.+....+..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 45566888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-------DFSPQLSMCRVEA 395 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-------~~~~~~~~~la~~ 395 (714)
+|+|.+|+..+...+..............+.++..+..+...|-+.+|..++++.++... ......|..++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 999999999998888755555555566677777777778877877777777777765411 1122222222222
Q ss_pred H---HHcC--CH----HHHHHH-hhccccCCCCCCCc----hhhhhhhhhhhHHHHHHHHHHHHH--------hCcHHHH
Q 005108 396 L---LKLH--QL----EDAESS-LSNIPKIEPSTVSS----SQTRFFGMLSEAYTFFVRAQIEMA--------LGRFENA 453 (714)
Q Consensus 396 ~---~~~g--~~----~~A~~~-~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A 453 (714)
. .... -. -.++.- ++.......++.-. ........+...+.|+++|..|+. +.+...|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 1 1111 00 000000 11111111111000 001111222336679999988877 2345689
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
+.++++++++..++...|..+ |.+ ...|++.-|.-+|-+.+..+|.....|.|+|.++.+..+++.|
T Consensus 803 i~c~KkaV~L~ann~~~WnaL------------GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNAL------------GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHH------------HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 999999999999999999987 666 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
...|.++..++|.+...|...+.+....|+.-++...|....++.-
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 9999999999999999999999999999999999999988555443
No 96
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.9e-16 Score=148.84 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=82.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
..+++|+||++||++|+++.|.|+++..+|.+ +.+++||+|+.+.++.+|||++|||++.|++|++|+.+.|. ..++|
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 34899999999999999999999999999976 99999999999999999999999999999999999999999 88899
Q ss_pred HHHHhhhc
Q 005108 706 EHSVRHYS 713 (714)
Q Consensus 706 ~~~~~~~~ 713 (714)
++||+++.
T Consensus 123 r~~ld~~~ 130 (304)
T COG3118 123 RQFLDKVL 130 (304)
T ss_pred HHHHHHhc
Confidence 99999874
No 97
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.62 E-value=1.9e-15 Score=131.16 Aligned_cols=89 Identities=31% Similarity=0.577 Sum_probs=79.8
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.. ++|...+... .+++|+||++||++|+.+.|.++++..+++++.|++||+++. +++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 35566666 6777766544 789999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCeEEEEEcCC
Q 005108 687 IYKNGSRMKEIVCP 700 (714)
Q Consensus 687 ~~~~G~~~~~~~g~ 700 (714)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.1e-12 Score=131.29 Aligned_cols=315 Identities=15% Similarity=0.033 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..++.--+.+...++|++|+....+++...|++..+......+++++++|++|+...++-....-. ....+..|.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 344444455556666666666666666666666666666666666666666666333322211111 1112455666666
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc----------------------
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA---------------------- 380 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~---------------------- 380 (714)
+++.++|+..++ .++..+.. ...-.+.+++++++|++|+..|+..++.
T Consensus 92 lnk~Dealk~~~-~~~~~~~~---------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLK-GLDRLDDK---------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred cccHHHHHHHHh-cccccchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 666666666655 22222211 1112334455566666666666555432
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 381 --------GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 381 --------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
.|....+.+++.|.++...|+|.+|++.+++++++. .++.. ..... ....-+...++.++..+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--eEeie--~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--EEEIE--EELNPIRVQLAYVLQLQ 237 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--hhhHH--HHHHHHHHHHHHHHHHh
Confidence 344456778889999999999999999999993321 11100 01111 12244677889999999
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHH-HHhHH------------------------------------HHHHHHHHHhHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVL-LNNVK------------------------------------LVARARARGNDL 490 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~-l~~l~------------------------------------~~~~~~~~g~~~ 490 (714)
|+.++|...|...++.++.+...... .+|+- .-.-+.+.+...
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766532222 22210 001123445555
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-TKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~ 569 (714)
+..+.-+.+.+.....-...|....--........+...+.+|++.+....+-+|.. ..+.+.++.+...+|+++.|++
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555555555444333444433222333333344447899999999999989987 6788899999999999999999
Q ss_pred HHH
Q 005108 570 DFE 572 (714)
Q Consensus 570 ~~~ 572 (714)
.+.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=6.3e-14 Score=139.73 Aligned_cols=177 Identities=18% Similarity=0.163 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
.....++.+|..+...|++++|+..|++++..+|.++ ....+++.+|.++...|++++|+..|+++++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-----------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3466777899999999999999999999999998862 11357899999999999999999999999999
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhC--------cCHHHHHHHHHHhhccCCCCHHHH-----------------H
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKS--------ERFTEACQAYGEGLRFDPSNSVLY-----------------C 518 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~ 518 (714)
.|+++.....+. .+|.+++.. |++++|++.|+++++.+|++...+ .
T Consensus 100 ~p~~~~~~~a~~---------~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 100 HPNHPDADYAYY---------LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred CcCCCchHHHHH---------HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 998876422221 126666655 899999999999999999985432 4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|.+|.+.|++++|+..|+++++..|+. .++++.+|.++.++|++++|+.+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 67889999999999999999999997764 589999999999999999999999988877663
No 100
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.59 E-value=3.3e-15 Score=124.75 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=74.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE---------E
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK---------E 696 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~ 696 (714)
..+++|++|+++||++|+.+.|.+++++.++++ +.|++||+|+.+++++.|+|..+||+++|+||+.+. +
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k 92 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTK 92 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcE
Confidence 467999999999999999999999999999998 999999999999999999999999999999998874 3
Q ss_pred EcCC--CHHHHHHHHhh
Q 005108 697 IVCP--SRDMLEHSVRH 711 (714)
Q Consensus 697 ~~g~--~~~~l~~~~~~ 711 (714)
+.+. +++++.+.|+-
T Consensus 93 ~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 93 FVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEcCchhHHHHHHHH
Confidence 3333 55666665543
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=1.9e-14 Score=130.66 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=118.2
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
...|+++++++|++ ++.+|.++...|++++|+.+|++++.++|.+..++..+
T Consensus 13 ~~~~~~al~~~p~~-----------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l----------- 64 (144)
T PRK15359 13 EDILKQLLSVDPET-----------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIAL----------- 64 (144)
T ss_pred HHHHHHHHHcCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH-----------
Confidence 45677888888775 56789999999999999999999999999999999876
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+++..+..++.+...++
T Consensus 65 -g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 65 -AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876543
No 102
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.1e-11 Score=123.64 Aligned_cols=297 Identities=15% Similarity=0.076 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-YWRAHQRLGSLL 320 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~ 320 (714)
+......|..-+..|+|.+|.+...++-+..+.-..++..-+.+--++|+++.|-.++.++-+..++ .......++.++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4556667888889999999999999988888777778888889999999999999999999998444 466788899999
Q ss_pred HHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005108 321 VRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL-- 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~-- 396 (714)
...|+++.|.....++.. +..+... .-...+|...|+|.+.+.++.++-+.+--.++++....-.++
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vl---------rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVL---------RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHH---------HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 999999999999988876 2222221 222345888999999999999988876544443322211111
Q ss_pred --HHcCCH---HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 397 --LKLHQL---EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 397 --~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+..+- +.-..+++.....-..+ ..+...++.-+...|+.++|.+..+.+++..-+.. ..
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~--------------p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~ 299 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRND--------------PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC 299 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcC--------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH
Confidence 122222 22223444443333333 45667788889999999999999999998765544 21
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.. .-...-++...=++..++.++..|+++.++..+|..|.+.+.|.+|..+|+.+++..|+ ...+
T Consensus 300 ~~--------------~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~ 364 (400)
T COG3071 300 RL--------------IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDY 364 (400)
T ss_pred HH--------------HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhH
Confidence 11 12456788999999999999999999999999999999999999999999999999887 5678
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 552 LRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 552 ~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|.++.++|+..+|.+.+++++-+
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 89999999999999999999998854
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=1.6e-13 Score=131.39 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=120.2
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHH-H
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACW-F 525 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 525 (714)
.++.++++..++++++.+|++.+.|..+ |.+|...|++++|+..|+++++++|+++.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~L------------g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999987 99999999999999999999999999999999999975 6
Q ss_pred HhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 526 KLGQ--WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 526 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..|+ +++|++.++++++.+|++..+++.+|.++.+.|++++|+.+|+++++++|.+.+-...+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7787 59999999999999999999999999999999999999999999999998776555444
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.58 E-value=3.8e-14 Score=140.26 Aligned_cols=326 Identities=15% Similarity=0.095 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCcHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNYWR 311 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 311 (714)
-..+...|.-+++.|++...+.+|+.|++...++ ..+|..+|.+|+.+++|++|+++-..=+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3456678999999999999999999999998777 467888999999999999999875433221 223356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
.--+||..+-.+|.|++|+.+..+-+... ...-..+....++++++.+|...|+.-....--++ + .+..++
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~a-reLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~----g-~f~~ev--- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFA-RELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK----G-AFNAEV--- 167 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHH-HHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc----c-cccHHH---
Confidence 67789999999999999998775543200 00011122223333333333333321100000000 0 000000
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
...++.|.++|..-+++-.. +.+......++-++|..|+.+|+|+.|+..-+.-+.+.....+-
T Consensus 168 -------~~al~~Av~fy~eNL~l~~~--------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr- 231 (639)
T KOG1130|consen 168 -------TSALENAVKFYMENLELSEK--------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR- 231 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH--------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-
Confidence 00134455555444433222 23333445678889999999999999999988777654332211
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----CC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----DP--SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
...-..+.++|+++.-.|+++.|+++|++.+.+ .. ..+...+.||..|.-..++++||.++++-+.+..
T Consensus 232 -----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 232 -----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred -----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122335699999999999999999987654 22 2356778899999999999999999998776532
Q ss_pred ------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhhh
Q 005108 546 ------NYTKALLRRAASNSKLEKWADAVRDFEVLRREL-----PD-DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 546 ------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~L~~~~~~l~~ 597 (714)
....+++.||.+|-.+|..++|+.+.++.+++. +. ....+..|......++.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 245889999999999999999999998887652 21 22344555555444443
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.58 E-value=6.5e-15 Score=126.13 Aligned_cols=96 Identities=28% Similarity=0.419 Sum_probs=89.4
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.|...+.. .+.++|.|+++||++|+.+.|.+.++...++ ++.|+.||+++...+++.|+|.++||+++|++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 34567777765 7899999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|.++|+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 999999 999999999875
No 106
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.57 E-value=6.1e-15 Score=126.25 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=81.4
Q ss_pred hhHHhhh---ccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchh-hhCCccccceEEEEeCCe
Q 005108 618 LEQFRAA---VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVA-HAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 618 ~e~~~~~---i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~-~~~~v~~~Pt~~~~~~G~ 692 (714)
.++|.++ +....+++|.||++||++|+.+.|.++++.+.+.+ +.|++||+++.+.++ +.|+|.++||+++|++|+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 3456654 56788999999999999999999999999999876 889999999999999 589999999999999999
Q ss_pred EEEEEcCC-CHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~ 708 (714)
...++.|. +.+.|..+
T Consensus 96 ~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 96 GPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cceEEeCCCCHHHHHhh
Confidence 99999999 88888765
No 107
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.9e-11 Score=123.44 Aligned_cols=353 Identities=14% Similarity=0.031 Sum_probs=254.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+...|...|+--..+++++.|...|++||..+-.+...|...+.+-++..+...|...+++|+.+-|.-...|+.+..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 66888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHH------------------------HHHHhHHHHHcCCHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEK------------------------HLSKCTDARKVGDWKSALREGD 375 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~------------------------~~~~a~~~~~~g~~~~Al~~~~ 375 (714)
..+|+...|.+.|++.+. .++...+......+. ++.-+.--.+.|+..-|...|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999988 666666654443332 3333444457788888889999
Q ss_pred HHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchh-----------------------------
Q 005108 376 AAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ----------------------------- 424 (714)
Q Consensus 376 ~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------------------- 424 (714)
+++..-.+. ...++...|..-..+..++.|.-+|+-+++.-|.+-....
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 888764432 2334445566666778888999889888888777621110
Q ss_pred -hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHHHHH-HhHHhhCcCHHHHH
Q 005108 425 -TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARARAR-GNDLFKSERFTEAC 500 (714)
Q Consensus 425 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~~~~-g~~~~~~g~~~~A~ 500 (714)
..+...-.+..+|+..-.+....|+.+.-.+.|++|+..-|-..+ .|.-+.-+ +.+. -..-....+.+.+.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL-----WinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL-----WINYALYEELEAEDVERTR 386 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH-----HHHHHHHHHHHhhhHHHHH
Confidence 001111123456777777777778888888888888876665322 11111000 0000 11223456777888
Q ss_pred HHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 501 QAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 501 ~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+.|+.+|++-|.. +.+|...|....++.+...|.+.+-.|+-..|.+ ..+-....+-.++++++.....|++.++
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877764 5677777777777777777777777777777764 4455555666677777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhc
Q 005108 577 ELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
..|.+-.++...+.....|+..+
T Consensus 466 ~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHH
Confidence 77777777777776666666543
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4e-12 Score=123.86 Aligned_cols=327 Identities=14% Similarity=0.088 Sum_probs=198.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNA-AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
++...+|..|+.+++-.+..+.... ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+||.+++.+|+|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4456667777777766665443332 455566777777777777777777766655556667777777777777777776
Q ss_pred HHHHhhcCCC--------------ChHHHH-----HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 331 RHLCLSGQQA--------------DPTEVH-----RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 331 ~~~~~al~~~--------------~~~~~~-----~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
..-.++-+.+ +...+. .-...+..+.++.+.+..-.|++|++.|.+++.-+|+. ..+-..
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVY 190 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHH
Confidence 6665553311 111111 11234566777888888889999999999999988874 344455
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-cCCCCHH-
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-IDPRNVE- 469 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~- 469 (714)
+|.||.++.-++-+.+.+.-.+...|+. ..+...++..++++=+-..|....+.... .+...+.
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdS--------------tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDS--------------TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCc--------------HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 8999999999999999999999999987 44555555555553222222222222111 1111111
Q ss_pred ----------------HHHHHHhH-H-HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC--
Q 005108 470 ----------------VAVLLNNV-K-LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ-- 529 (714)
Q Consensus 470 ----------------~~~~l~~l-~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 529 (714)
++..+-.+ + ..+.-.++...|.++++.++|+.+++. ++|..+.-|...|.++..+|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhc
Confidence 11111000 0 112223557778899999999988764 567666666666666665554
Q ss_pred -----------------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 530 -----------------------------------------WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 530 -----------------------------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+++.+.+++..-...-++....+++|+++...|++.+|.
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 334333333333333444556678888888888888888
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Q 005108 569 RDFEVLRREL-PDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 569 ~~~~~al~~~-p~~~~~~~~L~~~~~~l~ 596 (714)
+.|-+.-..+ .++-.....|++++..-+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 8877664433 223334455666665543
No 109
>PTZ00051 thioredoxin; Provisional
Probab=99.57 E-value=9e-15 Score=123.88 Aligned_cols=95 Identities=33% Similarity=0.567 Sum_probs=87.3
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++.+.+.+..++.....++++||++||++|+.+.|.++++..+++++.|+.+|+++...++..|+|+++||+++|++|+
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 34566678888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHH
Q 005108 693 RMKEIVCPSRDMLEH 707 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~ 707 (714)
++.++.|...++|++
T Consensus 83 ~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 83 VVDTLLGANDEALKQ 97 (98)
T ss_pred EEEEEeCCCHHHhhc
Confidence 999999998787764
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.57 E-value=4.6e-13 Score=150.74 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..+|.||.++|+.++|...|+++++.+|++ +.++.++|..|... +.++|++++.+|+..
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDN--------------PEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCccc--------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 335555555555555555555555555555 55555555555555 555555555555432
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC--------------------HHHHHHHHHHHHHhCC
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN--------------------SVLYCNRAACWFKLGQ 529 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~~~~~la~~~~~~g~ 529 (714)
++..++|.++.+++.+.+..+|++ ..++.-+=.+|.+.++
T Consensus 179 --------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 179 --------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred --------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 222334444444444444444443 2333344467778888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
|++++..++.+++++|.+..+...++.+|. ++|.. ...|+.+++
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 888888888888888888888888888887 33333 444444444
No 111
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.56 E-value=1e-14 Score=126.02 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=80.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
...+++|+||++||++|+.+.|.++++..+++ ++.|++||++..+.++++++|+++||+++|++|+.+.++.|. +.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~ 102 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQ 102 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHH
Confidence 46799999999999999999999999999985 588999999999999999999999999999999999999998 999
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.|.++|+++
T Consensus 103 ~l~~~i~~~ 111 (111)
T cd02963 103 HVVDFVRKL 111 (111)
T ss_pred HHHHHHhcC
Confidence 999999864
No 112
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.56 E-value=9.6e-15 Score=123.14 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.++++++||++||++|+.+.|.++++...+++ +.|+.||++...++++.|+|.++||+++|++|+.+.++.|. +.+.|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHH
Confidence 56999999999999999999999999999865 88999999999999999999999999999999999999999 89999
Q ss_pred HHHHh
Q 005108 706 EHSVR 710 (714)
Q Consensus 706 ~~~~~ 710 (714)
+++|+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 98874
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=4.7e-13 Score=133.44 Aligned_cols=181 Identities=20% Similarity=0.117 Sum_probs=152.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH--
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA---AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR-- 311 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 311 (714)
..+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++.+|++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566889999999999999999999999999999999875 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHhhcCC-C-ChHHHHHHHHH--------HHHHHHhHHHHHcCCHHHHHH
Q 005108 312 -AHQRLGSLLVRL--------GQVENARRHLCLSGQQ-A-DPTEVHRLQVV--------EKHLSKCTDARKVGDWKSALR 372 (714)
Q Consensus 312 -a~~~la~~~~~~--------g~~~~A~~~~~~al~~-~-~~~~~~~l~~~--------~~~~~~a~~~~~~g~~~~Al~ 372 (714)
+++.+|.++... |++++|++.|++++.. + .......+..+ ...+..+..+...|++++|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 799999999887 8899999999999872 2 22222111111 123467788999999999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 373 EGDAAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 373 ~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
.|++++...|+. ....+..++.++..+|++++|..+++.+....|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999998863 457788899999999999999999988776654
No 114
>PRK10996 thioredoxin 2; Provisional
Probab=99.55 E-value=1.5e-14 Score=130.10 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=88.6
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|..++..+++++|+||++||++|+.+.|.+.++..++. ++.|++||+++.++++++|+|.++||+++|++|+++.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 456778888778899999999999999999999999998875 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 999999999874
No 115
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.55 E-value=7.5e-15 Score=123.88 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDM 704 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~ 704 (714)
.+++++|+||++||++|+.+.|.++++..+++++.|+.||.+ +.+.++++|+|.++||+++|++| .+.++.|. +.+.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~ 95 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDS 95 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHH
Confidence 356899999999999999999999999999999999999999 78999999999999999999999 88899999 9999
Q ss_pred HHHHH
Q 005108 705 LEHSV 709 (714)
Q Consensus 705 l~~~~ 709 (714)
|.++|
T Consensus 96 l~~f~ 100 (100)
T cd02999 96 LAAFY 100 (100)
T ss_pred HHhhC
Confidence 88775
No 116
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.55 E-value=9.7e-15 Score=124.30 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
.+.|...+...++++|.||++||++|+.+.|.++++..++.+ +.|++||+++.+.++++|+|+++||+++|++|+.+.+
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEK 87 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCccc
Confidence 456777777778999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHH
Q 005108 697 IVCP-SRDMLEHS 708 (714)
Q Consensus 697 ~~g~-~~~~l~~~ 708 (714)
+.|. +.+.|.++
T Consensus 88 ~~G~~~~~~l~~f 100 (101)
T cd03003 88 YYGDRSKESLVKF 100 (101)
T ss_pred CCCCCCHHHHHhh
Confidence 9998 88887764
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=2.2e-13 Score=123.06 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=119.9
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
+.|++++..+|++......+ |..++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999998776655 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.+|+++++.+|++...++.+|.+|...|++++|+..|+++++++|++.........+...+
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887777665544
No 118
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.53 E-value=2.4e-14 Score=120.99 Aligned_cols=92 Identities=26% Similarity=0.496 Sum_probs=82.8
Q ss_pred hHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhh-CCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGR-YPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+++...+... ..+++.||++||++|+.+.|.++++..+ ++++.|+++|.++.++++..|+|.++||+++|++|+++.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4555656554 7999999999999999999999999998 567999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHh
Q 005108 696 EIVCPSRDMLEHSVR 710 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~ 710 (714)
++.|.+.++|.+.|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999998888888763
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.53 E-value=1.1e-13 Score=130.48 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=83.8
Q ss_pred cceeeehhhhHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
|.+..++..+.+..+.... ..+||+||++||++|+.+.|.|++|+.+|+.+.|++||++.. +..|+|..+|||++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEE
Confidence 4666676644444444333 479999999999999999999999999999999999999864 67899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|+||+.+.+++|+ +.+.|+..|.+++
T Consensus 159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred EECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 9999999999885 5678888777653
No 120
>PRK09381 trxA thioredoxin; Provisional
Probab=99.53 E-value=5.8e-14 Score=121.40 Aligned_cols=99 Identities=24% Similarity=0.446 Sum_probs=87.0
Q ss_pred eeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.. +.|.. ++...++++++||++||++|+.+.|.++++..++++ +.|+.+|++..+.+++.|+|+.+||+++|++
T Consensus 6 ~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (109)
T PRK09381 6 IHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 84 (109)
T ss_pred eeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeC
Confidence 34433 34554 455577999999999999999999999999999964 8899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+.+.++.|. +.+.|+.+|+.+
T Consensus 85 G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 85 GEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CeEEEEecCCCCHHHHHHHHHHh
Confidence 9999999999 999999999875
No 121
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.52 E-value=1.2e-11 Score=131.76 Aligned_cols=278 Identities=13% Similarity=-0.038 Sum_probs=194.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhcCCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI----GEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+..+..+..+..++..|++++|+..++++++.+|++..++.. +..+..+|++ ..+.+.+......+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 456778889999999999999999999999999999887775 5555555544 44444444433567777888889
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS---PQLSMCR 392 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~l 392 (714)
+|.++..+|++++|+..+++++...+.. ...+..++.++...|++++|+..+++++...|... ...+..+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 9999999999999999999998833322 23456677889999999999999999999876422 2345569
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHH---HHHHhccCCCCHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA---AEKAGQIDPRNVE 469 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---~~~al~~~p~~~~ 469 (714)
+.++...|++++|+..|++++...+.... .........+...+...|..+.+... ........+....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDP---------ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCCh---------HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999776663210 00000010222233333432222222 1111111122111
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS---------NSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
....+ ..+.++...|+.++|...++.+...... ...+....+.++...|++++|++.+..+
T Consensus 264 ~~~~~----------~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 264 AFNDL----------HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred hHHHH----------HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 3488889999999999999877653322 3566778899999999999999999999
Q ss_pred HHhC
Q 005108 541 LLIQ 544 (714)
Q Consensus 541 l~~~ 544 (714)
+.+-
T Consensus 334 l~~a 337 (355)
T cd05804 334 RDDL 337 (355)
T ss_pred HHHH
Confidence 8753
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.51 E-value=5.4e-13 Score=134.98 Aligned_cols=264 Identities=17% Similarity=0.155 Sum_probs=181.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
+.+|-.|+|..++..++ ....++. .......+.++++.+|+++..+...... .+....+...++..+....+.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 45667788888887776 2222322 3456677788888888887766554331 22234455555555444344445
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
++..++..+.... ....+.+....|.++...|++++|++.
T Consensus 85 ~l~~l~~~~~~~~----------------------------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~ 124 (290)
T PF04733_consen 85 ALEELKELLADQA----------------------------------------GESNEIVQLLAATILFHEGDYEEALKL 124 (290)
T ss_dssp HHHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCC
T ss_pred HHHHHHHHHHhcc----------------------------------------ccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5444443332111 111223344467888888999999988
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHh
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~ 488 (714)
+.+. .+ ........++++.+++++.|.+.++.+.+.+.+..-..... ++
T Consensus 125 l~~~-----~~--------------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~------------aw 173 (290)
T PF04733_consen 125 LHKG-----GS--------------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAE------------AW 173 (290)
T ss_dssp CTTT-----TC--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH------------HH
T ss_pred HHcc-----Cc--------------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH------------HH
Confidence 8764 33 45666778899999999999999999988877654333222 44
Q ss_pred HHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-H
Q 005108 489 DLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW-A 565 (714)
Q Consensus 489 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~ 565 (714)
+.+..| ++++|...|++..+..+.++.+++.++.|++.+|+|++|.+.++++++.+|++++++.+++.+...+|+. +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 444444 6999999999998888889999999999999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Q 005108 566 DAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.+.+++.++...+|+++-+...-
T Consensus 254 ~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHH
Confidence 67789999999999988766543
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=2.8e-12 Score=143.86 Aligned_cols=137 Identities=13% Similarity=0.043 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..+++.+|.+....|++++|..+++.++++.|++..++..+ +.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------------a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------------LRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 77899999999999999999999999999999999998876 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+..++.+|.++.++|++++|++.|++++..+|++..++..+|.++..+|+.++|...|+++++....-.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999999999999999999999999999999999999999999999999999999999998765443
No 124
>PTZ00062 glutaredoxin; Provisional
Probab=99.50 E-value=6.6e-14 Score=132.08 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=81.2
Q ss_pred hhhHHhhhccCC-CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLP-GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~-~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+++...+..+ +.++++||++||++|+.+.|.+.+|.++||++.|+.||.| |+|.++|||++|++|+.++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 446677766654 8899999999999999999999999999999999999988 8999999999999999999
Q ss_pred EEcCCCHHHHHHHHhhhc
Q 005108 696 EIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~~~~ 713 (714)
|+.|.+..+|...|+++.
T Consensus 77 r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 77 SLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred eeeCCCHHHHHHHHHHHc
Confidence 999999999999998764
No 125
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.50 E-value=4.8e-14 Score=120.78 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+.|...+ ...++++|+||++||++|+.+.|.++++..++.+ +.|++||+++.+++++.|+|+++||+++|++| +.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 34666654 4456899999999999999999999999999854 89999999999999999999999999999988 999
Q ss_pred EEEcCC-C-HHHHHHHH
Q 005108 695 KEIVCP-S-RDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~-~~~l~~~~ 709 (714)
.++.|. + .+.|..+|
T Consensus 88 ~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 88 HSYNGWHRDADSILEFI 104 (104)
T ss_pred eEccCCCCCHHHHHhhC
Confidence 999998 7 88888764
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=7.2e-12 Score=117.35 Aligned_cols=185 Identities=17% Similarity=0.077 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP 465 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 465 (714)
..++-....+.+..|+.+.|..+++++....|.+ ..+....|..+...|++++|+++|+..++-+|
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S--------------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp 117 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS--------------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDP 117 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCc
Confidence 4455567888899999999999999999888988 66777889999999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
.+...+..- -.+...+|+--+||+.+.+.++..+.|.++|..++.+|...|+|++|.-+|++++-++|
T Consensus 118 t~~v~~KRK------------lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 118 TDTVIRKRK------------LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred chhHHHHHH------------HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 998776532 45567788888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 546 NYTKALLRRAASNSKLE---KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.++..+.++|.+++-+| +++-|.++|.++++++|.+...+..+..+-..+-
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999998776 6788999999999999977777666665555544
No 127
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=3.4e-11 Score=144.60 Aligned_cols=325 Identities=14% Similarity=0.038 Sum_probs=236.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-- 309 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 309 (714)
++......+..++..|++++|...+.++....+. ...+...++.++...|++++|...++++++..+..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3445567788888999999999999998765321 13455567888999999999999999999854432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 005108 310 ---WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD--- 383 (714)
Q Consensus 310 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~--- 383 (714)
..++..+|.++...|++++|...+++++....... ...........++.++...|++++|...+++++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 24567889999999999999999999875211110 01112334567788899999999999999998876221
Q ss_pred --C--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 384 --F--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 384 --~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
. ....+..++.++...|++++|...+.+++........ ......+..++.++...|++++|...+++
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---------QQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 1233456788999999999999999999876443210 01245667789999999999999999999
Q ss_pred HhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHH
Q 005108 460 AGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 460 al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 532 (714)
+..+..... ....... ......+...|+.++|..++.......+... ..+..++.++...|++++
T Consensus 638 a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 638 LENLLGNGRYHSDWIANAD--------KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHhcccccHhHhhHHH--------HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 976533221 1111000 0113445568999999999887665432222 225678999999999999
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 533 SVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 533 A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|+..+++++... .....++..+|.++...|+.++|...+.+++++......
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999998852 223467889999999999999999999999998865543
No 128
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.50 E-value=5.9e-14 Score=126.52 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=82.2
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccC--cchhhhCCccccceEEEE-eCCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDES--PGVAHAENVRIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~-~~G~~~~ 695 (714)
++..++...++++|+||++||++|+.+.|.+.++..++.+ +.|+.||++.. ..++..|+|.++||++|| ++|+++.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 4555666778999999999999999999999999999864 78999988864 478999999999999999 6999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+..|+++
T Consensus 92 ~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 92 QSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 99999 889999998875
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=2.4e-12 Score=123.34 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=130.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
...|...|+++......++... |. .-+...++.++++..++++++.+|++ ...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~----------~~~~~~~~~~~~i~~l~~~L~~~P~~--------------~~~w 76 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL----------HQFASQQTPEAQLQALQDKIRANPQN--------------SEQW 76 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc----------ccccCchhHHHHHHHHHHHHHHCCCC--------------HHHH
Confidence 3457888998886555432211 11 01223677899999999999999999 8899
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH-hhCcC--HHHHHHHHHHhhccCCCCH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL-FKSER--FTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~-~~~g~--~~~A~~~~~~al~~~p~~~ 514 (714)
..+|.+|...|++++|+..|+++++++|++..++..+ |.++ ...|+ +++|++.++++++.+|++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l------------A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL------------ATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999877 8864 67777 5999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+++++|.++.+.|++++|+.+|++++++.|.+.
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999988765
No 130
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.49 E-value=9.3e-14 Score=125.21 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=73.8
Q ss_pred hhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccc------cceEEE
Q 005108 618 LEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRI------VPTFKI 687 (714)
Q Consensus 618 ~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~------~Pt~~~ 687 (714)
.++|.+.+.. ..+++|+||++||++|+.+.|.++++..++. ++.|++||+++.++++++|+|.. +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 3567776632 4589999999999999999999999999885 49999999999999999999988 999999
Q ss_pred EeCCeEEEEEcC
Q 005108 688 YKNGSRMKEIVC 699 (714)
Q Consensus 688 ~~~G~~~~~~~g 699 (714)
|++|+++.++.|
T Consensus 115 f~~Gk~v~r~~G 126 (152)
T cd02962 115 FQGGKEVARRPY 126 (152)
T ss_pred EECCEEEEEEec
Confidence 999999999997
No 131
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.49 E-value=1e-13 Score=119.76 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=81.0
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE--EEc
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK--EIV 698 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~--~~~ 698 (714)
+.+.+..+..+++.||++||++|+.+.|.++++..+++.+.|.++|+++.++++.+|+|+++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 445555666788999999999999999999999998877999999999999999999999999999999987665 778
Q ss_pred CC-CHHHHHHHHhhh
Q 005108 699 CP-SRDMLEHSVRHY 712 (714)
Q Consensus 699 g~-~~~~l~~~~~~~ 712 (714)
|. +.+++.++|+.+
T Consensus 95 G~~~~~el~~~i~~i 109 (113)
T cd02975 95 GLPAGYEFASLIEDI 109 (113)
T ss_pred ecCchHHHHHHHHHH
Confidence 88 888999998764
No 132
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.47 E-value=9.8e-14 Score=119.65 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=80.5
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----C---CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----P---SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.|...+...+.++|.||++||++|+.+.|.++++...+ + .+.|++||+++..+++++|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~ 87 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRN 87 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeC
Confidence 4677777777788999999999999999999999988764 2 37899999999999999999999999999999
Q ss_pred CeE-EEEEcCC-CHHHHHHHH
Q 005108 691 GSR-MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 691 G~~-~~~~~g~-~~~~l~~~~ 709 (714)
|++ ..++.|. +.+.|.++|
T Consensus 88 g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 88 GMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCcceecCCCCCHHHHHhhC
Confidence 995 4677788 888888765
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=5.3e-12 Score=142.26 Aligned_cols=243 Identities=8% Similarity=-0.025 Sum_probs=187.7
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.......|.+..++..++..+...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|.-. .++...+.+
T Consensus 19 ~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 19 TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 334445578899999999999999999999999999999999999999999999999999998887766 666554443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
... ...-..+..++++-. .-.+++.+|.+|.++|++++|...|+++++.+|+ ++.+.
T Consensus 97 ~~~-~~ve~~~~~i~~~~~---------------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aL 153 (906)
T PRK14720 97 LKW-AIVEHICDKILLYGE---------------------NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIV 153 (906)
T ss_pred cch-hHHHHHHHHHHhhhh---------------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHH
Confidence 211 111111111111111 1125677888899999999999999999999987 56777
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.++|..|... ++++|++++.+++.. +...++|.++.+++.+.+..+|++.+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~----------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR----------------------------FIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH----------------------------HHhhhcchHHHHHHHHHHhcCcccch
Confidence 7899999999 999999999888642 45567899999999999999999888
Q ss_pred HHHHHHhH--------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 470 VAVLLNNV--------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 470 ~~~~l~~l--------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
.+..+.+. +.+..+..+-..|...++|++++.+++.+|+++|.|..+...++.||..
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 75544321 1122233444778889999999999999999999999999999999974
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=7.2e-12 Score=122.07 Aligned_cols=320 Identities=12% Similarity=-0.001 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------cCC-
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR--------------LDP- 307 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 307 (714)
..-.-+|.+++..|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 33455899999999999999999999988777899999999999999999999887766522 211
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Q 005108 308 -----------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDA 376 (714)
Q Consensus 308 -----------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~ 376 (714)
+..+-...||.+++..-.|++|++.|.+.+..... .+......+.+|.++..++-+.+.++-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-------y~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-------YIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 11334566788888888999999999998752211 112233455667777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc--CC----------------HHHHHHHhhccccCCCCCCCch--hhhhhhhhhhHHH
Q 005108 377 AIAAGADFSPQLSMCRVEALLKL--HQ----------------LEDAESSLSNIPKIEPSTVSSS--QTRFFGMLSEAYT 436 (714)
Q Consensus 377 al~~~p~~~~~~~~~la~~~~~~--g~----------------~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~ 436 (714)
-+...|+..... ..++..++++ |+ |+.+...++.-+-...+..... ...+.+.+ +.+
T Consensus 211 YL~q~pdStiA~-NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--PEA 287 (557)
T KOG3785|consen 211 YLRQFPDSTIAK-NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--PEA 287 (557)
T ss_pred HHHhCCCcHHHH-HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC--hHh
Confidence 777766643222 2222222221 11 1122222211111111100000 01112222 223
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH-----------hHHHHHH-----------------HHHHHh
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN-----------NVKLVAR-----------------ARARGN 488 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----------~l~~~~~-----------------~~~~g~ 488 (714)
..++...|..+++.++|+.+.+..--..|......-... .++.++. -...+.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 445555566666666666655554443333321111000 0111111 123467
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-PNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA 567 (714)
+++-..+|++-+.+++..-...-++....+++|.++...|+|.+|.+.|-+.-..+ .+.......||.||...++.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 77778889998888887777777788888999999999999999999887765433 23344556789999999999988
Q ss_pred HHHHH
Q 005108 568 VRDFE 572 (714)
Q Consensus 568 ~~~~~ 572 (714)
.+.|-
T Consensus 448 W~~~l 452 (557)
T KOG3785|consen 448 WDMML 452 (557)
T ss_pred HHHHH
Confidence 87664
No 135
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.46 E-value=2e-13 Score=115.06 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=79.0
Q ss_pred cCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 626 SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
..++++++.||++||+.|+.+.|.++++..++. ++.++++|+++.++++..++|.++|++++|++|+.+.++.|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 456789999999999999999999999998886 489999999999999999999999999999999999999999 899
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
+|.++|+
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988874
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=7.1e-13 Score=127.81 Aligned_cols=98 Identities=41% Similarity=0.591 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.+...|+.+++.++|++|+..|.+||+++|.|+.+|.++|.+|.++|+|+.|++.++.++.+||.+..+|.+||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC
Q 005108 321 VRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~ 338 (714)
+.+|++++|++.|+++++
T Consensus 160 ~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALE 177 (304)
T ss_pred HccCcHHHHHHHHHhhhc
Confidence 999999999999999997
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.46 E-value=2e-13 Score=116.17 Aligned_cols=91 Identities=22% Similarity=0.343 Sum_probs=79.7
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+.|+.++. +.++|.||++||++|+.+.|.++++...+. ++.|..||+++.+.+++.|+|.++||+++|++|+ +.
T Consensus 8 ~~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 84 (101)
T cd02994 8 DSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FR 84 (101)
T ss_pred hhhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EE
Confidence 456777664 347899999999999999999999998764 5889999999999999999999999999999998 47
Q ss_pred EEcCC-CHHHHHHHHhh
Q 005108 696 EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~ 711 (714)
++.|. +.+.|..+|+.
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999998863
No 138
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.45 E-value=1.8e-13 Score=116.81 Aligned_cols=91 Identities=24% Similarity=0.378 Sum_probs=80.8
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.++|...+... .+++.||++||++|+.+.|.++++..++. .+.|+.||++....+++.|+|.++||+++|++|+.
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 35677776544 69999999999999999999999988874 48899999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 005108 694 MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~ 709 (714)
+.++.|. +.+.|+++|
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888887764
No 139
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.45 E-value=4.1e-12 Score=135.14 Aligned_cols=236 Identities=18% Similarity=0.180 Sum_probs=195.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
|..+.....++.++...|-...|+..|++. +.+-....+|...|+..+|..+..+-++.+|+ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD--P 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--c
Confidence 344566778999999999999999998664 56667778899999999999999888885544 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
.+|..+|.+....--|++|.++.+.. .+.+.+.+|......++|+++.++++..++++|-
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~--------------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl 517 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI--------------------SARAQRSLALLILSNKDFSEADKHLERSLEINPL 517 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh--------------------hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc
Confidence 55655666666655566665555432 1445667777778889999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....|+.+ |.+..+.++++.|.++|..++.++|++.+.|+|++.+|.++++-.+|...++++++.+-+
T Consensus 518 q~~~wf~~------------G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 518 QLGTWFGL------------GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred chhHHHhc------------cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999977 999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHA 591 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~ 591 (714)
+..+|.+.-.+..+.|.|++|++.|.+.+.+.. .|.++...+...
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 999999999999999999999999999987643 345555444443
No 140
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=1e-11 Score=117.80 Aligned_cols=178 Identities=19% Similarity=0.147 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
.+...+-.....+|+. ..+ ..++..+...|+-+.+..+..++...+|.+ ...+..+|...+..|
T Consensus 51 ~a~~al~~~~~~~p~d-~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------------~~ll~~~gk~~~~~g 114 (257)
T COG5010 51 GAAAALGAAVLRNPED-LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------------RELLAAQGKNQIRNG 114 (257)
T ss_pred HHHHHHHHHHhcCcch-HHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------------HHHHHHHHHHHHHhc
Confidence 3555555666667763 344 668889999999999999999988888887 666777899999999
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
+|.+|+..++++..+.|++.++|..+ |.+|.+.|++++|...|.+++++.|+++.++.|+|..|.-.|
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLL------------GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 99999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
+++.|..++..+....+.+..+..+++.+...+|++++|.....+-
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999998888888999999999999999999998766543
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.7e-10 Score=115.19 Aligned_cols=275 Identities=19% Similarity=0.141 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+...-.+..-+.+.-+.|+++.|-.++.++-+..++ .......++..+...|+++.|.....++++..|.+..+...
T Consensus 113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrL 192 (400)
T COG3071 113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRL 192 (400)
T ss_pred cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHH
Confidence 34445567777788899999999999999999998444 35677888999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
...+|.+.|+|.+...++.++.+ .....+...++.- .+...-......+..+. +..+-+-+...-...+.+...++
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~-a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ-AWEGLLQQARDDNGSEG-LKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH-HHHHHHHHHhccccchH-HHHHHHhccHHhhcChhHHHHHH
Confidence 99999999999999999988766 2333332222211 11111111111111111 11111111111133566777789
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
.-+.++|+.++|.+..+++++..-+. . ...-.-...-++...=++..++.++..|+++..+..
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~---------------~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDP---------------R--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccCh---------------h--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 99999999999999999999887775 1 111122345688889999999999999999988877
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+ |..+++.+.|.+|..+|+.+++..| +...|..+|.++.++|+.++|.+.+++++.+
T Consensus 334 L------------G~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 334 L------------GRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred H------------HHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6 9999999999999999999999987 5678899999999999999999999999853
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=3.5e-12 Score=113.25 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 565 (714)
.|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++..|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 566 DAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.|.+.|+.++...-++++......++...+.
T Consensus 121 ~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 121 YAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999988655555555555554443
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=4.2e-12 Score=135.03 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=176.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
-|.-......++..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3445566677888888888888888888875 5666778888888888888888888877 555677777777
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+....--|++|.++.+.. +......+|....
T Consensus 465 Dv~~d~s~yEkawElsn~~------------------------------------------------sarA~r~~~~~~~ 496 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------------------------------------------------SARAQRSLALLIL 496 (777)
T ss_pred hhccChHHHHHHHHHhhhh------------------------------------------------hHHHHHhhccccc
Confidence 7776666666665554322 1222223455556
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..++|+++.++++..++++|-. ...|+.+|.+..+.++++.|.++|..++.++|++.+.|..+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq--------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl--- 559 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQ--------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL--- 559 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccc--------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh---
Confidence 6788889999999999888887 77899999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+..|.+.++-.+|...++++++.+-.+..+|.|.-.+..+.|.+++|++.|.+.+.+
T Consensus 560 ---------s~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 560 ---------STAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred ---------hHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888999999999999999999988888889999999999999999999999988775
No 144
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.42 E-value=1.8e-13 Score=117.21 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEeccc----CcchhhhCCccccceEEEEe-
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDIDE----SPGVAHAENVRIVPTFKIYK- 689 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~- 689 (714)
+.+.+++...++++|.||++||++|+.+.|.+ .++...+. .+.++.||+++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 35666777788999999999999999999887 56777766 68899999987 56889999999999999997
Q ss_pred -CCeEEEEEcCC-CHHHHHHHHh
Q 005108 690 -NGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 690 -~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
+|+++.++.|. +.++|+++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 89999999999 9999998874
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.41 E-value=5.2e-12 Score=112.15 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=100.6
Q ss_pred hcCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Q 005108 234 RGGIC-GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRA 312 (714)
Q Consensus 234 ~~~~~-p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 312 (714)
+..+. +++-+.++.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 33466 78889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
++++|.+++..|+.+.|++.|+.++.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 146
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.41 E-value=1.4e-11 Score=116.74 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=153.9
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+...+...+-+....+|++ ..+ ..++..+...|+-+.+..+..++....|.+.++...+
T Consensus 48 q~~~a~~al~~~~~~~p~d--------------~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~------ 106 (257)
T COG5010 48 QTQGAAAALGAAVLRNPED--------------LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQ------ 106 (257)
T ss_pred hhhHHHHHHHHHHhcCcch--------------HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHH------
Confidence 3344666666677788887 556 8889999999999999999999999999998887554
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|...+..|+|.+|+..++++..+.|+|.++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-
T Consensus 107 ------gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 107 ------GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred ------HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.|+++.|..++..+...-+.+..+.++|..+......
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999887665544
No 147
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.41 E-value=9.8e-13 Score=114.85 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=77.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----------chhhhC----Cccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----------GVAHAE----NVRI 681 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----------~l~~~~----~v~~ 681 (714)
+.+++...+...+..+++|+++||++|+.+.|.|+++.++ .++.+++||+|... ++.+.| +|++
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 3456777887888899999999999999999999999988 45778999998543 333454 5667
Q ss_pred cceEEEEeCCeEEEEEcCC--CHHHHHHHHh
Q 005108 682 VPTFKIYKNGSRMKEIVCP--SRDMLEHSVR 710 (714)
Q Consensus 682 ~Pt~~~~~~G~~~~~~~g~--~~~~l~~~~~ 710 (714)
+|||++|++|+.+.+++|. +.++|++++.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 9999999999999999994 7999988764
No 148
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=3.6e-10 Score=122.52 Aligned_cols=271 Identities=14% Similarity=0.098 Sum_probs=193.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCcHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-----RIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~ 311 (714)
...+....+-.+|..+++.|++++|...|...|+.+|+|...|..+..+..... +.+.-...|++.....|....
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 445667888899999999999999999999999999999999999998884333 567778888888877776432
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH---HHHc-------
Q 005108 312 AHQRLGSLLVRLGQVEN-ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDA---AIAA------- 380 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~---al~~------- 380 (714)
. ..+...+..-..+.. +..++...+...-|.....+..+ |.......-....+.. .++.
T Consensus 113 ~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L---------y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~ 182 (517)
T PF12569_consen 113 P-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL---------YKDPEKAAIIESLVEEYVNSLESNGSFSNG 182 (517)
T ss_pred h-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH---------HcChhHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 2 222222222223333 33344555555555554444333 1111111111122222 1111
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 381 ------GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 381 ------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
.|.....+++.+|..|...|++++|+++++++++..|.. ...|...|.++.+.|++++|.
T Consensus 183 ~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~--------------~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 183 DDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL--------------VELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred cccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--------------HHHHHHHHHHHHHCCCHHHHH
Confidence 111112344668999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCC-------HHHHHHHHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSN-------SVLYCNRAACWF 525 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~ 525 (714)
+.++.+..+|..+--.-... +..+++.|+.++|.+.+..-.+.+ |.. .+.....|.+|.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~------------aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKC------------AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHHHHHhCChhhHHHHHHH------------HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999876554443 778899999999999987765544 211 234455799999
Q ss_pred HhCCHHHHHHHHHHHHHh
Q 005108 526 KLGQWERSVEDSNQALLI 543 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~ 543 (714)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999999999988875
No 149
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.4e-09 Score=107.53 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=193.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+..+...|...+.+-++......|..++++|+.+-|.-...|+.....--.+|+...|.+.|++-++..|+ ..+|..
T Consensus 101 dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~s 179 (677)
T KOG1915|consen 101 DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLS 179 (677)
T ss_pred hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHH
Confidence 3455677888889999999999999999999999999988888888888888888888888888888887775 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHH----------------------------HHHHhHHHHHcCC
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEK----------------------------HLSKCTDARKVGD 366 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~----------------------------~~~~a~~~~~~g~ 366 (714)
....-.+.+.++.|...|++.+- .++..++......+. +...+.--...+.
T Consensus 180 fI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445444444433 222222221111100 0001111112333
Q ss_pred HHHHHHHHHHHHH--------------------------------------------cCCCCCHHHHHHHHHHHHHcCCH
Q 005108 367 WKSALREGDAAIA--------------------------------------------AGADFSPQLSMCRVEALLKLHQL 402 (714)
Q Consensus 367 ~~~Al~~~~~al~--------------------------------------------~~p~~~~~~~~~la~~~~~~g~~ 402 (714)
++.|..+|+-++. .+|- +.+.|.....+....|+.
T Consensus 260 ~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 260 YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCH
Confidence 4444444444443 3443 233344455666667888
Q ss_pred HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH-HHHHhCcHHHHHHHHHHHhccCCCC----HHHHHHHHhH
Q 005108 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ-IEMALGRFENAVTAAEKAGQIDPRN----VEVAVLLNNV 477 (714)
Q Consensus 403 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~l 477 (714)
+.-.+.|++++..-|.-. ........ .+.|.+.+. .-+...+.+.+.+.|+.++++-|.. ...|.++...
T Consensus 339 ~~Ire~yErAIanvpp~~---ekr~W~RY--IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPAS---EKRYWRRY--IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred HHHHHHHHHHHccCCchh---HHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 888888888887665431 11111111 333433332 2244788999999999999998864 4455554221
Q ss_pred H-------HH--------------HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 478 K-------LV--------------ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 478 ~-------~~--------------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
. .+ ..++....+-.++++++....+|++-|+..|.+..+|...|.+-..+|+++.|...
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 00 00111122334455666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 537 SNQALLIQPNYTKA--LLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 537 ~~~al~~~p~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
|+-|+....-+..- |-.....-...|.+++|...|+++|+..+..+
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 66666533222222 22222233455666666666666666665544
No 150
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=3.5e-11 Score=135.16 Aligned_cols=148 Identities=12% Similarity=0.024 Sum_probs=135.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHH
Q 005108 377 AIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456 (714)
Q Consensus 377 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 456 (714)
.....|. ....+.++|.+....|.+++|+..++.++++.|++ ..++..++.++.+++++++|+..
T Consensus 78 ~~~~~~~-~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------------~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 78 YVRRYPH-TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------------SEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HHHhccc-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------------HHHHHHHHHHHHHhccHHHHHHH
Confidence 3334454 36778889999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
+++++..+|++...++.+ |.++.+.|++++|+.+|++++..+|+++.++..+|.++.+.|+.++|...
T Consensus 143 ~~~~l~~~p~~~~~~~~~------------a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 143 IELYFSGGSSSAREILLE------------AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHhhcCCCCHHHHHHH------------HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHH
Q 005108 537 SNQALLIQPNYTKAL 551 (714)
Q Consensus 537 ~~~al~~~p~~~~~~ 551 (714)
|+++++...+-...|
T Consensus 211 ~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 211 LQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhhCcchHHH
Confidence 999999766555443
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=6.8e-11 Score=110.89 Aligned_cols=176 Identities=16% Similarity=0.082 Sum_probs=155.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
......++.+.|..+++......|.+ ..+....|..+...|++++|+++|+..++.+|.+ ..++.
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~--------------~v~~K 124 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD--------------TVIRK 124 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch--------------hHHHH
Confidence 33566788999999999988888774 4555558999999999999999999999999998 66677
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
..-.+...+|+.-+|++.+.+.++..+.+.++|..+ +.+|+..|+|++|.-+|++++-++|.++..+.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL------------aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL------------AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH------------HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 777888889999999999999999999999999977 99999999999999999999999999999999
Q ss_pred HHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 519 NRAACWFKLG---QWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 519 ~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.+|.+++-+| +++-|.++|.++++++|.+..+++.+-.+...+
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999998877 577899999999999998888887776665443
No 152
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.40 E-value=7.9e-13 Score=113.06 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=80.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.|..+. ..+++++.||++||++|+.+.|.++++...+. ++.+..+|++..+.+++.|+|.++||+++|++|. +
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 4555543 46799999999999999999999999998873 3888999999999999999999999999998774 5
Q ss_pred EEEcCC-CHHHHHHHHhhhc
Q 005108 695 KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~~ 713 (714)
.++.|. +.+.|.+++++.+
T Consensus 85 ~~~~G~~~~~~l~~~~~~~~ 104 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRVA 104 (104)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 678888 9999999998763
No 153
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.40 E-value=1.3e-12 Score=111.37 Aligned_cols=94 Identities=26% Similarity=0.504 Sum_probs=83.6
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+++...+.. .+.+++.||++||+.|+.+.|.+.++..+++ ++.|+.+|++....+++.|+|..+|++++|++|+.+.+
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 345554444 4599999999999999999999999998887 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9999 889999999864
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.39 E-value=6.7e-12 Score=131.87 Aligned_cols=116 Identities=26% Similarity=0.466 Sum_probs=111.0
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
+...|..++..|+|++|+.+|+++++++|++..+|+++|.+|.++|++++|+.+++++++++|++..+|+.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
++++|+.+|+++++++|++..+...+..+...+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888654
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=7.7e-11 Score=112.53 Aligned_cols=295 Identities=15% Similarity=0.069 Sum_probs=224.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 251 ELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 251 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
.+.+..+|.+|++++..-.+..|.+-..+..+|.||+...+|.+|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHh
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQLSMCRVEALLKLHQLEDAESSL 409 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (714)
.....+... +........ -.+.+.+..+|+..+....++ -| +.......+.|.+.++.|++++|++-|
T Consensus 99 rV~~~~~D~--~~L~~~~lq-----LqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHSRVLQ-----LQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHhcCC--HHHHHHHHH-----HHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHH
Confidence 998777643 211111111 123334556666666554443 34 345666777999999999999999999
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc----CCCC--------HHHH-----H
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI----DPRN--------VEVA-----V 472 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--------~~~~-----~ 472 (714)
+.+++..--. ...-++++.+++..++++.|+++..+.++. .|+. +++. .
T Consensus 168 qaAlqvsGyq--------------pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 168 QAALQVSGYQ--------------PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHhhcCCC--------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 9999987776 557889999999999999999988776643 3321 1111 1
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
.+..-..++.+.-++.++++.++++.|.+.+..+--.. .-++..+.+++..-. .+++.+..+-++-.++++|--.+.
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHH
Confidence 11222345556667899999999999988775543221 225778888876543 466777888888888999977788
Q ss_pred HHHHHHHHHHhccHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~ 571 (714)
+-++-.+|++..-|+.|...+
T Consensus 313 FANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHH
Confidence 888888999988888777654
No 156
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.39 E-value=1.2e-12 Score=111.85 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=84.6
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+....++++.||++||+.|+.+.|.++++...+. ++.|+.+|+++...+++.|+|..+|++++|++|+.+.
T Consensus 4 ~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred hhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcce
Confidence 4566666677789999999999999999999999988886 4999999999999999999999999999998888788
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+.+|+++
T Consensus 84 ~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 84 DYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred eecCCCCHHHHHHHHHhc
Confidence 89999 999999999875
No 157
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.38 E-value=1.2e-12 Score=112.24 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=80.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc--CcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE--SPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..+...+...+.++|.||++||++|+.+.|.++++...+. .+.|+.+|++. ...++..|+|+++||+++|++|++
T Consensus 8 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 8 EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred HhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe
Confidence 4666677777799999999999999999999999988775 37888999998 889999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 005108 694 MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~ 709 (714)
+.++.|. +.+.|.++|
T Consensus 88 ~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 88 VEKYEGERTAEDIIEFM 104 (104)
T ss_pred eEEeCCCCCHHHHHhhC
Confidence 9999998 888887764
No 158
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1e-11 Score=112.12 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=111.0
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
+.|++++..+|++ ....+.+|..+...|++++|+..+++++..+|.+..++..+
T Consensus 4 ~~~~~~l~~~p~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------ 57 (135)
T TIGR02552 4 ATLKDLLGLDSEQ--------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL------------ 57 (135)
T ss_pred hhHHHHHcCChhh--------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH------------
Confidence 4577888899988 77889999999999999999999999999999999998876
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.++...|++++|+.+|+++++.+|.++..++.+|.+|...|++++|+..|+++++++|++....
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999887543
No 159
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=125.52 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred hhhHHhhhccC-----CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 617 SLEQFRAAVSL-----PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 617 ~~e~~~~~i~~-----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.|+..+.. .++++|.||++||++|+.+.|.++++..++++ +.|.+||+++.++++++|+|.++||+++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 44577776532 46899999999999999999999999999975 8899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+.+....|. +.+.|.+++..
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHH
Confidence 9999888887 99999998875
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=4.1e-12 Score=126.08 Aligned_cols=271 Identities=17% Similarity=0.110 Sum_probs=182.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 005108 283 AAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358 (714)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a 358 (714)
|.-++++|++...+..|+.|++...++ ...|..||..|..+++|++|+++-..-+. +
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt---------l---------- 84 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT---------L---------- 84 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH---------H----------
Confidence 667889999999999999999988776 34678888999999999988886422110 0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
...+|+- . + ......++|+.+--+|.|++|+.+..+-+.+.. .+.+.+.+..++|
T Consensus 85 --ar~lgdk---------l---G---EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ar--------eLgDrv~e~RAlY 139 (639)
T KOG1130|consen 85 --ARLLGDK---------L---G---EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAR--------ELGDRVLESRALY 139 (639)
T ss_pred --HHHhcch---------h---c---cccccccccchhhhhcccchHHHHHHHHhHHHH--------HHhHHHhhhHHHh
Confidence 0000100 0 0 011123478888888888888888877665432 2345566788899
Q ss_pred HHHHHHHHhCc-------------HHHHHHHHHHHhccCCCCHHHHHHHHh-HHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 439 VRAQIEMALGR-------------FENAVTAAEKAGQIDPRNVEVAVLLNN-VKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 439 ~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~-l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
++|.+|...|+ .+++...++.+++....+.+....+.. +..-..+-++|+.|+-.|+|++|+..-+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~ 219 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHK 219 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHH
Confidence 99999988765 244555555555443333222222211 1111223456889999999999999888
Q ss_pred HhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhccHHHHHHHHH
Q 005108 505 EGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQALLI----QPN--YTKALLRRAASNSKLEKWADAVRDFE 572 (714)
Q Consensus 505 ~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~eA~~~~~ 572 (714)
.-+.+... .-.++.++|.|+.-+|+++.|+++|++.+.+ ... ..+..|.||..|.-+.++++||.|++
T Consensus 220 ~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 220 LRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 77766332 2478899999999999999999999987653 222 34667999999999999999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHhhh
Q 005108 573 VLRRELPDD------NEIAESLFHAQVSLKK 597 (714)
Q Consensus 573 ~al~~~p~~------~~~~~~L~~~~~~l~~ 597 (714)
+-+.+..+- ..+...|..+...+..
T Consensus 300 rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 300 RHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 877664322 2334455555544443
No 161
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.36 E-value=1.6e-12 Score=112.38 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=78.7
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--CcchhhhCCccccceEEEEeCCe--
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE--SPGVAHAENVRIVPTFKIYKNGS-- 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~-- 692 (714)
+.|...+.. ..+++|.||++||++|+.+.|.++++..++.+ +.|+.+|++. .++++..|+|.++||+++|++|+
T Consensus 8 ~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 8 KNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 456665544 45699999999999999999999999998865 8899999998 88999999999999999998886
Q ss_pred ---EEEEEcCC-CHHHHHHHHh
Q 005108 693 ---RMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 693 ---~~~~~~g~-~~~~l~~~~~ 710 (714)
...++.|. +.+.|.++|.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 45667788 9999988873
No 162
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.34 E-value=3e-12 Score=109.82 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=79.2
Q ss_pred ehhhhHHhhhccC--CCceEEEeec-------CCCccccccchHHHHHHhhCC-CcEEEEEeccc-------CcchhhhC
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDE-------SPGVAHAE 677 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~-------~~~l~~~~ 677 (714)
+.+.+.|.+.+.. +++++|+||| +||++|+.+.|.++++..+++ ++.|++||+++ +.+++..|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 3445566666654 5689999999 999999999999999999998 69999999987 45899999
Q ss_pred Ccc-ccceEEEEeCCeEEEEEcCCCHHHHHHHH
Q 005108 678 NVR-IVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709 (714)
Q Consensus 678 ~v~-~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~ 709 (714)
+|. ++||+++|++|+++..--+.+.+.+..++
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999 99999999999877766666777776654
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-11 Score=123.61 Aligned_cols=123 Identities=27% Similarity=0.415 Sum_probs=109.4
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.+...+..|+.|++.|+|..|...|++++..-... ..++.|++.||.++++|.+|+..++++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34445567999999999999999999998753211 467899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 544 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
+|+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...|..+...++....+
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887765443
No 164
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.32 E-value=5.4e-12 Score=107.93 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=78.9
Q ss_pred hhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 618 LEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 618 ~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+.+...+.. ..++++.||++||++|+.+.|.+.++..+++ .+.|+.+|+++.+++++.|+|+++|++++|++| +..
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 3556665544 4469999999999999999999999998886 489999999999999999999999999999999 555
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.++.|. +.++|..|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 677788 989888875
No 165
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=5.3e-10 Score=106.89 Aligned_cols=280 Identities=16% Similarity=0.097 Sum_probs=192.1
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.+...|.+-..+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+.+|+.....+...+.-.....
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999887755422234556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..-+.+.+..+++..+....++.-...+.. ...+.+.+.++.|+++.|++-|+.+++..- +.+-+.++++
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad---------~~in~gCllykegqyEaAvqkFqaAlqvsG-yqpllAYniA 185 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEAD---------GQINLGCLLYKEGQYEAAVQKFQAALQVSG-YQPLLAYNLA 185 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccc---------hhccchheeeccccHHHHHHHHHHHHhhcC-CCchhHHHHH
Confidence 666777888888888888877654322222 234456668899999999999999999864 3455666799
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCch---------h------hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSS---------Q------TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 458 (714)
.++++.++++.|+++..++++..-.+-+.. . ......-....++...+.++++.++++.|.+.+.
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 999999999999998887765433221110 0 1111122335567888899999999999988776
Q ss_pred HHhccCCCC--HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 459 KAGQIDPRN--VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 459 ~al~~~p~~--~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
.+--....+ +..+..+ +. --..+++.+...-++-.+.++|--.+.+.++-.+|++..-|+-|.+.
T Consensus 266 DmPPRaE~elDPvTLHN~------------Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 266 DMPPRAEEELDPVTLHNQ------------AL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred cCCCcccccCCchhhhHH------------HH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 543211111 1111111 11 11223444555555555555665555555555555555555555443
No 166
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.4e-11 Score=107.77 Aligned_cols=119 Identities=35% Similarity=0.603 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
..+..++.-|+-++..|+|++|..-|..||.+.|.. ..+|.++|.++++++.|+.|++.+.++++++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 344555667999999999999999999999999875 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
++|.+|.++.+|++|++.|+++++++|...++++.+.++-..+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999888877655554
No 167
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.29 E-value=1.4e-11 Score=102.92 Aligned_cols=90 Identities=34% Similarity=0.610 Sum_probs=81.2
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~ 700 (714)
+...+....++++.||++||+.|+.+.+.++++..+.+++.|+.+|++...+++..|+|.++|++++|++|+.+..+.|.
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 44455555789999999999999999999999998878899999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHh
Q 005108 701 -SRDMLEHSVR 710 (714)
Q Consensus 701 -~~~~l~~~~~ 710 (714)
+.+.|.++|+
T Consensus 83 ~~~~~l~~~i~ 93 (93)
T cd02947 83 DPKEELEEFLE 93 (93)
T ss_pred CCHHHHHHHhC
Confidence 7788888774
No 168
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=3.4e-10 Score=116.22 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..++|..+..++..|++++|+..++..+...|+|+.++... +.++++.++..+|++.+++++.++|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------------~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------------GDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 45678888888888888888888888888888888777655 888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
..++.++|.+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+-+.+.+.-.-..+...+..+..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888887777777766666666666555
Q ss_pred Hh
Q 005108 594 SL 595 (714)
Q Consensus 594 ~l 595 (714)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 44
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.28 E-value=1.1e-10 Score=118.14 Aligned_cols=233 Identities=20% Similarity=0.164 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP--NYWRAHQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~ 318 (714)
+.+....+.+.+..+|+++..+...... .+....+...++..+....+.+.++..++..+.... .+.......|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 4566778899999999998877665442 233345556667666655677788887776654332 34555666677
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++...|++++|++.+.+. ...+.......+|+.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----------------------------------------------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----------------------------------------------GSLELLALAVQILLK 143 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-----------------------------------------------CcccHHHHHHHHHHH
Confidence 787888888888766432 122334447788999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
+++++.|.+.++.+.+.+.+. ..+....+++.+..| ++.+|...|++..+..+..+..+..+
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~--------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~-- 207 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDS--------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL-- 207 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCH--------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH--
Confidence 999999999999998887775 444444555555555 69999999999888777776665544
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW-ERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 549 (714)
+.++..+|+|++|.+.++++++.+|+++.++.+++.+...+|+. +.+.+++.++...+|+++.
T Consensus 208 ----------A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 208 ----------AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp ----------HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred ----------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999999999999998 6677888888889999873
No 170
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.26 E-value=1e-11 Score=110.23 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred hHHhhhccCC-CceEEEeecCCCccccccchHHH---HHHhhCC-CcEEEEEecccC-------------cchhhhCCcc
Q 005108 619 EQFRAAVSLP-GVSVVHFKSASNLHCKQISPYVE---TLCGRYP-SINFLKVDIDES-------------PGVAHAENVR 680 (714)
Q Consensus 619 e~~~~~i~~~-~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~~-~~~~~~vd~d~~-------------~~l~~~~~v~ 680 (714)
+.+..++... ++++|.||++||++|+.+.|.+. .+...+. ++.++.||+++. .+++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3455556666 89999999999999999998774 4544443 578899999874 5789999999
Q ss_pred ccceEEEE-eC-CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 681 IVPTFKIY-KN-GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++||+++| ++ |+++.++.|. +.+.++..|+.+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 99999999 45 7999999999 889999988875
No 171
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.25 E-value=1.1e-11 Score=105.42 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=81.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+|...+...+.+++.||++||+.|+.+.|.+.++...+ ..+.|+.+|+++...+++.|+|+.+||+++|++| +.+
T Consensus 6 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~ 85 (101)
T cd02961 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEP 85 (101)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCccc
Confidence 467777777779999999999999999999999999888 4699999999999999999999999999999777 888
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.++.|. +.+.|.++|
T Consensus 86 ~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 86 VKYEGPRTLESLVEFI 101 (101)
T ss_pred ccCCCCcCHHHHHhhC
Confidence 889888 888887764
No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=7.2e-09 Score=124.56 Aligned_cols=288 Identities=13% Similarity=-0.017 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN---------YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH 346 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 346 (714)
+.....++.++...|++++|...+..+....+. .......++.++...|++++|..++++++........
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~- 487 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY- 487 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-
Confidence 445566788888999999999999988654221 2345566788899999999999999998763222111
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCC
Q 005108 347 RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-----SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421 (714)
Q Consensus 347 ~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 421 (714)
.........++..+...|++++|...+++++...... ....+..++.++...|++++|...+++++........
T Consensus 488 -~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 -YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1122334567777889999999999999998763321 1234456899999999999999999998875322100
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHH
Q 005108 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ 501 (714)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~ 501 (714)
.........+..++.++...|++++|...+++++........... ...+..++.++...|++++|..
T Consensus 567 ------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 567 ------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ-------LQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH-------HHHHHHHHHHHHHcCCHHHHHH
Confidence 000012344667899999999999999999999875432111000 0112235889999999999999
Q ss_pred HHHHhhccCCCC---HHHHH----HHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHH
Q 005108 502 AYGEGLRFDPSN---SVLYC----NRAACWFKLGQWERSVEDSNQALLIQPNYT----KALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 502 ~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~ 570 (714)
.+++++.+.... ..... .....+...|+.++|..++.......+... ..+..++.++...|++++|...
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999987653221 11111 123455668999999999877655332222 2256789999999999999999
Q ss_pred HHHHHHhC
Q 005108 571 FEVLRREL 578 (714)
Q Consensus 571 ~~~al~~~ 578 (714)
+++++...
T Consensus 714 l~~al~~~ 721 (903)
T PRK04841 714 LEELNENA 721 (903)
T ss_pred HHHHHHHH
Confidence 99998863
No 173
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=5.1e-10 Score=114.91 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....++-.+..++..|++++|+..++.+++..|+| .+.+-..+.+++..++.++|.+.+++++.++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--------------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--------------PYYLELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 34556668999999999999999999999999999 8889999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|+....+..+ |+.|++.|++++|+..++..+..+|+++..|..||..|..+|+..+|..
T Consensus 371 P~~~~l~~~~------------a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------- 429 (484)
T COG4783 371 PNSPLLQLNL------------AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------- 429 (484)
T ss_pred CCccHHHHHH------------HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------
Confidence 9998887766 9999999999999999999999999999999999999999998766654
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHH
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRREL-PDDNEI 584 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~ 584 (714)
..+..|...|+|++|+..+..+.+.. .+.+..
T Consensus 430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 45667778899999999999999877 444443
No 174
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.24 E-value=1.7e-11 Score=105.14 Aligned_cols=91 Identities=25% Similarity=0.326 Sum_probs=77.8
Q ss_pred hHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc-CcchhhhCCccccceEEEEeCC-e
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE-SPGVAHAENVRIVPTFKIYKNG-S 692 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~G-~ 692 (714)
++++..+...+ .+++.||++||++|+.+.|.+.++..++. .+.++.+|++. .+.+++.|+|.++|++++|++| +
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 45566665544 89999999999999999999999998875 48899999999 9999999999999999999777 5
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~ 709 (714)
....+.|. +.++|.++|
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66677787 888888764
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=1.4e-09 Score=110.99 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 434 AYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 434 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
+..+..+|.+|... |++++|+++|++|+++.......... ...+...|.++.+.|+|++|++.|++.....-+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 45667778888888 89999999999998764322211111 122335599999999999999999998875322
Q ss_pred C-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--hccHHHHHHHHHHHHHhC
Q 005108 513 N-------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-----KALLRRAASNSK--LEKWADAVRDFEVLRREL 578 (714)
Q Consensus 513 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g~~~eA~~~~~~al~~~ 578 (714)
+ ...++..+.|++..|++..|.+.+++....+|... .....+-.++.. ...+++|+..|+..-+++
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 1 24567788899999999999999999999988653 445555555543 457888999888777665
Q ss_pred C
Q 005108 579 P 579 (714)
Q Consensus 579 p 579 (714)
+
T Consensus 268 ~ 268 (282)
T PF14938_consen 268 N 268 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 176
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=1.7e-07 Score=98.88 Aligned_cols=330 Identities=14% Similarity=0.066 Sum_probs=236.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAIS-LAPRN-----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN- 308 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 308 (714)
+-+|++++.|..... +..|+..+-+..|.+|++ .+|.. ...|..+|..|...|+.+.|...|+++.+..-.
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 347888888887755 457889999999999986 46654 568999999999999999999999999987533
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH-----------HHHHHHHHHHHHHhHHHHHcCCHHHHHHHH
Q 005108 309 ---YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE-----------VHRLQVVEKHLSKCTDARKVGDWKSALREG 374 (714)
Q Consensus 309 ---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~ 374 (714)
-...|...|..-.+..+++.|+.+.+.+...+.... ......+..|...++.....|-++.....|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 267899999999999999999999999876333211 122344555666777778889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 375 DAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 375 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
++++.+.-- .+++..+.|..+....-++++.+.|++.+.+.+-... ......|......-+.--+.+.|.
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v---------~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV---------YDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH---------HHHHHHHHHHHHHHhcCCCHHHHH
Confidence 999988654 5777888999999999999999999999998876411 001122333333334445799999
Q ss_pred HHHHHHhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-----hC
Q 005108 455 TAAEKAGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK-----LG 528 (714)
Q Consensus 455 ~~~~~al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g 528 (714)
.+|++|++.-|.. ....+++ .+..-.+-|.-..|+..|++|-..-+.. -.+.+=.+|.+ .|
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLl-----------YA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLL-----------YAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC
Confidence 9999999987732 2222221 2555666688889999999976643321 11112222221 12
Q ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYT--KALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHA 591 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~ 591 (714)
...-...|++|++.-|+.. ......+..-.++|..+.|...|.-+-++.+ .+.+.++.....
T Consensus 638 -v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 638 -VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred -CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 3345678888988877754 4556778888999999999999988877643 234555544433
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=2.2e-10 Score=120.38 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
+...|..++..|+|++|+.+|+++++++|++..++..+ |.+|...|++++|+..++++++++|+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~------------a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADR------------AQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 56678999999999999999999999999999988765 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
|+.+|.+|..+|+|++|+..|+++++++|++..+...++.+..++.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888876663
No 178
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=6.1e-08 Score=102.12 Aligned_cols=317 Identities=15% Similarity=0.117 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH-----HHHHHHHHHHHCC-------------CHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAA-----FRSNRAAALTGLG-------------RIGEAVKECE 300 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~-----~~~~la~~~~~~g-------------~~~~A~~~~~ 300 (714)
...|..+|+.|...|.|++|...|++++..-- +... +.+.--.+-..++ +++-....|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 46788999999999999999999999987532 1111 1111111112222 2233344444
Q ss_pred HH------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH-HHHHHHHHHHHhHHHHHcCCH
Q 005108 301 EA------------VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH-RLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 301 ~a------------l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~l~~~~~~~~~a~~~~~~g~~ 367 (714)
.. +..+|++..-|.....+ ..|+..+-+..|..+++..+|.... .+. ..+...+..|...|+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~--~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPG--TLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChh--hHHHHHHHHHHhcCcH
Confidence 44 34577788777776655 4688999999999998855554321 111 3466778889999999
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCC-------CCchhhhhhhhhhhHHHH
Q 005108 368 KSALREGDAAIAAGADFS---PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST-------VSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 368 ~~Al~~~~~al~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~ 437 (714)
+.|...|+++.+..-... ..+|..-|..-++..+++.|+++++++...-... ....+.++... ..+|
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS---lkiW 480 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS---LKIW 480 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh---HHHH
Confidence 999999999999865433 6778888999999999999999999987653331 11223333322 4567
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCCHH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSNSV 515 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 515 (714)
...+......|-++.....|++.+++.--.+.....+ |..+....-+++|.+.|++.+.+. |.-.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny------------AmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY------------AMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 7888888889999999999999998877777776655 777888888899999999998875 34455
Q ss_pred HHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWF---KLGQWERSVEDSNQALLIQPNY-T-KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 516 ~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|...-..+. .--..+.|...|++|++..|.. . ..|+..+..-.+-|.-..|+..|++|-..
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5554433332 2346888999999999977632 2 33445566666667777777777776543
No 179
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.19 E-value=4.7e-11 Score=102.28 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEecccCcchhhhCCccccceEEEEeCCe--
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS-- 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~-- 692 (714)
..|...+.. ...++|.||++||++|+.+.|.++++...+.+ +.|+++|+++. +++..++|.++||+++|++|+
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~ 86 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKS 86 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcC
Confidence 456665544 46899999999999999999999999988754 88999999886 688899999999999999998
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~ 709 (714)
...++.|. +.+.|.++|
T Consensus 87 ~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 87 NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CceEccCCcCHHHHHhhC
Confidence 56678888 888887764
No 180
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.19 E-value=7.8e-11 Score=95.92 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=69.7
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
.+..||++||++|+.+.|.++++..++. .+.+++||+++.++++++|+|+++||+++ +|+ .++.|. +.++|+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999998885 48899999999999999999999999986 887 377888 99999999
Q ss_pred Hhhh
Q 005108 709 VRHY 712 (714)
Q Consensus 709 ~~~~ 712 (714)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8764
No 181
>PHA02125 thioredoxin-like protein
Probab=99.18 E-value=4.9e-11 Score=94.71 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=61.2
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~~~ 709 (714)
++.|+++||++|+.+.|.++++. +.+++||.++.++++..|+|+++||++ +|+.+.++.|+ +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 68999999999999999997653 468999999999999999999999987 89999999998 556676654
No 182
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=7.7e-10 Score=97.15 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=96.4
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAAS 557 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 557 (714)
...|..+...|++++|++.|+++++.+|++ ..+++.+|.++.+.|++++|+..|++++..+|++ ..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 355999999999999999999999998876 5789999999999999999999999999998885 6789999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+.++|++++|+.+|+++++..|++..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999999999999999998876654
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.6e-08 Score=94.50 Aligned_cols=264 Identities=16% Similarity=0.136 Sum_probs=180.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 329 (714)
+.++-.|+|..++..-++.-... ........+...|..+|++..-+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44566788888887777665443 567777788888888888876555444322 11233333444433333333222
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHh
Q 005108 330 RRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSL 409 (714)
Q Consensus 330 ~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (714)
+..+ ++..+.........+...-+.+|+..+++++|++..
T Consensus 92 ~~~l----------------------------------------~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~ 131 (299)
T KOG3081|consen 92 LASL----------------------------------------YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKAL 131 (299)
T ss_pred HHHH----------------------------------------HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHH
Confidence 2221 111222222223344455678899999999999988
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~ 489 (714)
..... ..+...--+++.++.+++-|...++++.+++.+..-. .+. ..| ...
T Consensus 132 ~~~~~-------------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt--QLA-----~aw---v~l 182 (299)
T KOG3081|consen 132 HLGEN-------------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT--QLA-----QAW---VKL 182 (299)
T ss_pred hccch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH--HHH-----HHH---HHH
Confidence 77322 3345555678889999999999999999887765322 120 000 111
Q ss_pred HhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH-
Q 005108 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV- 568 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~- 568 (714)
....+++.+|.-+|++.-+..+..+.++..++.|.+.+|+|++|...++.++..++++++++.++..+-..+|+..++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 2334578999999999999888899999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~ 586 (714)
++..+....+|+++-+..
T Consensus 263 r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHHHHhcCCcchHHHH
Confidence 456677778888776543
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.14 E-value=2.7e-10 Score=110.79 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=105.3
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
++.+|+.|+++|+|++|+.+|.+++..+|.++..+.++|.+|++++.|..|...|+.|+.++..+..+|-+++.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
+..+|.+.++.+|++.|++.+....+..+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999988877766544
No 185
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.13 E-value=9.1e-09 Score=101.16 Aligned_cols=322 Identities=13% Similarity=0.053 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC--cHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRL----DPN--YWRA 312 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a 312 (714)
+......|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++...-..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999998754332 345556778888999999887765444332 221 2578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-----DFSPQ 387 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~ 387 (714)
+.+++..+.+..++.+++.+-...+..+.......- ...++..+..+..++.++++++.|+++++... -..-+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 999999999999999999887766552211110000 12344466678888999999999999998743 23346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC--
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-- 465 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 465 (714)
++..++..|.++.++++|+-+..++.++-.... .+-...-....+++.++..+..+|+.-.|.++.+++.++.-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~----l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG----LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC----cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 677799999999999999999998877643321 00011112355788899999999999999999999876532
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHH-----HH
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWER-----SV 534 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~ 534 (714)
.+...+ ...+..+|++|...|+.+.|..-|+.|+..-.. ..+++...|.|+....-..+ |+
T Consensus 240 Gdra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 240 GDRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred CChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 111111 112235699999999999999999998875221 24566667777766554444 88
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 535 EDSNQALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 535 ~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+.-++++++... ..+.+..++.+|..+|.-++-...+.++-+.
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 888888876432 1367788999998888888777777665544
No 186
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.13 E-value=1.3e-10 Score=100.12 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=73.5
Q ss_pred hHHhhhc---cCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-Ccchhh-hCCccccceEEEEeCC
Q 005108 619 EQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-SPGVAH-AENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i---~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-~~~l~~-~~~v~~~Pt~~~~~~G 691 (714)
+.|+..+ ..+.++++.||++||++|+++.|.+.++...+. ++.++.||++. ...++. .|+|+.+||+++|++|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 3555544 346799999999999999999999999998885 48899999997 567776 5999999999999665
Q ss_pred -eEEEEEcCC--CHHHHHHHH
Q 005108 692 -SRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 692 -~~~~~~~g~--~~~~l~~~~ 709 (714)
.....+.|. +.+.|..+|
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 456677773 888887664
No 187
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.13 E-value=1.6e-10 Score=112.67 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCceEEEeec---CCCccccccchHHHHHHhhCCCcE--EEEEecccCcchhhhCCccccceEEEEeCCeEEE-EEcCC-
Q 005108 628 PGVSVVHFKS---ASNLHCKQISPYVETLCGRYPSIN--FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK-EIVCP- 700 (714)
Q Consensus 628 ~~~~vv~f~a---~~c~~C~~~~p~l~~l~~~~~~~~--~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~-~~~g~- 700 (714)
.++.++.|.+ +||++|+.+.|.++++..+++.+. ++.+|.++.+++++.|+|+++||+++|++|+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4466767877 999999999999999999998655 5666666999999999999999999999999985 89999
Q ss_pred CHHHHHHHHhhh
Q 005108 701 SRDMLEHSVRHY 712 (714)
Q Consensus 701 ~~~~l~~~~~~~ 712 (714)
+.+++.++|+.+
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 888998888765
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.5e-09 Score=104.41 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
..++-+.-++.-+..+|++.+-|..+ |.+|...|++..|...|.+++++.|++++++..+|.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~L------------g~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLL------------GRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHH------------HHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 35666777888899999999999988 999999999999999999999999999999999999887754
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 529 ---QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 529 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
...++...++++++++|+++.+++.||..++..|+|.+|+..++..++..|.+..-...+.+.
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 477999999999999999999999999999999999999999999999998876655555443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=4.2e-10 Score=88.10 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE-KWADAVRDFEVLRRELP 579 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 579 (714)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57888999999999999999999999999999999999999999999998 79999999999999887
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.10 E-value=4.6e-11 Score=116.08 Aligned_cols=227 Identities=13% Similarity=0.067 Sum_probs=188.8
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
...-.++..|+++|.|++|+.+|.+.+..+|. ++.++.++|.+|+++.+|..|...++.++.++...
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------------ 164 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY------------ 164 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------------
Confidence 33556788899999999999999999999996 46778889999999999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH-----------------------HHHHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV-----------------------ARARARGN 488 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~-----------------------~~~~~~g~ 488 (714)
..+|..++.+-..+|+..+|.+.++.++.+.|++.+....+..+... ...+..|.
T Consensus 165 --~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~ 242 (536)
T KOG4648|consen 165 --VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGY 242 (536)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcch
Confidence 77889999999999999999999999999999998876665443211 01234577
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
.+++.|.++.++.+|...+..+..+..+..+ +..|.+..++++|+..+.+++..+|......-..+.+-.-+|...++.
T Consensus 243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K 321 (536)
T KOG4648|consen 243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVK 321 (536)
T ss_pred hhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcC
Confidence 7888888888888888877766666555555 788889999999999999999999888777777788888888999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..++.++.+.|.+......+.+....
T Consensus 322 ~~~~T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 322 PTKQTAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred cchhheeeeccccccchhhhhhhccc
Confidence 99999999999988777766554433
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=1.7e-08 Score=99.86 Aligned_cols=173 Identities=14% Similarity=0.079 Sum_probs=139.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR---SNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAH 313 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~ 313 (714)
.++..++..|..++..|+|++|++.|++++...|....+. +.+|.+|++++++++|+..|++.++.+|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 5778899999999999999999999999999999886554 899999999999999999999999999876 5688
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHhhcCCCChHHH-----HHH-----HHHHHHHHHhHHHHHcC
Q 005108 314 QRLGSLLVRLG---------------Q---VENARRHLCLSGQQADPTEV-----HRL-----QVVEKHLSKCTDARKVG 365 (714)
Q Consensus 314 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~-----~~l-----~~~~~~~~~a~~~~~~g 365 (714)
+.+|.++..++ + ..+|+..|++.++..+.... ..+ ...+..+..+..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998865543 1 35788888888873222211 111 12234456778899999
Q ss_pred CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 366 DWKSALREGDAAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
.|..|+.-++.+++..|+. ..+.+..+..+|..+|..++|......+
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998853 4566777999999999999998876543
No 192
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-10 Score=121.91 Aligned_cols=98 Identities=24% Similarity=0.390 Sum_probs=88.8
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.+.|...|.....++|.|+|+||++|+.+.|.+++.+..+ +.+...+||..+..++|.+|+|+++||+.|++|
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 3445789999999999999999999999999999998887766 468899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.....+.|+ ..+.|..|+++.
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhc
Confidence 9987888899 999999999874
No 193
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.08 E-value=7.3e-10 Score=95.95 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=78.5
Q ss_pred HhhhccCCCceEEEeec--CCCccccccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 621 FRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+...+...+..++.|-. .-++.+..+.-+|.++..+|+ . +.|++||+|++++++.+|||+++||+++||||+.+.+
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEE
Confidence 33344455566665554 347788888899999999998 3 8899999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
++|. +.+++.++|+++
T Consensus 107 i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 107 LNGIHPWAELINLMRGL 123 (132)
T ss_pred EeCcCCHHHHHHHHHHH
Confidence 9999 999999999875
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=4.5e-10 Score=87.97 Aligned_cols=68 Identities=35% Similarity=0.574 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDP 307 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 307 (714)
+++..|+.+|..++..|+|++|+.+|+++++.+|+++.+|+++|.++..+| ++++|++.|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999987
No 195
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.08 E-value=2e-10 Score=98.06 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=78.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCcc--ccceEEEEeC--CeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVR--IVPTFKIYKN--GSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~--G~~~~~~~g~-~ 701 (714)
..++++.|+++||++|..+.|.+++++.++.+ +.|++||+++.+.++..|+|. ++|+++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 45889999999999999999999999999965 999999999999999999999 9999999988 8777777777 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+.|.++|+.+
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 196
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=2.3e-08 Score=113.45 Aligned_cols=239 Identities=16% Similarity=0.094 Sum_probs=186.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH-HHHHHHHHHHHHHhHHHHHcCCH
Q 005108 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE-VHRLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~l~~~~~~~~~a~~~~~~g~~ 367 (714)
+++-.+..+.|++.+.-+|+..-.|..+...+++.++.++|.+..++|+...++.+ ...+...-+++ ......|.-
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~l---NlEn~yG~e 1513 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYL---NLENAYGTE 1513 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHH---hHHHhhCcH
Confidence 33344567789999999999999999999999999999999999999998543332 22333333333 334445677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 368 KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 368 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
+...+.|++|-+... ...++..+..+|...+++++|.++|+.+++...+. ..+|..++..++.+
T Consensus 1514 esl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------------~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------------RKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------------hhHHHHHHHHHhcc
Confidence 777888888888753 34567778899999999999999999998877754 66899999999999
Q ss_pred CcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWF 525 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 525 (714)
++-+.|...+++|++.-|. +.+..... +.+.++.|+.+.+..+|+..+.-+|...++|.-+...-.
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~Iskf------------AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKF------------AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHH------------HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 9999999999999998887 44444433 888999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 005108 526 KLGQWERSVEDSNQALLIQ--PNYTKALLRRAASN 558 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 558 (714)
++|+.+.+...|++++.+. |.....+|..=.-|
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 9999999999999998753 44444444433333
No 197
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.07 E-value=1.7e-09 Score=96.87 Aligned_cols=92 Identities=29% Similarity=0.466 Sum_probs=85.8
Q ss_pred ccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 609 GGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 609 ~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.|+..++.+...|........-+|++||-+....|+-+...|+.|+.++.+..|++||++..|.|+..++|+.+|++.+|
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence 35677788777888777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCC
Q 005108 689 KNGSRMKEIVCP 700 (714)
Q Consensus 689 ~~G~~~~~~~g~ 700 (714)
+||+.+++++||
T Consensus 145 k~g~~~D~iVGF 156 (211)
T KOG1672|consen 145 KNGKTVDYVVGF 156 (211)
T ss_pred EcCEEEEEEeeH
Confidence 999999999998
No 198
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.3e-09 Score=99.86 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
.+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++..+|++++|+..|+++++.+|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34577889999999999999999999999999987653 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
.+|.++...|+...+...+++++ ..+++|++.+++++..+|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchh
Confidence 99999999999888877665442 34678888999999988874
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=99.06 E-value=2.5e-09 Score=95.55 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=102.0
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.||..+|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
++|+..|+.+++ .|.+..+.+.-......+++.
T Consensus 122 ~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 122 AKARQCFELVNE-RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred HHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcc
Confidence 999999999998 677777766555555555543
No 200
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=4.7e-10 Score=89.12 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=59.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~~ 708 (714)
.+.||++||++|+.+.|.++++..+++. +.|++|| ..+.+.+|+|.++||+++ ||+.+ +.|. ..++|++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 4789999999999999999999999874 7787777 233478899999999999 99988 6674 66888877
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|+
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
No 201
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=6.5e-09 Score=97.85 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|..+...|++++|+.+|++++...|+....... +..+|.++...|++++|+.+|+++++..|.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYI---------LYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 6778888999999999999999999998877654321111 1234888899999999999999999998888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
...+..+|.+|...|+...+...+++++. .+++|+++++++++.+|++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 88888889999888888887777666543 3788999999999999987
No 202
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2.6e-09 Score=88.88 Aligned_cols=97 Identities=32% Similarity=0.509 Sum_probs=92.0
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+|..+...|++++|+..++++++..|.+..+++.+|.++...+++++|++.|+++++..|.+..++..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 005108 564 WADAVRDFEVLRRELPD 580 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~ 580 (714)
+++|..+++++++.+|+
T Consensus 84 ~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 84 YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999988773
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1e-08 Score=103.62 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDP----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
+......|..|++.|+|..|+..|++++..-. .+.+--... .-.....+.+++.++.++++|.+|+..++++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~-~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKA-EALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHH-HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 55667789999999999999999999886433 111111111 1112344567899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhCCC
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA-VRDFEVLRRELPD 580 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~p~ 580 (714)
+|+|..++|..|.++..+|+|+.|+..|+++++++|+|..+...+..+..+..++.+. .+.|.+++...+.
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999888777665 7788887765543
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=2.7e-08 Score=98.40 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
..+..++..|..+...|++++|++.|++++...|... ....+.+.+|.++++.+++++|+..+++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-----------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-----------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3555666688889999999999999999999999872 11334688899999999999999999999999
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc------------------CHHHHHHHHHHhhccCCCCH-----------
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSE------------------RFTEACQAYGEGLRFDPSNS----------- 514 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g------------------~~~~A~~~~~~al~~~p~~~----------- 514 (714)
+|+++.+-..+.. +|.++...+ ...+|+..|++.++..|+..
T Consensus 99 ~P~~~~~~~a~Y~---------~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~ 169 (243)
T PRK10866 99 NPTHPNIDYVLYM---------RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF 169 (243)
T ss_pred CcCCCchHHHHHH---------HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 9988765443322 244432222 23578899999999999862
Q ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 515 ------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 515 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
.--+..|..|.+.|.|..|+.-++.+++..|+. .++++.+..+|..+|..++|.......
T Consensus 170 l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 170 LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 122346777899999999999999999987765 488889999999999999998876543
No 205
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.02 E-value=7.9e-10 Score=107.77 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=72.8
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.++.||++||++|..+.|.++++..+++++.+.++|.++.++++..|+|+++||++++++|++ +.|. +.++|.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 35666799999999999999999999988889999999999999999999999999999999874 7888 8899999
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 8875
No 206
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.02 E-value=2.8e-10 Score=98.57 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred hhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecc--cCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDID--ESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
...|...+.. ..++++.||++||++|+.+.|.++++..++. .+.|..+|++ ...++++.|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 3456665544 4589999999999999999999999988763 2888899975 4678999999999999999999
Q ss_pred Ce
Q 005108 691 GS 692 (714)
Q Consensus 691 G~ 692 (714)
|.
T Consensus 88 ~~ 89 (114)
T cd02992 88 FS 89 (114)
T ss_pred CC
Confidence 98
No 207
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=5.6e-09 Score=91.61 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...++.+|..+...|++++|++.|++++..+|++. .+++.+ |.++...|++++|+.+|++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWL------------GEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHHC
Confidence 34689999999999999999999999999988763 444444 999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 511 PSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 511 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|++ +.+++.+|.++.++|++++|+..++++++..|++..+..
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 875 678999999999999999999999999999999875543
No 208
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.01 E-value=7.8e-10 Score=117.30 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=78.1
Q ss_pred hhhHHhhhcc---CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc-chh-hhCCccccceEEEEe
Q 005108 617 SLEQFRAAVS---LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP-GVA-HAENVRIVPTFKIYK 689 (714)
Q Consensus 617 ~~e~~~~~i~---~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~-~l~-~~~~v~~~Pt~~~~~ 689 (714)
+.++|+..+. ...+++|+||++||++|+.+.|.++++..++.+ +.|++||+|..+ .++ +.|+|.++|||++|+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 3356777664 567899999999999999999999999999863 889999998754 344 789999999999999
Q ss_pred CCeE-EEEEc-CC-CHHHHHHHHhhh
Q 005108 690 NGSR-MKEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~-~~~~~-g~-~~~~l~~~~~~~ 712 (714)
+|.. ...+. |. +.+.|..+|+-+
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9863 33454 45 999999998754
No 209
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.01 E-value=1.1e-09 Score=99.33 Aligned_cols=84 Identities=13% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC------------cchh-hhC---CccccceEEEE-eC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES------------PGVA-HAE---NVRIVPTFKIY-KN 690 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~------------~~l~-~~~---~v~~~Pt~~~~-~~ 690 (714)
.+..+++||++||++|++..|.++++.+++ ++.++.|++|+. .... ..| +|.++||++++ ++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 446699999999999999999999999988 477777777753 2232 345 89999998777 77
Q ss_pred CeE-EEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSR-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.. +....|. +.++|++.|+++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 765 5678899 999999988764
No 210
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=1.3e-08 Score=111.28 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHhCc---HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh--hCcCHHHHHHHHHHhh
Q 005108 433 EAYTFFVRAQIEMALGR---FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF--KSERFTEACQAYGEGL 507 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~--~~g~~~~A~~~~~~al 507 (714)
.++-++..|..+...++ +++|+.+|+++++++|++..++..+...... ...+. ...+..++.+..++++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~------~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIV------RHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HHhcCCccHHHHHHHHHHHHHhh
Confidence 37777888888876654 8899999999999999998888765221100 00011 1234567777777766
Q ss_pred cc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 508 RF--DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 508 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.+ ++.++.+|..+|..+...|++++|...++++++++|+ ..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7778899999999999999999999999999999995 789999999999999999999999999999999885
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=3.5e-08 Score=95.36 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=117.1
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGAD--FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
...+..+..+...|+|.+|+..|++++...|. ......+.+|.++.+.|++++|+..+++.++..|.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-------- 77 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-------- 77 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------
Confidence 45667778899999999999999999999884 45677888999999999999999999999999999842
Q ss_pred hhhhHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHhccCCCCHHHHHHHHh---H--HHHHHHHHHHhHHhhC
Q 005108 430 MLSEAYTFFVRAQIEMAL-----------GRFENAVTAAEKAGQIDPRNVEVAVLLNN---V--KLVARARARGNDLFKS 493 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~---l--~~~~~~~~~g~~~~~~ 493 (714)
..++++.+|.+++.+ +...+|+..|+..+...|+..-+...... + ..+......|..|++.
T Consensus 78 ---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 78 ---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 255677777776554 33568999999999999988654332211 1 2233344556666666
Q ss_pred cCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWER 532 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 532 (714)
|.|..|+..|+.+++..|+. .+++..++.+|.++|..+.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 66666666666666666654 3455556666666666553
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.00 E-value=2.2e-08 Score=96.76 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
|+..+..++..|..++..|++++|+..|++++...|...- ...+.+.+|.+++..|++++|+..+++.+
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-----------a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-----------APQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445666777999999999999999999999999998632 25678899999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhH-----------HhhCcCHHHHHHHHHHhhccCCCCHH---------------
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGND-----------LFKSERFTEACQAYGEGLRFDPSNSV--------------- 515 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~--------------- 515 (714)
+..|+++.+-..+.. +|.+ ....+...+|+..|+..++..|+...
T Consensus 70 ~~yP~~~~~~~A~Y~---------~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 70 KLYPNSPKADYALYM---------LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HH-TT-TTHHHHHHH---------HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchhhHHHH---------HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 999998654333211 1333 33445567899999999999998732
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHH
Q 005108 516 --LYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADA 567 (714)
Q Consensus 516 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA 567 (714)
--+.+|..|.+.|.|..|+..++.+++..|+.. +++..++.+|.++|..+.|
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 123356667777777777777777777777654 5666777777777776643
No 213
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.99 E-value=8.5e-10 Score=90.12 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=73.4
Q ss_pred CcCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 493 SERFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
.|+|++|+.+|+++++..|. +...++.+|.||++.|+|++|+..+++ ++.++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999985 567888899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 005108 571 FEVL 574 (714)
Q Consensus 571 ~~~a 574 (714)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 214
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.99 E-value=2.9e-08 Score=97.69 Aligned_cols=289 Identities=13% Similarity=0.046 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+. .-.+........+.+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-TARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34566777888899999999998888654332 33455566778888999888775433222 001112234456778
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAG---A-DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~---p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
++++..+.+..++.+++.+-...+.+. + ...-.....++.++..++.++++++.|+++++...++ .+.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--------~D~ 158 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--------DDA 158 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--------CCc
Confidence 888888889999999998887777652 2 2223455668999999999999999999999876554 222
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
+.+..++..++..+..+.++++|+-+..++.++..... .-|. .......++.++..+..+|+.-+|.++++++.++
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~---~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS---LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh---HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33456788999999999999999999999987643221 1111 1112234456799999999999999999999886
Q ss_pred C------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHH-----HHHHHH
Q 005108 510 D------PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------YTKALLRRAASNSKLEKWAD-----AVRDFE 572 (714)
Q Consensus 510 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~ 572 (714)
. +-......-+|.+|...|+.+.|..-|++|....-. ..+++...+.++....-..+ |+++-+
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2 233566778999999999999999999999875321 24566667777766554444 888777
Q ss_pred HHHHhC
Q 005108 573 VLRREL 578 (714)
Q Consensus 573 ~al~~~ 578 (714)
+++++.
T Consensus 316 r~levA 321 (518)
T KOG1941|consen 316 RLLEVA 321 (518)
T ss_pred HHHHHH
Confidence 777764
No 215
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=1.5e-08 Score=95.10 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=99.2
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACW 524 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 524 (714)
..|..+...+.+.++..+.+......+ ..|.++...|++++|+..|++++.+.|+. +.+++++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYY----------RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 445666666666655555554433322 44999999999999999999999887653 46899999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhccHH-------HHHHHHHHHHHhCCCCH
Q 005108 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS-------KLEKWA-------DAVRDFEVLRRELPDDN 582 (714)
Q Consensus 525 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p~~~ 582 (714)
..+|++++|++.|+++++++|.+...+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999999998 777766 56666667777777554
No 216
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.99 E-value=7e-10 Score=94.29 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=71.6
Q ss_pred hhhHHhhhccCCCceEEEeec--CCCccccccchHHHHHHhhC----CCcEEEEEecc-----cCcchhhhCCcc--ccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRY----PSINFLKVDID-----ESPGVAHAENVR--IVP 683 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d-----~~~~l~~~~~v~--~~P 683 (714)
+...|...+.....++|.|++ +||+ + .|..++|+.++ ..+.+.+||++ ++.+|+++|+|. ++|
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 346788888888899999999 7777 2 25555555444 13789999994 567899999999 999
Q ss_pred eEEEEeCCe--EEEEEcC--CCHHHHHHHHhhh
Q 005108 684 TFKIYKNGS--RMKEIVC--PSRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~--~~~~~~g--~~~~~l~~~~~~~ 712 (714)
|+++|++|. ....+.| .+.+.|..+|.+.
T Consensus 83 Tl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 83 VIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999995 3345666 4999999999874
No 217
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=2.1e-08 Score=94.05 Aligned_cols=111 Identities=22% Similarity=0.151 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|++++.++|.+...+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46788999999999999999999999999987653 468999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005108 318 SLLV-------RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS 385 (714)
Q Consensus 318 ~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~ 385 (714)
.++. .+|++++|+.. +++|+..|++++..+|...
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~----------------------------------~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAW----------------------------------FDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHH----------------------------------HHHHHHHHHHHHHhCcccH
Confidence 9998 45555555443 4566778888888888643
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.98 E-value=8e-07 Score=88.66 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=113.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA--AALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+-.+...++..+..|+|++|.+-|+.++. +|.. ..+-.+| ..-..+|..+.|+++.+++-...|.-..++...-
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 3566777788999999999999999998874 3321 2222222 2234689999999999999999999999999888
Q ss_pred HHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
...+..|+|+.|+++.+.... ..++........+ .+..++. ..-.-+...|...-.+++++.|++.+.... -+..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv-LLtAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~-AAra 272 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV-LLTAKAM-SLLDADPASARDDALEANKLAPDLVPAAVV-AARA 272 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH-HHHHHHH-HHhcCChHHHHHHHHHHhhcCCccchHHHH-HHHH
Confidence 889999999999999876543 2222222111111 0111111 112234555666666666666666555544 5566
Q ss_pred HHHcCCHHHHHHHhhccccCCCCC
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
+++.|+..++-.+++.+.+.+|..
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCCh
Confidence 666666666666666666666654
No 219
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.98 E-value=1.2e-09 Score=120.89 Aligned_cols=96 Identities=25% Similarity=0.403 Sum_probs=85.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|..++....+++|.||++||++|+.+.|.+.++...+ +++.|+.||+++..++++.|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 34577777777889999999999999999999999887765 34899999999999999999999999999999999
Q ss_pred E-EEEEcCC-CHHHHHHHHhhh
Q 005108 693 R-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
. +.++.|. +.+.|.++|.+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHh
Confidence 8 7888998 999999998774
No 220
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.4e-09 Score=88.73 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=73.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPR--NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 331 (714)
.+|+|++|+.+|+++++.+|. +..+++.+|.||+++|+|++|+..+++ .+.++.+...++.+|.++.++|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHhh
Q 005108 332 HLCLS 336 (714)
Q Consensus 332 ~~~~a 336 (714)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99764
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.9e-07 Score=99.31 Aligned_cols=294 Identities=17% Similarity=0.072 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
+.-...|....+.|.+++|+.+|.+.-+. -.+-..|...|.+++|.+..+.-=++ .-...|+++|.-+..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHh
Confidence 33344566677788888888888876543 34556778888888888776643222 225678999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChH---HHHHHHHHHHH----------HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 323 LGQVENARRHLCLSGQQADPT---EVHRLQVVEKH----------LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~---~~~~l~~~~~~----------~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
.++.+.|+++|+++-...-.- .......++.+ .--+..+...|+.+.|+.+|..+-. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 999999999999875310000 00001111111 1123344556777777777765432 3
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc------
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI------ 463 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 463 (714)
+.+..+.+-+|+.++|..+.++. . +-.+.|.+|..|...|++.+|+..|.+|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es-----g--------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES-----G--------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc-----c--------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777766655432 1 2456788999999999999999998876432
Q ss_pred CCCC--HHHHHHHHhH------HHHHHHH--------HHHhHHhhCcCHHHHHHHHHH-----hhc-----cCC-CCHHH
Q 005108 464 DPRN--VEVAVLLNNV------KLVARAR--------ARGNDLFKSERFTEACQAYGE-----GLR-----FDP-SNSVL 516 (714)
Q Consensus 464 ~p~~--~~~~~~l~~l------~~~~~~~--------~~g~~~~~~g~~~~A~~~~~~-----al~-----~~p-~~~~~ 516 (714)
-.+| .+-+..+..+ ..+.+++ .-...|.+.|.+.+|++.-=+ +|+ +++ .++.+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1111 1111111111 1111111 112344555666555543211 111 233 36888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH------HHHhC----------------CC---------CHHHHHHHHHHHHHhccHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQ------ALLIQ----------------PN---------YTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~------al~~~----------------p~---------~~~~~~~la~~~~~~g~~~ 565 (714)
+..-+..+....+|++|+..+-. |+++. |. -.+++..+|.++.++|.|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 88888999999999999877644 44331 11 1267888999999999999
Q ss_pred HHHHHHHHH
Q 005108 566 DAVRDFEVL 574 (714)
Q Consensus 566 eA~~~~~~a 574 (714)
.|-+-|.+|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 998887664
No 222
>PTZ00102 disulphide isomerase; Provisional
Probab=98.96 E-value=1.4e-09 Score=120.50 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=84.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+...|...+.....++|.||++||++|+++.|.+.++...+ +++.|+.||+++..+++++|+|.++||+++|++|+
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 34577777777789999999999999999999998887654 35999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ ++.|. +.+.|.++|.++
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHh
Confidence 88 88898 999999999875
No 223
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.96 E-value=6.3e-10 Score=96.56 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEecccCc-chhhhCCccc--cceEEEE-eCCeEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESP-GVAHAENVRI--VPTFKIY-KNGSRM 694 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd~d~~~-~l~~~~~v~~--~Pt~~~~-~~G~~~ 694 (714)
.+..+.....+++|+||++||++|+.+.|.+.+..... ....|+.||++..+ .+...|++.+ +||+++| ++|+++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 34445556779999999999999999999998876544 24578888888765 4567899987 9999999 699998
Q ss_pred EEEcCC
Q 005108 695 KEIVCP 700 (714)
Q Consensus 695 ~~~~g~ 700 (714)
.++++.
T Consensus 91 ~~~~~~ 96 (117)
T cd02959 91 PEIINK 96 (117)
T ss_pred hhhccC
Confidence 865544
No 224
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.95 E-value=2.7e-08 Score=99.58 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----------cchhhhCCccccceEEEEeC-CeEEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----------PGVAHAENVRIVPTFKIYKN-GSRMK 695 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~~~-G~~~~ 695 (714)
...++|+||++||++|+.+.|.|+.+..+|. +.++.|++|.. ..+++.|+|..+|++++++. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4589999999999999999999999999985 77778887763 46889999999999999954 66665
Q ss_pred E-EcCC-CHHHHHHHHhhh
Q 005108 696 E-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~-~~g~-~~~~l~~~~~~~ 712 (714)
. ..|. +.++|.+.|...
T Consensus 245 ~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 4 4588 999999888754
No 225
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.95 E-value=8.5e-09 Score=85.67 Aligned_cols=99 Identities=29% Similarity=0.542 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+++.+|.++...|++++|+..++++++..|.+..++..+ |.++...+++++|+++|+++++..|.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL------------AAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 478899999999999999999999999999988776655 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+..+|.++...|++++|...++++++..|+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999988773
No 226
>PLN02309 5'-adenylylsulfate reductase
Probab=98.95 E-value=1.9e-09 Score=114.31 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred hhHHhhhc---cCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-cCcchhh-hCCccccceEEEEeC
Q 005108 618 LEQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-ESPGVAH-AENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i---~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-~~~~l~~-~~~v~~~Pt~~~~~~ 690 (714)
.++|+..+ ...++++|+||++||++|+.+.|.++++..++. ++.|++||++ ...+++. .|+|.++|||++|++
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~ 431 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPK 431 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeC
Confidence 35666554 457799999999999999999999999999985 4999999999 7777886 699999999999988
Q ss_pred CeEE-EEEc-CC-CHHHHHHHHhhh
Q 005108 691 GSRM-KEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~-~~~~-g~-~~~~l~~~~~~~ 712 (714)
|... ..+. |. +.+.|..||+.+
T Consensus 432 g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 432 NSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8643 3454 34 999999999865
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.94 E-value=3.2e-06 Score=82.94 Aligned_cols=91 Identities=25% Similarity=0.381 Sum_probs=46.4
Q ss_pred HhhCcCHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 490 LFKSERFTEACQAYGEGLRFDPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+...+++++|+..+.+++...+. ....+..++.++...+++++|+..+.+++...|.....+..++..+...++++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 44445555555555555555544 34555555555555555555555555555555544444444444444444455555
Q ss_pred HHHHHHHHhCCC
Q 005108 569 RDFEVLRRELPD 580 (714)
Q Consensus 569 ~~~~~al~~~p~ 580 (714)
..+.++++..|.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 555555555544
No 228
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.94 E-value=3.2e-09 Score=86.87 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=65.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.+.+..|+++||+.|....+.++++...++++.|..+|+++.+++++.|+|+++|++++ ||+.+.+ |. +.+++
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 36688899999999999999999999999999999999999999999999999999964 9987774 75 66654
No 229
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.94 E-value=2.3e-09 Score=83.25 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=56.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
.++.|+++||++|+.+.+.++++...++++.|..+|+++.++++..|+|.++||+++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 467899999999999999999998888889999999999999999999999999865 66544
No 230
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=3e-07 Score=104.73 Aligned_cols=237 Identities=15% Similarity=0.062 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHcCCHHHHHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL-DPNY----WRAHQRLGSLLVRLGQVENARRH 332 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~g~~~~A~~~ 332 (714)
-.+-.+.|++.+.-+|+....|...-.-++++++.++|.+.+++|+.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334567788999999999999999999999999999999999999873 3332 44565555666666777778888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 333 LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 333 ~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
|++|.+..++. ..|..+..+|...+.+++|.++|+.+++..- .....|..++..++++.+-+.|...+.+|
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 98887655544 3466777889999999999999999999876 46778888999999999999999999999
Q ss_pred ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 413 l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
++.-|.. .-.......|++.++.|+.+.+..+|+..+..+|.-.+.|..+ ...-.+
T Consensus 1591 L~~lPk~------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik 1646 (1710)
T KOG1070|consen 1591 LKSLPKQ------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIK 1646 (1710)
T ss_pred Hhhcchh------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHc
Confidence 9998884 1155677789999999999999999999999999999999988 778899
Q ss_pred CcCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHh
Q 005108 493 SERFTEACQAYGEGLRF--DPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 527 (714)
.|+.+.+..+|++++.+ .+.....++..=.-|.+.
T Consensus 1647 ~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999999999876 455555555555445443
No 231
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=103.48 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=80.0
Q ss_pred eehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 614 EVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 614 ~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
.+..++.......+.++++|+|+|+||.+|+++.|+.+++--.+.+ +++.+.|...-+.+|..|+|+++||++++|
T Consensus 29 ~VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEec
Confidence 3344443333445678999999999999999999999998766643 778899999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|..++-..|..++.|.++-.+.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhc
Confidence 99976654444999888876654
No 232
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=3.3e-09 Score=81.87 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
.+|..+++.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3555566666666666666666666666666666666666666666666666666666666543
No 233
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.93 E-value=2.3e-09 Score=115.30 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEE----------------------------ecccCcchhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKV----------------------------DIDESPGVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~v----------------------------d~d~~~~l~~~ 676 (714)
..++++|+|||+||++|+...|.|+++..++. ++.|+.| ++|....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 56789999999999999999999999999875 4666544 33445678899
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+|+++||++|+ ++|+++.++.|. +.++|+.+|+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999998655 999999999999 99999999884
No 234
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=4e-08 Score=89.51 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN--- 513 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--- 513 (714)
.+..+......++...+...+++.+...|+........ ..+|.+++..|++++|+..|++++...|+.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~---------l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAA---------LQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH---------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 33444444468999999999999999999884332222 135999999999999999999999987655
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
..+.+.+|.++...|++++|+..++.. .-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 467888999999999999999999773 3344456788899999999999999999999875
No 235
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=2.5e-08 Score=99.29 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=93.4
Q ss_pred HhHH-hhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005108 487 GNDL-FKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNS 559 (714)
Q Consensus 487 g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 559 (714)
+..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.++.
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 5554 66799999999999999999988 5899999999999999999999999999988874 689999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
.+|++++|+..|+++++.+|+.........+
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999998876554433
No 236
>PTZ00102 disulphide isomerase; Provisional
Probab=98.92 E-value=2.9e-09 Score=118.10 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=83.5
Q ss_pred hhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
...|... +..++.++|.||++||++|+.+.|.++++...+. .+.++++|++.+..++..|+|+++||+++|++|+.
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER 443 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence 3556665 4566789999999999999999999999988875 38899999999999999999999999999988876
Q ss_pred E-EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M-KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~-~~~~g~-~~~~l~~~~~~~~ 713 (714)
+ .++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 444 TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ceeEecCcCCHHHHHHHHHHcC
Confidence 6 478898 9999999998864
No 237
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.92 E-value=1.6e-09 Score=120.32 Aligned_cols=100 Identities=12% Similarity=0.244 Sum_probs=81.7
Q ss_pred eehhhhHHhhhc----cCCCceEEEeecCCCccccccchHH---HHHHhhCCCcEEEEEecccC----cchhhhCCcccc
Q 005108 614 EVSSLEQFRAAV----SLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYPSINFLKVDIDES----PGVAHAENVRIV 682 (714)
Q Consensus 614 ~i~~~e~~~~~i----~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~ 682 (714)
.+.+.+++++.+ ..+++++|+||++||++|+.+.+.+ .++.+++.++.++++|++++ .+++++|+|.++
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 344555555544 3357899999999999999998865 66777778899999999863 578999999999
Q ss_pred ceEEEE-eCCeEE--EEEcCC-CHHHHHHHHhhhc
Q 005108 683 PTFKIY-KNGSRM--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 683 Pt~~~~-~~G~~~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
||+++| +||+++ .++.|. +.+++.+.|+++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999 589984 688998 9999999998763
No 238
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=1.7e-08 Score=103.03 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C----c
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAP--RN----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDP--N----Y 309 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~ 309 (714)
++.+...|+.|...++|++|.++|.++.+..- ++ ...+...+.+|.+. ++++|+.+|++++.+.- + -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778889999999999999999999977532 12 45666677777666 99999999999998631 1 2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 005108 310 WRAHQRLGSLLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---- 384 (714)
Q Consensus 310 ~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---- 384 (714)
...+..+|.+|... |++++|+++|++++....... ........+...+.++...++|++|++.|+++....-+.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 66889999999998 999999999999987222221 122344566778888999999999999999998864321
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH--hCcHHHHHHHHHHH
Q 005108 385 --SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA--LGRFENAVTAAEKA 460 (714)
Q Consensus 385 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 460 (714)
...++...+.|++..|++..|...+++....+|....+.. ......+...+.. ...+++|+..|++.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E---------~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE---------YKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH---------HHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH---------HHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1245566788999999999999999999999987633322 3333333344333 45688888888887
Q ss_pred hccCC
Q 005108 461 GQIDP 465 (714)
Q Consensus 461 l~~~p 465 (714)
..+++
T Consensus 264 ~~ld~ 268 (282)
T PF14938_consen 264 SRLDN 268 (282)
T ss_dssp S---H
T ss_pred CccHH
Confidence 77665
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=2.1e-06 Score=84.25 Aligned_cols=255 Identities=26% Similarity=0.306 Sum_probs=198.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 262 LSMYDKAISLAPRNAAFRSNRAAALTG-LGRIGEAVKECEEAVRLDPN--YWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 262 l~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
.....................+..... .+.+..+...+..++...+. .......++..+...+++..+...+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (291)
T COG0457 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE 87 (291)
T ss_pred HHHHhHHHHhChhhHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 334444444444444444444444444 57888999999999988876 478889999999999999999999988764
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHhhccccCCC
Q 005108 339 QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE-ALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 339 ~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p 417 (714)
. .........+...+..+...+++..++..+.+++...+.... ....... ++...+++++|...+.+++...+
T Consensus 88 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 88 L-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred h-----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 112233356677788888999999999999999998776422 2222444 89999999999999999988666
Q ss_pred C-CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-CHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 418 S-TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-NVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 418 ~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
. . .....+...+..+...+++++|+..+.+++...+. ....+..+ +..+...++
T Consensus 162 ~~~------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 217 (291)
T COG0457 162 ELN------------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNL------------GLLYLKLGK 217 (291)
T ss_pred Ccc------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHh------------hHHHHHccc
Confidence 3 1 12566777777788899999999999999999998 46655544 888999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+++|+..+.+++...|.....+..++..+...++++++...+.++++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999987788888888888888899999999999999887
No 240
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-08 Score=98.23 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=107.9
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+.++.+.-++.-+..+|++ +.-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d--------------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~------ 196 (287)
T COG4235 137 EMEALIARLETHLQQNPGD--------------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL------ 196 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC--------------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHH------
Confidence 3556666777788889998 88999999999999999999999999999999999999877
Q ss_pred HHHHHHHhHHhhC---cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 481 ARARARGNDLFKS---ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 481 ~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
|.+++.+ ..-.++...|+++++.+|.+..+.+.||..+++.|+|.+|+..++.+++..|.+.
T Consensus 197 ------aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 197 ------AEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ------HHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5555543 3456899999999999999999999999999999999999999999999877654
No 241
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.90 E-value=4.6e-09 Score=99.79 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----------------------chhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----------------------GVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----------------------~l~~~~~v~~~P 683 (714)
..++++++||++||++|+...|.++++..+ ++.++.|++++.+ .++..|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 456899999999999999999999998754 6788888765422 245578999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+++ ++|+++.+..|. +.+.|+..|+.+
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 76555 899999999999 999888888764
No 242
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.90 E-value=4.2e-09 Score=81.28 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (714)
+.+|..++..|+|++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999864
No 243
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=1.1e-07 Score=86.60 Aligned_cols=94 Identities=23% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQR 315 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 315 (714)
+...+......+..++...+...+++.++.+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3445556666667999999999999999999988 6678889999999999999999999999877654 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 005108 316 LGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~ 335 (714)
++.++...|++++|+..++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999988855
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=98.88 E-value=2.1e-08 Score=89.69 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
+.++.-+..+..|..++..|++++|..+|.-....+|.+.+.|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCC
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQAD 341 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~ 341 (714)
|.||..+|+.+.|+..|+.++....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987433
No 245
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.87 E-value=3.2e-08 Score=97.90 Aligned_cols=103 Identities=28% Similarity=0.454 Sum_probs=82.2
Q ss_pred cceeeehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+...+.|..++.. ...+||+||.+.++.|..+...|..|+.+||.++|++|..+..+ +...|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 356667777778777754 23689999999999999999999999999999999999998877 78899999999999
Q ss_pred EEeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
+|++|..+..++|+ +.+.|+.+|.+++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999999998876 3357888888776
No 246
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.86 E-value=2.1e-09 Score=102.90 Aligned_cols=93 Identities=23% Similarity=0.372 Sum_probs=82.4
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhh----CCC--cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGR----YPS--INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~----~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+++..++....+++|.|+|.||+..+++.|++++.+.. +|+ +.+.+||++....++.+|.|..+||+.+++||.
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~ 83 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE 83 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccc
Confidence 35566777788999999999999999999999887665 464 778899999999999999999999999999999
Q ss_pred EEE-EEcCC-CHHHHHHHHhh
Q 005108 693 RMK-EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 693 ~~~-~~~g~-~~~~l~~~~~~ 711 (714)
.+. ++.|. +.+.|.++|++
T Consensus 84 ~~~rEYRg~RsVeaL~efi~k 104 (375)
T KOG0912|consen 84 MMKREYRGQRSVEALIEFIEK 104 (375)
T ss_pred hhhhhhccchhHHHHHHHHHH
Confidence 998 68888 99999999876
No 247
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.85 E-value=5.3e-08 Score=106.64 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=107.3
Q ss_pred HHHHHHHcCC---HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------CcHHHHHHHHHHH
Q 005108 392 RVEALLKLHQ---LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--------GRFENAVTAAEKA 460 (714)
Q Consensus 392 la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 460 (714)
.|..|...+. +++|+.+|+++++++|++ +.+|-.++.++... .+..++.+..+++
T Consensus 345 rg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--------------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 345 QAHHYLNSGDAKSLNKASDLLEEILKSEPDF--------------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 5555555444 779999999999999998 77777777766553 2345666777776
Q ss_pred hcc--CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 461 GQI--DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 461 l~~--~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
+.+ ++.++.++..+ |..+...|++++|...|++++.++| +..+|..+|.++...|++++|++.|+
T Consensus 411 ~al~~~~~~~~~~~al------------a~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 411 VALPELNVLPRIYEIL------------AVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhcccCcCChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 664 67777777655 7778889999999999999999999 58899999999999999999999999
Q ss_pred HHHHhCCCCHH
Q 005108 539 QALLIQPNYTK 549 (714)
Q Consensus 539 ~al~~~p~~~~ 549 (714)
+|++++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999999874
No 248
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.84 E-value=9.8e-09 Score=96.48 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec-----------------------ccCcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI-----------------------DESPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~-----------------------d~~~~l~~~~~v~~~P 683 (714)
..++++++||++||++|+...|.++++..+ ++.++.|+. |....+++.|+|.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 456899999999999999999999998764 355555554 3344677899999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.+..|. +.+++++.|..+
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 65555 899999999998 999999988775
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=8.7e-08 Score=99.45 Aligned_cols=146 Identities=14% Similarity=-0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhC---cHHHHHHHHHHHh---ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 436 TFFVRAQIEMALG---RFENAVTAAEKAG---QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 436 ~~~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
.++.+|...+..+ ..+.|+.+|.+++ +++|+...++..+..+.....+. |..- ......+|....++++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~--g~~~-~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH--GKSE-LELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHHHHhc
Confidence 4466666665554 3678999999999 99999999888773332211111 1111 345667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+++..|.+....|+.++|++.++++++++|.-..+
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976543
No 250
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=8.5e-08 Score=86.89 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..-|.-++..|+|++|..-|..||.+-|....-...+ .+.++|.+++++++++.|+..+.++|+++|.+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsI-------ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSI-------LYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHH-------HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh
Confidence 44566778899999999999999999999988765422211 23467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
..++..+|.+|.++..|++|++.|+++++++|...++.-..+.+
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999999999999876555444433
No 251
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.83 E-value=4.1e-06 Score=92.22 Aligned_cols=291 Identities=14% Similarity=0.042 Sum_probs=190.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 251 ELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 251 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
-....++|.+|+..+.+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 35577899999999999999999999999999999999999999998888877778888899999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH------
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED------ 404 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~------ 404 (714)
.+|+++++..+.. +..+.+-.+|.+.+.|.+-.+.--+..+..|.....+|..+..++......++
T Consensus 98 ~~Ye~~~~~~P~e--------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 98 HLYERANQKYPSE--------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHhhCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999744432 12333344466667776666555556667777666666655555554444333
Q ss_pred ---HHHHhhccccCC-CCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH-HhccCCCCHHHHHHHHhHHH
Q 005108 405 ---AESSLSNIPKIE-PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK-AGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 405 ---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~l~~ 479 (714)
|...+++.++.. +-. . .+.+ ...-.++..+|++++|.+.+.. ..+..+.........
T Consensus 170 l~LA~~m~~~~l~~~gk~~----------s--~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~----- 231 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIE----------S--EAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK----- 231 (932)
T ss_pred HHHHHHHHHHHhccCCccc----------h--HHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH-----
Confidence 444555555544 111 1 1221 2223566778999999999943 333333333222221
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHH-------------HHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN-------------RAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....+...++|.+-.+...+++...+++..+|.. .+..+...+..+..++..++.+.....
T Consensus 232 ------~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R 305 (932)
T KOG2053|consen 232 ------KLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR 305 (932)
T ss_pred ------HHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc
Confidence 2666778888888888888888888877322222 112222334455555555555544222
Q ss_pred CH-HHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 547 YT-KALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 547 ~~-~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
.+ -+++.+-.-+...|+.+++.-.|-+
T Consensus 306 gp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 306 GPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 22 3333343344566888887665544
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=1.6e-07 Score=97.48 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=125.2
Q ss_pred HHHHHHHhhccc---cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh---------CcHHHHHHHHHHHhccCCCCHH
Q 005108 402 LEDAESSLSNIP---KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL---------GRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 402 ~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.+.|+.+|.+++ +++|.. +.+|..++.+++.. ....+|.++.+++++++|.++.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~--------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLK--------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHHHHHHhhcccCCccc--------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH
Confidence 457888888999 888887 66777777777654 3467899999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
++..+ |.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..
T Consensus 340 a~~~~------------g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 340 ILAIM------------GLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHH------------HHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 98877 888999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHH
Q 005108 550 ALLRRAAS-NSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 550 ~~~~la~~-~~~~g~~~eA~~~~~~al~ 576 (714)
+-...-.+ .+-....++|+..|-+--+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 55444444 4445677888888765443
No 253
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.82 E-value=5e-09 Score=91.17 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=65.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHH--H-HHHhhC-CCcEEEEEecccCcchhh--------hCCccccceEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYV--E-TLCGRY-PSINFLKVDIDESPGVAH--------AENVRIVPTFK 686 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l--~-~l~~~~-~~~~~~~vd~d~~~~l~~--------~~~v~~~Pt~~ 686 (714)
+.+..+...+++++++|++.||+.|+.+.+.+ + ++...+ .++.+++||+++.+++++ .|++.++|+++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 44566667788999999999999999997622 2 344443 468899999999888865 35899999999
Q ss_pred EE-eCCeEEEEEcCC
Q 005108 687 IY-KNGSRMKEIVCP 700 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~ 700 (714)
|+ .+|+++.+..++
T Consensus 86 fl~~~G~~~~~~~~~ 100 (124)
T cd02955 86 FLTPDLKPFFGGTYF 100 (124)
T ss_pred EECCCCCEEeeeeec
Confidence 99 999999887766
No 254
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.2e-06 Score=91.51 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=183.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH------------HHHHhcCCCcHHHHHHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC------------EEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~a~~~la~~ 319 (714)
|...|+.+.|.+..+-+ ....+|-++|....+..+.+-|.-++ +++.+ +++ +.-...|.+
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHH
Confidence 44678888887766544 24468888888888877776665544 33332 333 333456777
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
...+|..++|+..|.+.- .+--+-..|...|.|++|++..+.--.+ .....|++.|.-+...
T Consensus 810 AieLgMlEeA~~lYr~ck---------------R~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCK---------------RYDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHHH---------------HHHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhh
Confidence 888999999999997762 1111223377889999998876643332 2345567788889999
Q ss_pred CCHHHHHHHhhccc----------cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC----
Q 005108 400 HQLEDAESSLSNIP----------KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP---- 465 (714)
Q Consensus 400 g~~~~A~~~~~~al----------~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 465 (714)
++.+.|+++|+++- ..+|.. ..++.....+...|...|+.+...|+.+.|+.+|..|-....
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~----~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQ----IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHH----HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 99999999999863 222222 122222334455677789999999999999999998754221
Q ss_pred -----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc------cCCCC---HHH-----------HHHH
Q 005108 466 -----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR------FDPSN---SVL-----------YCNR 520 (714)
Q Consensus 466 -----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~---~~~-----------~~~l 520 (714)
+-..+-..-..-......+.+|..|...|++.+|+..|.+|-. +...| ..+ ....
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 1111111111112223344568999999999999998876543 32222 011 1112
Q ss_pred HHHHHHhC-CHHHHHHHHHHH------HH-----------------hCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 521 AACWFKLG-QWERSVEDSNQA------LL-----------------IQP-NYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 521 a~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
|..|...| +...|+..|.+| ++ ++| .++..+.+.+..+....+|++|+.++-.+.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444 555555554432 11 233 367788888899999999999988765543
No 255
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.80 E-value=1e-08 Score=91.23 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------cccCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD-----------------------IDESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd-----------------------~d~~~~l~~~~~v~~~Pt 684 (714)
.++++++||+.||+.|+...|.++++..++ ++.++.|+ +|....+++.|+|..+|+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 568999999999999999999999998876 36666555 344567788999999996
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHH
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l 705 (714)
.+++ ++|+++.+..|. +.+.|
T Consensus 104 ~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEEECCCceEEEEEeccCChHhc
Confidence 5555 899999999998 76654
No 256
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.80 E-value=4.9e-09 Score=90.99 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHH---HhhCC-CcEEEEEecccC--------------------cchhhhCCcccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETL---CGRYP-SINFLKVDIDES--------------------PGVAHAENVRIV 682 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l---~~~~~-~~~~~~vd~d~~--------------------~~l~~~~~v~~~ 682 (714)
+....++.|+++||+.|+.+.+.+... ...+. ++.++.++++.. .++++.|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 456889999999999999999988854 33332 578888888763 358999999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
||++++ ++|+++.++.|. +.++|.+.|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999 699999999999 999998765
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=2.3e-07 Score=85.27 Aligned_cols=192 Identities=14% Similarity=0.041 Sum_probs=140.3
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..|...|-+.-|.--|.+++.+.|+ .+.+++.+|..+...|+++.|.+.|+..++++|.+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y------------ 132 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------------ 132 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc------------
Confidence 44666777788999999999999999999998 57778889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH-Hhhc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARARARGNDLFKSERFTEACQAYG-EGLR 508 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~-~al~ 508 (714)
-++..++|..++.-|++.-|.+.+.+..+.+|+++- .|..+ -...-+..+|...+. ++..
T Consensus 133 --~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl---------------~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 133 --NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL---------------NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred --hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH---------------HHhhCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999874 33322 122345666665543 4443
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN-------YTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+ +...-|+.... .+|+..+ ...++++..-..+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 196 ~d-~e~WG~~iV~~---yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 196 SD-KEQWGWNIVEF---YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cc-HhhhhHHHHHH---HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33 22222222221 2232211 1122222222222 24788999999999999999999999888654
No 258
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.78 E-value=1.5e-07 Score=98.44 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
--.+..++...++++.|+++|++..+.+|+ +...+ +.++...++..+|++.+.++++..|.+..+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~L------------A~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLL------------ARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHH------------HHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 334456666778999999999999998876 33333 788888999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+...+..+.+.++++.|++..++++++.|++...|+.|+.+|..+|++++|+..++.+=
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999998776543
No 259
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.78 E-value=8.9e-09 Score=92.09 Aligned_cols=69 Identities=17% Similarity=0.352 Sum_probs=57.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---------CcEEEEEecccC-------------------------cch
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---------SINFLKVDIDES-------------------------PGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---------~~~~~~vd~d~~-------------------------~~l 673 (714)
.++++++|||+||++|++..|.|.++..++. ++.++.|+.|+. ..+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 5699999999999999999999999876442 478888887751 146
Q ss_pred hhhCCccccceEEEE-eCCeEEEE
Q 005108 674 AHAENVRIVPTFKIY-KNGSRMKE 696 (714)
Q Consensus 674 ~~~~~v~~~Pt~~~~-~~G~~~~~ 696 (714)
+..|+|.++|+++++ ++|+++.+
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 779999999998888 89998875
No 260
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.77 E-value=2.4e-08 Score=92.00 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=66.4
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------------cchhhhCCc--cccceEEEE-eCCeEE-
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------------PGVAHAENV--RIVPTFKIY-KNGSRM- 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------------~~l~~~~~v--~~~Pt~~~~-~~G~~~- 694 (714)
+|.||+.||++|++..|.++++.++|. +.++-|++|+. ..+...|++ ..+|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 778999999999999999999999984 77877777753 125568885 699988777 999987
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
...+|. +.++|++.|+.+
T Consensus 152 ~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTV 170 (181)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 578899 999998888764
No 261
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2e-05 Score=74.88 Aligned_cols=233 Identities=18% Similarity=0.181 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------------------WRAHQRLGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~ 335 (714)
...+|..+-.++.++..+++|...+...-++|..+ .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35678888889999999999998888776665221 11233445566666776666554433
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc
Q 005108 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVGDW-KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK 414 (714)
Q Consensus 336 al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (714)
. ..+......-.+.+.. +..++.+++-+. .+.++++.++.-.++|.-.+..++++++
T Consensus 148 L---------------~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 L---------------KTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred H---------------HHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 2 1222221112223332 455555555443 3456688999999999999999999999
Q ss_pred CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc
Q 005108 415 IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE 494 (714)
Q Consensus 415 ~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g 494 (714)
.+|.. +......++.+.++.|+.+.|..+|++.-+....-.... ......++.+.++.-.+
T Consensus 206 ~~~e~-------------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q------~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 206 YYPEQ-------------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ------GKIMVLMNSAFLHLGQN 266 (366)
T ss_pred hCCcc-------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc------hhHHHHhhhhhheeccc
Confidence 88553 266788899999999999999999986543211100000 01112335588888999
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
+|.+|...|.+++..+|.++.+.++.|.|+..+|+..+|++.++.+++..|...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999999988743
No 262
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=2e-07 Score=80.46 Aligned_cols=95 Identities=24% Similarity=0.192 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN---YWRAHQRL 316 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 316 (714)
.+++.+|..+-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568889999999999999999999999976544 678999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHhhc
Q 005108 317 GSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al 337 (714)
+.++...|++++|+..+..++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999886554
No 263
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.75 E-value=1.3e-07 Score=98.84 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 470 (714)
.+...+...++++.|+..++++.+.+|+. ...++.++...++..+|+..++++++..|.+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 35666777889999999999999988763 5568999999999999999999999999999777
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
+... +..+...++++.|+++.+++++..|++...|+.|+.+|.++|++++|+..++.+-
T Consensus 237 L~~Q------------a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQ------------AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7654 8889999999999999999999999999999999999999999999998887543
No 264
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3.6e-08 Score=76.82 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=62.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
++..|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...+++++..+|++..++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777753
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.74 E-value=3.4e-06 Score=81.02 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGA--DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
..++..+....+.|+|++|+..|+++....| .........++.++++.+++++|+..+++.+.+.|.++.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-------- 106 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-------- 106 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--------
Confidence 4567777778899999999999999999988 345778888999999999999999999999999999853
Q ss_pred hhhhHHHHHHHHHHHHHh--------CcHHHHHHHHHHHhccCCCCHHHHHH-----HHhHHHHHHHHHHHhHHhhCcCH
Q 005108 430 MLSEAYTFFVRAQIEMAL--------GRFENAVTAAEKAGQIDPRNVEVAVL-----LNNVKLVARARARGNDLFKSERF 496 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~l~~~~~~~~~g~~~~~~g~~ 496 (714)
..++++..|.+++.. .-..+|+..|+..+...|+..-+-.. ..+...+..-...|..|.+.|.|
T Consensus 107 ---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 107 ---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred ---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 366778888777653 23567888889999999987433221 11112222333344444455555
Q ss_pred HHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVE 535 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 535 (714)
..|+.-++++++..|+. .+++..+..+|..+|-.++|.+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 55554444444443332 2333344444444444444433
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=6.2e-07 Score=82.49 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
.+.|+.+|.-+...|+.++|...|+-++..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4678889999999999999999998887643
No 267
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=2.4e-07 Score=92.36 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=92.8
Q ss_pred HHHHHHHHHHH-HHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 434 AYTFFVRAQIE-MALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 434 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
...++..+..+ +..|+|++|+..|++.++..|+.. .+++.+ |.+|+..|++++|+..|+++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~L------------G~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWL------------GQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777766 567999999999999999999984 566554 99999999999999999999988
Q ss_pred CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 510 DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 510 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.|++ +++++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 210 yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 8774 78999999999999999999999999999999987443
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.73 E-value=5e-05 Score=76.17 Aligned_cols=291 Identities=19% Similarity=0.120 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHc
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRN--AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRL 323 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~ 323 (714)
..|.+....|+-..|.+.-.++-++-..+ +-++..-++.-...|+++.|.+-|+.++. +|.. .-.+..|-.-..++
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34555555666666666666665433333 33444446666666777777777776654 2321 11122222223456
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG---ADFS----PQLSMCRVEAL 396 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~---p~~~----~~~~~~la~~~ 396 (714)
|..+.|+.+-+.+......-.|.....++. .+..|+|+.|++..+...... ++.. ..++...+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~-------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEA-------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHH-------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 677777766666655444433333333322 445677777777666544321 1110 11111112111
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
. .-+...|...-.++.++.|+. .-.-..-+..+++.|+..++-.+++.+-+.+|.. +++.
T Consensus 241 l-dadp~~Ar~~A~~a~KL~pdl--------------vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~---- 300 (531)
T COG3898 241 L-DADPASARDDALEANKLAPDL--------------VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL---- 300 (531)
T ss_pred h-cCChHHHHHHHHHHhhcCCcc--------------chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH----
Confidence 1 224556666666666666665 3344455666677777777777777776666643 2222
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHH-HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEA-CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
..++.+.|+-... ++-.++...+.|++.+..+.++..-+..|++..|...-+.+....|.. .++..++
T Consensus 301 ----------lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlA 369 (531)
T COG3898 301 ----------LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLA 369 (531)
T ss_pred ----------HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHH
Confidence 1223333432211 122233334566677777777777777777777777777776666653 4555566
Q ss_pred HHHHHh-ccHHHHHHHHHHHHH
Q 005108 556 ASNSKL-EKWADAVRDFEVLRR 576 (714)
Q Consensus 556 ~~~~~~-g~~~eA~~~~~~al~ 576 (714)
.+-... |+-.+....+-++++
T Consensus 370 dIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhc
Confidence 665443 666666666666665
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.7e-06 Score=78.95 Aligned_cols=231 Identities=18% Similarity=0.108 Sum_probs=161.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--DPNYWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la 317 (714)
.+.+....+.+.|+..|.+..-+......- .....+...++..+..-++.++-+....+.+.. +..+...+..-|
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 677788888999999999887666554432 122344555565555556655555555444432 223334555666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...+++++|++...... ..+....-..++.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----------------------------------------------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----------------------------------------------NLEAAALNVQILL 148 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----------------------------------------------hHHHHHHHHHHHH
Confidence 77888888888888764421 1122233456778
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
++.+++-|.+.++++.+++.+. ++..+|..+.. -+++.+|.-+|++.-+..+..+.....
T Consensus 149 k~~r~d~A~~~lk~mq~ided~----------------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDA----------------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHH----------------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence 8888899999999888877664 34444444443 346889999999988866666655543
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCCH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE-DSNQALLIQPNYT 548 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~ 548 (714)
. +.+...+++|++|...++.++..++++++.+.|+..+-..+|.-.++.. .+.+....+|+++
T Consensus 213 ~------------Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 213 Q------------AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred H------------HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 3 8899999999999999999999999999999999999999998877665 4455556778775
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.70 E-value=5.6e-07 Score=75.78 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=88.5
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT----KALLRRAASNSK 560 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~ 560 (714)
..|..+...|+.+.|++.|.+++.+.|..+.+|++++..+.-+|+.++|++.+++++++.-+.. .++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999865443 678999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCC
Q 005108 561 LEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~ 581 (714)
+|+.+.|...|+.+-++....
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHH
Confidence 999999999999998886543
No 271
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-07 Score=88.55 Aligned_cols=112 Identities=26% Similarity=0.448 Sum_probs=99.8
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
..+...|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++++|+.+...+.++++++|+...+++.+|.++..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 005108 561 LEKWADAVRDFEVLRREL-----PDDNEIAESLFHAQ 592 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~-----p~~~~~~~~L~~~~ 592 (714)
...|++|+..++++..+. +.-.++...|..++
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999997653 22345666666554
No 272
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=4.7e-06 Score=74.97 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=126.5
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-cCCCCHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-IDPRNVEVA 471 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~ 471 (714)
.....+.=+.+..+....+.++..|.. ...+.++..+.++|++.||...|++++. +.-+++..+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv---------------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l 127 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV---------------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML 127 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH---------------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH
Confidence 334444455666666666666666663 4578899999999999999999999984 566777666
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
..+ ++..+..+++..|...+++..+.+|. .+.....+|..|..+|++++|...|+.++...|+ +.
T Consensus 128 Lgl------------A~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ 194 (251)
T COG4700 128 LGL------------AQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQ 194 (251)
T ss_pred HHH------------HHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HH
Confidence 554 89999999999999999999999875 3778888999999999999999999999999987 67
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+...++..+.++|+.++|...|....
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88889999999999888876665443
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.66 E-value=6.9e-07 Score=78.31 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=93.1
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 558 (714)
..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|++.+++++|+..+++-++++|.++ .+++..|.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 45899999999999999999999987765 68899999999999999999999999999999876 7789999999
Q ss_pred HHhcc---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 559 SKLEK---------------WADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 559 ~~~g~---------------~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
+.+.. ..+|...|+++++..|+...+...
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 99877 899999999999999998876654
No 274
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.66 E-value=6.4e-08 Score=75.38 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 525 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++.|++++|++.|+++++.+|++..+++.++.+|.+.|++++|...+++++..+|+++.+...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555444443
No 275
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.5e-07 Score=74.53 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
..+|...++|++|+++++++++++|+++..++.+|.++..+|++++|++.|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666666666655443
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.65 E-value=5.8e-07 Score=87.06 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=94.1
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNS 559 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 559 (714)
.+.-+++.|+|.+|...|..-++..|+. +.++|+||.+++.+|+|++|...|..+++-.|+. +++++.+|.+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 4778999999999999999999999987 6899999999999999999999999999987765 588999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.+|+.++|...|+++++.+|+.+.....
T Consensus 227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999998776543
No 277
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1e-05 Score=83.01 Aligned_cols=316 Identities=17% Similarity=0.077 Sum_probs=205.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCC--------cHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEA-VRLDPN--------YWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~la~ 318 (714)
....|++..+...+....+-++....+.+.+.+..+..++..|++.+|.+.+... +...+. ..-+|.+||.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 4455677788888888888888887788899999999999999999999887653 222222 2346789999
Q ss_pred HHHHcCCHHHHHHHHHhhcCC-----------CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQ-----------ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
++++++.|.-+..+|.++++. ...-....-...+..++.+..+...|+...|.++|.++...... .+.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-NPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-CcH
Confidence 999999999999999998841 11111222345677889999999999999999999999988655 467
Q ss_pred HHHHHHHHHHHcCC-------------------------------------------------HHHHHHHhhccccCCCC
Q 005108 388 LSMCRVEALLKLHQ-------------------------------------------------LEDAESSLSNIPKIEPS 418 (714)
Q Consensus 388 ~~~~la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~p~ 418 (714)
+|..+|+|.....+ .+-|.-+++.++-+-|.
T Consensus 371 lWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e 450 (696)
T KOG2471|consen 371 LWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNE 450 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCch
Confidence 77778877542210 23344555554433211
Q ss_pred C--------------------------CCch-------------------hhhhhhhhhhHHHHHHHHHHHHHhCcHHHH
Q 005108 419 T--------------------------VSSS-------------------QTRFFGMLSEAYTFFVRAQIEMALGRFENA 453 (714)
Q Consensus 419 ~--------------------------~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 453 (714)
. .... ...+. .....++...+.+-..+|+.-.|
T Consensus 451 ~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~le--Nm~~ai~A~~ayV~L~Lgd~i~A 528 (696)
T KOG2471|consen 451 KQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLE--NMRQAIFANMAYVELELGDPIKA 528 (696)
T ss_pred hhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHH--HHHHHHHHHHHHHHHHhcChhhH
Confidence 0 0000 01111 12345677788889999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----------------------C
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----------------------D 510 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~ 510 (714)
+...++.++. ++-...+..+..+ .-|.+++...+..+|...+.--+-- +
T Consensus 529 L~~a~kLLq~-~~lS~~~kfLGHi-------YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~ 600 (696)
T KOG2471|consen 529 LSAATKLLQL-ADLSKIYKFLGHI-------YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLD 600 (696)
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHH-------HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccC
Confidence 9999998875 3444445444333 2256667777777777665431110 1
Q ss_pred CC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 511 PS---------------NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP--NYTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 511 p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
|. ....++++|.+|.-+|++++|..++..+..+-+ ..+++....-.+-.++|+...|...+++
T Consensus 601 ~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 601 PSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred CcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHh
Confidence 10 024556677777777777777777766666554 3444544444455666666666665554
Q ss_pred H
Q 005108 574 L 574 (714)
Q Consensus 574 a 574 (714)
.
T Consensus 681 ~ 681 (696)
T KOG2471|consen 681 C 681 (696)
T ss_pred c
Confidence 3
No 278
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.65 E-value=2.6e-08 Score=83.49 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=53.8
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
++++++||+.||++|+...|.|.++..+++ ++.|+.|.+|+ ...+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 578999999999999999999999999998 69999988876 22357789999
Q ss_pred ccceEEEE-eCCeE
Q 005108 681 IVPTFKIY-KNGSR 693 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~ 693 (714)
.+|+++++ ++|++
T Consensus 82 ~iP~~~lld~~G~I 95 (95)
T PF13905_consen 82 GIPTLVLLDPDGKI 95 (95)
T ss_dssp SSSEEEEEETTSBE
T ss_pred cCCEEEEECCCCCC
Confidence 99999888 88874
No 279
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.64 E-value=4.1e-08 Score=87.88 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCc-------------------------chhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESP-------------------------GVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~-------------------------~l~~~~~ 678 (714)
+++++++||++||++|+...|.++++..++. ++.++.|++|+.. .+++.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 4689999999999999999999999887664 4778888777532 4566799
Q ss_pred ccccceEEEE-eCCeEEEEE
Q 005108 679 VRIVPTFKIY-KNGSRMKEI 697 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~ 697 (714)
|.++|+++++ ++|+++.+.
T Consensus 97 v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 97 VEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCEEEEECCCCCEEchh
Confidence 9999999888 689877654
No 280
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=6.2e-07 Score=77.45 Aligned_cols=98 Identities=23% Similarity=0.187 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC---
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS--- 512 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--- 512 (714)
+++.+|.++...|+.++|+.+|++++............+ ..+|..+...|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~---------i~lastlr~LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRAL---------IQLASTLRNLGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc
Confidence 466777777777777777777777777654443222111 12377777777777777777777776666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+..+...++.++...|++++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777777777777777766553
No 281
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=1.9e-05 Score=87.18 Aligned_cols=228 Identities=16% Similarity=0.087 Sum_probs=160.4
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 287 TGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
...+++.+|+..+.+.++..|+..-+....|..+.++|+.++|..+++..-..... ....+.. +-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~------l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF------LQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHH------HHHHHHHHhh
Confidence 45588999999999999999999999999999999999999999777654432111 2222222 2334889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
+++|...|++++..+|. ......+-.+|.+.+.|.+-.+.--++-+..|.+. .+.|..+..++..
T Consensus 93 ~d~~~~~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-------------yyfWsV~Slilqs 157 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-------------YYFWSVISLILQS 157 (932)
T ss_pred hhHHHHHHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-------------chHHHHHHHHHHh
Confidence 99999999999999998 56666677788888777665555444455667661 4456555555555
Q ss_pred hCcHHH---------HHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH-H-hhccCCCCH
Q 005108 447 LGRFEN---------AVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG-E-GLRFDPSNS 514 (714)
Q Consensus 447 ~g~~~~---------A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~-~-al~~~p~~~ 514 (714)
....++ |...+++.++.. +-....-..+ .-.++..+|+|++|.+.+. . +-+..+.+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-----------yl~iL~~~~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-----------YLLILELQGKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-----------HHHHHHhcccHHHHHHHHHHHHHHhccccch
Confidence 444333 444555555554 2222211111 1456778899999999983 3 333444555
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..-......+..+++|.+-.+...+++..++++
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 555667788889999999999999999999987
No 282
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.64 E-value=7e-08 Score=106.68 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=77.6
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..|...+ .....++|.||++||++|+.+.|.++++...+. .+.|+++|++.+. +.. ++|+++||+++|++|..
T Consensus 354 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 354 KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCC
Confidence 4555544 456789999999999999999999999998885 3789999998754 444 99999999999999876
Q ss_pred E--EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
+ .++.|. +.+.|.++|.+++
T Consensus 432 ~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 432 SEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred cCceEecCcCCHHHHHHHHHhcC
Confidence 4 567787 9999999998864
No 283
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.63 E-value=6.4e-08 Score=99.77 Aligned_cols=117 Identities=21% Similarity=0.452 Sum_probs=111.2
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..+.+..++..+.|+.|+..|.++|+++|+.+.++-+++.++.+.+++..|+..+.++++++|....+|++.|.++.+++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
++.+|...|++...+.|+++.+...+..+.......+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988877643
No 284
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.63 E-value=1.7e-07 Score=74.09 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=65.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 249 GNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 249 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
...|+..++|++|++++++++..+|+++..|..+|.++..+|++++|+..|+++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999998887766554
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=3.3e-06 Score=81.05 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 383 DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 383 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
+..+..++..|...++.|++++|+..|+.+....|..+-. ..+...++.++++.+++++|+..+++.+.
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-----------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-----------EQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456677789999999999999999999999999987421 44678889999999999999999999999
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCH-----------------HHH
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNS-----------------VLY 517 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~-----------------~~~ 517 (714)
+.|.++++-+.+-- +|.+++. +.-..+|+..|++.++..|+.. ..-
T Consensus 100 lyP~~~n~dY~~Yl---------kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 100 LYPTHPNADYAYYL---------KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred hCCCCCChhHHHHH---------HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99988765544311 2444332 2334578888999999999861 122
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 518 CNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
...|..|.+.|.|..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-+-.-.|+.+
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 346888999999999999999999987664 47888999999999999999886554444445544
No 286
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.62 E-value=1.2e-07 Score=89.41 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~----------------------~~~l~~~~~v~~~P 683 (714)
.+++++.||++||+.|+...+.+.++..++++ +.++.|++++ ..++++.|+|..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 46799999999999999999999999998864 7888888653 45678999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+++++ ++|+.+....|. +.+++++.|+.+.
T Consensus 141 ~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 98777 799999888998 9999999988753
No 287
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.61 E-value=5.6e-08 Score=86.95 Aligned_cols=70 Identities=11% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccC------------------------cchhhhCCc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDES------------------------PGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~------------------------~~l~~~~~v 679 (714)
.++++|+||++||++|+...|.+.++..++. ++.++.|++|.. ..+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 4589999999999999999999998877663 577777777643 346789999
Q ss_pred cccceEEEE-eCCeEEEEE
Q 005108 680 RIVPTFKIY-KNGSRMKEI 697 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~ 697 (714)
.++|+++++ ++|+++.+.
T Consensus 98 ~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 98 EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCEEEEECCCCCEEccc
Confidence 999999999 699987654
No 288
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.61 E-value=1.6e-07 Score=87.24 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE------EEEeccc-----------------------------Ccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF------LKVDIDE-----------------------------SPG 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~------~~vd~d~-----------------------------~~~ 672 (714)
+++.+|+|||.||++|+...|.++.+..+ ++.+ .-||+|+ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 66899999999999999999999999764 2333 4455443 223
Q ss_pred hhhhCCccccceE-EEE-eCCeEEEEEcCC-CHHHHHHHHh
Q 005108 673 VAHAENVRIVPTF-KIY-KNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 673 l~~~~~v~~~Pt~-~~~-~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
++.+|+|.++|+. +|+ ++|+++.+..|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 5678999999865 455 999999999999 8888876443
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=5.8e-07 Score=81.11 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG----------QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK-- 563 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 563 (714)
|+.|.+.++.....+|.+++.+++.|.++..+. .+++|+.-|++|+.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999998887763 46788888999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 564 ---------WADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 564 ---------~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
|++|.++|++|...+|++...+..|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 88999999999999999999988887653
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.59 E-value=1.1e-07 Score=113.31 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEe-----c----------------------ccCcchhhhC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVD-----I----------------------DESPGVAHAE 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd-----~----------------------d~~~~l~~~~ 677 (714)
..++++|+||+.||++|+...|.|+++..+|++ +.++.|. . |...++...|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 356899999999999999999999999999964 6666663 1 1234567899
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.++|+++++ ++|+++.++.|. ..++|++.|+..
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999999 899999999999 888888888764
No 291
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.58 E-value=2.2e-06 Score=72.32 Aligned_cols=101 Identities=29% Similarity=0.328 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGS 318 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~ 318 (714)
..+-..|..+...|+.+.|++.|.+++.+.|.++.+|.+++.++..+|+.++|++.+++++++.... ..++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999999986543 468899999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
+|..+|+.+.|...|+.+.+...+-
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999998886544443
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=2.9e-06 Score=87.00 Aligned_cols=295 Identities=14% Similarity=0.097 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc---------------C
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-LTGLGRIGEAVKECEEAVRL---------------D 306 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~---------------~ 306 (714)
..+...+...+..++|+..++++...-..+..+.+++++.+.+ |++.|.+.. ...+++...+ +
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhh
Confidence 4455566777888999999999999988888887777777765 445554432 1222221111 1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH---HHHHc---
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGD---AAIAA--- 380 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~---~al~~--- 380 (714)
.+....+++.|.+|+...++..|++.....+...++-.......+ .+..-..+....+.++|+.++. +.+..
T Consensus 97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v--~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASV--TLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 223567888999999999999999887766543333222111111 1111222334444555554433 22221
Q ss_pred CCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 381 GAD--------------------------FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 381 ~p~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
.+. ....+.......|.+..+..-+....+.+..+..+. +
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------------~ 240 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------------S 240 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------------c
Confidence 000 001233345666778888888888888777766665 6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH-hccCCC---CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKA-GQIDPR---NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF- 509 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~---~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~- 509 (714)
......++.++..|++.+|.+.+... +...+. .++....+ .+.++|.++++.+.|.-+..+|.+|++.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci-------f~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI-------FNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe-------eecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 67888999999999999999988654 222232 11111111 1124599999999999999999999961
Q ss_pred --------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 510 --------DP---------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 510 --------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.| ...+++|+.|..|...|+.-.|.++|.++....-.++..|++++.|....
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 23578888888888888888888888888888888888888888887543
No 293
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.55 E-value=1.9e-07 Score=81.13 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=65.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEecccC-----------------------cchhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVDIDES-----------------------PGVAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~~-----------------------~~l~~~~~v~~~ 682 (714)
.+.+++.||+.||+.|+...+.+.++..++ +++.++.|+++.. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 468999999999999999999999999998 6799999999886 778999999999
Q ss_pred ceEEEE-eCCeEEEEEcC
Q 005108 683 PTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g 699 (714)
|+++++ ++|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999888 79999988765
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.3e-05 Score=73.24 Aligned_cols=195 Identities=14% Similarity=0.074 Sum_probs=129.1
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA----GAD-FSPQLSMCRVE 394 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~----~p~-~~~~~~~~la~ 394 (714)
+...+++++|.++|.++ +..|...++|..|-..|.++... +.. .....|...+.
T Consensus 24 fgg~~k~eeAadl~~~A---------------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA---------------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN 82 (288)
T ss_pred cCCCcchHHHHHHHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33445788888888766 33455566777777777666544 221 12333444455
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
+|.+ .+.++|+.++++++++..+- .....-+..+..+|.+|... .++++|+.+|+++-+........-..
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~--------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDM--------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhh--------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 5544 59999999999998876653 11222345567888888775 89999999999987654433221110
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS-------VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
- ..+...+..-...++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|.
T Consensus 154 N------KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 154 N------KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 0 0011236666778999999999999887654443 34555678888888888888899999999998
Q ss_pred CHHH
Q 005108 547 YTKA 550 (714)
Q Consensus 547 ~~~~ 550 (714)
....
T Consensus 228 F~ds 231 (288)
T KOG1586|consen 228 FTDS 231 (288)
T ss_pred cccc
Confidence 7533
No 295
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.53 E-value=3.2e-07 Score=81.04 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe---------------------cccCcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD---------------------IDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd---------------------~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||+.|+.+.|.+..+..++. +..+.+| .|...++++.|+|.++|+++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 4689999999999999999999999887743 1112111 23456789999999999999
Q ss_pred EEeCCeEEEEEcCC-CHHHHHHH
Q 005108 687 IYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
++.+|+++.+..|. +.+.|++.
T Consensus 99 vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 99 IVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEcCCCeEEEEeccCCHHHHHhh
Confidence 99544488899999 98888764
No 296
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.2e-07 Score=99.97 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=75.6
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
...|+.++ ....-++|.|+|+||++|+++.|.+++|.+.|. ++.+.++|...++- ..+.|.+.||+.+|+.|..
T Consensus 373 gknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred ecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEEecCCCC
Confidence 35666654 446789999999999999999999999999985 58889999987663 3447777999999988874
Q ss_pred E--EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
. -.+.|. +.++|..+|+..+
T Consensus 451 ~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 451 SNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCCcccCCCcchHHHHhhhccCC
Confidence 3 345577 9999999998764
No 297
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.51 E-value=5.6e-07 Score=93.41 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA---FRSNRAAALTGLGRIGEAVKECEEAVRLD 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (714)
.+|+++.+++++|..|+..|+|++|+.+|+++++++|++.. +|+++|.+|..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 48899999999999999999999999999999999999985 49999999999999999999999999973
No 298
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=2.2e-06 Score=83.15 Aligned_cols=100 Identities=23% Similarity=0.211 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 314 (714)
++.-+|..|..+++.|+|.+|...|..-++..|+. +.++++||.+++.+|+|++|...|..+++..|+. +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 34558999999999999999999999999999986 7899999999999999999999999999987765 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCC
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQA 340 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~ 340 (714)
.+|.+..++|+.++|...|+++++..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999998733
No 299
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.9e-06 Score=80.78 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=96.4
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhcc--------CCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRF--------DPSN----------SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
..+...|+-+++.|+|.+|...|.+|+-. .|.+ ..++.|++.|+...|+|-++++.+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33456799999999999999999988742 4444 45788999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHh
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI-AESLFHAQVSL 595 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~L~~~~~~l 595 (714)
.+|.+..+|+..|.++...=+.++|...|.++++++|.-..+ ...|..+...+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~ 312 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRM 312 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976543 34444443333
No 300
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=6.1e-07 Score=93.16 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL---YCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
...+.++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+++|++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666666666533 666666666666666666666666665
No 301
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.44 E-value=5.3e-07 Score=79.96 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecc-----c----------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDID-----E----------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d-----~----------------------~~~l~~~~~ 678 (714)
.+++++.||+.||+.|....|.|+++..++.+ +.++.|..+ . ...++..|+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 46899999999999999999999999999963 777777531 1 234577899
Q ss_pred ccccceEEEE-eCCeEEEEEcCC
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
|..+|+++++ ++|+++....|.
T Consensus 103 v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 103 NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCcCCeEEEECCCCcEEEEEecC
Confidence 9999999888 899999998885
No 302
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3e-05 Score=73.76 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF--- 509 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--- 509 (714)
..+.+.+..++...+.|.-.+..+.+.++.+ |.++.....+ |.+..+.|+.+.|..+|+..-+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L------------gr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL------------GRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999999999988 4555555544 89999999999999999954432
Q ss_pred -C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 510 -D--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 510 -~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+ ..+..+..+.+.+|.-.+++.+|...|.+++..+|.++.+..+.|.|+.-+|+..+|++.++.+++..|...
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 2 234567778889999999999999999999999999999999999999999999999999999999999754
No 303
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=4.9e-05 Score=81.55 Aligned_cols=285 Identities=14% Similarity=0.124 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH------HHhc----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEE------AVRL----DPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH 346 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 346 (714)
.|-.-|.+|.+..++++|+++|++ ++++ .|.. ...-...|.-+.+.|+++.|+.+|-++-.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------
Confidence 344456666677778888888764 3332 2322 23334567778888999999998865521
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc------CCCCCC
Q 005108 347 RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK------IEPSTV 420 (714)
Q Consensus 347 ~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~ 420 (714)
...........++|.+|+.+++..-.... ...+|-.++.-|...|+|+.|.++|.++-. +.....
T Consensus 735 -------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 735 -------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG 805 (1636)
T ss_pred -------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence 11111223344555555555544333221 122333344555555555555554443311 000000
Q ss_pred Cchh-----hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh-----HHHH---------H
Q 005108 421 SSSQ-----TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN-----VKLV---------A 481 (714)
Q Consensus 421 ~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----l~~~---------~ 481 (714)
...+ .++.+.-.....|...+.-+-..|+|.+|..+|-..- .|+.....+.... ++.+ +
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--CchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 0000 0000001124456677777788888888887764321 2322221111100 1222 2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccC------CC-----------------CH--HHHHH---------HHHHHHHh
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFD------PS-----------------NS--VLYCN---------RAACWFKL 527 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~-----------------~~--~~~~~---------la~~~~~~ 527 (714)
..+..|.-|...|+...|...|-++-... .. +. .+.+. -..++.+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 23456788888899999998887654321 00 00 00010 01233445
Q ss_pred CCHHHHHHHH------HHHHH-----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 528 GQWERSVEDS------NQALL-----IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 528 g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
|..+.|+... +-+.+ ....-..++..++..+...|++++|-+.|-++++++.-+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 5555555432 11111 122335788899999999999999999999999987544
No 304
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2e-06 Score=84.26 Aligned_cols=104 Identities=33% Similarity=0.490 Sum_probs=91.2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
.++..|+-|++.++|..|+..|.++|+..-. +..+|.|+|.|...+|+|..|+..+.+++.++|.+..++++=|.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3456699999999999999999999997433 378999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++.+.++++|..+.+..++++-+...+.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999888888777665444433
No 305
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.6e-07 Score=83.65 Aligned_cols=97 Identities=30% Similarity=0.458 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.+..+...|+.++...+|..|+.+|.++|.++|..+.+|.+++.|++++.+++.+...+.++++++|+.+.+++.+|..+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhc
Q 005108 321 VRLGQVENARRHLCLSG 337 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al 337 (714)
.....|++|+..+.++.
T Consensus 89 l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HhhccccHHHHHHHHHH
Confidence 99999999999998884
No 306
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.40 E-value=7.2e-07 Score=81.44 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=62.2
Q ss_pred CCCceEEEeecC-CCccccccchHHHHHHhhC--CCcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFKSA-SNLHCKQISPYVETLCGRY--PSINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..++++|.||+. ||++|+...|.+.++.++| .++.++.|..+. ...++++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 456889999999 9999999999999998876 348887776554 45678899998
Q ss_pred -------ccceEEEE-eCCeEEEEEcCC
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.+|+++++ ++|+++....|.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99987655 999999999999
No 307
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.39 E-value=3.2e-05 Score=81.15 Aligned_cols=106 Identities=19% Similarity=0.086 Sum_probs=95.9
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 565 (714)
|..+...|+...|++++..|+...|.. .....+||.++.+-|...+|-..+.+++.+.-..+-.++.+|.+|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 555667899999999999999988865 4567899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 566 DAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
.|++.|+.|++++|+++++.+.|..+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999998887654
No 308
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.39 E-value=8.1e-07 Score=77.24 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEe---ccc-----------------CcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVD---IDE-----------------SPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd---~d~-----------------~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||++|+...|.++++..++. ++.++.+. .++ ..++++.|+|..+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 4689999999999999999999999988774 46666552 111 23457788999999988
Q ss_pred EE-eCCeEEEE
Q 005108 687 IY-KNGSRMKE 696 (714)
Q Consensus 687 ~~-~~G~~~~~ 696 (714)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 77 78987764
No 309
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.38 E-value=1.2e-06 Score=83.55 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--------------------cCcchhhhCCccccceEE
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--------------------ESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--------------------~~~~l~~~~~v~~~Pt~~ 686 (714)
..+++++.||++||+.|+...|.+.++..++ ++.++.|..+ ...++++.|+|..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 3457999999999999999999999988764 4555555422 144678899999999876
Q ss_pred EE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 687 IY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
++ ++|+++.+-...+.+.+++.++.
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHH
Confidence 65 89998876333366777777764
No 310
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.6e-07 Score=95.09 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=80.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
..+...+...+..+|+|+++||++|+.+.|.+.++...+.+ +.+..||++++..++..|+|.+.||+++|..|.....+
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~ 117 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDY 117 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeec
Confidence 34445566788999999999999999999999999888876 88999999999999999999999999999999666777
Q ss_pred cCC-CHHHHHHHHhh
Q 005108 698 VCP-SRDMLEHSVRH 711 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~ 711 (714)
.|. +.+.+.+++..
T Consensus 118 ~~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 118 SGPRNAESLAEFLIK 132 (383)
T ss_pred cCcccHHHHHHHHHH
Confidence 777 77888777654
No 311
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=9.9e-06 Score=71.11 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++..|...+..|+|++|++.|+......|...-+-... ..++.+|++.+++++|+..+++-++++|.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAq---------L~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQ---------LDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHH---------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 56789999999999999999999999998888664432221 134999999999999999999999999987
Q ss_pred ---HHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 005108 514 ---SVLYCNRAACWFKLGQ---------------WERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 550 (714)
..+++.+|.+++.+.. ..+|...|++.++..|+...+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 4788999999999887 899999999999999997643
No 312
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.35 E-value=1.3e-06 Score=75.81 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=70.1
Q ss_pred hhhccCCCceEEEeecCCCccccccchH-H--HHHHhhC-CCcEEEEEecc--cCcchhhhCCccccceEEEE-e-CCeE
Q 005108 622 RAAVSLPGVSVVHFKSASNLHCKQISPY-V--ETLCGRY-PSINFLKVDID--ESPGVAHAENVRIVPTFKIY-K-NGSR 693 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~~c~~C~~~~p~-l--~~l~~~~-~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~-~-~G~~ 693 (714)
..+....+.++|+|+++||+.|+.+... + .++.+.+ .++.++.+|++ +..+++..|++.++|+++++ . +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444557799999999999999987642 2 1222222 24667788887 45578999999999999888 5 8999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +++++...|+++
T Consensus 91 l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHH
Confidence 9999999 999998888764
No 313
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=7.3e-07 Score=71.53 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLI----QPN---YTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
-..++.++|.+|..+|+|++|+++|++++++ .++ ...++.++|.++..+|++++|+++|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567888888888888888888888888864 112 2467788888888888888888888888875
No 314
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.34 E-value=1e-06 Score=69.72 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
+..|+++||+.|+.+.+.+++ .++.+..+|+++.+. +.+.+++.++|++++. |+. +.|++.+.|++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 467999999999999988865 357889999987665 4566999999999874 653 77888899988
Q ss_pred HHh
Q 005108 708 SVR 710 (714)
Q Consensus 708 ~~~ 710 (714)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
No 315
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0019 Score=67.94 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=64.8
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.....+|.|.+.|+.+...+..+ -++++.+.|++.+...|..+.+|.......+...+|+.-...|.+++..
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33457899999999998877666 9999999999999999999999999999999999999999999999864
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=2.5e-05 Score=73.00 Aligned_cols=204 Identities=13% Similarity=0.050 Sum_probs=132.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH
Q 005108 363 KVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442 (714)
Q Consensus 363 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~ 442 (714)
..+.+++|.++|.++ ++.|...++|..|-..|.++-+..-... ....-+..|...+.
T Consensus 26 g~~k~eeAadl~~~A---------------an~yklaK~w~~AG~aflkaA~~h~k~~--------skhDaat~YveA~~ 82 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA---------------ANMYKLAKNWSAAGDAFLKAADLHLKAG--------SKHDAATTYVEAAN 82 (288)
T ss_pred CCcchHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC--------CchhHHHHHHHHHH
Confidence 345788888887764 3444444555555555554433221110 00001333444444
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC-cCHHHHHHHHHHhhccCCCC------HH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS-ERFTEACQAYGEGLRFDPSN------SV 515 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~ 515 (714)
+| +..+.++|+.++++++++.-+-...... +.....+|.+|... .++++|+.+|+++-+....+ -.
T Consensus 83 cy-kk~~~~eAv~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 83 CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred Hh-hccChHHHHHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 44 5569999999999999875443322211 12234568888766 89999999999998865433 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH--
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-------KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE-- 586 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-- 586 (714)
.+...|..-..+++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|...+.++
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 566677777889999999999999987655543 34566788888888988999999999999997765543
Q ss_pred HHHHHHHHhh
Q 005108 587 SLFHAQVSLK 596 (714)
Q Consensus 587 ~L~~~~~~l~ 596 (714)
.|..+...+.
T Consensus 236 flk~L~~aie 245 (288)
T KOG1586|consen 236 FLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 317
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.30 E-value=6.1e-07 Score=95.57 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=79.9
Q ss_pred ehhhhHHhhhccCCC--ceEEEeecCCCccccccchHHH---HHHhhCCCcEEEEEecccCc----chhhhCCccccceE
Q 005108 615 VSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVE---TLCGRYPSINFLKVDIDESP----GVAHAENVRIVPTF 685 (714)
Q Consensus 615 i~~~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~---~l~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Pt~ 685 (714)
+....+.++.+.+.. +++++|+|+||..|+.+.+..- +...+.+++.++++|+..+. ++.++||+.++|++
T Consensus 459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~ 538 (569)
T COG4232 459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTY 538 (569)
T ss_pred cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEE
Confidence 344445666665544 9999999999999999998653 34445678999999998743 46789999999999
Q ss_pred EEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 686 KIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 686 ~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
++| .+|++..-+.|+ +.+.+.+.|++..
T Consensus 539 ~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 539 LFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999 599988889999 9999999998753
No 318
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.30 E-value=2e-06 Score=83.71 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=65.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C-cc---hh-hh----CC-----------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S-PG---VA-HA----EN----------- 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~-~~---l~-~~----~~----------- 678 (714)
.++++|.||+.||+.|....|.|.++.++|. ++.++.|++++ . ++ .+ +. |.
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~ 178 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPS 178 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcch
Confidence 4689999999999999999999999999986 48888887531 1 11 11 11 11
Q ss_pred -------------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 -------------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 -------------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+..|+.+++ ++|+++.++.|. +.++|+..|+++
T Consensus 179 ~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 179 TAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 2335776666 999999999999 999999999875
No 319
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.30 E-value=8e-05 Score=67.25 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc-CCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK-IEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
|.+..+....+.+...|. ..-.+.++..+.++|++.+|...|++++. +.-.+ ...+..+++..
T Consensus 71 dP~R~~Rea~~~~~~ApT--vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aq 134 (251)
T COG4700 71 DPERHLREATEELAIAPT--VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQ 134 (251)
T ss_pred ChhHHHHHHHHHHhhchh--HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHH
Confidence 444444555555555554 33345689999999999999999999875 33343 77889999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCC--HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRN--VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
+..+++.+|...+++..+.+|.. ++....+ |..|...|++++|...|+.++...| .+......+.
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~------------aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e 201 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF------------ARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAE 201 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHH------------HHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 99999999999999999988754 4444444 8999999999999999999999987 5778888899
Q ss_pred HHHHhCCHHHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~ 542 (714)
.+.++|+.++|...+....+
T Consensus 202 ~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 202 MLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcchhHHHHHHHHHHH
Confidence 99999998888877665543
No 320
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.26 E-value=4.5e-05 Score=79.44 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.+-....+..+.+.-++...+|++++|+.+.+|..+|.- ...-..+|.++|+++++.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 444556677788888888888888888887777776642 223467777777777664
No 321
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.1e-06 Score=80.43 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=71.4
Q ss_pred ehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCcc------ccce
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVR------IVPT 684 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~------~~Pt 684 (714)
.+..+.+++.+.. ...+++.|++.|.+.|+...|.+.+|..+|. .++|.+||+--.++.+++|+|. .+||
T Consensus 129 f~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT 208 (265)
T KOG0914|consen 129 FTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPT 208 (265)
T ss_pred ecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCe
Confidence 3344445544433 3478999999999999999999999999994 5999999999999999999775 8899
Q ss_pred EEEEeCCeEEEEEcCC
Q 005108 685 FKIYKNGSRMKEIVCP 700 (714)
Q Consensus 685 ~~~~~~G~~~~~~~g~ 700 (714)
+++|++|+++.|.-..
T Consensus 209 ~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 209 YILFQKGKEVSRRPDV 224 (265)
T ss_pred EEEEccchhhhcCccc
Confidence 9999999998876554
No 322
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0065 Score=63.14 Aligned_cols=331 Identities=15% Similarity=0.063 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCc---
Q 005108 242 AEELKRMGNELY-RKGCFGEALSMYDKAISLA---PRN----AAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNY--- 309 (714)
Q Consensus 242 ~~~~~~~g~~~~-~~g~~~~Al~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~--- 309 (714)
+.....+|..++ ...+++-|...+++++.+. |.. ..++..++.+|.... .+..|...+++++++....
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w 125 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW 125 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence 455666777654 5789999999999998763 222 456778899999888 7889999999999986554
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH------------------HHHHH---------------
Q 005108 310 -WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV------------------VEKHL--------------- 355 (714)
Q Consensus 310 -~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~------------------~~~~~--------------- 355 (714)
-...+.|+.++.-..++..|++.+.--....++.....+.. +....
T Consensus 126 sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~ 205 (629)
T KOG2300|consen 126 SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKT 205 (629)
T ss_pred hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChH
Confidence 35677889999999999999988653322222211111100 00000
Q ss_pred ----------H-HhHHHHHcCCHHHHHHH---HHHHHHcC-C-----------CCCHHHHHH------HHHHH-------
Q 005108 356 ----------S-KCTDARKVGDWKSALRE---GDAAIAAG-A-----------DFSPQLSMC------RVEAL------- 396 (714)
Q Consensus 356 ----------~-~a~~~~~~g~~~~Al~~---~~~al~~~-p-----------~~~~~~~~~------la~~~------- 396 (714)
. ....|...|+...+... +++.+... + ...+..+.. -+.+|
T Consensus 206 ~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hs 285 (629)
T KOG2300|consen 206 QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHS 285 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhh
Confidence 0 11122333444433333 33333221 1 011111100 01111
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCch-hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSS-QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+..|-+++|.++-++++.......... ..+...++ ....+-.+..+-.-.|++.+|++....+.+..-..+.... .
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~-km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L--l 362 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF-KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL--L 362 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH--H
Confidence 234556677776666665432221111 11222222 2223455666777789999999998887764333322110 0
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS-N--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY----- 547 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 547 (714)
+...+.-..-+|......+.++.|...|..+++.... + +.+..++|..|...|+-+.-.+.++. +.|.+
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~s 439 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLS 439 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcch
Confidence 0111112223477788889999999999999987433 2 34556789999998876554444433 45553
Q ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 548 -----TKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 548 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
..+++..|...+.++++.||...+.+.++..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2567888888899999999999999999886
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0042 Score=64.47 Aligned_cols=325 Identities=13% Similarity=0.011 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------
Q 005108 242 AEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRL----------- 305 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 305 (714)
-++...++..|.+.. .+..|...+.+++++....+ ...+.++..+.-..++..|++.+.--.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 356667788887776 78889999999999876664 34566788888888888877764221110
Q ss_pred ------------CCCc---------------------------HHHHHHHHHH-HHHcCCHHHHHHHHHhh---cCCCCh
Q 005108 306 ------------DPNY---------------------------WRAHQRLGSL-LVRLGQVENARRHLCLS---GQQADP 342 (714)
Q Consensus 306 ------------~p~~---------------------------~~a~~~la~~-~~~~g~~~~A~~~~~~a---l~~~~~ 342 (714)
.++. ...|..+-.+ |...|+...+...+++. ++...+
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 0110 0112222222 22334444443333322 221111
Q ss_pred ---------------HHHHHHH--HHHH--HHHHhHHHHHcCCHHHHHHHHHHHHHcCCC------CC-------HHHHH
Q 005108 343 ---------------TEVHRLQ--VVEK--HLSKCTDARKVGDWKSALREGDAAIAAGAD------FS-------PQLSM 390 (714)
Q Consensus 343 ---------------~~~~~l~--~~~~--~~~~a~~~~~~g~~~~Al~~~~~al~~~p~------~~-------~~~~~ 390 (714)
.....+. .+.. ++.-..--+..|.+++|.++-+++|..-.. .. ..++-
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 0001110 0101 111111123567788888888888765221 11 12233
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-CCHH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-RNVE 469 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 469 (714)
.++.|-.-.|++.+|++.+..+.+.....+. ...-....+.+++.+|.....-+.+++|...|..|.+.-. .+..
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~----~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPT----PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc----hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 4667778889999999888877654322211 1122234577889999999999999999999999987543 3333
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----------SVLYCNRAACWFKLGQWERSVEDSNQ 539 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (714)
+...+ ++|..|...++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+
T Consensus 404 a~~nl----------nlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 404 AFCNL----------NLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHHHH----------hHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33333 568999998876655554443 34442 46777888889999999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 540 ALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 540 al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.++.... ..-.+..|+.+..-.|+..++.+...-++++...-++
T Consensus 471 ~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 471 TLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 9987511 1234567788889999999999998888776544333
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.23 E-value=8.2e-06 Score=73.82 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH---hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL---FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
|+.|.+.++.....+|.+.+.+...... +..++..- .....+++|+.-|+++|.++|+...+++++|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~A-----LLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGA-----LLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-----HHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHH-----HHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 6889999999999999999988766221 11111110 112457889999999999999999999999999987
Q ss_pred hCC-----------HHHHHHHHHHHHHhCCCCHHH
Q 005108 527 LGQ-----------WERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 527 ~g~-----------~~~A~~~~~~al~~~p~~~~~ 550 (714)
++. |++|.++|++|...+|++...
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 653 889999999999999998643
No 325
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.23 E-value=1.6e-06 Score=76.60 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=55.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEeccc-------------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDE-------------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~-------------------------~~~l~~~~~ 678 (714)
++++.++|.|.||++|+.+.|.+.++.++.. .+.++.|+.|. .+++...|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 4688999999999999999999999887762 37777777664 345677999
Q ss_pred ccccceEEEE-eCCeEEE
Q 005108 679 VRIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~ 695 (714)
|.+||+++++ .+|+.+.
T Consensus 113 v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVT 130 (157)
T ss_pred cCcCceeEEecCCCCEeh
Confidence 9999998777 8898775
No 326
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.22 E-value=3.1e-06 Score=81.01 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hhhh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VAHA------------------ 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~~~------------------ 676 (714)
.+++++.||++||++|....|.|+++..+|. ++.++.|++++ .++ .++.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~ 118 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENT 118 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCcc
Confidence 4689999999999999999999999999985 48888887531 111 1222
Q ss_pred --------------CCc----cccc----eEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 --------------ENV----RIVP----TFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 --------------~~v----~~~P----t~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.+ ..+| ||+|-++|+++.++.|. +.+.|+..|+.+
T Consensus 119 ~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 119 HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred CHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 221 1233 44555999999999998 888888888764
No 327
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.21 E-value=0.011 Score=61.25 Aligned_cols=138 Identities=12% Similarity=-0.031 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+...|-.+.+++++.+|.+.|.++.+...+.+ +++..+..-.+-+.+.+.-...+...-+..|.......-.|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456789999999999999999999988765553 34444444444556677666666666677788888888899
Q ss_pred HHHHHcCCHHHHHHHHHhhcCC---C-----ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 318 SLLVRLGQVENARRHLCLSGQQ---A-----DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~---~-----~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
...++.+++.+|++.+...-.. . +.+....+...-.-...+.++...|.+.++...+++.+..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999988665442 1 1111111222222233567788999999999988887754
No 328
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=1.9e-06 Score=69.12 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL---AP----RNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
-+..+..+|.+|...|+|++|+.+|++++++ .+ .-..++.++|.++..+|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567788888888888888888888888865 11 12567778888888888888888888888764
No 329
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.20 E-value=1.6e-06 Score=76.19 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=56.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC---CccccceEEEE-eCCeEEEEEcCCCHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE---NVRIVPTFKIY-KNGSRMKEIVCPSRD 703 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~-~~G~~~~~~~g~~~~ 703 (714)
....++.|..+|||.|...-|++.++.+..|++.+-.+.+|++.++..+| |.+.||+|+++ ++|+++.+.. +-++
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg-erP~ 119 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG-ERPK 119 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE-SS-H
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc-CCCH
Confidence 34678889999999999999999999999999888888888888877655 78999999999 6789888874 4344
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.+.+.+.++
T Consensus 120 ~~~~~~~~~ 128 (129)
T PF14595_consen 120 EVQELVDEY 128 (129)
T ss_dssp HHH------
T ss_pred HHhhccccC
Confidence 555555543
No 330
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=5.7e-05 Score=76.81 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh-CcCHHHHHHHHHHhhccCCCC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK-SERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~ 513 (714)
.+|..+.....+.+..+.|..+|.+|++..+....+|... |.+.+. .++.+.|..+|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~------------A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY------------ALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH------------HHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 3677788888888899999999999997766677777765 777666 566666999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
..+|......+...++.+.|...|++++..-+... .+|......-.+.|+.+.....++++.+..|++..+...
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999998766654 577788888889999999999999999999996665543
No 331
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=0.00022 Score=74.43 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=117.0
Q ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCC------Ch-HH-----HH------HHH
Q 005108 288 GLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA------DP-TE-----VH------RLQ 349 (714)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------~~-~~-----~~------~l~ 349 (714)
+..+.+.-++..++|++++|+.+.+|..||.-. ..-..+|.++|+++++.. +. .. .. .-.
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 445667778888999999999999998887632 234566777777665410 00 00 00 001
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-CCCCCchhhhh
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-PSTVSSSQTRF 427 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 427 (714)
.+.....++.+..++|+.++|++.+..+++..|. +...+..++..+++.++.|.++...+.+--++. |+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS-------- 329 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS-------- 329 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch--------
Confidence 2344566888999999999999999999998875 466788899999999999999999998864332 333
Q ss_pred hhhhhhHHHHHHHHHHHHH-hCc---------------HHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 428 FGMLSEAYTFFVRAQIEMA-LGR---------------FENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 428 ~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
+...+..|.+..+ .++ -..|++.+.+|++.+|.-+..+...
T Consensus 330 ------Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 330 ------ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ------HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 4444444443322 111 2356788889999998887765443
No 332
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00032 Score=66.24 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=64.6
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc------CCCCHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF------DPSNSVLYCNR 520 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 520 (714)
.-+.++|+.+|++++.+........... +.+...+.++.+..+|++|-..+.+-... .+.-...+...
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ 196 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAF------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA 196 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHH------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHH
Confidence 3455666666666654433222211111 11112367777777787777666553321 22233445555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLI----QPNYTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
..+|....+|..|.++++..-++ .+++..++-+|-..| ..|+.++....+
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 56666677888888888887664 345556666655544 335555554443
No 333
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.14 E-value=0.0022 Score=70.19 Aligned_cols=165 Identities=14% Similarity=0.027 Sum_probs=116.1
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH----HhCcHHHHHHHHHHHhccCCCCHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM----ALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.+.--.|+-+.+++.+.++.+...-. ..+..... ..|+.....+. .....+.|.++++...+..|+..-
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~-----~~la~L~L--L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l 268 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIR-----SPLAALVL--LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL 268 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcc-----hHHHHHHH--HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH
Confidence 33445688999999999987632221 11111111 11121111121 345688999999999999998776
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+.. |.++...|+.++|++.|++++..... ....++.++.++..+.+|++|.++|.+..+.+.
T Consensus 269 fl~~~------------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 269 FLFFE------------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHH------------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 55543 99999999999999999998864322 256788899999999999999999999998654
Q ss_pred CC-HHHHHHHHHHHHHhccH-------HHHHHHHHHHHHh
Q 005108 546 NY-TKALLRRAASNSKLEKW-------ADAVRDFEVLRRE 577 (714)
Q Consensus 546 ~~-~~~~~~la~~~~~~g~~-------~eA~~~~~~al~~ 577 (714)
-. .-..|..|.|+..+++. ++|.++|.++-.+
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 43 23446678889999999 7777777766544
No 334
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.11 E-value=4e-06 Score=82.79 Aligned_cols=107 Identities=20% Similarity=0.371 Sum_probs=95.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..+.-.+..|.+++|++.|..+|+++|....+|..++.++.+++++..|+..|..+++++|+...-|-..+.+...+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++|..++..+.+++- ++++-..|..+.
T Consensus 199 e~aa~dl~~a~kld~-dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY-DEANSATLKEVF 225 (377)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHhc
Confidence 999999999999874 344444454443
No 335
>PLN02412 probable glutathione peroxidase
Probab=98.10 E-value=8.7e-06 Score=75.81 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=64.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc--------cCcch------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID--------ESPGV------------------------ 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d--------~~~~l------------------------ 673 (714)
.+++++.||+.||+.|+...|.|.++..+|. ++.++-|..+ ..+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 3689999999999999999999999999986 4888877643 11111
Q ss_pred -hhhCC-------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 674 -AHAEN-------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 674 -~~~~~-------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+..|+ |...|+.+++ ++|+++.++.|. +.++|+..|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 11111 4446876666 999999999999 999999888764
No 336
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.08 E-value=6e-06 Score=85.53 Aligned_cols=104 Identities=35% Similarity=0.501 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+..+...++.++..++|+.|+..|.+||+++|+++.++.+++.++.+.+++..|+..+.++++++|....+|+..|..+.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcC--CCChHHH
Q 005108 322 RLGQVENARRHLCLSGQ--QADPTEV 345 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~--~~~~~~~ 345 (714)
.++.+.+|+..|++... +.++...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 99999999999998766 4444443
No 337
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.1e-05 Score=75.35 Aligned_cols=98 Identities=29% Similarity=0.378 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPR----NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.++-+...|+.|++.++|..|+.+|.+.|+..-. ++..|.++|.|.+.+|+|..|+..+.+++.++|.+..++++=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5788889999999999999999999999997543 367899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcC
Q 005108 317 GSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~ 338 (714)
|.+++.+.++.+|..+.+..++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987754
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.06 E-value=0.005 Score=70.14 Aligned_cols=319 Identities=18% Similarity=0.078 Sum_probs=192.0
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----c
Q 005108 241 DAEELKRMGNELY-RKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN----Y 309 (714)
Q Consensus 241 ~~~~~~~~g~~~~-~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 309 (714)
++..++.+|..++ ...++++|..++++++.+...+ ..+.+.++.++.+.+... |...++++++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 6788899999988 7789999999999998876432 334567788888888877 99999999886544 2
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 310 WRAHQRL--GSLLVRLGQVENARRHLCLSGQQ----ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 310 ~~a~~~l--a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+...+.+ ...+...+++..|++.++..... .++.. .+...+..+......+..+++++..++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-----~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-----FVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 2222222 33333347999999999887762 23332 2233344455566777778888888777443211
Q ss_pred -------CCHH--HHHH--HHHHHHHcCCHHHHHHHhhccc---cCCCCCC-------C-chh-------------hhhh
Q 005108 384 -------FSPQ--LSMC--RVEALLKLHQLEDAESSLSNIP---KIEPSTV-------S-SSQ-------------TRFF 428 (714)
Q Consensus 384 -------~~~~--~~~~--la~~~~~~g~~~~A~~~~~~al---~~~p~~~-------~-~~~-------------~~~~ 428 (714)
..+. .+.. ...++...|+++.+...++++- +...+.. + ... ...+
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 1121 1222 2345667777766666654432 1111110 0 000 0011
Q ss_pred hhh----hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH--------H----HH--HHHHhHHHHHHHHHHHhHH
Q 005108 429 GML----SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV--------E----VA--VLLNNVKLVARARARGNDL 490 (714)
Q Consensus 429 ~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~----~~--~~l~~l~~~~~~~~~g~~~ 490 (714)
..+ ..+.+|..-+......+..++|.++++++++.-.+.. . +. ..+...-.......++.+.
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1233455556667777777788888888774311111 0 00 0000111122234568888
Q ss_pred hhCcCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHhCCCCH---HH
Q 005108 491 FKSERFTEACQAYGEGLRFD---PS------NSVLYCNRAACWFKLGQWERSVEDSN--------QALLIQPNYT---KA 550 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~~ 550 (714)
+-.+++.+|....+.+.+.. |. .+.+++..|..+...|+.+.|+..|. .+....+... -+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 88999999999888776542 22 37888999999999999999999998 3333344332 33
Q ss_pred HHHHHHHHHHhccHH
Q 005108 551 LLRRAASNSKLEKWA 565 (714)
Q Consensus 551 ~~~la~~~~~~g~~~ 565 (714)
..++..++...+.-.
T Consensus 452 ~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 452 ALNLAIILQYESSRD 466 (608)
T ss_pred HHHHHHHhHhhcccc
Confidence 456666666555433
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=0.0014 Score=73.44 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC--
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGL-----GRIGEAVKECEEAVRL-----DPNYWRAHQRLGSLLVRLG-- 324 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 324 (714)
+..+|..+|+.+.+. .+..+...+|.||..- .+.+.|+.+|+.+.+. .-.+..+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345677777777654 3566777777777654 4778888888877651 1114557777888887743
Q ss_pred ---CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 005108 325 ---QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK--- 398 (714)
Q Consensus 325 ---~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~--- 398 (714)
+++.|+.+|.++.....+.....+..+...- . ...++..|.++|..+.+.+. ....+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g---~---~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETG---T---KERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcC---C---ccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 6677888888877655555443333221110 0 22467788888888887763 3344446777664
Q ss_pred -cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 399 -LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 399 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
..+.+.|..+++++.+.+.- .+.+.++..+... ++++.+...+....+..-........+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~----------------~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l- 438 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNP----------------SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYL- 438 (552)
T ss_pred cCCCHHHHHHHHHHHHHccCh----------------hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHH-
Confidence 34788899999998887732 2334444433332 6677666666555443322222111100
Q ss_pred HHHHHHHHHHHhHHh-h---CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCH
Q 005108 477 VKLVARARARGNDLF-K---SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL----GQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 477 l~~~~~~~~~g~~~~-~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~ 548 (714)
........ . ..+.+.+...+.++... .+..+...++.+|..- .+++.|...|.++.... .
T Consensus 439 -------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~ 506 (552)
T KOG1550|consen 439 -------LDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A 506 (552)
T ss_pred -------HHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h
Confidence 00011111 1 22566677777766543 5788888999998774 46999999999998876 8
Q ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Q 005108 549 KALLRRAASNSK---LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 549 ~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~ 580 (714)
...+++|.++.. ..++..|.++|+++.+.+..
T Consensus 507 ~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 507 QALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 999999999954 12379999999999887654
No 340
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.04 E-value=0.00019 Score=69.34 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=67.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------CcchhhhCCccccceEEEE-eCCeEE-
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------SPGVAHAENVRIVPTFKIY-KNGSRM- 694 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~-~~G~~~- 694 (714)
.+..++.|+...|+.|+.+.|+|..+..+| ++.++.|++|. +..+++.++|..+|+++++ +++..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 457789999999999999999999999998 68888888884 4678999999999998766 666444
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.-..|. +.++|.+.|
T Consensus 199 pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 199 PVSQGFMSLDELEDRI 214 (215)
T ss_pred EEeeecCCHHHHHHhh
Confidence 445588 999988754
No 341
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.04 E-value=8.1e-06 Score=70.98 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=53.3
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHH---HHHhhC-CCcEEEEEecccCc-chhhhCCccccceEEEE-eCCeE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVE---TLCGRY-PSINFLKVDIDESP-GVAHAENVRIVPTFKIY-KNGSR 693 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~-~~~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~-~~G~~ 693 (714)
.+..+...+++++++|++.||+.|+.+...+- ++.... .++..+.+|.|... .+. ..+ ..+||++|+ .+|++
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCC
Confidence 34455567889999999999999999887541 222222 23444466655321 111 234 689999999 99999
Q ss_pred EEEEcCC
Q 005108 694 MKEIVCP 700 (714)
Q Consensus 694 ~~~~~g~ 700 (714)
+.++.|.
T Consensus 93 i~~i~Gy 99 (130)
T cd02960 93 RADITGR 99 (130)
T ss_pred ccccccc
Confidence 9999887
No 342
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.03 E-value=9.3e-06 Score=64.82 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=53.7
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhh-----CCccccceEEEEeCCeEEEEEcCCCHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA-----ENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~ 706 (714)
++.|+++||++|+.+.+.+.++. +.|-.+|+++.+..... +++..+|++ ++.+|.. +..++.++|+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~---l~~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF---LTNPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE---ecCCCHHHHH
Confidence 57899999999999999987653 45667888887766655 489999997 5778864 3466777777
Q ss_pred HHHh
Q 005108 707 HSVR 710 (714)
Q Consensus 707 ~~~~ 710 (714)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 7664
No 343
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.03 E-value=8.4e-06 Score=71.03 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=69.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc-cCcchhhhCC--ccccceEEEEeCCeEEEEEcC--C-
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID-ESPGVAHAEN--VRIVPTFKIYKNGSRMKEIVC--P- 700 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d-~~~~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g--~- 700 (714)
..+++++||+.||+.|+.+.|.+.++..+++. +.++.+|+. ..+.++..|+ +..+|++.++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 55788899999999999999999999999984 899999997 7899999999 999999999999988766665 3
Q ss_pred CHHHHHHHH
Q 005108 701 SRDMLEHSV 709 (714)
Q Consensus 701 ~~~~l~~~~ 709 (714)
....+....
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 555555443
No 344
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.02 E-value=1.1e-05 Score=73.98 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc----c----------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP----G---------------------- 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~----~---------------------- 672 (714)
.+++++.||+.||+ |....|.|+++..++. ++.++.|.++. .. +
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 46899999999999 9999999999999985 48888775421 00 0
Q ss_pred hhhhCC--ccccc-----------eEEEE-eCCeEEEEEcCC-CHHHHHHH
Q 005108 673 VAHAEN--VRIVP-----------TFKIY-KNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 673 l~~~~~--v~~~P-----------t~~~~-~~G~~~~~~~g~-~~~~l~~~ 708 (714)
.+..|+ +..+| |.+++ ++|+++.++.|. +.++|+..
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 111222 34567 45555 999999999999 88887654
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.02 E-value=0.0013 Score=69.73 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------HHHHHH
Q 005108 514 SVLYCNRAACWFKL------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW-----------------ADAVRD 570 (714)
Q Consensus 514 ~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~eA~~~ 570 (714)
..++..+|.-.... ++.++++..|+++++++|+...+|+.+|..+.+.=+. ..|+..
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 35566666666666 8889999999999999999999999998887554221 336677
Q ss_pred HHHHHHhCCC
Q 005108 571 FEVLRRELPD 580 (714)
Q Consensus 571 ~~~al~~~p~ 580 (714)
|-+++...++
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 7777777665
No 346
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.023 Score=60.06 Aligned_cols=348 Identities=10% Similarity=0.023 Sum_probs=185.9
Q ss_pred ccccCccccchhhhhc-------------------CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 220 SLAVGPENANVNRNRG-------------------GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS 280 (714)
Q Consensus 220 al~~~p~~~~~~~~~~-------------------~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 280 (714)
-|+.+|.+.++|..+. ..-|..+.+|.......+...+|+....+|.+++..--+ .+.|.
T Consensus 12 rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 4667788887776653 456778999999999999999999999999999875432 34443
Q ss_pred H-HHHHHHHCCCHHHHHHH----HHHHH---hcCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHhhcCCCChH
Q 005108 281 N-RAAALTGLGRIGEAVKE----CEEAV---RLDPNYWRAHQRLGSLLV---------RLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 281 ~-la~~~~~~g~~~~A~~~----~~~al---~~~p~~~~a~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~ 343 (714)
. +-.+....++...+... |+-++ -.++.....|...+..+. .+.+.+.-.+.|++++..+-..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2 33333444444433332 22222 245555556665554432 3346666777888888732221
Q ss_pred ---HHHHHHHHHHH----HHHhHHHHHcCCHHHHHHHHHHHHHc-----------------------------------C
Q 005108 344 ---EVHRLQVVEKH----LSKCTDARKVGDWKSALREGDAAIAA-----------------------------------G 381 (714)
Q Consensus 344 ---~~~~l~~~~~~----~~~a~~~~~~g~~~~Al~~~~~al~~-----------------------------------~ 381 (714)
-|......+.- ..+-.+.....+|..|...+++...+ +
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 12222222211 11112222333344444443333221 1
Q ss_pred CC------------------------CCHHHHHHHHHHHHHcCC--------------HHHHHHHhhccccCCCCCCCch
Q 005108 382 AD------------------------FSPQLSMCRVEALLKLHQ--------------LEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 382 p~------------------------~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~ 423 (714)
|- +.+++|+..+..+...++ .+++..+|++++..--..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~---- 326 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE---- 326 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----
Confidence 10 113333332222222233 455556666555322111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhC---cHHHHHHHHHHHhccCCCCHH-HHHHHHh-HH------HHHHHH--------
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALG---RFENAVTAAEKAGQIDPRNVE-VAVLLNN-VK------LVARAR-------- 484 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~-l~------~~~~~~-------- 484 (714)
....++.++..-...- +++.-.+.+++++.+...+.. +|+.+.+ +. .+....
T Consensus 327 ---------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r 397 (656)
T KOG1914|consen 327 ---------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR 397 (656)
T ss_pred ---------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC
Confidence 1223333333222222 255666677777655443322 2222211 10 000000
Q ss_pred --------HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC-HHHHHH
Q 005108 485 --------ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--QPNY-TKALLR 553 (714)
Q Consensus 485 --------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~ 553 (714)
.--.-|...++.+-|...|+-.++..++.+..-+.....+..+++-..|...|++++.. .++. ...|..
T Consensus 398 ~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 398 TRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred CcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 00112455677777888888888888777777777777777888888888888887765 3332 255666
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 554 RAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
.-..-..-|+....++.-++-....|.+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6666667777777777777777777744
No 347
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.99 E-value=0.0039 Score=67.48 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-KALLRRAASNSKLEKW 564 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~ 564 (714)
.+.-|...|+|+.|.++|.++-. ...-...|-+.|+|++|.+.-+++. .|... ..|...+.-+.+.|+|
T Consensus 771 iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 46777788888888888776532 2234456777788888877766653 33332 3444555555666665
Q ss_pred HHHHHHH
Q 005108 565 ADAVRDF 571 (714)
Q Consensus 565 ~eA~~~~ 571 (714)
.+|.+.|
T Consensus 841 ~eaeqly 847 (1636)
T KOG3616|consen 841 AEAEQLY 847 (1636)
T ss_pred hhhhhee
Confidence 5554443
No 348
>smart00594 UAS UAS domain.
Probab=97.98 E-value=2.1e-05 Score=68.95 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchH------HHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE-eC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPY------VETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY-KN 690 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~------l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~~ 690 (714)
....+....+..+|+|+++||..|..+... +.++..+ ++.++.+|++. ..+++..|++.++|++.++ ++
T Consensus 19 a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 19 AKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 334455567799999999999999987643 3333322 56677788775 4568999999999999888 77
Q ss_pred C-----eEEEEEcCC-CHHHHHHHH
Q 005108 691 G-----SRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 691 G-----~~~~~~~g~-~~~~l~~~~ 709 (714)
| +.+.++.|. +.++|...|
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 6 356778888 888887765
No 349
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00016 Score=71.22 Aligned_cols=168 Identities=11% Similarity=-0.016 Sum_probs=132.7
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCCHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRNVEV 470 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~ 470 (714)
.+.++...|++.+|...++++++..|.+ ..++..--.+++.+|+.+.-...+++.+.. +++-+-.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtD--------------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~ 174 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTD--------------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY 174 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchh--------------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence 4556677899999999999999999998 556666667888899999999999999976 7766544
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN---- 546 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 546 (714)
-+.-.. .+..+...|-|++|.+.-++++++++.+..+...++.++...|++.++.+...+--..-..
T Consensus 175 sYv~Gm---------yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml 245 (491)
T KOG2610|consen 175 SYVHGM---------YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML 245 (491)
T ss_pred HHHHHH---------HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH
Confidence 333221 2777889999999999999999999999999999999999999999999988765332111
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCCH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLR--RELPDDN 582 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al--~~~p~~~ 582 (714)
...-|..-|.++..-+.|+.|++.|++-+ ++..+|.
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 11345667888888899999999998643 3444554
No 350
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.95 E-value=3.4e-05 Score=72.45 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=67.3
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------------Ccchhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------------SPGVAH 675 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------------~~~l~~ 675 (714)
...++++.||++||+.|....+.+.++..+++ ++.|+.|.+|. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 34689999999999999999999999999986 58888887642 223467
Q ss_pred hCCccccceEEEE-eCCeEEEEEc---------CC-CHHHHHHHHhhh
Q 005108 676 AENVRIVPTFKIY-KNGSRMKEIV---------CP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 ~~~v~~~Pt~~~~-~~G~~~~~~~---------g~-~~~~l~~~~~~~ 712 (714)
.|+|..+|+++++ ++|+++.... +. +.+.++..|+..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 8999999998888 8999886531 22 567788777653
No 351
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00058 Score=64.55 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.|..-+.+|...++|++|..++.++.+-..++. ..+.-+..+-..+.+...+..+.|+..+|+++..+.-.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334456777888888888888888886655541 112224455666677777888899999999987543221
Q ss_pred H---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 468 V---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 468 ~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
. .+-..+ .++.-..+..+.++|+++|++++.+-..+ .+.+-..+.++.+..++++|-..+.
T Consensus 105 GspdtAAmal----------eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 105 GSPDTAAMAL----------EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred CCcchHHHHH----------HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 1 111112 34555677889999999999998864332 4667778899999999999988887
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Q 005108 539 QALLI------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL----PDDNEIAESLFHAQ 592 (714)
Q Consensus 539 ~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~L~~~~ 592 (714)
+-... .++....+.....+|.-..+|..|...|+..-++. +++....+.|..++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 65432 34444566677777788889999999999977653 44455555555444
No 352
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=2.3e-05 Score=54.68 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666553
No 353
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00026 Score=71.96 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 466 (714)
+|..+.....+.+..+.|..+|.++.+..+.. ..+|...|.+.+. .++.+.|..+|+.+++..|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 34556677777788999999999998665554 5678888998777 45666699999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+..+|..+ ...+...++.+.|..+|++++..-+... .+|......-.+.|+++...++.+++.+.
T Consensus 69 ~~~~~~~Y------------~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 69 DPDFWLEY------------LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HHHHHHH------------HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHH------------HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999988 7778899999999999999999866554 68888888889999999999999999999
Q ss_pred CCCCHH
Q 005108 544 QPNYTK 549 (714)
Q Consensus 544 ~p~~~~ 549 (714)
.|++..
T Consensus 137 ~~~~~~ 142 (280)
T PF05843_consen 137 FPEDNS 142 (280)
T ss_dssp TTTS-H
T ss_pred hhhhhH
Confidence 888543
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.92 E-value=0.0074 Score=68.78 Aligned_cols=302 Identities=14% Similarity=0.107 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHHcCCH
Q 005108 258 FGEALSMYDKAISLAPR----NAAFRSNRAAALT-GLGRIGEAVKECEEAVRLDPN--Y----WRAHQRLGSLLVRLGQV 326 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~ 326 (714)
...|+.+++-+++..+- .+.+++.+|.+|+ ...++++|..++++++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45678888888852221 2678888999888 789999999999999877633 2 33566778888888877
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHHcCC
Q 005108 327 ENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQL----SMCRVEALLKLHQ 401 (714)
Q Consensus 327 ~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~----~~~la~~~~~~g~ 401 (714)
. |+..+++.++..+..........-.++ +...+...+++..|++.++....... .....+ ....+.++...+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 7 999999988733331111111111111 12223333899999999999887752 112222 2224566677777
Q ss_pred HHHHHHHhhccccC------CCCCCCchhhhhhhhhhhHHHHHHH--HHHHHHhCcHHHHHHHHHHH---hccCCCCH--
Q 005108 402 LEDAESSLSNIPKI------EPSTVSSSQTRFFGMLSEAYTFFVR--AQIEMALGRFENAVTAAEKA---GQIDPRNV-- 468 (714)
Q Consensus 402 ~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a---l~~~p~~~-- 468 (714)
.+++++.++++... ++.. .. ....+|..+ -.++...|+++.+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~-~~---------~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSV-HI---------PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCC-Cc---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 78888877766321 2221 11 112233333 33455567766666555442 21111100
Q ss_pred -----------------------H---HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-------CCC--
Q 005108 469 -----------------------E---VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-------PSN-- 513 (714)
Q Consensus 469 -----------------------~---~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~-- 513 (714)
. -|.....+. +..+.--|......+..++|.++++++++.- +..
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~-~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY-ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHH-HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 0 000000010 1111122556666777768888887777631 110
Q ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHhccHHHH
Q 005108 514 -----------------SVLYCNRAACWFKLGQWERSVEDSNQALLIQ---PN------YTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 514 -----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~eA 567 (714)
..+++..+.+.+-+++|.+|...++.+.+.. |. .+..++..|..+...|+.+.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 1344556778888999999999999887642 22 367788999999999999999
Q ss_pred HHHHH
Q 005108 568 VRDFE 572 (714)
Q Consensus 568 ~~~~~ 572 (714)
..+|.
T Consensus 424 ~~~y~ 428 (608)
T PF10345_consen 424 LYQYQ 428 (608)
T ss_pred HHHHh
Confidence 99998
No 355
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0002 Score=67.57 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRN----------AAFRSNRAAALTGLGRIGEAVKECEEA 302 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (714)
....+...|+.+++.|+|.+|...|..|+.. .|.. ...+.+.+.|+...|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4678889999999999999999999998742 3443 456889999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+..+|.+..+|+..|.++...-+..+|...|.+++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999886
No 356
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0036 Score=70.28 Aligned_cols=273 Identities=16% Similarity=0.099 Sum_probs=171.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------HH----------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 248 MGNELYRKGCFGEALSMYDKA------IS----------------LAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~a------l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
+|......+-|++|...|++- ++ ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 455555666667776666542 11 01245788999999999999999999988775
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 306 DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 306 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
+++..|.....+..+.|.|++-++++.-+.+. .++.....+ ...|.+.++..+-.+.+ .+|+
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL---------i~AyAkt~rl~elE~fi-----~gpN- 1193 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL---------IFAYAKTNRLTELEEFI-----AGPN- 1193 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH---------HHHHHHhchHHHHHHHh-----cCCC-
Confidence 56778888888888999999998888766552 222211111 11234444443332221 2333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
..-....|.-.+..+.|+.|.-+|..+ ..|..++..+..+|+|+.|+...++|-..
T Consensus 1194 -~A~i~~vGdrcf~~~~y~aAkl~y~~v----------------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~- 1249 (1666)
T KOG0985|consen 1194 -VANIQQVGDRCFEEKMYEAAKLLYSNV----------------------SNFAKLASTLVYLGEYQGAVDAARKANST- 1249 (1666)
T ss_pred -chhHHHHhHHHhhhhhhHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHHHHHhhhccch-
Confidence 222334677777888888887777543 24677788888888888888887776432
Q ss_pred CCCHHHHHHHHh------------------HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 465 PRNVEVAVLLNN------------------VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 465 p~~~~~~~~l~~------------------l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
..|..... +--++.+..+...|...|-|++-+..++.++-+...+...+..+|.+|.+
T Consensus 1250 ----ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1250 ----KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ----hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 12211100 01123344567778889999999999999998888788888888888876
Q ss_pred hCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Q 005108 527 LGQWERSVEDSNQALLI--------QPNYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
- ++++-.+.++--... .-+....|..+-.+|.+-..|+.|.-
T Consensus 1326 y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4 355555555432211 01123456666667776666766643
No 357
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5.3e-06 Score=77.18 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=75.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~ 706 (714)
.....+++||+.||.+|.++...++.+.+..+++.|++++.++.++++..+.|..+|.++++..|+.+.++.|+.+..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~ 95 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLV 95 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHHH
Confidence 45578899999999999999999999999888899999999999999999999999999999999999999999555454
Q ss_pred HHHhh
Q 005108 707 HSVRH 711 (714)
Q Consensus 707 ~~~~~ 711 (714)
..+..
T Consensus 96 ~~~~~ 100 (227)
T KOG0911|consen 96 SKVEK 100 (227)
T ss_pred HHHHH
Confidence 44443
No 358
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.87 E-value=3.3e-05 Score=53.91 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA 283 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la 283 (714)
.++.+|..|...|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555544
No 359
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0029 Score=70.90 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=139.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
+.+..|..+|.+..+.+...+|++.|-++ .||.... .......+.|.|++-++++..+-+...+. .
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika---dDps~y~---------eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~ 1167 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYL---------EVIDVASRTGKYEDLVKYLLMARKKVREP--Y 1167 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHH---------HHHHHHHhcCcHHHHHHHHHHHHHhhcCc--c
Confidence 34778999999999999999999988765 4454432 22334677899999999988887764432 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
+-..+..+|.+.++..+-.+++. .|+. + -....|.-++..+.|+.|.-+|...-
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~-----gpN~--------------A-~i~~vGdrcf~~~~y~aAkl~y~~vS------ 1221 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIA-----GPNV--------------A-NIQQVGDRCFEEKMYEAAKLLYSNVS------ 1221 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhc-----CCCc--------------h-hHHHHhHHHhhhhhhHHHHHHHHHhh------
Confidence 22345667888888877766542 4443 2 24456778888888888877775432
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-----------CC--------------CHHHHHHHHH
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-----------PS--------------NSVLYCNRAA 522 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~--------------~~~~~~~la~ 522 (714)
-|.. ++..+...|+|+.|.+.-++|-... .. +++-+-.+..
T Consensus 1222 --N~a~------------La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1222 --NFAK------------LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIE 1287 (1666)
T ss_pred --hHHH------------HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHH
Confidence 2222 2777888899999998888764321 00 1233344556
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 572 (714)
.|...|-+++-+..++.++-+..-+...+..||.+|.+- ++++-.++++
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 667777788888887777777666666667777776553 4455444443
No 360
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.85 E-value=0.011 Score=62.50 Aligned_cols=281 Identities=17% Similarity=0.117 Sum_probs=159.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD--------PNYWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~ 318 (714)
.+.+..+.|+|+. +.+.+...+ +.....+..+......++++++..+.+++...- .......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566778888888 333333222 234666677777778899998888888876531 111111122222
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHH-HHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD-ARKVGDWKSALREGDAAIA--AGADFSPQLSMCRVEA 395 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~-~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~la~~ 395 (714)
-+..+.+.+++..+....... +.... ..+..+-.+-.. ......|+.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~--~~~~~--~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN--PQDLK--SLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc--HHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 222334444444444222110 11111 011111111111 1111112222222122222 1133445667789999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCC-----HH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRN-----VE 469 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~ 469 (714)
..+.|+++.|...+.++...++.... ....+.+..+.++...|+.++|+..++..+.. .... ..
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~----------~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSES----------LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccC----------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 99999999999999999887643310 02456778899999999999999999888872 1111 00
Q ss_pred HH----------------HHHHhHHHHHHHHHHHhHHhhC------cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 005108 470 VA----------------VLLNNVKLVARARARGNDLFKS------ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 470 ~~----------------~~l~~l~~~~~~~~~g~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 527 (714)
.. ........+..+..+|...... +..++++..|.++++++|.....|+.+|..+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00 0000111223344456655566 8899999999999999999999999998887654
Q ss_pred CC-----------------HHHHHHHHHHHHHhCCC
Q 005108 528 GQ-----------------WERSVEDSNQALLIQPN 546 (714)
Q Consensus 528 g~-----------------~~~A~~~~~~al~~~p~ 546 (714)
=+ ...|+..|-+++...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 306 LESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 22 13466777777777666
No 361
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.84 E-value=0.008 Score=62.34 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH---hCcHHHHHHHHHH-H
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA---LGRFENAVTAAEK-A 460 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a 460 (714)
..++..++-..|....+|+.-+++.+.+-.+.-.+. .....+.+..|.++.+ .|+.++|+..+.. .
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~----------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDV----------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccch----------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 455566677889999999999999888766521110 0115567778888888 9999999999999 5
Q ss_pred hccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 461 l~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
....+.+++.+..+..+..-.-. -..+......++|+.+|.++.+++|+ ...-.|++.++...|.-.+....+++.
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~---~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFL---ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHH---HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence 56677788888877444211100 00011233589999999999999964 444456677777777544333222222
Q ss_pred H-Hh-----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 541 L-LI-----------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 541 l-~~-----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
. ++ .-.+...+-.++.+..-.|++++|++.+++++++.|..=+.
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 2 11 22344566677888889999999999999999998765443
No 362
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.82 E-value=0.072 Score=57.51 Aligned_cols=285 Identities=13% Similarity=0.016 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHhh
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV-RLGQVENARRHLCLS 336 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-~~g~~~~A~~~~~~a 336 (714)
.+.+...|+..+...|.....|...|..-.++|..+++.+.|++++.--|.....|..+-..+. ..|+.+.-...|+.|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3556667777777788777788888888888888888888888888877776666655443332 345555656666666
Q ss_pred cCCCC-----hHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH--------------------
Q 005108 337 GQQAD-----PTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC-------------------- 391 (714)
Q Consensus 337 l~~~~-----~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-------------------- 391 (714)
..... ..-|...-.. ....+++..-...|++.++.--......+..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~---------en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEF---------ENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred HHhcccchhccHHHHHHHHH---------HhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 54111 1111111111 1233444444444444443311100000000
Q ss_pred -------------------------------------------------HHHHHHHcCCHHHHHHHhhccccCCCCCCCc
Q 005108 392 -------------------------------------------------RVEALLKLHQLEDAESSLSNIPKIEPSTVSS 422 (714)
Q Consensus 392 -------------------------------------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 422 (714)
.=.++.......+.+..++..++..-...
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv-- 289 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV-- 289 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc--
Confidence 00111122222222233333322110000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHH
Q 005108 423 SQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQA 502 (714)
Q Consensus 423 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~ 502 (714)
+ .........|..........|+++...-.|++++---....+.|..+ +......|+.+-|...
T Consensus 290 ---k-pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky------------~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 290 ---K-PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKY------------ARWMESSGDVSLANNV 353 (577)
T ss_pred ---C-cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHH------------HHHHHHcCchhHHHHH
Confidence 0 00012234566667777888999999999999987777777888766 5556666888888888
Q ss_pred HHHhhcc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005108 503 YGEGLRF-DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 503 ~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
+..+.++ .|..+.+...-+..-...|++..|...+++..+..|+...+-+.......+.|+.+.+..
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 8887776 466677777788888888999999999999988778888888888888888888888874
No 363
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.04 Score=57.18 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=114.0
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchh-----hhhhhhh----------------------------hhHHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQ-----TRFFGML----------------------------SEAYTFFVRAQ 442 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~----------------------------~~~~~~~~la~ 442 (714)
..+.++...|.+++.-+..++|...-... ..+.+.+ ..+..+..-|.
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45667788888888877778887521100 0000000 11222344556
Q ss_pred HHHHhCc-HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHH--HHHH------hh---ccC
Q 005108 443 IEMALGR-FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ--AYGE------GL---RFD 510 (714)
Q Consensus 443 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~--~~~~------al---~~~ 510 (714)
-+.+.|. -++|+.+++.+++..+.+.++...... +-...|.+|+. .+.+ .+ .+.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--------------fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--------------FVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 6677777 889999999999998888765543211 11111222221 1111 11 122
Q ss_pred ---CCCHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH--
Q 005108 511 ---PSNSVLYCNRA--ACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE-- 583 (714)
Q Consensus 511 ---p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-- 583 (714)
-.+.++-+.++ .-++.+|+|.++.-+..=..++.| .+.++..+|.+++...+|++|.+++... |.+.+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhH
Confidence 23445555554 456789999999999999999999 7999999999999999999999988643 33443
Q ss_pred ---HHHHHHHHHHHhhh
Q 005108 584 ---IAESLFHAQVSLKK 597 (714)
Q Consensus 584 ---~~~~L~~~~~~l~~ 597 (714)
+...+.-++..+.+
T Consensus 529 dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 529 DSKVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44555555555543
No 364
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=1.2e-05 Score=84.85 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=72.9
Q ss_pred ceeeehhhhHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEeccc--CcchhhhCCccccc
Q 005108 611 EVEEVSSLEQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDE--SPGVAHAENVRIVP 683 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~--~~~l~~~~~v~~~P 683 (714)
+.......+.|..++-... ..+|.|++.|||+|+.+.|.++++++... -+.+..||+-+ +..+|..|+|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 3344445567777665544 78999999999999999999999998763 36677888764 77899999999999
Q ss_pred eEEEEeCCeEE----EEEcCC-CHHHHHHHHh
Q 005108 684 TFKIYKNGSRM----KEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 684 t~~~~~~G~~~----~~~~g~-~~~~l~~~~~ 710 (714)
++..|+-+..- ..+.|+ ...++++.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~ 150 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLI 150 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHH
Confidence 99999544222 234455 4555555543
No 365
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.80 E-value=7.4e-05 Score=67.82 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc----------------------C-cchhhhCCccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------S-PGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~-~~l~~~~~v~~-- 681 (714)
.+.+++.||+.| |+.|....|.+.++..+++++.++-|.+|. . ..++.+|+|..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 458999999988 699999999999999999888888888753 1 34567888864
Q ss_pred ----cceEEEE-eCCeEEEEEcCC
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.|+.+++ ++|+++...+|.
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECC
Confidence 6777766 899999998876
No 366
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=2.5e-05 Score=50.78 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 005108 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAV 296 (714)
Q Consensus 265 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (714)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 367
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=4.1e-05 Score=81.81 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=76.2
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCCeE-EEEEcC
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR-MKEIVC 699 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~-~~~~~g 699 (714)
........+|.|+++||++|+.+.|.++++...+ ..+.+..+|++....++..++|+..||+++|++|.. .....|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSG 237 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccc
Confidence 3345678899999999999999999999998876 358889999998899999999999999999988888 555666
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.+.+..++...
T Consensus 238 ~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKK 251 (383)
T ss_pred cccHHHHHHHHHhh
Confidence 6 889999888764
No 368
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0022 Score=63.44 Aligned_cols=167 Identities=16% Similarity=0.065 Sum_probs=112.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 005108 279 RSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358 (714)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a 358 (714)
....+.++...|++.+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+..-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w------------------ 167 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW------------------ 167 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc------------------
Confidence 33445667778888888888888888888887777777777777777766666665554311
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFS--PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYT 436 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 436 (714)
+++.. ..+.-.++..+...|-|++|.+..++++++++.+ ..+
T Consensus 168 ----------------------n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D--------------~Wa 211 (491)
T KOG2610|consen 168 ----------------------NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD--------------CWA 211 (491)
T ss_pred ----------------------CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc--------------hHH
Confidence 22211 2233346777888888888888888888888887 777
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
...++.++...+++.++.++..+--..-. . .+.. ..-.+-..+..+...+.|+.|++.|..-+
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~--s~ml-----asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWR-Q--SWML-----ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchh-h--hhHH-----HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 78888888888888888888776432211 1 1110 01112233667777788888888887543
No 369
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.76 E-value=8.3e-05 Score=68.32 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec--------ccCcc---hh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI--------DESPG---VA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~--------d~~~~---l~-------------------- 674 (714)
.++++|.||++||++|....|.+.++..+|. ++.++.|++ +..+. .+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 4578899999999999999999999999985 588887764 11000 11
Q ss_pred ----hhCCc---cccce-----EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----HAENV---RIVPT-----FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----~~~~v---~~~Pt-----~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|.+ ..+|+ |+|-++|+++.++.|. +.++|+..|+++
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 11222 24784 5555999999999999 999999888764
No 370
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.76 E-value=8.8e-05 Score=67.02 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=64.8
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcccc-
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIV- 682 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~- 682 (714)
.+++++.|| +.||+.|....+.+.++..++. ++.++.|.+|. ...+++.|+|..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 468899999 5899999999999988888774 57777766553 3456788999988
Q ss_pred --------ceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 005108 683 --------PTFKIY-KNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 683 --------Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
|+++++ ++|+++..+.|. ..+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 887777 789999999999 666666554
No 371
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.74 E-value=6.6e-05 Score=57.07 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=51.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCC
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNG 691 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G 691 (714)
++.|+..||+.|..+.+.+.++.....++.+..+|++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999984444679999999999877655 8999999999999887
No 372
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.74 E-value=2.9e-05 Score=50.48 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 537 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 373
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.74 E-value=0.00065 Score=66.77 Aligned_cols=83 Identities=16% Similarity=0.334 Sum_probs=67.0
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----------cchhhhCCccccceEEEE-eCCeEEEE
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----------PGVAHAENVRIVPTFKIY-KNGSRMKE 696 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 696 (714)
...++.|+...|+.|+++.|+|+.+..+|. +.++.|++|.. ..+++.+||..+|+++++ ++++.+..
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 367899999999999999999999999985 77888888864 337889999999987655 77555544
Q ss_pred -EcCC-CHHHHHHHHhhh
Q 005108 697 -IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 -~~g~-~~~~l~~~~~~~ 712 (714)
-.|. +.++|.+.|-.+
T Consensus 230 v~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 230 LAYGFISQDELKERILNV 247 (256)
T ss_pred EeeccCCHHHHHHHHHHH
Confidence 4488 999998877553
No 374
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.73 E-value=7.8e-05 Score=70.62 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=61.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----C----c--------c-------h----------h
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----S----P--------G-------V----------A 674 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----~----~--------~-------l----------~ 674 (714)
++++.+|++||++|....|.++++..+|. ++.++-|++++ . + + + +
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~ 122 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTH 122 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCC
Confidence 33456699999999999999999999885 48888886431 0 0 0 0 0
Q ss_pred hh---------------CCccccce----EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 HA---------------ENVRIVPT----FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~~---------------~~v~~~Pt----~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.. +++..+|+ |+|-++|+++.+++|. +.+.+++.|.++
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~l 180 (183)
T PTZ00256 123 EIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180 (183)
T ss_pred HHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 01 24568894 5555999999999999 888888888764
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.73 E-value=0.005 Score=68.96 Aligned_cols=271 Identities=12% Similarity=0.015 Sum_probs=175.3
Q ss_pred CCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRK-----GCFGEALSMYDKAISL-----APRNAAFRSNRAAALTGLG-----RIGEAVKECEEA 302 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~-----g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a 302 (714)
.-.+......+|.+|+.- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++
T Consensus 240 ~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 240 KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 446778888888888765 6899999999999771 1125567889999999853 788899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLG---QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
-+.. ++.+.+.+|.++..-. ++..|.++|..+.+.........+... +..+ .....+...|..++.++.+
T Consensus 320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~---y~~G--~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC---YELG--LGVERNLELAFAYYKKAAE 392 (552)
T ss_pred HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH---HHhC--CCcCCCHHHHHHHHHHHHH
Confidence 8764 5678889999988765 578999999998765555443322222 1111 2244688999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH-cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLK-LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFENAV 454 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 454 (714)
.+.- ...+. ++..+.. .++++.+.-.+....+..-..... .+............ ..+.+.+.
T Consensus 393 ~g~~--~A~~~-~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~----------~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 393 KGNP--SAAYL-LGAFYEYGVGRYDTALALYLYLAELGYEVAQS----------NAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred ccCh--hhHHH-HHHHHHHccccccHHHHHHHHHHHhhhhHHhh----------HHHHHHHhccccccccccccchhHHH
Confidence 8732 21222 3333322 277777766665554443332000 00000000000111 12445555
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC----cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS----ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK---- 526 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 526 (714)
..+.++.... +..+... +|.+|+.- .+++.|...|..+.... ....+++|.++..
T Consensus 460 ~~~~~a~~~g--~~~a~~~------------lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~ 522 (552)
T KOG1550|consen 460 SLYSRAAAQG--NADAILK------------LGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGI 522 (552)
T ss_pred HHHHHHHhcc--CHHHHhh------------hcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCc
Confidence 5555554332 2333333 37777654 46999999999998876 8999999999875
Q ss_pred hCCHHHHHHHHHHHHHhCCC
Q 005108 527 LGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~ 546 (714)
.. +..|.++|.++.+.+..
T Consensus 523 ~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 523 KV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred ch-hHHHHHHHHHHHhcCch
Confidence 33 89999999999887654
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=2.2e-05 Score=77.72 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
......+...+..|++++|++.|..+|+++|.....|..++.+++++++...|+..|..+++++|+...-|-..+.....
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 34556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 323 LGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+|+|++|...|..+.+ ..++.....+..+
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSATLKEV 224 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 9999999999998876 4444444444444
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.70 E-value=0.12 Score=55.96 Aligned_cols=336 Identities=10% Similarity=-0.096 Sum_probs=217.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcCCCc---H
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-AAALTGLGRIGEAVKECEEAVRLDPNY---W 310 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~---~ 310 (714)
..-.|---..|...|..-++.|..+.+++.|++++.--|.....|... +.+--..|+.+.-...|++|+.....+ .
T Consensus 72 L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~ 151 (577)
T KOG1258|consen 72 LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSD 151 (577)
T ss_pred HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhcc
Confidence 335666777888999999999999999999999999999887777765 344445677777778888887764332 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH------------------HHHHHHH---------------------
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE------------------VHRLQVV--------------------- 351 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~l~~~--------------------- 351 (714)
..|..+......++++..-...|++.++.+-... ......+
T Consensus 152 ~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e 231 (577)
T KOG1258|consen 152 PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE 231 (577)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence 4454554445556666666666665544111100 0000000
Q ss_pred --HHH----------------------HHHhHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHHHcC
Q 005108 352 --EKH----------------------LSKCTDARKVGDWKSALREGDAAIAA-----GADFSP--QLSMCRVEALLKLH 400 (714)
Q Consensus 352 --~~~----------------------~~~a~~~~~~g~~~~Al~~~~~al~~-----~p~~~~--~~~~~la~~~~~~g 400 (714)
+.. ...-.++.....+.+.+..++..++. .|.... ..|..........|
T Consensus 232 ~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 232 ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 000 00001111112222222223322221 222222 22344556667889
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKL 479 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~ 479 (714)
+++...-.|++++----.. ...|...+......|+.+-|-..+..+.++. +..+......
T Consensus 312 ~~~~~~~l~ercli~cA~Y--------------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~----- 372 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPCALY--------------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE----- 372 (577)
T ss_pred cHHHHHHHHHHHHhHHhhh--------------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH-----
Confidence 9999999999887544443 4578888888888899999998888888765 4444444443
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHhCCCC---HHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE---DSNQALLIQPNY---TKALLR 553 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~ 553 (714)
+......|++..|..+|++...-.|+...+-...+....++|+.+.+.. ++.....-..+. ...+..
T Consensus 373 -------a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 373 -------ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred -------HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 6667778999999999999998889988888888888899999999884 333333221111 233444
Q ss_pred HHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 554 RAASN-SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 554 la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.+... .-.++.+.|...+.++++..|.+...+..+........
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45443 44578899999999999999999988887776655444
No 378
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00015 Score=63.08 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=69.8
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHH---HHHhhC-CCcEEEEEeccc----------------CcchhhhCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVE---TLCGRY-PSINFLKVDIDE----------------SPGVAHAEN 678 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~-~~~~~~~vd~d~----------------~~~l~~~~~ 678 (714)
+..+.+...+...++.|..+.|..|.++...+. ++.+-+ +.+.++.+++.. -++||+.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 444556666778899999999999998876542 233322 346666666543 347899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+++|||++| ++|+.+..+-|. .++++...++-
T Consensus 113 vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 113 VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999999 899999999999 88877665543
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.68 E-value=0.048 Score=61.39 Aligned_cols=310 Identities=14% Similarity=-0.018 Sum_probs=184.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----cHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-----YWR 311 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~ 311 (714)
.+.-.+.+..-+..+...|...+|+.+.-.| .+|.. .......+.-++..++.. .+..+++.-|. ++.
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~ 416 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPR 416 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCch
Confidence 3445777888888888999999999886655 12221 112222233344444433 23333333332 355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----C
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADP--TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF----S 385 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~----~ 385 (714)
.....+.......++.+|...+.++...... .........+..--++.+....++.++|++..+.++..-|.. .
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 6677788888899999999888877651111 111122223333445667788999999999999999886642 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc--HHHHHHHHHHHhc-
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR--FENAVTAAEKAGQ- 462 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~- 462 (714)
...+..++.+..-.|++++|..+...+.+..... ........+.+..+.++..+|+ +.+....|...-.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--------~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQH--------DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445568899999999999999999887764332 1112234566677888888883 3333333333221
Q ss_pred ---cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----CCCC--H-HHHHHHHHHHHHhCCHHH
Q 005108 463 ---IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----DPSN--S-VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 463 ---~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~ 532 (714)
..|...-.... ++.++...-+++.+.....+.++. .|.. . ..++.++.+++..|++++
T Consensus 569 ~l~q~~~~~f~~~~------------r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 569 HLEQKPRHEFLVRI------------RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HhhhcccchhHHHH------------HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 12222111111 133333333355555555555543 2322 2 233589999999999999
Q ss_pred HHHHHHHHHHhCCCC-H------HHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 533 SVEDSNQALLIQPNY-T------KALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 533 A~~~~~~al~~~p~~-~------~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
|...+.+...+.-+. + .++.-........|+.++|.....+
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999887643221 1 1112222333566888888877766
No 380
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.67 E-value=0.00011 Score=58.34 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=55.9
Q ss_pred eecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcC-C-CHHHHHHHHh
Q 005108 635 FKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC-P-SRDMLEHSVR 710 (714)
Q Consensus 635 f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g-~-~~~~l~~~~~ 710 (714)
+..++|+.|..+...++++..++. +.+--+|+.+.+++ ..|||+.+|+++| ||+.+ +.| . +.++|+++|+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 357779999999999999998884 77777778677777 9999999999944 88754 467 4 9999999885
No 381
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=8.6e-05 Score=48.44 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 382
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.64 E-value=0.0018 Score=58.97 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSN----------------------SVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.|......++.+.++..+++++.+...+ ..++..++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3666677888999999999999874321 244556788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 544 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|.+..++..+..+|..+|+..+|++.|+++.+.
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988654
No 383
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.64 E-value=0.00027 Score=65.82 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
.+.+++.||+.| |+.|....|.+.++..++.++.++-|.+|. ...++..|+|...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 458899999999 999999999999999888778887776653 12568899998877
Q ss_pred ---------eEEEE-eCCeEEEEEcCC------CHHHHHHHH
Q 005108 684 ---------TFKIY-KNGSRMKEIVCP------SRDMLEHSV 709 (714)
Q Consensus 684 ---------t~~~~-~~G~~~~~~~g~------~~~~l~~~~ 709 (714)
+.+++ ++|+++...++. ..+++.+.|
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 66666 899999887643 345554444
No 384
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0033 Score=61.75 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=101.3
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
..+.++-|...+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+.
T Consensus 124 ~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-- 201 (304)
T COG3118 124 QFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-- 201 (304)
T ss_pred HHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--
Confidence 334445555677778888899999999999999999999999999999999999999999999888876542222111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
.+.. ....++.+.++-..++... +++.+..+|++ .+..+.
T Consensus 202 ~~~~----------l~a~i~ll~qaa~~~~~~~-----------------------------l~~~~aadPdd-~~aa~~ 241 (304)
T COG3118 202 AAHG----------LQAQIELLEQAAATPEIQD-----------------------------LQRRLAADPDD-VEAALA 241 (304)
T ss_pred HHHH----------HHHHHHHHHHHhcCCCHHH-----------------------------HHHHHHhCCCC-HHHHHH
Confidence 1111 1112344444433333222 24455667763 455556
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCC
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
+|..|...|+.++|++.+-..++.+-..
T Consensus 242 lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 242 LADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 8999999999999999888888776554
No 385
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.58 E-value=0.00013 Score=57.23 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=51.3
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC----CccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE----NVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~----~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
++.|+.+||+.|..+...+.+. ++.|..+|++..+.....+ ++..+|++++ +| ..+.|++.++|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 4678899999999998887662 5677888888766554443 7899999875 45 3667888888877
Q ss_pred HH
Q 005108 708 SV 709 (714)
Q Consensus 708 ~~ 709 (714)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 54
No 386
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.58 E-value=3e-05 Score=62.70 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=48.0
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHH---HHHHhh-CCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGR-YPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+...+++++|+|+++||+.|+.+...+ .++... ..++.+++||+++.......++ .++|+++|+.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 344455678999999999999999988655 233331 2468899999987555432222 6699999873
No 387
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.58 E-value=0.00034 Score=65.68 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....+.|.++..++. ++.++.|.+|. ...+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 358899999 7999999999999999988874 46666665442 2235678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+.+++ ++|+++...++. +.+++.+.|+++
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8886 57777776 899999988654 457777777664
No 388
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.57 E-value=0.00018 Score=46.90 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555544444
No 389
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.012 Score=63.55 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=82.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV-EKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 305 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~-~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
.+| ++..|..+|......-.++-|...|-+...-........+..+ ..-..++.+....|++++|.+.|-.+-..+
T Consensus 688 dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 688 DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 344 4677777777777777777777776655432222212222211 223445566666788888888886544322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
....++.++|+|-...++++..-.-+.+. ....++..+|..+..+..+++|.++|.+.-
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~------------~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDE------------GKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 13456777888888777776543322221 224578888888888888888888887754
No 390
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.0033 Score=68.78 Aligned_cols=169 Identities=15% Similarity=0.003 Sum_probs=127.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRN-AAF------RSNRAAALT----GLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
..+....--.||-+.+++.+.++.+..--. +.+ |+.....+. .....+.|.+.++...+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444556799999999999997732111 111 111111111 245678999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
..|+++...|+.++|++.|++++.. ...+..+. .-.++.+++++....+|++|..++.+..+.+.-....+.+..|.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~-~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES--QSEWKQLH-HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHH-HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999999999999999998741 22233333 24578899999999999999999999999877656666777899
Q ss_pred HHHHcCCH-------HHHHHHhhccccCCC
Q 005108 395 ALLKLHQL-------EDAESSLSNIPKIEP 417 (714)
Q Consensus 395 ~~~~~g~~-------~~A~~~~~~al~~~p 417 (714)
++...++. ++|.++|.++..+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999 888888888765443
No 391
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.54 E-value=0.00016 Score=47.14 Aligned_cols=32 Identities=34% Similarity=0.677 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPR 274 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~ 274 (714)
..|+.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 392
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.52 E-value=0.00018 Score=58.60 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=54.9
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc----chhhhCC--ccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP----GVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
.++.|..+||+.|.+....|+++..++.++.+..+|+++.. ++....+ +..+|+++ .||+.+. |+ ++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~--~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC--TD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH--HH
Confidence 36778999999999999999999988778899999998642 4544444 58999975 5887643 33 44
Q ss_pred HHHHHhh
Q 005108 705 LEHSVRH 711 (714)
Q Consensus 705 l~~~~~~ 711 (714)
|.+.++.
T Consensus 75 ~~~~~~~ 81 (85)
T PRK11200 75 FEAYVKE 81 (85)
T ss_pred HHHHHHH
Confidence 5555543
No 393
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.52 E-value=0.00024 Score=46.25 Aligned_cols=33 Identities=33% Similarity=0.667 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN 275 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~ 275 (714)
+.++.+|.+++..|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455566666666666666666666666666653
No 394
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.52 E-value=0.00014 Score=64.18 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCceEEEeecC-CCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFKSA-SNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..+++++.||.. ||+.|....+.+.++..+++ ++.++.|..+. ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 346899999998 99999999999999998885 68898888764 44568899999
Q ss_pred ----ccceEEEE-eCCeEEE
Q 005108 681 ----IVPTFKIY-KNGSRMK 695 (714)
Q Consensus 681 ----~~Pt~~~~-~~G~~~~ 695 (714)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 99988777 8888775
No 395
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.52 E-value=0.019 Score=59.54 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHhhcC---CCChHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRL----DPNYWRAHQRLGSLLVR---LGQVENARRHLCLSGQ---QADPTEV 345 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~---~~~~~~~ 345 (714)
+....++-.+|....+|+.-++..+..-.+ -++.....+.+|.++.+ .|+.++|+..+..++. ..+++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556677777899999999988888877666 34567778888999988 8999999999988665 3333333
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc-cCCCCCCCchh
Q 005108 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP-KIEPSTVSSSQ 424 (714)
Q Consensus 346 ~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 424 (714)
-....+....-...........++|+..|.++.+.+++..+.+ +++.++...|...+....++++. ++..-- ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI--N~AtLL~~~g~~~~~~~el~~i~~~l~~ll---g~ 295 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI--NAATLLMLAGHDFETSEELRKIGVKLSSLL---GR 295 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHcCCcccchHHHHHHHHHHHHHH---Hh
Confidence 3333333222221112234458999999999999997654333 45666666665333322222211 000000 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 425 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
........+.+.+-.++.+..-.|++++|+..++++++..|........+
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 00011112345566777888889999999999999999987765544433
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.49 E-value=0.13 Score=58.16 Aligned_cols=286 Identities=15% Similarity=0.030 Sum_probs=169.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY- 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 309 (714)
.++......+.....+.++.+|..+..++...-+. .....-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 36777788899999999999999999998775443 14555667889999999999999999999887664
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHH----
Q 005108 310 ----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD--WKSALREGDAAIA---- 379 (714)
Q Consensus 310 ----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~--~~~Al~~~~~al~---- 379 (714)
..++..++.+..-.|++++|+.+...+.+.....+.. .-.+-..+..+.++...|+ +.+....|...-.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~-~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY-HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 5577888999999999999999888775411111111 1112233445556666673 2233333322221
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
..|-. .......+.++...-+++.+.....+.++......... ......++.++.+++..|++++|...+.+
T Consensus 572 q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~-------~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 572 QKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP-------LLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred hcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch-------hHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 12221 11122233333333336777666666665543321110 11122346899999999999999999998
Q ss_pred HhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHH
Q 005108 460 AGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 460 al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 534 (714)
...+.-+. +.+++. +............+|+.++|.....+...-+-.+ ...+.+....-..+|-..+|.
T Consensus 644 ~~~l~~~~~~~~~~~------a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae 717 (894)
T COG2909 644 LERLLLNGQYHVDYL------AAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAE 717 (894)
T ss_pred HHHHhcCCCCCchHH------HHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHH
Confidence 76543322 111111 1111223455667899999888887743322111 122333444444555555555
Q ss_pred HHHHHH
Q 005108 535 EDSNQA 540 (714)
Q Consensus 535 ~~~~~a 540 (714)
......
T Consensus 718 ~al~~l 723 (894)
T COG2909 718 LALDEL 723 (894)
T ss_pred HHHHHH
Confidence 544443
No 397
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.48 E-value=0.0022 Score=58.27 Aligned_cols=94 Identities=26% Similarity=0.196 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRN----------------------AAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
.+...|......++...++..+++++.+...+ ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34455777778899999999999999874321 34556677888899999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 302 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
++..+|.+..+|..+..+|...|+..+|++.|++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999997763
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.079 Score=65.65 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=78.9
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC----------C------
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-PN----------Y------ 547 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------ 547 (714)
+.|.+..+.|+++.|..++-+|.+.. -+.++...|..++..|+-..|+..+++.++.+ |+ .
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 44889999999999999999998876 57899999999999999999999999999653 32 1
Q ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKW--ADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
..+.+.++......+++ ++-+++|..+.+++|....-...+++-+.
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 12333344444444543 34578899999999966555555543333
No 399
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.43 E-value=0.00066 Score=62.43 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=59.2
Q ss_pred CCceEEEeecC-CCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcccc-
Q 005108 628 PGVSVVHFKSA-SNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIV- 682 (714)
Q Consensus 628 ~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~- 682 (714)
.+++++.||+. ||+.|....+.+.++..++. ++.++-|..|. ...+++.|+|..+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 45899999986 68889998898888888773 57777776653 4456778898764
Q ss_pred -----------ceEEEE-eCCeEEEEEcCC-CHHHHHH
Q 005108 683 -----------PTFKIY-KNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 683 -----------Pt~~~~-~~G~~~~~~~g~-~~~~l~~ 707 (714)
|+.+++ ++|+++..+.|+ ..+.+.+
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 555566 899999999987 3444333
No 400
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.43 E-value=0.00021 Score=59.18 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=65.3
Q ss_pred eehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc----CcchhhhCCcc-ccceE
Q 005108 614 EVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE----SPGVAHAENVR-IVPTF 685 (714)
Q Consensus 614 ~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~----~~~l~~~~~v~-~~Pt~ 685 (714)
.+.+.++++.++.. .+++++.=..+.|+-..+....+++.....++ +.++.+|+-+ +..+|..|||. .-|.+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45667788877765 66777777788999999999999999888876 9999999887 55679999999 57899
Q ss_pred EEEeCCeEEEEEcCC--CHHHH
Q 005108 686 KIYKNGSRMKEIVCP--SRDML 705 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~--~~~~l 705 (714)
++++||+.+..-.-. +.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999999765433 55554
No 401
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.014 Score=53.85 Aligned_cols=94 Identities=6% Similarity=-0.031 Sum_probs=76.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-TKALLRRAASNSK 560 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 560 (714)
.++..+...+++++|+..++.++....+. ..+-..+|.+...+|++++|+..++.... +.. .......|.++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH
Confidence 55888999999999999999998764433 45677899999999999999998876432 222 2345678999999
Q ss_pred hccHHHHHHHHHHHHHhCCC
Q 005108 561 LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~ 580 (714)
.|+.++|+..|+++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999999999843
No 402
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.41 E-value=0.00018 Score=58.40 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=46.2
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----chhhhCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----GVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
|+.|+++||+.|+.+.+.++++... +.+.++.||.+... .+.+.+++..+|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4679999999999999999998732 23678888876543 26677899999997 4578654
No 403
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.067 Score=51.63 Aligned_cols=166 Identities=10% Similarity=-0.051 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcH
Q 005108 372 REGDAAIAAGADFSPQLSMCRVEALLKLHQLE-DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450 (714)
Q Consensus 372 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 450 (714)
++++++++.+|.+ .++|..+-.+....|++. .-+++.+.++..+..+ ..+|..+-.+....+.+
T Consensus 99 ~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN--------------YHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 99 EYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN--------------YHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc--------------hhhhHHHHHHHHHHhhH
Confidence 4444555555542 333333444455555555 6677777788777777 67788888888888889
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-hC-
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK-LG- 528 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g- 528 (714)
+.-+.+..+.++.+-.+..+|....-+- ....-....-..+.-+.+..+.|.+.|+|..+|..|.-++.. .|
T Consensus 164 ~~EL~y~~~Lle~Di~NNSAWN~Ryfvi------~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNSAWNQRYFVI------TNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHHHHHHHHHHHhhhccchhheeeEEE------EeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 9999999999988877777775320000 000000001123455667778888999999999998888876 33
Q ss_pred -CHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 005108 529 -QWERSVEDSNQAL-LIQPNYTKALLRRAASN 558 (714)
Q Consensus 529 -~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 558 (714)
.+.+-...+...+ +..-..+..+-.+...|
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 2334444444443 33334455555555555
No 404
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.37 E-value=0.00011 Score=68.80 Aligned_cols=91 Identities=20% Similarity=0.331 Sum_probs=76.5
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+++... ..+-.++.|.++||+.|+...|.+..+..--- ++.+.+||+..++-|.-+|-|..+||+.-.|+|. +.
T Consensus 31 eenw~~~--l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-Fr 107 (248)
T KOG0913|consen 31 EENWKEL--LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FR 107 (248)
T ss_pred ccchhhh--hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc-cc
Confidence 3455555 34678899999999999999999988775332 4889999999999999999999999999999998 77
Q ss_pred EEcCC-CHHHHHHHHhh
Q 005108 696 EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~ 711 (714)
++.|. +...+..++++
T Consensus 108 rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 108 RYSGARDKNDFISFEEH 124 (248)
T ss_pred cccCcccchhHHHHHHh
Confidence 88899 88888887764
No 405
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.37 E-value=0.015 Score=56.94 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=64.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc--Cc---------chhhhCCccccceEEEE-eCC-eEEEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE--SP---------GVAHAENVRIVPTFKIY-KNG-SRMKE 696 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~--~~---------~l~~~~~v~~~Pt~~~~-~~G-~~~~~ 696 (714)
..++.|+...|+.|.++.|+|+.+..+|. +.++-|.+|. .+ ..++.++|..+|+++++ +++ +...-
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 67899999999999999999999999984 6677777765 22 25678999999998777 554 44444
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
-.|+ +.++|.+.|..+
T Consensus 224 ~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 224 SYGFITQDDLAKRFLNV 240 (248)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 5588 999998877654
No 406
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.34 E-value=0.00052 Score=62.65 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEeccc---------------------CcchhhhCCcc-----
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVDIDE---------------------SPGVAHAENVR----- 680 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~---------------------~~~l~~~~~v~----- 680 (714)
.++++.||+.||+.|+...|.|.++..++ .++.++-|..+. ...++++|++.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 35556667999999999999999999888 358888777654 34457788884
Q ss_pred ------------------------ccceEEEE-eCCeEEEEEcC
Q 005108 681 ------------------------IVPTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 681 ------------------------~~Pt~~~~-~~G~~~~~~~g 699 (714)
.+|..+|+ ++|.++...+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 78887777 78988887765
No 407
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.34 E-value=0.18 Score=51.25 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Q 005108 252 LYRKGCFGEALSMYDKAISLA----PRN----AAFRSNRAAALTGLG-RIGEAVKECEEAVRL 305 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 305 (714)
...+|+++.|..+|.|+-... |+. ...+++.|......+ ++++|...++++.++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356788899999988886654 222 456677777777788 888888888888765
No 408
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0011 Score=55.44 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=72.9
Q ss_pred hhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 616 SSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 616 ~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.+.....+++. ..+++|+-|.-.|.+.|-++...|.+++++..+ ..++.||+++-++..+-|++...|++.+|-|++
T Consensus 9 ~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 9 HSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred ccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 34444555553 346899999999999999999999999999988 557789999999999999999999988776665
Q ss_pred EEE---------EEcCC--CHHHHHHHHh
Q 005108 693 RMK---------EIVCP--SRDMLEHSVR 710 (714)
Q Consensus 693 ~~~---------~~~g~--~~~~l~~~~~ 710 (714)
-+. ++.++ +++++.+.|+
T Consensus 89 HmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 89 HMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred eEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 443 33344 5566665554
No 409
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.015 Score=56.01 Aligned_cols=174 Identities=17% Similarity=0.046 Sum_probs=126.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
+.+...-..|++....+|.++|.+-..+.+..-.+-....+..+-++++.++++.+|.+ ..+|..+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN--------------YQvWHHR 118 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN--------------YQVWHHR 118 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc--------------hhHHHHH
Confidence 34455667788888889999988766665544444444556788888899999888988 7788888
Q ss_pred HHHHHHhCcHH-HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHH
Q 005108 441 AQIEMALGRFE-NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519 (714)
Q Consensus 441 a~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 519 (714)
-.+....|++. .-++..++++..+..+..+|... -.+...-+.|+.-+.+..+.|+.+-.|-.+|+.
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR------------qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR------------QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHH------------HHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 88888888877 77888888888888888887754 556666677888888888888877666556555
Q ss_pred HHHHHHH-h-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 520 RAACWFK-L-----GQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 520 la~~~~~-~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
+-.+... . -..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 187 Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 187 RYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 4222222 1 124455667778888889988888888777765
No 410
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.31 E-value=0.001 Score=63.18 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=62.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
++++++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ...+++.|+|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 457899999 9999999999999988888773 56666665542 2345778998
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
. ..|+.+|+ ++|+++...+.. +.++|.+.|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 6 46876666 899999876432 66677666654
No 411
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.30 E-value=0.00073 Score=61.74 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=55.9
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------C--cchhhhCCcc--
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------S--PGVAHAENVR-- 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~--~~l~~~~~v~-- 680 (714)
+++++.|| +.||+.|....|.+.++..++. ++.++.|..+. . ..++..|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 57777777 8999999999999999988884 57777776553 3 5577888887
Q ss_pred --ccc--eEEEE-eCCeEEEEEcCC
Q 005108 681 --IVP--TFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 --~~P--t~~~~-~~G~~~~~~~g~ 700 (714)
++| +++++ ++|+.+....|.
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecC
Confidence 333 65666 899999998886
No 412
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.35 Score=51.79 Aligned_cols=307 Identities=13% Similarity=-0.006 Sum_probs=164.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-------LTGLGR--IGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-------~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-...-..|+-++.+..+-++-..-+.....-..+..+ +...+. .+...+.+....+..|+++-..+..+.
T Consensus 196 ~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar 275 (546)
T KOG3783|consen 196 LLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEAR 275 (546)
T ss_pred HHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHH
Confidence 33444556777777777766655443222221111222 222222 245555666666778998888889999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-VEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-a~~~~ 397 (714)
.+...|+.+.|+..++..+. ..+..+ ..-.++.+++.+....+|..|...+........- +..+|..+ |.||+
T Consensus 276 ~l~~~g~~eaa~~~~~~~v~----~~~kQ~-~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-S~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 276 ILSIKGNSEAAIDMESLSIP----IRMKQV-KSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-SHAFYTYFAGCCLL 349 (546)
T ss_pred HHHHcccHHHHHHHHHhccc----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-hHHHHHHHHHHHHh
Confidence 99999998888888887775 222222 2234667888888899999999999888776543 33333333 34543
Q ss_pred HcC--------CHHHHHHHhhcc---ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 398 KLH--------QLEDAESSLSNI---PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 398 ~~g--------~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+ +-++|..+++.. +...|.+.+.. .. . ..+|.++-.+. ..++.
T Consensus 350 ~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E----------~f-~------------~RKverf~~~~-~~~~~ 405 (546)
T KOG3783|consen 350 QNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE----------KF-I------------VRKVERFVKRG-PLNAS 405 (546)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh----------HH-H------------HHHHHHHhccc-ccccc
Confidence 322 222222222211 11111211100 00 0 01111111111 01111
Q ss_pred C------HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 467 N------VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-DPSN-SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 467 ~------~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
. .+..+.++ |.--....+.+++...++. -+. ++++ .--++.+|.++..+|+-..|..+|+
T Consensus 406 ~~la~P~~El~Y~Wn-----------gf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 406 ILLASPYYELAYFWN-----------GFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred ccccchHHHHHHHHh-----------hcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 11111111 1111111122222222211 112 3333 2345567999999999999999998
Q ss_pred HHHHh---CCC----CHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 539 QALLI---QPN----YTKALLRRAASNSKLEK-WADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 539 ~al~~---~p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
..++. ... .+.++|.+|..|..++. ..++..++.+|.+...++.---....+++..+.
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~ 539 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQAALH 539 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 88742 111 25789999999999998 999999999999887555433333344444443
No 413
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.062 Score=57.24 Aligned_cols=246 Identities=14% Similarity=0.047 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005108 259 GEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLC 334 (714)
Q Consensus 259 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~ 334 (714)
+...+.+....+..|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555556677899999999999999999998888888888877 322 3456778888888999999988887
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhHH--------HHHcCCHHHHHHHHHHH---HHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 335 LSGQQADPTEVHRLQVVEKHLSKCTD--------ARKVGDWKSALREGDAA---IAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 335 ~al~~~~~~~~~~l~~~~~~~~~a~~--------~~~~g~~~~Al~~~~~a---l~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
...+..+-.... ..++. +.+ ....++-+.|-.+++.. +...|.+.+. +..-..
T Consensus 328 ~L~desdWS~a~-----Y~Yfa-~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~R 391 (546)
T KOG3783|consen 328 LLRDESDWSHAF-----YTYFA-GCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVR 391 (546)
T ss_pred HHHhhhhhhHHH-----HHHHH-HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHH
Confidence 765432222111 11111 111 11122333333333322 2221211110 001112
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--CcHHHHH---HHHHHHhcc-CCCCHHHHHHHHhH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--GRFENAV---TAAEKAGQI-DPRNVEVAVLLNNV 477 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~---~~~~~al~~-~p~~~~~~~~l~~l 477 (714)
++.++-.+.. .++... ... -++.++.++... ...++.. ..++ .-+. ++++....+.+
T Consensus 392 Kverf~~~~~-~~~~~~-------la~-----P~~El~Y~Wngf~~~s~~~l~k~~~~~~-~~~~~d~Dd~~lk~lL--- 454 (546)
T KOG3783|consen 392 KVERFVKRGP-LNASIL-------LAS-----PYYELAYFWNGFSRMSKNELEKMRAELE-NPKIDDSDDEGLKYLL--- 454 (546)
T ss_pred HHHHHhcccc-cccccc-------ccc-----hHHHHHHHHhhcccCChhhHHHHHHHHh-ccCCCCchHHHHHHHH---
Confidence 3333222221 222210 000 112222222211 1122222 2221 1223 44444444433
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCC
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRF---DPS----NSVLYCNRAACWFKLGQ-WERSVEDSNQALLIQPNY 547 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 547 (714)
+|.++...|+-..|..+|...++. ... -|.+++.+|..|..++. ..+|.+++.+|-+...++
T Consensus 455 --------~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 455 --------KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 599999999999999999888742 112 27899999999999999 999999999998876554
No 414
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.24 E-value=0.34 Score=50.46 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=51.0
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAV 303 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (714)
+...+-+|+|.-.|+.+...|-.++.+++-.+.|++...-.|-.+.+|...-..-....+|......|-+++
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 334456889999999999999999999999999999988777666666544443334444544444444443
No 415
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.24 E-value=0.00044 Score=59.22 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=53.6
Q ss_pred CCceEEEeec-------CCCccccccchHHHHHHhhCC-CcEEEEEecccCc-------chhh--hCCccccceEEEEeC
Q 005108 628 PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDESP-------GVAH--AENVRIVPTFKIYKN 690 (714)
Q Consensus 628 ~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~-------~l~~--~~~v~~~Pt~~~~~~ 690 (714)
.+..++.|.+ .||+.|....|.+++.....| +..|+.|.|...+ ..-. .++|.+|||++-+..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTS
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECC
Confidence 4567777774 499999999999999887765 5888888775411 1122 589999999999988
Q ss_pred CeEEEEEcCCCHHHHHHHHh
Q 005108 691 GSRMKEIVCPSRDMLEHSVR 710 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~ 710 (714)
|+++....+.+.+.|+.+++
T Consensus 99 ~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 99 GERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp S-EEEHHHHH-HHHHHHHHH
T ss_pred CCccchhhhccHHHHHHHhc
Confidence 86655554557777766654
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.23 E-value=0.0053 Score=65.07 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
....|+...|++++..|+...|....+-.. ++++++.+.|...+|-.++.+++.+.-..+..++.+|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v-----------~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLV-----------NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNA 685 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHH-----------HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchh
Confidence 344799999999999999888866544321 348899999999999999999999998889999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
|..+.+.+.|++.|++|++++|+++.....|-.+.+
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999987776665554
No 417
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.21 E-value=0.00044 Score=62.51 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=52.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccch------HHHHHHhhCCCcEEEEEecccCcchhhhC--------Cccccce
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISP------YVETLCGRYPSINFLKVDIDESPGVAHAE--------NVRIVPT 684 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p------~l~~l~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~Pt 684 (714)
+.+..+...++++++++...||.-|+.|.. .+.++..+ ++.-++||.|+.|++...| +.-++|+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 456666667889999999999999998763 23332222 4667899999999998877 8889998
Q ss_pred EEEE-eCCeEEEEEcCC
Q 005108 685 FKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~ 700 (714)
.+|. .+|+++...+.+
T Consensus 106 ~vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 106 TVFLTPDGKPFFGGTYF 122 (163)
T ss_dssp EEEE-TTS-EEEEESS-
T ss_pred eEEECCCCCeeeeeeec
Confidence 7777 999999876655
No 418
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.16 E-value=0.0019 Score=62.15 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=62.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ...++++|+|.
T Consensus 30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 44457899999999999999998887774 46666665542 33457789985
Q ss_pred ------ccceEEEE-eCCeEEEEE-----cCCCHHHHHHHHhhh
Q 005108 681 ------IVPTFKIY-KNGSRMKEI-----VCPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ------~~Pt~~~~-~~G~~~~~~-----~g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++... +|.+.+++...|+.+
T Consensus 110 ~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 110 DENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 58988777 899888765 244888888888764
No 419
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.15 E-value=0.15 Score=49.42 Aligned_cols=231 Identities=12% Similarity=0.075 Sum_probs=127.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 329 (714)
...+.++|+.-|++++++.+... .++-.+..+++++++|++-.+.|.+.+..- .-| .-.+--++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI--------kSA---VTrNySEKs 107 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI--------KSA---VTRNYSEKS 107 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------HHH---HhccccHHH
Confidence 34578889999999998887653 355566777888888888888887765321 100 011111122
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHH
Q 005108 330 RRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS----MCRVEALLKLHQLEDA 405 (714)
Q Consensus 330 ~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~----~~la~~~~~~g~~~~A 405 (714)
+...-..+. . ......+ +.-|+..+..++.+- +..+| ..++.+|+..++|.+-
T Consensus 108 IN~IlDyiS---t--S~~m~LL------------Q~FYeTTL~ALkdAK------NeRLWFKTNtKLgkl~fd~~e~~kl 164 (440)
T KOG1464|consen 108 INSILDYIS---T--SKNMDLL------------QEFYETTLDALKDAK------NERLWFKTNTKLGKLYFDRGEYTKL 164 (440)
T ss_pred HHHHHHHHh---h--hhhhHHH------------HHHHHHHHHHHHhhh------cceeeeeccchHhhhheeHHHHHHH
Confidence 211110000 0 0000000 011122222222221 11122 2488999999999888
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARA 483 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~ 483 (714)
.+.++++.+...........+-...+ ..+|..-.++|-.+.+-.+-..+|++++.+...-+. ..-.+..
T Consensus 165 ~KIlkqLh~SCq~edGedD~kKGtQL--LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE------- 235 (440)
T KOG1464|consen 165 QKILKQLHQSCQTEDGEDDQKKGTQL--LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE------- 235 (440)
T ss_pred HHHHHHHHHHhccccCchhhhccchh--hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH-------
Confidence 88777765443332222222222233 334555677888888888888899999876544332 2222211
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC-------HHHHHHHHHHHHHhC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN-------SVLYCNRAACWFKLG 528 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g 528 (714)
.-|..+.+.|+|++|-..|-+|.+..... ..-|.-+|..+++.|
T Consensus 236 -CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 236 -CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred -cCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 23677889999999999988888764222 233455666666654
No 420
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.14 E-value=0.0017 Score=59.09 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=75.3
Q ss_pred ceeeehhhhHHhhhcc-CCC-ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVS-LPG-VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~-~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..|...+-.+++.. ..+ -|||+++...-+.|.-+.-.|+.|..+||.++|+++--..+ ..-|.=..+||++||
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVY 168 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEe
Confidence 6666776665555442 234 46789999999999999999999999999999999765442 223566789999999
Q ss_pred eCCeEEEEEcCC--------CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP--------SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~--------~~~~l~~~~~~~ 712 (714)
..|.....++|+ +.+.++.++-+-
T Consensus 169 ~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 169 HHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999988877765 567777776554
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.10 E-value=0.0033 Score=45.30 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+.++.+|..+.++|+|++|..+.+.+++++|+|..+......+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888888877766666555543
No 422
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.024 Score=52.40 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
-..+|..+...+++++|+..++.++.......+..+ ..++++.+....+.+++|+..++.... +.+.......+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l----~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elr 165 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL----AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence 344555555555566665555555543332222211 223445555555666666555543322 12223334457
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCC
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
|.++...|+-++|...|+++++.++..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 888888888888888888888776544
No 423
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.18 Score=55.07 Aligned_cols=85 Identities=12% Similarity=0.016 Sum_probs=43.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------hc
Q 005108 250 NELYRKGCFGEALSMYDKAISL--APRNAAFRSNRAAALTGLGRIGEAVKECEEAV----------------------RL 305 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------------~~ 305 (714)
..+.+.|+|-...++++.--.- |.....++.++|..+..+..+++|.++|.+.- ..
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh
Confidence 3445556666555555432110 01113456666666666666666666655431 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005108 306 DPNYWRAHQRLGSLLVRLGQVENARRHLC 334 (714)
Q Consensus 306 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 334 (714)
-|++...+-.+|..+...|.-++|.+.|-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 24555555556666666666666665553
No 424
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.06 E-value=0.0016 Score=56.20 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=66.7
Q ss_pred hhhccCCCceEEEeecC----CCccccccc--hHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE--eCC
Q 005108 622 RAAVSLPGVSVVHFKSA----SNLHCKQIS--PYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY--KNG 691 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~----~c~~C~~~~--p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G 691 (714)
+.+..+.+..+|+++++ ||..|+.+. |.+.++.. .++-++..|++. ..+++..++++++|++.++ +++
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 33445677899999998 888887654 44444443 256777888875 4468999999999998777 343
Q ss_pred --eEEEEEcCC-CHHHHHHHHhhh
Q 005108 692 --SRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 --~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+.++.|. ++++|...|..+
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHH
Confidence 458899999 999999888764
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.01 E-value=0.19 Score=51.62 Aligned_cols=184 Identities=12% Similarity=-0.056 Sum_probs=130.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL----HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 362 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
...+++..++..+.++-... .......++.+|..- .+..+|..+|+.+.+.. . ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~--------------~~a~ 112 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--L--------------AEAL 112 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--c--------------HHHH
Confidence 35567788888887776632 224455567766653 35788999999554432 2 4467
Q ss_pred HHHHHHHHH----hCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhC-----c--CHHHHHHHHHH
Q 005108 438 FVRAQIEMA----LGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKS-----E--RFTEACQAYGE 505 (714)
Q Consensus 438 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~-----g--~~~~A~~~~~~ 505 (714)
+.+|.+|.. ..+..+|..+|+++.+..-... .....+ +..|..- - +...|+..|.+
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l------------~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL------------GLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH------------HHHHHcChhhhcccHHHHhHHHHHHH
Confidence 778888887 5589999999999998755443 222222 4444432 1 33479999999
Q ss_pred hhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------------cHHH
Q 005108 506 GLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE---------------KWAD 566 (714)
Q Consensus 506 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~e 566 (714)
+.... +..+.+.+|.+|.. ..++++|+.+|+++-+... ..+++.++ ++...| +...
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~ 255 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ 255 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence 88775 78899999988866 4489999999999998876 78888888 666555 7788
Q ss_pred HHHHHHHHHHhCCCC
Q 005108 567 AVRDFEVLRRELPDD 581 (714)
Q Consensus 567 A~~~~~~al~~~p~~ 581 (714)
|...+.++....+..
T Consensus 256 a~~~~~~~~~~~~~~ 270 (292)
T COG0790 256 ALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHcCChh
Confidence 888888877765443
No 426
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.01 E-value=0.0014 Score=53.25 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cchhhhCC--ccccceEEEEeCCeEEEEEcCCCHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PGVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDML 705 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~l 705 (714)
|+.|..+||+.|.+....|+++..+++++.+..+|++.. .++....+ ++.+|+++ .+|+.+ .|. ++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---gG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---GGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---cCH--HHH
Confidence 567888999999999999999988777888888888753 24555566 48999985 477643 233 445
Q ss_pred HHHHhh
Q 005108 706 EHSVRH 711 (714)
Q Consensus 706 ~~~~~~ 711 (714)
.+++++
T Consensus 75 ~~~~~~ 80 (86)
T TIGR02183 75 EQLVKE 80 (86)
T ss_pred HHHHHh
Confidence 555544
No 427
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.00 E-value=0.078 Score=53.93 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHCCCHH---HHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKG-CFGEALSMYDKAISL----APRN----------AAFRSNRAAALTGLGRIG---EAVKECEEAV 303 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~----~p~~----------~~~~~~la~~~~~~g~~~---~A~~~~~~al 303 (714)
+..+++.|..++..+ ++++|+..++++.+. .... ..++..++.+|...+.++ +|....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 577899999999999 999999999999987 2211 456778899999888764 4555666666
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 340 (714)
...|+.+..+...-.++.+.++.+++.+.+.+++...
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 6678777777666677777888899988888887643
No 428
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.00 E-value=0.0013 Score=42.80 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
+|+.+|.+|.++|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 429
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.0028 Score=66.33 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=90.9
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL---GQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
.+..|+-.+....+..|+..|.+++...|....+|.+++.++++. |+.-.|+..+..+++++|....+++.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 344466667777889999999999999999999999999999885 46678889999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.++++.+|+++...+....|.+......
T Consensus 457 el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 457 ELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred HHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 9999999999999988888866554433
No 430
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.97 E-value=0.0026 Score=71.58 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=65.9
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
.+-.|..++|+.|......++++....|++..-.+|+.+.++++++|+|+++|+++| ||+.+ +.|. +.+++..+|
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 455668999999999999999999999999999999999999999999999999876 77755 3476 999888876
No 431
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.96 E-value=0.0028 Score=57.14 Aligned_cols=75 Identities=20% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------CcchhhhCCccc
Q 005108 627 LPGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------SPGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------~~~l~~~~~v~~ 681 (714)
..+++++.|| +.||+.|....|.+.++..++ .++.|+.|.++. ...++..|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 3568899999 689999999999999998886 457777776553 334577888887
Q ss_pred cc---------eEEEE-eCCeEEEEEcCCC
Q 005108 682 VP---------TFKIY-KNGSRMKEIVCPS 701 (714)
Q Consensus 682 ~P---------t~~~~-~~G~~~~~~~g~~ 701 (714)
.| +++++ ++|+++....|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 76 56666 7899999998883
No 432
>PRK15000 peroxidase; Provisional
Probab=96.94 E-value=0.0046 Score=59.29 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.||+ .||+.|....+.|.++..++. ++.++-|.+|. ..++++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 4588999999 599999999999999988874 46776666552 2245678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|..+|+ ++|+++...++. +.+++.+.|+.+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8988 68987777 799999877763 677777777543
No 433
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.92 E-value=0.0017 Score=63.67 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=59.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE------------------------------------------EEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF------------------------------------------LKV 665 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~------------------------------------------~~v 665 (714)
....++.|..+.|+.|+++++.+.++...--.+.+ ...
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~ 186 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDV 186 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccc
Confidence 45678889999999999999888887542101111 122
Q ss_pred ecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 666 d~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++.++++++||+++|+++ +.||+.+ .|. +.++|+++|+..
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 233466678999999999998 7899866 688 999999998864
No 434
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0029 Score=52.70 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=55.0
Q ss_pred CCCceEEEeec--------CCCccccccchHHHHHHhhCC-CcEEEEEecccCc-------chhhhCCc-cccceEEEEe
Q 005108 627 LPGVSVVHFKS--------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDESP-------GVAHAENV-RIVPTFKIYK 689 (714)
Q Consensus 627 ~~~~~vv~f~a--------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~-------~l~~~~~v-~~~Pt~~~~~ 689 (714)
+...+++.|.+ +|||.|....|.+.+.....| ++.|+.|++-+-+ ..-...++ ..|||++=++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 34456777775 499999999999988877665 5999999987622 22334455 8999999997
Q ss_pred -CCeEEEEEcCCCHHHHH
Q 005108 690 -NGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 690 -~G~~~~~~~g~~~~~l~ 706 (714)
.+++.....+.....++
T Consensus 104 ~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 104 RQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CccccchHhHhhHHHHHH
Confidence 45555444444333333
No 435
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.91 E-value=0.0017 Score=42.20 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
++|+.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999985
No 436
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.90 E-value=0.002 Score=58.18 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEecc
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d 668 (714)
.+++++.||+.||+. |....+.+.++..++. ++.++.|..|
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 468999999999998 9999999999998884 2888888764
No 437
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.90 E-value=0.0044 Score=60.05 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=63.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ..+++..||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 45689999999999999999999988873 57776666553 23467788884
Q ss_pred -------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++..+. |.+.+++.+.|+.+
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 67988777 8999987764 33678888777654
No 438
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.90 E-value=0.0033 Score=50.38 Aligned_cols=70 Identities=16% Similarity=0.290 Sum_probs=53.5
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchh---hhCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVA---HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~---~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
+..|..+||+.|.+....|++ .++.|-.+|+++.++.+ ...+...+|++++ +| ..+.|++.+.|.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 567888999999999888855 36788889998877633 3458889999865 44 34669999999887
Q ss_pred Hhh
Q 005108 709 VRH 711 (714)
Q Consensus 709 ~~~ 711 (714)
+..
T Consensus 73 ~~~ 75 (81)
T PRK10329 73 HPA 75 (81)
T ss_pred HHh
Confidence 654
No 439
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.88 E-value=0.0022 Score=58.89 Aligned_cols=102 Identities=24% Similarity=0.389 Sum_probs=79.6
Q ss_pred ceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+.++.+..+|...|... -..+|+.|.+--.-|..+.-.+.-|+++||-++|+++--.. -....+|....+||+.|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEEE
Confidence 566777888888877543 25678999999999999999999999999999999987643 33567899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|++|+.+.-++.. -.-.|+.+|+.|+
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999987655432 2245666666654
No 440
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.87 E-value=0.006 Score=57.60 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
+.+++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ...++++|+|.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 47888888 9999999999999999888873 46666665543 34568899983
Q ss_pred ----cc--ceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 ----IV--PTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ----~~--Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
++ |+.+|+ ++|+++...+ |.+.+++.+.|+.+
T Consensus 112 ~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 112 REDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 56 877666 8999887654 33777777777543
No 441
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.86 E-value=0.069 Score=55.48 Aligned_cols=124 Identities=13% Similarity=0.011 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR---LGQVENARRHLC 334 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~ 334 (714)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.+++++..+|++...|..+-..... .-.+.+....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999998888766555443 234667777777
Q ss_pred hhcCCC-----------ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 335 LSGQQA-----------DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 335 ~al~~~-----------~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
+++... ..........+..++..+....+.|..+.|+..++..++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 765410 11112234455556666666777777777777777777664
No 442
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.84 E-value=0.0016 Score=50.92 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=49.7
Q ss_pred EEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC---CccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 633 VHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE---NVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 633 v~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
..|..++|+.|++....|++. ++.|-.+|+++.++....+ |...+|++++ +|. ..+.|++++.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 457789999999999988752 5778888888877655544 8889999755 454 2567888888865
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.84 E-value=0.013 Score=57.35 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.+.-..+.|+.++|..+|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3556788999999999999999999999999999999999999999999999999999999999998877543
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.79 E-value=0.045 Score=45.95 Aligned_cols=92 Identities=14% Similarity=0.320 Sum_probs=70.2
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccC---CC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCC
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFD---PS---------NSVLYCNRAACWFKLGQWERSVEDSNQALL-------IQPN 546 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~ 546 (714)
.|.-.+..|.|++|...|.++++.. |. +...+-.|+.++..+|+|++++...+++|. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3666677899999999999998853 21 246677789999999999999988888875 4555
Q ss_pred CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 547 YT----KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 547 ~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.. .+.+..+..+..+|+.++|+..|+.+-+.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 45578899999999999999999988654
No 445
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.79 E-value=0.11 Score=54.63 Aligned_cols=104 Identities=16% Similarity=0.073 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
..+.+.....+.+.|-+..|+++.+-.+.++|. ++-....+ +-....+.++|+--++.++........
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~-----------ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF-----------IDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH-----------HHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 335566677777888888888888888888887 55433322 234456667777777777765542111
Q ss_pred -----CHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHhCCCCH
Q 005108 513 -----NSVLYCNRAACWFKLGQW---------------ERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 513 -----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 548 (714)
-+..-+.++.++..+++- ++|.+.+++|+...|.-.
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 235667778888888887 888888988888776533
No 446
>PRK10941 hypothetical protein; Provisional
Probab=96.76 E-value=0.015 Score=58.08 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
..+.++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4566778888999999999999999999999999888889999999999999999999999999998876554433
No 447
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.15 Score=51.14 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccc----CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPK----IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID- 464 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 464 (714)
..++.+|.+.++|.+|+.....++. ++... ....++..-...|+.+.+..+|...+..|....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~------------lLvev~llESK~y~~l~Nl~KakasLTsART~An 199 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKI------------LLVEVHLLESKAYHALRNLPKAKASLTSARTTAN 199 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc------------ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhc
Confidence 3478899999999999988766553 33332 234456666788888888888888877664321
Q ss_pred ----CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC---CCH---HHHHHHHHHHHHhCCHHHHH
Q 005108 465 ----PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP---SNS---VLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 465 ----p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~---~~~~~la~~~~~~g~~~~A~ 534 (714)
|-...+-.-+ .-|..+....+|.-|..+|-++++-.. ++. ..+-.+-.|-..++..++--
T Consensus 200 aiYcpPqlQa~lDL----------qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~ 269 (411)
T KOG1463|consen 200 AIYCPPQLQATLDL----------QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVA 269 (411)
T ss_pred ccccCHHHHHHHHH----------hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 2111121112 237777778999999999999988421 122 33344555666777777654
Q ss_pred HHH--HHHHHhCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 535 EDS--NQALLIQPNYTKALLRRAASNSK--LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 535 ~~~--~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..+ +.+++....+.++....+.++.+ +.+|+.|+..|+.-+..+ +-++..+...+..
T Consensus 270 ~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 270 ALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDN 330 (411)
T ss_pred HHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHH
Confidence 444 56677777788999999998854 578999999998877655 4555555554443
No 448
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.73 E-value=0.0052 Score=56.27 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKV 665 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~v 665 (714)
..+.++.|+..+|+.|+.+.|.+.++..+++++.++..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 34788999999999999999999998877776555443
No 449
>PRK13189 peroxiredoxin; Provisional
Probab=96.73 E-value=0.0068 Score=59.14 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=61.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ..+++++|||.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 55678899999999999999999888873 56676665553 23457788886
Q ss_pred -------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|.++...+ |.+.+++...|+.+
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 46776666 8999887664 44778888877654
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.72 E-value=0.026 Score=48.61 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 513 NSVLYCNRAACWFKLG---QWERSVEDSNQALL-IQPNY-TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.....+++|+++.... +..+.+.+++..++ -.|+. -+..+.|+..++++++|++++.+.+.+++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4577889999998755 46778899999986 44443 3677889999999999999999999999999999999887
Q ss_pred HHHHHHHhhh
Q 005108 588 LFHAQVSLKK 597 (714)
Q Consensus 588 L~~~~~~l~~ 597 (714)
-..++..+.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 7666666554
No 451
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.70 E-value=0.18 Score=52.42 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=151.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 264 MYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
.|++++...+-.++.|+.....+...++-+.|+...++++...|. ....++.+|....+-+.-..+|+++.+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q----- 361 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ----- 361 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-----
Confidence 466777777777888888888888888888888888888777665 556677777666666666566655431
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 344 EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 344 ~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
.+...+. .++-+.+-. . .|+++...+.+-+-.. ..
T Consensus 362 ------~L~r~ys-------~~~s~~~s~---------~----------------D~N~e~~~Ell~kr~~---k~---- 396 (660)
T COG5107 362 ------DLKRKYS-------MGESESASK---------V----------------DNNFEYSKELLLKRIN---KL---- 396 (660)
T ss_pred ------HHHHHHh-------hhhhhhhcc---------c----------------cCCccccHHHHHHHHh---hh----
Confidence 0000000 000000000 0 1112111111111000 11
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
..+|......-.+..-.+.|..+|-++-+..-...+++..- .-.-+...|++.-|...|
T Consensus 397 ----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~-----------A~~E~~~~~d~~ta~~if 455 (660)
T COG5107 397 ----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYC-----------AFIEYYATGDRATAYNIF 455 (660)
T ss_pred ----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeH-----------HHHHHHhcCCcchHHHHH
Confidence 33555555555566667777888877765442222222211 012356678888888888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY--TKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+-.+...|+++...+..-..+...++-+.|...|+++++.-.+. ...|-.+...-.+-|+...++..=++..++.|..
T Consensus 456 elGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 456 ELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 88888888888777777777888888888888888777632222 3556666666677889988888888888888875
Q ss_pred HHH
Q 005108 582 NEI 584 (714)
Q Consensus 582 ~~~ 584 (714)
..+
T Consensus 536 n~~ 538 (660)
T COG5107 536 NLI 538 (660)
T ss_pred hHH
Confidence 433
No 452
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.69 E-value=0.0067 Score=58.48 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=62.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ...++.+|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 55678999999999999999999988874 57777776653 23457789986
Q ss_pred ----ccc----eEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 681 ----IVP----TFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 681 ----~~P----t~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
+.| +++|+ ++|+++..+++ .+.+++...|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 334 34555 89999887765 3677888777654
No 453
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.68 E-value=0.0039 Score=40.00 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
+++.+|.++.++|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 454
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.62 E-value=0.48 Score=48.58 Aligned_cols=189 Identities=16% Similarity=0.049 Sum_probs=114.3
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC
Q 005108 286 LTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG 365 (714)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g 365 (714)
....+++..|...+.++-.. .+..+...++.+|..-.- ...
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g-------------------------------------v~~ 91 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG-------------------------------------VSR 91 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC-------------------------------------ccc
Confidence 34556777777777777652 223455555555544331 122
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA 441 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la 441 (714)
+..+|+.+|..+...+ .+...+.+|.+|.. ..++.+|..+|+++.+..-... ....+.++
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------~~~~~~l~ 155 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------ALAMYRLG 155 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------HHHHHHHH
Confidence 3445555555433332 23334446666665 4477777777777776654430 12345555
Q ss_pred HHHHHhC-------cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccC
Q 005108 442 QIEMALG-------RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFD 510 (714)
Q Consensus 442 ~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~ 510 (714)
..|..-. +...|+..|.++-... +......+ |.+|.. ..++++|..+|.++.+..
T Consensus 156 ~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~l------------g~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 156 LAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLL------------GRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHH------------HHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555431 2347888888887665 44444444 666644 458999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHHhCCC
Q 005108 511 PSNSVLYCNRAACWFKLG---------------QWERSVEDSNQALLIQPN 546 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 546 (714)
. ....+.++ ++...| +...|..++.++....+.
T Consensus 222 ~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 222 D--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred C--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 5 88888888 776666 667777777776665444
No 455
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.62 E-value=0.0034 Score=47.07 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=42.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh----hCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH----AENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~~~G~~~ 694 (714)
++.|+.++|+.|......|++ .++.|-.+|++..++..+ ..++..+|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 467889999999999888844 347788888888765433 349999999886 77653
No 456
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.58 E-value=0.051 Score=58.55 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
...+...++|.+|...-++.-++- +.+|+-.|.-+.+..++++|.+.|.+|=
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 455556666666665554433322 3455666666666667777766666553
No 457
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.34 Score=47.42 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=156.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAP--------RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+|+...+.+++++|+..|.+.+...- ........++.+|...|++..-.+..... .++|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence 5677888888999999999998886521 12456677888888888776543333221 12222111
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
. -+..+-++.+-.............+..+..... -|.+.-++.++ ..+-..++.+++
T Consensus 80 k-----~k~~KiirtLiekf~~~~dsl~dqi~v~~~~ie------------wA~rEkr~fLr------~~Le~Kli~l~y 136 (421)
T COG5159 80 K-----PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIE------------WADREKRKFLR------LELECKLIYLLY 136 (421)
T ss_pred c-----hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH------------HHHHHHHHHHH------HHHHHHHHHHHH
Confidence 1 111111121111111111111111111111110 01111111111 122334788899
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-----DPRNVEVAV 472 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 472 (714)
+.|+|.+|+.....++..-.. +.+.+....++..-..+|....+..++...+..|... -|....+..
T Consensus 137 ~~~~YsdalalIn~ll~ElKk--------~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 137 KTGKYSDALALINPLLHELKK--------YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred hcccHHHHHHHHHHHHHHHHh--------hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 999999999887765532111 1111223556677778888888888877777655432 222222222
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC---CCCHHHHHHH---HHHHHHhCCHHHHHHHH--HHHHH-h
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD---PSNSVLYCNR---AACWFKLGQWERSVEDS--NQALL-I 543 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l---a~~~~~~g~~~~A~~~~--~~al~-~ 543 (714)
-+ .-|...+...+|.-|..+|-++++-. ..+..+...+ -..-..++..++-...+ +..++ .
T Consensus 209 DL----------~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y 278 (421)
T COG5159 209 DL----------LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY 278 (421)
T ss_pred HH----------hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh
Confidence 22 12667778889999999999988743 2233332222 22223344444433333 23344 4
Q ss_pred CCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 544 QPNYTKALLRRAASN--SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 544 ~p~~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
+....++....+.+| ..+.+|.+|+..|+.-+..+ +-++..+...+..
T Consensus 279 ~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D---~~iRsHl~~LYD~ 328 (421)
T COG5159 279 DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD---SFIRSHLQYLYDV 328 (421)
T ss_pred hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC---HHHHHHHHHHHHH
Confidence 455667777778777 34568899999888766544 4555555554443
No 458
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.54 E-value=0.091 Score=54.61 Aligned_cols=147 Identities=13% Similarity=-0.005 Sum_probs=108.8
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR------------FENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
..|++.++.+|.+ ...|..+.......-. .+.-+.+|++|++.+|++...+..+
T Consensus 6 ~el~~~v~~~P~d--------------i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~ 71 (321)
T PF08424_consen 6 AELNRRVRENPHD--------------IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGY 71 (321)
T ss_pred HHHHHHHHhCccc--------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3466777788888 6677777665554422 5677889999999999998888766
Q ss_pred HhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhC----C--
Q 005108 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK---LGQWERSVEDSNQALLIQ----P-- 545 (714)
Q Consensus 475 ~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~----p-- 545 (714)
-....+..+-++..+.+++++..+|++..+|..+-..... .-.+.+....|.++++.- .
T Consensus 72 ------------l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 72 ------------LEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred ------------HHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 3344566677888899999999999999888776544333 235778888888877631 0
Q ss_pred ------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 546 ------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 546 ------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
....++.++.....+.|-.+.|+..++..++++=
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1125567777778899999999999999999874
No 459
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.53 E-value=0.0025 Score=61.20 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE---------------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF--------------------------------------------- 662 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~--------------------------------------------- 662 (714)
....++.|..+.|+.|+++++.+.+.. .++.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~---~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA---DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc---CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 457888999999999999999887611 12221
Q ss_pred EEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 663 LKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 663 ~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
...+++++.++++.+||+++|+++ ++||+. +.|. +.++|+++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 122333355678899999999997 889986 4688 888887654
No 460
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.52 E-value=0.005 Score=51.48 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=57.8
Q ss_pred HHhhhccCCCceEEEeecCCCcccc---ccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCK---QISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~---~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+...+...+..++.| +..+..+. .+.-++-+|...+++ +...-++.+...+|+..|+|..+|+++++++|+.+.
T Consensus 18 ~ld~~l~~~~~~vlf~-~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 18 TLDAFLAAPGDAVLFF-AGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLG 96 (107)
T ss_dssp CHHHHHHCCSCEEEEE-SS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEE
T ss_pred hHHHHHhCCCcEEEEE-CCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEE
Confidence 3444455555655544 44444444 444477888888887 556677777888999999999999999999999999
Q ss_pred EEcCC
Q 005108 696 EIVCP 700 (714)
Q Consensus 696 ~~~g~ 700 (714)
.+.|.
T Consensus 97 ~i~gi 101 (107)
T PF07449_consen 97 AIEGI 101 (107)
T ss_dssp EEESS
T ss_pred EecCe
Confidence 98876
No 461
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.52 E-value=1.4 Score=46.41 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=67.4
Q ss_pred CcCHHHHHHHHHHhhccCCCCHHHHHHHHH---HHHHhC----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAA---CWFKLG----Q---WERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~~~~g----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
.|+.++|+..+-..-.+.|+-..+....-. ++.+.. . --+-+.+.++.+-.+.++..++...+.-.+.+.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 578889998888777788876544433222 222111 0 113344555566667777777766666778889
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+|.+|++++++.-+.+.-...+...+..+...+.+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 99999999999988875444455555555555544
No 462
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.51 E-value=0.007 Score=56.82 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=32.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~ 667 (714)
.++++|.|||.||+.|.+ .|.|+++.++|. ++.++-+.+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeec
Confidence 468999999999999974 889999999985 477777765
No 463
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.48 E-value=0.01 Score=66.24 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.+..|..+.|+.|......++++....|++.+-.+|..+.++++..|+|.++|++++ ||+.+ +.|. +.+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999965 77644 4476 8888877
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.+..
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 7653
No 464
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.48 E-value=0.014 Score=42.05 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+.++.+|..++++|+|++|..+++.+++++|++.++......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999987775554443
No 465
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.47 E-value=0.013 Score=56.83 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=61.7
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.|.++..++. ++.++-|.+|. ..+++..|||.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 45568899999999999999999988883 57777776663 22456788874
Q ss_pred -------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
.+|+.+|+ ++|+++..+++ .+.+++...|+.+
T Consensus 116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 36776666 89999887643 3778887777654
No 466
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.45 E-value=1.9 Score=50.87 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGL----G---RIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
...-++++..+.|+.|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++... .|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 345567788899999999999999998865 56777777776654 2 57888888887543 4566777899
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~ 338 (714)
.|.+|.++|++++-++.|..+++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 467
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.45 E-value=0.0059 Score=39.12 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
++++.+|.++.+.|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999888863
No 468
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.11 Score=55.96 Aligned_cols=142 Identities=20% Similarity=0.023 Sum_probs=112.3
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 527 (714)
+...-++..+..-+.+++.+++...... +...+...+....+...+..++..+|++..++.+++......
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~----------lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~ 114 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAF----------LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD 114 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHH----------HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence 3444466667777778888888754331 355677788888899999999999999999999999998888
Q ss_pred CCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 528 GQWERSVEDSNQ-ALLIQPNYTKALLRR------AASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 528 g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
|....++..+.. +....|++......+ +..+..+|+..++....++++++.|.++++...+........++.
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 115 GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 887777766665 888899988776655 888888999999999999999999999988888877755555444
No 469
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.40 E-value=2.4 Score=47.87 Aligned_cols=147 Identities=8% Similarity=-0.099 Sum_probs=105.2
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCcH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG---LGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~ 310 (714)
...+++.+...+..+...+.+.|++++-...-.++.++.|..+..|.....-... .+...++...|++++.. -+.+
T Consensus 105 e~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v 183 (881)
T KOG0128|consen 105 ELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSV 183 (881)
T ss_pred HhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccc
Confidence 3447778888899999999999999998888888888999999888877554433 36778888899998863 3334
Q ss_pred HHHHHHHHHH-------HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 311 RAHQRLGSLL-------VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 311 ~a~~~la~~~-------~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
..|...+..+ ...++++.-...|.+++..............+.+......|...-..++-+.++...+...
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 4444444433 4456788888899998875444444555555666666666666666677777777777664
No 470
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=1.4 Score=48.07 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=82.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+.|.-.++..+|..++++|...++..|.| .....+++.||..+.+.++|.+++++|-+.+|.++-..+..-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 44778899999999999999999887765 567788999999999999999999999999999998888888888
Q ss_pred HHhccHHHHHHHHHHHHHhC
Q 005108 559 SKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~ 578 (714)
...+.-++|+....+.....
T Consensus 439 ~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhcchHHHHHHHHHHHhhh
Confidence 89999999999888776543
No 471
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.37 E-value=0.013 Score=50.15 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=64.9
Q ss_pred HHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccc-eEEEEeCCeEEE
Q 005108 620 QFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVP-TFKIYKNGSRMK 695 (714)
Q Consensus 620 ~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~P-t~~~~~~G~~~~ 695 (714)
..+++| +...++++.|...|.+.|-++...|.+++++..+ ..++.||+++.++.-+.|.+. .| |+.+|-+++.+.
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~ 88 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMM 88 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEE
Confidence 344444 3467899999999999999999999999999988 557789999999999999998 88 455554555443
Q ss_pred ---------EEcCC--CHHHHHHHHh
Q 005108 696 ---------EIVCP--SRDMLEHSVR 710 (714)
Q Consensus 696 ---------~~~g~--~~~~l~~~~~ 710 (714)
++.+. +++++.+.|+
T Consensus 89 vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 89 VDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEecCCCccEEEEEcCcHHHHHHHHH
Confidence 23333 5566666554
No 472
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.35 E-value=0.0047 Score=49.71 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----chhhhCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----GVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++.|..+||+.|..+...++++.. .+.++.+|.++.. .+.+..++..+|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 567889999999999999998876 3567777776542 34556688899986 6678753
No 473
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.32 E-value=0.0058 Score=48.81 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=43.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---cchhhhCCccccceEEEEeCCeEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---PGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
..|+.|..+||+.|.+....|++. ++.|-.+|+++. .++....+...+|.+++ ||+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 446788999999999999988753 466667777664 34445568899999854 78754
No 474
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.30 E-value=0.023 Score=56.43 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=61.1
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhC
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAE 677 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~ 677 (714)
+.+++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ..+++++|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 35555555 8999999999999988888773 46666555543 23468899
Q ss_pred Ccc-----ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 678 NVR-----IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~-----~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
||. .+|+.+|+ ++|+++...+ |.+.+++.+.|+.+
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 986 58887777 7999988663 33888888777643
No 475
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.28 E-value=0.045 Score=44.73 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 261 ALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--WRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 261 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.++..+|.-+.-...|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 4667888999999999999999999999999999999999999998776 667777777777777644333333
No 476
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.28 E-value=0.0078 Score=39.66 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
|.++|.+|.++|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555553
No 477
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.28 E-value=0.092 Score=55.25 Aligned_cols=177 Identities=14% Similarity=-0.028 Sum_probs=107.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHH
Q 005108 269 ISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348 (714)
Q Consensus 269 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 348 (714)
+..+|....++..++.++..+|+++.|.+.+++|+-.-.......+..-..-...|. ...+......-
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~------------~rL~~~~~eNR 100 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN------------CRLDYRRPENR 100 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc------------cccCCccccch
Confidence 455777778888888888888888888887777753211100000000000000000 01111111122
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhh
Q 005108 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427 (714)
Q Consensus 349 ~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 427 (714)
......+.....+.+.|-+..|+++.+-.+.++|. +...+...+-....+.++++--++.++........+ +
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-------~ 173 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-------W 173 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-------h
Confidence 23344555566688999999999999999999998 444555555566677888888888887655421111 0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCcH---------------HHHHHHHHHHhccCCC
Q 005108 428 FGMLSEAYTFFVRAQIEMALGRF---------------ENAVTAAEKAGQIDPR 466 (714)
Q Consensus 428 ~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 466 (714)
.. ..+...+..+.+++..++. ++|.+.+.+|+...|.
T Consensus 174 ~~--~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 174 LS--LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hh--hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 00 0123567788888888888 8999999999988774
No 478
>PRK10941 hypothetical protein; Provisional
Probab=96.27 E-value=0.033 Score=55.64 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=66.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.-...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 44677999999999999999999999999999999999999999999999999999999999987765554443
No 479
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=2.3 Score=53.61 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
-.+.|...|.+..+.|+++.|..++-+|.+.. -++++...|..+...|+-..|+..+++.++.+-.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 37899999999999999999999999998877 4688999999999999999999999999976533
No 480
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.24 E-value=0.22 Score=41.97 Aligned_cols=92 Identities=25% Similarity=0.357 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cC
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPR------------NAAFRSNRAAALTGLGRIGEAVKECEEAVR-------LD 306 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 306 (714)
...|...+..|-|++|...|.++.+.... +..++..|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34566678889999999999999986422 256788899999999999998888777764 44
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 307 PNY----WRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 307 p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+. ..+.+..+..+...|+.++|+..|+.+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 443 4456778889999999999999998764
No 481
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.19 E-value=0.34 Score=43.78 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
...+......-...++.+++...++.+-.+.|+.+..-..-|.+++..|+|.+|+..|+.+.+..|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 35677788888899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HcCCHH
Q 005108 322 RLGQVE 327 (714)
Q Consensus 322 ~~g~~~ 327 (714)
.+++..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 988864
No 482
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.18 E-value=0.0088 Score=39.40 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
+|.+||.+|.++|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 483
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.57 Score=42.53 Aligned_cols=141 Identities=11% Similarity=-0.027 Sum_probs=99.9
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----H
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----S 514 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~ 514 (714)
.-+.-+...++.++|+..|...-+..-....++..+ ..+.+..+.|+-..|+.+|.++-+..+-- -
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~m----------r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARM----------RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHH----------HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 344555667889999999988776655554444333 44888999999999999999987754321 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALL-IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
.+...-+.++...|-|++-....+..-. -+|--..+...||..-++.|++.+|...|++... +-+-++......+
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 3455567788889999988776665422 3444457778899999999999999999998877 4344444333333
No 484
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.14 E-value=0.28 Score=53.19 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLA-------------PRNAAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
..|..+|+..+..=+++-|.+.|.++-.+. .....--..+|..+.-.|++.+|.+.|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346667777777778888888877653110 00001123456666666666666666654
No 485
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0069 Score=60.82 Aligned_cols=115 Identities=27% Similarity=0.330 Sum_probs=96.2
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCC-------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDP-------------------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+...++.++|+.|..-|.+++..-. .-...+.+++.+-.+.+.+..|+.....+++.++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 36677888888888888877765311 11345677899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcc
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~ 600 (714)
...+++.++..+..+.++++|++.++.+....|++.++.+.+.......+...+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999988877766665443
No 486
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.08 E-value=3.7 Score=46.90 Aligned_cols=125 Identities=12% Similarity=-0.051 Sum_probs=74.5
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
.-....+.+.|...+.+......-..+....+ ...+|.-....+...+|..++..+..... +...+.....
T Consensus 250 ~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r 320 (644)
T PRK11619 250 ASVARQDAENARLMIPSLVRAQKLNEDQRQEL--------RDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVR 320 (644)
T ss_pred HHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHH
Confidence 34455667788888876544443332222111 01123333333235677777776554332 3333444444
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
.....++++.+...+..+-.........+|.+|.++..+|+.++|..+|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555788888887777775443445667888888888888999999888888744
No 487
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.06 E-value=0.022 Score=55.83 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+..-...+....+.|+.++|..+|+-|++++|.+++++...|.......+.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456777788999999999999999999999999999999999999999999999999999999999988777654
No 488
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.04 E-value=0.0086 Score=46.44 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=42.5
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcch----hhhCCccccceEEEEeCCeEEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV----AHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
++.|..+||+.|+.+...|.+.. +.|..+|++..+++ ....+...+|++ +.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56788999999999999988764 66778888876653 334477788876 45887655
No 489
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.072 Score=56.11 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK-WADAVRDFEVLRR 576 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~ 576 (714)
.-...|+.|+...+.|..+|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678889998899999999998888888889999999999999999999999988888777776 9999999999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 005108 577 ELPDDNEIAESLFHAQ 592 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~ 592 (714)
.+|+.+.++....+..
T Consensus 169 ~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRME 184 (568)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999999887666543
No 490
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.01 E-value=0.13 Score=49.78 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHH---HHhcCCC---c
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLA-----PRNAAFRSNRAAALTG-LGRIGEAVKECEE---AVRLDPN---Y 309 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-----p~~~~~~~~la~~~~~-~g~~~~A~~~~~~---al~~~p~---~ 309 (714)
-.++..+....+..++|++-++.|.+.+..- .+..+--.+-..-|.. ..+.+--.+.|+. |++-..+ +
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 3567778889999999999999999987531 1111111111111111 1222222222322 2222111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQ-----QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
...-..||.+|+..+.|.+-.+.+.+.-+ ....+.....+.++.+--....|-..++..+-...|++++......
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 33445689999998888877776665543 2222222334455555555666778888888888899988774322
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 385 S-----PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 385 ~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
. ..+.-+-|.++++.|+|++|...|-++++......+... ....-|..+|..+++.|
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR-------ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR-------TTCLKYLVLANMLMKSG 286 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch-------hHHHHHHHHHHHHHHcC
Confidence 1 223334567789999999999988888876554421111 12334666777777655
No 491
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.99 E-value=0.049 Score=44.50 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccH
Q 005108 499 ACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY--TKALLRRAASNSKLEKW 564 (714)
Q Consensus 499 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 564 (714)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3456777788888888888888888888888888888888888877665 34444444555444443
No 492
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.95 E-value=0.079 Score=44.36 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=71.4
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQ-----------WERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
+..++..|++-+|+++.++.+...+++. .++...|.++.++.. .-.+++.|.++..+.|+.+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 6778999999999999999999887765 566667888866542 45788899999999999877777
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.+|.-+....-|++++..-++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777766666677777766666653
No 493
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.95 E-value=0.029 Score=62.63 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=67.4
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.+..|..+.|+.|......++++....|++.+-.+|..+.+++++.|+|..+|++++ ||+.+ ..|. +.+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 193 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLE 193 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 35577899999999999999999999999999988999999999999999999999976 77644 4566 7777776
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.+..
T Consensus 194 ~l~~ 197 (515)
T TIGR03140 194 KLEE 197 (515)
T ss_pred HHhh
Confidence 6653
No 494
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.91 E-value=0.017 Score=53.49 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=60.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--C-CcEEEEEeccc-----------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--P-SINFLKVDIDE----------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~-~~~~~~vd~d~----------------------------------- 669 (714)
..++|+.|....|+.|..+.+.+.++..++ + .+.|+.+++-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 347889999999999999999999998887 4 47777776421
Q ss_pred ---------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 ---------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 ---------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
....++.++|.++|||+| ||+.+ .|. +.++|...|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 011144669999999988 99985 566 99999999875
No 495
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.85 E-value=0.96 Score=45.26 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.-+.+-+...+..+..+-++....|++++|+.+.+|..++.- ..--..+|.+.|+++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 334455566677777888888888888888888877777653 223456777777777764
No 496
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.91 Score=41.27 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
.+.++.++|+..|..+-+..-...+ ..+.+..+.+....|+...|+..|.++-...+-. .....+.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Yp------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~AR 135 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYP------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLAR 135 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcch------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHH
Confidence 3445556666666655554444321 4455566666666666666666666655433322 22212222
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGL-RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+ .-+..+...|-|++-....+..- ..+|-...+...||..-++.|++.+|..+|.++.. +..-+....+++
T Consensus 136 l-------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 136 L-------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred H-------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 2 12555666666666555444321 22344455556677777777777777777776655 333344444555
Q ss_pred HHHH
Q 005108 556 ASNS 559 (714)
Q Consensus 556 ~~~~ 559 (714)
++.+
T Consensus 208 q~ml 211 (221)
T COG4649 208 QIML 211 (221)
T ss_pred HHHH
Confidence 5443
No 497
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.84 E-value=0.087 Score=44.13 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNA---AFRSNRAAALTGLGR-----------IGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~ 313 (714)
++..++..|++-+|+++.+..+..++++. ..+...|.++..+.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56789999999999999999999888775 556666888876542 3568999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+.+|.-+.....|+++....++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888877666677777776666654
No 498
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.82 E-value=0.04 Score=48.66 Aligned_cols=101 Identities=12% Similarity=0.187 Sum_probs=70.1
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecC--CCcc-c-cccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCcc--ccc
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSA--SNLH-C-KQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVR--IVP 683 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~--~c~~-C-~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~--~~P 683 (714)
+.++++.+.+...-...+..++-|.-. .|.. + ..+...+.+++.++. . +.|+++|.++...+.+.|||. .+|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 445555555554444455666666532 1222 2 345678888888885 3 899999999998999999995 499
Q ss_pred eEEEEeCCeEEEE-EcCC-CHHHHHHHHhhh
Q 005108 684 TFKIYKNGSRMKE-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~~~~~-~~g~-~~~~l~~~~~~~ 712 (714)
+++++...+.... +.|. +.+.|+++++.+
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred EEEEEecccCccccccCccCHHHHHHHHHHH
Confidence 9998844332333 6677 999999999876
No 499
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.74 E-value=0.16 Score=45.80 Aligned_cols=105 Identities=10% Similarity=-0.063 Sum_probs=83.3
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
....+-...++.+++...+..+--+.|..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+--.++.|+..+++.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 44667778889999999999888899999999999999999999999999999999999999998888899999888875
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+ =..+-+++++..+ ++.....+...
T Consensus 95 ~-Wr~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 95 S-WRRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred H-HHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 3 2222344555443 55555444433
No 500
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=1.6 Score=49.17 Aligned_cols=250 Identities=15% Similarity=0.054 Sum_probs=138.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 281 NRAAALTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
..-..+.+...|+-|+...+.- ..+++. ...+..+|.-+++.|++++|...|-+.+...++..... .
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~-----k------ 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK-----K------ 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH-----H------
Confidence 4455677778888888776543 344443 56788889999999999999999999988777765421 1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
+.......+-..+++..++.+-.+.... ..+-.+|.++++.++-.++.++.- .. . .. .+ .-.
T Consensus 407 -fLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~efI~~~~----~g-~-~~-------fd---~e~ 468 (933)
T KOG2114|consen 407 -FLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEFISKCD----KG-E-WF-------FD---VET 468 (933)
T ss_pred -hcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHHHhcCC----Cc-c-ee-------ee---HHH
Confidence 1122233344455666666655433333 347899999999998877776543 11 0 00 00 011
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYC 518 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 518 (714)
.-.++.+.+-+++|..+..+.-. +..+. -.++...++|++|+.++... .|.. .....
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~----he~vl---------------~ille~~~ny~eAl~yi~sl---p~~e~l~~l~ 526 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK----HEWVL---------------DILLEDLHNYEEALRYISSL---PISELLRTLN 526 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc----CHHHH---------------HHHHHHhcCHHHHHHHHhcC---CHHHHHHHHH
Confidence 12334444555555555444322 22232 23467788999999988752 2222 34445
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-hC-CCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALL-IQ-PNYTKAL----LRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
..|..+.... .++-...+-+.+. .. +...... ...-.+..-.++++.-..+++...+.-|+.++
T Consensus 527 kyGk~Ll~h~-P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 527 KYGKILLEHD-PEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHHHHHHhhC-hHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 5666665533 3333333333332 11 1110000 11122333445666666666666666666555
Done!