Query 005108
Match_columns 714
No_of_seqs 1119 out of 4391
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ieg_A DNAJ homolog subfamily 100.0 3.7E-35 1.3E-39 309.9 48.5 344 241-599 2-357 (359)
2 2y4t_A DNAJ homolog subfamily 100.0 2.9E-35 9.9E-40 322.0 45.2 357 235-606 19-387 (450)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-36 9.4E-41 323.8 36.0 329 237-592 28-383 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-35 1.5E-39 314.4 37.8 327 247-595 4-352 (388)
5 3fp2_A TPR repeat-containing p 100.0 1.1E-31 3.7E-36 300.6 34.5 330 241-599 24-479 (537)
6 2xpi_A Anaphase-promoting comp 100.0 1.6E-30 5.6E-35 295.1 40.8 324 241-592 199-594 (597)
7 2gw1_A Mitochondrial precursor 100.0 4.3E-31 1.5E-35 293.7 34.9 222 350-599 236-466 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 1.4E-30 4.8E-35 284.8 35.7 328 236-581 54-414 (450)
9 3hym_B Cell division cycle pro 100.0 1.2E-30 4E-35 272.3 30.9 289 238-594 18-316 (330)
10 3fp2_A TPR repeat-containing p 100.0 9.2E-30 3.2E-34 284.8 36.1 328 228-590 45-504 (537)
11 2gw1_A Mitochondrial precursor 100.0 3.6E-30 1.2E-34 286.2 32.3 326 241-594 5-424 (514)
12 2xpi_A Anaphase-promoting comp 100.0 2.1E-29 7E-34 286.1 36.7 327 238-599 146-567 (597)
13 3ieg_A DNAJ homolog subfamily 100.0 1.2E-28 4E-33 259.9 36.6 314 233-564 28-356 (359)
14 1fch_A Peroxisomal targeting s 100.0 1.8E-29 6.3E-34 267.9 22.9 293 251-577 34-359 (368)
15 4eqf_A PEX5-related protein; a 100.0 1.1E-28 3.7E-33 262.2 23.6 278 240-575 63-354 (365)
16 3cv0_A Peroxisome targeting si 100.0 4.5E-28 1.5E-32 252.3 24.7 284 241-579 20-317 (327)
17 2h6f_A Protein farnesyltransfe 100.0 1.2E-27 4.3E-32 253.7 26.1 256 237-561 92-366 (382)
18 4g1t_A Interferon-induced prot 100.0 1.8E-27 6.3E-32 261.9 27.3 321 237-589 89-471 (472)
19 4g1t_A Interferon-induced prot 100.0 2.3E-26 8E-31 253.0 35.9 331 241-592 50-416 (472)
20 1fch_A Peroxisomal targeting s 100.0 1.7E-27 5.6E-32 252.8 25.3 316 254-600 13-348 (368)
21 3hym_B Cell division cycle pro 100.0 6.2E-27 2.1E-31 243.9 29.0 265 233-565 47-322 (330)
22 2h6f_A Protein farnesyltransfe 100.0 8.1E-28 2.8E-32 255.1 21.9 260 267-595 88-366 (382)
23 4eqf_A PEX5-related protein; a 100.0 2.3E-27 7.8E-32 251.9 21.3 279 262-598 47-343 (365)
24 3u4t_A TPR repeat-containing p 99.9 8.4E-26 2.9E-30 228.9 25.0 180 388-593 76-266 (272)
25 3uq3_A Heat shock protein STI1 99.9 1E-25 3.4E-30 225.8 24.6 240 241-591 4-256 (258)
26 3mkr_A Coatomer subunit epsilo 99.9 3.7E-25 1.3E-29 226.9 28.5 263 286-588 9-275 (291)
27 3u4t_A TPR repeat-containing p 99.9 2E-25 7E-30 226.1 25.3 252 241-561 2-268 (272)
28 3uq3_A Heat shock protein STI1 99.9 3.2E-25 1.1E-29 222.2 25.9 222 275-600 4-225 (258)
29 3cv0_A Peroxisome targeting si 99.9 1.4E-24 4.8E-29 225.7 27.5 269 276-599 21-303 (327)
30 3sf4_A G-protein-signaling mod 99.9 2E-25 6.8E-30 239.7 21.7 313 240-567 7-366 (406)
31 2pl2_A Hypothetical conserved 99.9 1.4E-24 4.9E-29 212.5 22.5 211 239-575 2-212 (217)
32 2pl2_A Hypothetical conserved 99.9 3.1E-24 1.1E-28 210.1 22.3 186 230-507 27-212 (217)
33 2ooe_A Cleavage stimulation fa 99.9 1.5E-22 5.2E-27 226.3 38.6 326 237-591 8-472 (530)
34 4a1s_A PINS, partner of inscut 99.9 9.6E-25 3.3E-29 235.4 20.0 291 240-580 46-375 (411)
35 2xm6_A Protein corresponding t 99.9 3.6E-22 1.2E-26 221.0 40.1 310 240-590 73-448 (490)
36 3ro2_A PINS homolog, G-protein 99.9 4.7E-24 1.6E-28 222.0 21.2 290 242-581 5-336 (338)
37 2xm6_A Protein corresponding t 99.9 1.5E-21 5.2E-26 215.9 42.3 318 237-594 34-411 (490)
38 3sf4_A G-protein-signaling mod 99.9 3.9E-24 1.3E-28 229.6 20.4 310 274-598 7-363 (406)
39 3mkr_A Coatomer subunit epsilo 99.9 1.3E-22 4.3E-27 208.0 26.7 278 249-571 6-288 (291)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.2E-23 2.8E-27 206.9 21.4 246 253-571 16-269 (275)
41 3vtx_A MAMA; tetratricopeptide 99.9 1.5E-22 5.1E-27 192.3 21.3 173 385-583 4-176 (184)
42 1ouv_A Conserved hypothetical 99.9 2.5E-21 8.5E-26 196.4 30.9 95 238-336 2-104 (273)
43 2q7f_A YRRB protein; TPR, prot 99.9 1.6E-22 5.3E-27 200.8 20.6 214 352-592 24-237 (243)
44 1ouv_A Conserved hypothetical 99.9 3.5E-21 1.2E-25 195.4 30.2 231 272-582 2-256 (273)
45 2q7f_A YRRB protein; TPR, prot 99.9 2.5E-22 8.6E-27 199.3 20.6 219 241-561 22-240 (243)
46 2ho1_A Type 4 fimbrial biogene 99.9 2.7E-21 9.2E-26 193.3 26.7 211 351-588 37-249 (252)
47 2ho1_A Type 4 fimbrial biogene 99.9 3.3E-21 1.1E-25 192.6 27.3 216 237-552 31-247 (252)
48 4abn_A Tetratricopeptide repea 99.9 6.9E-22 2.4E-26 217.2 22.0 223 257-574 83-318 (474)
49 2ond_A Cleavage stimulation fa 99.9 2.9E-21 1E-25 199.9 25.5 251 259-588 33-303 (308)
50 2vq2_A PILW, putative fimbrial 99.9 1.4E-20 4.7E-25 184.0 28.1 211 351-588 8-222 (225)
51 2vq2_A PILW, putative fimbrial 99.9 1.3E-20 4.4E-25 184.3 27.1 216 238-553 4-221 (225)
52 4abn_A Tetratricopeptide repea 99.9 1.8E-21 6E-26 213.9 22.5 206 366-599 83-309 (474)
53 2ooe_A Cleavage stimulation fa 99.9 4.6E-20 1.6E-24 206.1 34.1 317 265-595 2-438 (530)
54 4i17_A Hypothetical protein; T 99.9 3E-21 1E-25 190.2 21.1 216 352-593 8-225 (228)
55 3e4b_A ALGK; tetratricopeptide 99.9 2.1E-21 7.2E-26 211.9 21.7 302 246-593 7-365 (452)
56 3vtx_A MAMA; tetratricopeptide 99.9 6.9E-21 2.3E-25 180.7 22.3 174 240-469 3-176 (184)
57 3ulq_A Response regulator aspa 99.9 4.5E-21 1.5E-25 204.9 21.6 319 238-579 8-370 (383)
58 4i17_A Hypothetical protein; T 99.9 4.8E-20 1.6E-24 181.5 27.3 211 239-523 4-223 (228)
59 2ond_A Cleavage stimulation fa 99.9 3.8E-20 1.3E-24 191.5 25.8 231 293-584 33-277 (308)
60 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-20 7.2E-25 189.1 21.7 231 285-585 14-252 (275)
61 3nf1_A KLC 1, kinesin light ch 99.9 1.6E-21 5.4E-26 201.0 13.3 255 237-545 22-309 (311)
62 4gyw_A UDP-N-acetylglucosamine 99.9 5.4E-21 1.8E-25 218.3 18.6 170 385-580 8-177 (723)
63 4a1s_A PINS, partner of inscut 99.9 3.4E-21 1.2E-25 207.5 15.8 275 275-599 47-360 (411)
64 3nf1_A KLC 1, kinesin light ch 99.8 2.2E-21 7.6E-26 199.9 11.1 252 272-580 23-310 (311)
65 3ro2_A PINS homolog, G-protein 99.8 2.8E-20 9.7E-25 193.3 18.5 272 276-597 5-318 (338)
66 4gyw_A UDP-N-acetylglucosamine 99.8 2.7E-20 9.2E-25 212.5 19.0 174 237-466 4-177 (723)
67 3e4b_A ALGK; tetratricopeptide 99.8 6E-19 2E-23 192.5 25.0 298 241-592 68-400 (452)
68 3dra_A Protein farnesyltransfe 99.8 2.4E-18 8.2E-23 175.2 27.4 254 242-556 32-301 (306)
69 1qqe_A Vesicular transport pro 99.8 2.9E-19 1E-23 183.2 20.7 186 390-589 81-281 (292)
70 3ulq_A Response regulator aspa 99.8 1.5E-19 5.1E-24 193.1 19.1 250 278-545 105-370 (383)
71 1hz4_A MALT regulatory protein 99.8 3.6E-18 1.2E-22 181.5 29.6 285 242-579 14-324 (373)
72 3as5_A MAMA; tetratricopeptide 99.8 9.2E-19 3.2E-23 165.1 21.4 171 386-582 8-178 (186)
73 2pzi_A Probable serine/threoni 99.8 3.2E-19 1.1E-23 204.6 21.8 188 236-495 388-583 (681)
74 3q15_A PSP28, response regulat 99.8 9.4E-19 3.2E-23 186.6 23.4 307 250-578 20-366 (378)
75 3zzx_A Thioredoxin; oxidoreduc 99.8 4.2E-20 1.5E-24 156.9 9.3 101 613-713 3-105 (105)
76 3qky_A Outer membrane assembly 99.8 1.7E-18 5.7E-23 174.3 22.4 86 237-322 10-101 (261)
77 3qky_A Outer membrane assembly 99.8 3E-18 1E-22 172.5 24.1 194 385-598 14-248 (261)
78 2av4_A Thioredoxin-like protei 99.8 4.8E-20 1.6E-24 162.8 9.2 101 612-712 23-137 (160)
79 1xi4_A Clathrin heavy chain; a 99.8 2.4E-17 8E-22 191.0 33.0 302 240-598 983-1330(1630)
80 2pzi_A Probable serine/threoni 99.8 2.1E-19 7.2E-24 206.2 15.3 216 362-605 402-633 (681)
81 4ga2_A E3 SUMO-protein ligase 99.8 1.1E-19 3.7E-24 166.4 10.2 143 439-593 2-145 (150)
82 3dra_A Protein farnesyltransfe 99.8 1.2E-17 4E-22 170.1 25.7 231 291-589 48-300 (306)
83 3urz_A Uncharacterized protein 99.8 1E-18 3.6E-23 169.5 16.7 141 437-591 57-199 (208)
84 1xi4_A Clathrin heavy chain; a 99.8 4.9E-17 1.7E-21 188.3 32.5 269 254-574 1088-1381(1630)
85 3q15_A PSP28, response regulat 99.8 1.7E-18 5.8E-23 184.5 19.3 244 277-544 102-366 (378)
86 2qsi_A Putative hydrogenase ex 99.8 1.4E-19 4.8E-24 157.8 8.0 94 619-712 23-121 (137)
87 4ga2_A E3 SUMO-protein ligase 99.8 2.6E-19 9E-24 163.8 9.5 146 392-563 3-149 (150)
88 2qgv_A Hydrogenase-1 operon pr 99.8 2.3E-19 7.8E-24 157.1 7.9 95 618-712 24-123 (140)
89 3urz_A Uncharacterized protein 99.8 2E-17 6.7E-22 160.4 22.0 171 241-468 3-191 (208)
90 4gco_A Protein STI-1; structur 99.8 4.3E-18 1.5E-22 150.5 15.1 120 460-591 5-124 (126)
91 3edt_B KLC 2, kinesin light ch 99.8 3.2E-18 1.1E-22 173.3 14.7 230 254-543 13-281 (283)
92 1qqe_A Vesicular transport pro 99.8 1.7E-17 6E-22 170.0 20.1 239 257-558 32-284 (292)
93 1b89_A Protein (clathrin heavy 99.8 3.2E-19 1.1E-23 187.1 6.8 273 240-575 30-309 (449)
94 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.6E-17 1.2E-21 160.7 20.4 84 241-324 3-92 (225)
95 3dss_A Geranylgeranyl transfer 99.7 5.9E-16 2E-20 158.3 28.8 170 251-474 38-233 (331)
96 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.9E-17 2E-21 159.1 20.1 191 353-582 6-218 (225)
97 3edt_B KLC 2, kinesin light ch 99.7 4.8E-18 1.6E-22 171.9 11.2 234 288-578 13-282 (283)
98 3as5_A MAMA; tetratricopeptide 99.7 7.2E-17 2.5E-21 152.0 18.5 170 352-548 9-178 (186)
99 3gyz_A Chaperone protein IPGC; 99.7 1.1E-17 3.8E-22 152.4 11.5 125 446-582 14-138 (151)
100 3dss_A Geranylgeranyl transfer 99.7 1.3E-15 4.5E-20 155.8 27.3 246 287-590 40-317 (331)
101 4gco_A Protein STI-1; structur 99.7 4.3E-17 1.5E-21 144.1 14.1 113 434-558 13-125 (126)
102 3evi_A Phosducin-like protein 99.7 1.9E-17 6.4E-22 143.1 10.8 99 611-713 4-113 (118)
103 2r5s_A Uncharacterized protein 99.7 5E-17 1.7E-21 153.0 14.5 161 389-576 9-172 (176)
104 1hz4_A MALT regulatory protein 99.7 9.7E-16 3.3E-20 162.6 25.2 283 243-584 54-356 (373)
105 2ifu_A Gamma-SNAP; membrane fu 99.7 2E-16 7E-21 163.2 19.3 239 254-569 3-253 (307)
106 1b89_A Protein (clathrin heavy 99.7 3.2E-17 1.1E-21 171.9 12.7 279 239-575 58-353 (449)
107 2vsy_A XCC0866; transferase, g 99.7 2.1E-16 7.1E-21 178.0 19.3 160 399-584 2-164 (568)
108 4euy_A Uncharacterized protein 99.7 2E-17 6.8E-22 141.1 8.1 99 614-712 4-103 (105)
109 2vgx_A Chaperone SYCD; alterna 99.7 6.4E-17 2.2E-21 147.4 11.7 134 454-599 7-140 (148)
110 4f3v_A ESX-1 secretion system 99.7 7E-16 2.4E-20 153.2 19.9 223 351-589 7-248 (282)
111 3qou_A Protein YBBN; thioredox 99.7 2.2E-16 7.6E-21 161.2 16.5 168 382-576 114-283 (287)
112 3q7a_A Farnesyltransferase alp 99.7 3.7E-15 1.3E-19 152.9 24.7 249 240-589 52-344 (349)
113 3gyz_A Chaperone protein IPGC; 99.7 1.3E-16 4.6E-21 145.3 12.5 125 398-548 14-138 (151)
114 3q7a_A Farnesyltransferase alp 99.7 5.2E-15 1.8E-19 151.9 25.4 237 227-557 73-346 (349)
115 3f3q_A Thioredoxin-1; His TAG, 99.7 1.3E-16 4.4E-21 137.0 10.7 100 613-712 9-108 (109)
116 1p5q_A FKBP52, FK506-binding p 99.7 1E-17 3.5E-22 175.1 4.4 184 365-577 79-294 (336)
117 4f3v_A ESX-1 secretion system 99.7 3.1E-16 1.1E-20 155.8 13.4 229 243-555 8-248 (282)
118 2ifu_A Gamma-SNAP; membrane fu 99.7 1.9E-16 6.6E-21 163.4 12.4 174 394-583 44-229 (307)
119 3qfa_C Thioredoxin; protein-pr 99.7 1.4E-16 4.9E-21 138.4 9.1 100 613-712 14-115 (116)
120 2xcb_A PCRH, regulatory protei 99.7 2.8E-16 9.5E-21 142.1 11.2 132 455-598 5-136 (142)
121 1gh2_A Thioredoxin-like protei 99.7 3.2E-16 1.1E-20 134.1 10.4 101 612-712 3-105 (107)
122 4e6h_A MRNA 3'-END-processing 99.7 7E-14 2.4E-18 157.7 32.1 341 226-592 50-514 (679)
123 2vsy_A XCC0866; transferase, g 99.7 2E-15 6.9E-20 169.9 19.3 165 364-555 2-169 (568)
124 2hr2_A Hypothetical protein; a 99.6 3.9E-16 1.3E-20 140.5 9.8 121 477-597 8-151 (159)
125 1r26_A Thioredoxin; redox-acti 99.6 5.3E-16 1.8E-20 136.6 10.5 101 612-712 21-121 (125)
126 2r5s_A Uncharacterized protein 99.6 2.7E-15 9.1E-20 141.1 15.9 162 353-542 8-172 (176)
127 1p5q_A FKBP52, FK506-binding p 99.6 5.5E-17 1.9E-21 169.6 4.0 175 399-601 78-283 (336)
128 2oe3_A Thioredoxin-3; electron 99.6 4.6E-16 1.6E-20 134.6 9.2 102 611-712 13-114 (114)
129 2fo7_A Synthetic consensus TPR 99.6 1E-14 3.5E-19 129.0 18.2 134 436-581 3-136 (136)
130 3rjv_A Putative SEL1 repeat pr 99.6 1.7E-14 5.9E-19 140.0 20.9 186 369-591 4-209 (212)
131 3upv_A Heat shock protein STI1 99.6 5.6E-15 1.9E-19 130.3 15.8 115 481-595 5-125 (126)
132 3gix_A Thioredoxin-like protei 99.6 5.2E-16 1.8E-20 141.1 9.3 101 612-712 5-119 (149)
133 2l6c_A Thioredoxin; oxidoreduc 99.6 6.5E-16 2.2E-20 132.8 9.3 98 615-713 7-105 (110)
134 3m9j_A Thioredoxin; oxidoreduc 99.6 9.4E-16 3.2E-20 130.6 10.0 100 613-712 3-104 (105)
135 3d6i_A Monothiol glutaredoxin- 99.6 1.3E-15 4.4E-20 131.5 10.7 99 614-712 4-107 (112)
136 1xfl_A Thioredoxin H1; AT3G510 99.6 8.1E-16 2.8E-20 135.3 9.5 102 611-712 17-122 (124)
137 3iv4_A Putative oxidoreductase 99.6 3E-16 1E-20 130.8 6.2 102 608-710 4-112 (112)
138 3qou_A Protein YBBN; thioredox 99.6 1.1E-14 3.7E-19 148.6 19.0 164 352-542 118-283 (287)
139 3rkv_A Putative peptidylprolyl 99.6 6E-15 2E-19 136.5 15.0 124 479-602 10-152 (162)
140 1ep7_A Thioredoxin CH1, H-type 99.6 1.2E-15 4.2E-20 131.6 9.2 102 611-712 3-109 (112)
141 2vgx_A Chaperone SYCD; alterna 99.6 1.3E-15 4.4E-20 138.7 9.6 120 406-551 7-126 (148)
142 4gcn_A Protein STI-1; structur 99.6 9.3E-15 3.2E-19 129.2 14.8 110 481-591 9-125 (127)
143 2c2l_A CHIP, carboxy terminus 99.6 1.3E-14 4.4E-19 147.5 17.5 196 239-463 1-199 (281)
144 2xcb_A PCRH, regulatory protei 99.6 4.9E-15 1.7E-19 133.8 12.6 129 407-561 5-133 (142)
145 2wz9_A Glutaredoxin-3; protein 99.6 1.8E-15 6.1E-20 138.6 9.5 102 611-712 13-116 (153)
146 2vim_A Thioredoxin, TRX; thior 99.6 2.9E-15 9.9E-20 127.2 9.9 99 614-712 3-103 (104)
147 1syr_A Thioredoxin; SGPP, stru 99.6 2.4E-15 8.3E-20 129.7 9.3 100 613-712 11-110 (112)
148 2e2e_A Formate-dependent nitri 99.6 4.8E-15 1.6E-19 139.3 12.1 135 444-590 20-157 (177)
149 3gnj_A Thioredoxin domain prot 99.6 3.5E-15 1.2E-19 128.5 9.9 96 617-712 10-108 (111)
150 2xc2_A Thioredoxinn; oxidoredu 99.6 2.9E-15 1E-19 130.4 9.5 100 612-712 15-116 (117)
151 3sz7_A HSC70 cochaperone (SGT) 99.6 1.8E-14 6.1E-19 133.6 15.1 115 485-599 16-132 (164)
152 4e6h_A MRNA 3'-END-processing 99.6 7.2E-13 2.5E-17 149.5 30.7 318 236-580 94-536 (679)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.2E-14 1.1E-18 137.8 17.1 135 433-582 5-155 (213)
154 1a17_A Serine/threonine protei 99.6 7.1E-14 2.4E-18 129.1 18.7 134 432-577 11-146 (166)
155 1dce_A Protein (RAB geranylger 99.6 3.3E-15 1.1E-19 166.4 11.3 193 361-580 38-270 (567)
156 3mv2_B Coatomer subunit epsilo 99.6 6.2E-14 2.1E-18 141.0 19.4 190 370-589 85-294 (310)
157 2voc_A Thioredoxin; electron t 99.6 6.2E-15 2.1E-19 127.1 10.4 93 619-712 9-103 (112)
158 2vm1_A Thioredoxin, thioredoxi 99.6 4.8E-15 1.7E-19 129.1 9.7 102 611-712 7-112 (118)
159 2ppt_A Thioredoxin-2; thiredox 99.6 6.1E-15 2.1E-19 135.0 10.6 102 610-712 47-150 (155)
160 3rjv_A Putative SEL1 repeat pr 99.6 1.2E-13 4E-18 134.1 20.3 107 434-555 85-207 (212)
161 1ti3_A Thioredoxin H, PTTRXH1; 99.6 2.9E-15 9.8E-20 129.5 7.7 103 610-712 4-110 (113)
162 2j23_A Thioredoxin; immune pro 99.6 4.5E-15 1.5E-19 130.0 9.0 103 610-712 15-119 (121)
163 2pu9_C TRX-F, thioredoxin F-ty 99.6 5.5E-15 1.9E-19 127.2 9.3 100 612-712 7-109 (111)
164 3d22_A TRXH4, thioredoxin H-ty 99.6 5.7E-15 1.9E-19 132.9 9.5 102 611-712 25-130 (139)
165 2es7_A Q8ZP25_salty, putative 99.6 2.3E-15 7.9E-20 135.0 6.8 94 619-712 25-123 (142)
166 2fo7_A Synthetic consensus TPR 99.6 8.4E-14 2.9E-18 123.1 17.0 134 388-547 3-136 (136)
167 3die_A Thioredoxin, TRX; elect 99.6 8.2E-15 2.8E-19 124.9 9.8 95 617-712 9-105 (106)
168 1xwb_A Thioredoxin; dimerizati 99.6 8.6E-15 2.9E-19 124.8 9.9 99 614-712 4-105 (106)
169 3emx_A Thioredoxin; structural 99.6 3.7E-15 1.3E-19 133.2 7.8 100 609-712 15-124 (135)
170 3tco_A Thioredoxin (TRXA-1); d 99.6 6.1E-15 2.1E-19 126.4 8.8 96 617-712 10-107 (109)
171 1hh8_A P67PHOX, NCF-2, neutrop 99.6 9.3E-14 3.2E-18 134.5 18.1 130 389-547 9-154 (213)
172 2o8v_B Thioredoxin 1; disulfid 99.6 1.2E-14 4.1E-19 128.5 10.7 95 618-712 29-126 (128)
173 1t00_A Thioredoxin, TRX; redox 99.6 1.1E-14 3.9E-19 125.5 10.2 100 613-712 8-109 (112)
174 2c2l_A CHIP, carboxy terminus 99.6 1.2E-14 4.2E-19 147.7 12.0 193 352-576 5-198 (281)
175 2trx_A Thioredoxin; electron t 99.6 1.6E-14 5.5E-19 123.6 10.8 94 619-712 10-106 (108)
176 3hz4_A Thioredoxin; NYSGXRC, P 99.6 9.7E-15 3.3E-19 131.4 9.8 100 612-712 8-110 (140)
177 2fbn_A 70 kDa peptidylprolyl i 99.6 1.2E-14 4.2E-19 139.3 11.0 151 440-602 10-176 (198)
178 2vlu_A Thioredoxin, thioredoxi 99.6 1E-14 3.5E-19 127.9 9.5 100 613-712 15-118 (122)
179 1nsw_A Thioredoxin, TRX; therm 99.5 9.1E-15 3.1E-19 124.4 8.7 94 619-712 8-103 (105)
180 1qgv_A Spliceosomal protein U5 99.5 7.4E-15 2.5E-19 132.2 8.6 100 613-712 6-119 (142)
181 2fbn_A 70 kDa peptidylprolyl i 99.5 1.2E-14 3.9E-19 139.5 10.3 171 392-576 10-185 (198)
182 2f51_A Thioredoxin; electron t 99.5 1E-14 3.5E-19 127.0 9.0 97 617-713 11-112 (118)
183 3upv_A Heat shock protein STI1 99.5 9.6E-14 3.3E-18 122.2 15.5 116 434-561 4-125 (126)
184 2trc_P Phosducin, MEKA, PP33; 99.5 2.2E-14 7.5E-19 138.5 12.1 103 610-713 99-212 (217)
185 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.9E-16 1.7E-20 169.5 0.6 144 446-601 246-404 (457)
186 2dbc_A PDCL2, unnamed protein 99.5 9.5E-15 3.2E-19 130.5 8.8 99 611-713 11-120 (135)
187 3q49_B STIP1 homology and U bo 99.5 8.9E-14 3E-18 124.2 14.9 123 463-597 4-131 (137)
188 1dce_A Protein (RAB geranylger 99.5 1.7E-13 5.8E-18 152.6 20.3 175 397-597 39-241 (567)
189 2qfc_A PLCR protein; TPR, HTH, 99.5 2.2E-13 7.7E-18 139.3 19.7 175 390-578 79-267 (293)
190 1faa_A Thioredoxin F; electron 99.5 1.2E-14 4.1E-19 127.9 8.5 95 619-713 26-123 (124)
191 3ul3_B Thioredoxin, thioredoxi 99.5 8.8E-15 3E-19 129.5 7.7 92 621-712 35-128 (128)
192 3cxg_A Putative thioredoxin; m 99.5 1.1E-14 3.9E-19 129.6 8.4 101 611-712 21-127 (133)
193 1w4v_A Thioredoxin, mitochondr 99.5 3E-14 1E-18 124.3 10.8 101 612-712 14-117 (119)
194 4gcn_A Protein STI-1; structur 99.5 1E-13 3.5E-18 122.4 14.3 106 240-345 6-119 (127)
195 3uvt_A Thioredoxin domain-cont 99.5 1.5E-14 5.2E-19 124.4 8.6 96 617-713 11-111 (111)
196 2e0q_A Thioredoxin; electron t 99.5 1.5E-14 5.2E-19 122.6 8.4 94 619-712 7-101 (104)
197 1dby_A Chloroplast thioredoxin 99.5 2.6E-14 8.9E-19 122.0 9.8 94 619-712 9-105 (107)
198 2i4a_A Thioredoxin; acidophIle 99.5 2.9E-14 1E-18 121.7 10.2 94 619-712 10-106 (107)
199 1oaz_A Thioredoxin 1; immune s 99.5 2.6E-14 9E-19 125.3 9.8 94 619-712 11-121 (123)
200 3p2a_A Thioredoxin 2, putative 99.5 2.1E-14 7.3E-19 130.6 9.6 101 611-712 39-141 (148)
201 1a0r_P Phosducin, MEKA, PP33; 99.5 5.4E-14 1.8E-18 137.3 12.8 103 610-713 112-225 (245)
202 3mv2_B Coatomer subunit epsilo 99.5 4.9E-13 1.7E-17 134.5 19.9 260 240-551 12-290 (310)
203 1hxi_A PEX5, peroxisome target 99.5 7.9E-14 2.7E-18 122.0 12.4 99 485-583 22-120 (121)
204 1thx_A Thioredoxin, thioredoxi 99.5 6.5E-14 2.2E-18 121.2 11.7 100 612-712 9-111 (115)
205 3u3w_A Transcriptional activat 99.5 2.2E-13 7.6E-18 139.3 17.2 173 392-578 81-267 (293)
206 1fb6_A Thioredoxin M; electron 99.5 4.3E-14 1.5E-18 120.1 9.9 94 619-712 8-104 (105)
207 2lni_A Stress-induced-phosphop 99.5 2.4E-13 8.3E-18 120.2 15.2 118 434-563 16-133 (133)
208 3sz7_A HSC70 cochaperone (SGT) 99.5 1.6E-13 5.3E-18 127.1 14.5 115 433-559 10-124 (164)
209 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.5E-14 5E-19 157.8 8.7 163 398-575 246-413 (457)
210 2vyi_A SGTA protein; chaperone 99.5 3.9E-13 1.3E-17 118.2 15.6 119 434-564 12-130 (131)
211 2yzu_A Thioredoxin; redox prot 99.5 3.1E-14 1.1E-18 121.9 8.2 94 619-712 9-104 (109)
212 2e2e_A Formate-dependent nitri 99.5 5.5E-14 1.9E-18 131.9 10.4 130 396-551 20-152 (177)
213 2i1u_A Thioredoxin, TRX, MPT46 99.5 5.2E-14 1.8E-18 123.1 9.3 99 613-712 15-116 (121)
214 2lni_A Stress-induced-phosphop 99.5 3.1E-13 1.1E-17 119.5 14.4 111 485-595 21-131 (133)
215 1x5d_A Protein disulfide-isome 99.5 7.5E-14 2.5E-18 124.4 10.0 94 619-712 15-115 (133)
216 3h79_A Thioredoxin-like protei 99.5 4E-14 1.4E-18 125.1 8.0 97 617-713 21-127 (127)
217 2dj1_A Protein disulfide-isome 99.5 3.7E-14 1.3E-18 127.7 7.7 99 612-712 19-122 (140)
218 1elw_A TPR1-domain of HOP; HOP 99.5 1E-12 3.5E-17 113.2 16.5 111 482-592 6-116 (118)
219 1v98_A Thioredoxin; oxidoreduc 99.5 7E-14 2.4E-18 125.8 9.2 94 619-712 41-136 (140)
220 2vyi_A SGTA protein; chaperone 99.5 1.5E-12 5E-17 114.4 17.6 113 485-597 17-129 (131)
221 2dba_A Smooth muscle cell asso 99.5 1E-12 3.6E-17 118.6 17.0 119 462-592 22-143 (148)
222 2qfc_A PLCR protein; TPR, HTH, 99.5 1.9E-12 6.7E-17 132.2 20.8 176 352-543 76-266 (293)
223 2hr2_A Hypothetical protein; a 99.5 1.1E-13 3.8E-18 124.5 9.9 118 431-555 8-143 (159)
224 3dml_A Putative uncharacterize 99.5 4.5E-14 1.5E-18 119.7 6.7 85 628-712 18-108 (116)
225 1wmj_A Thioredoxin H-type; str 99.5 9.4E-15 3.2E-19 129.7 2.5 102 611-712 15-120 (130)
226 3hxs_A Thioredoxin, TRXP; elec 99.5 1.2E-13 4.3E-18 124.4 9.7 84 628-712 51-137 (141)
227 1a17_A Serine/threonine protei 99.5 8.9E-13 3E-17 121.6 15.7 131 387-543 14-146 (166)
228 3dxb_A Thioredoxin N-terminall 99.5 1.5E-13 5.2E-18 134.0 10.9 96 617-712 18-116 (222)
229 2l57_A Uncharacterized protein 99.5 7.4E-14 2.5E-18 123.1 7.8 90 624-713 22-116 (126)
230 2dml_A Protein disulfide-isome 99.5 1.4E-13 4.9E-18 122.0 9.7 100 612-712 19-122 (130)
231 2xev_A YBGF; tetratricopeptide 99.5 1.5E-12 5.2E-17 114.7 16.1 110 485-594 7-122 (129)
232 2l5l_A Thioredoxin; structural 99.5 1.7E-13 5.9E-18 122.5 10.0 85 627-712 37-124 (136)
233 1x5e_A Thioredoxin domain cont 99.5 7.8E-14 2.7E-18 123.0 7.4 93 617-712 13-108 (126)
234 1mek_A Protein disulfide isome 99.5 8.3E-14 2.8E-18 121.5 7.5 95 618-712 14-115 (120)
235 3rkv_A Putative peptidylprolyl 99.5 3.7E-13 1.3E-17 124.3 12.3 133 432-566 9-150 (162)
236 1na0_A Designed protein CTPR3; 99.5 2.9E-12 9.9E-17 111.5 17.2 110 485-594 14-123 (125)
237 3q49_B STIP1 homology and U bo 99.4 9.4E-13 3.2E-17 117.4 14.2 119 434-564 9-132 (137)
238 1zu2_A Mitochondrial import re 99.4 3E-13 1E-17 121.4 10.6 104 491-594 13-137 (158)
239 3aps_A DNAJ homolog subfamily 99.4 6.5E-14 2.2E-18 122.7 6.1 94 619-712 11-111 (122)
240 1na0_A Designed protein CTPR3; 99.4 2.9E-12 9.9E-17 111.5 16.7 117 434-562 9-125 (125)
241 3u3w_A Transcriptional activat 99.4 1.5E-12 5.1E-17 133.1 17.2 173 355-543 79-266 (293)
242 3apq_A DNAJ homolog subfamily 99.4 1.5E-13 5.1E-18 132.9 9.2 96 617-712 103-200 (210)
243 2dj0_A Thioredoxin-related tra 99.4 1.8E-14 6.1E-19 129.2 2.3 94 618-711 14-118 (137)
244 1elw_A TPR1-domain of HOP; HOP 99.4 2.1E-12 7E-17 111.3 15.3 114 434-559 4-117 (118)
245 1hxi_A PEX5, peroxisome target 99.4 5.1E-13 1.7E-17 116.8 11.3 102 436-549 19-120 (121)
246 1elr_A TPR2A-domain of HOP; HO 99.4 2.1E-12 7.3E-17 113.5 15.5 115 483-598 7-128 (131)
247 1zma_A Bacterocin transport ac 99.4 4.2E-14 1.4E-18 123.1 4.3 94 617-711 18-118 (118)
248 1fo5_A Thioredoxin; disulfide 99.4 3.6E-13 1.2E-17 109.4 9.1 79 630-712 4-84 (85)
249 1nho_A Probable thioredoxin; b 99.4 3.2E-13 1.1E-17 109.8 8.4 79 630-712 3-83 (85)
250 2fwh_A Thiol:disulfide interch 99.4 7.2E-14 2.5E-18 124.7 4.7 98 615-712 16-126 (134)
251 2dba_A Smooth muscle cell asso 99.4 3.2E-12 1.1E-16 115.3 15.5 115 434-560 28-145 (148)
252 1ihg_A Cyclophilin 40; ppiase 99.4 1.3E-12 4.4E-17 138.0 14.7 118 484-601 227-360 (370)
253 1wao_1 Serine/threonine protei 99.4 7.7E-14 2.6E-18 152.7 4.9 136 434-581 6-154 (477)
254 3ga4_A Dolichyl-diphosphooligo 99.4 2.6E-13 8.9E-18 124.7 7.2 96 617-712 24-151 (178)
255 2uy1_A Cleavage stimulation fa 99.4 4.5E-10 1.5E-14 123.0 34.3 318 240-574 12-380 (493)
256 2if4_A ATFKBP42; FKBP-like, al 99.4 2.4E-13 8.4E-18 141.9 7.7 152 432-583 177-334 (338)
257 3k9i_A BH0479 protein; putativ 99.4 6.8E-13 2.3E-17 115.2 9.1 101 492-592 2-105 (117)
258 3gw4_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 125.0 12.1 161 396-579 2-178 (203)
259 2kck_A TPR repeat; tetratricop 99.4 1.2E-12 4.2E-17 111.6 10.6 106 464-581 2-110 (112)
260 1wou_A Thioredoxin -related pr 99.4 2.9E-13 9.8E-18 118.7 6.5 100 612-711 6-122 (123)
261 3fk8_A Disulphide isomerase; A 99.4 2.1E-13 7.2E-18 121.5 5.5 88 626-713 27-132 (133)
262 1ihg_A Cyclophilin 40; ppiase 99.4 4E-12 1.4E-16 134.2 15.5 127 432-570 221-363 (370)
263 2xev_A YBGF; tetratricopeptide 99.4 1.1E-11 3.8E-16 109.0 15.6 115 436-562 4-124 (129)
264 4b4t_Q 26S proteasome regulato 99.4 2.9E-11 1E-15 130.6 21.7 211 242-509 4-245 (434)
265 1zu2_A Mitochondrial import re 99.4 2E-12 6.7E-17 116.0 9.5 92 445-548 13-125 (158)
266 1a8l_A Protein disulfide oxido 99.3 1.7E-12 5.9E-17 127.1 9.5 94 619-712 124-224 (226)
267 2dj3_A Protein disulfide-isome 99.3 5.3E-13 1.8E-17 118.8 5.1 94 619-712 15-116 (133)
268 1elr_A TPR2A-domain of HOP; HO 99.3 9.7E-12 3.3E-16 109.2 13.1 117 434-563 4-127 (131)
269 2djj_A PDI, protein disulfide- 99.3 1.1E-12 3.7E-17 114.6 6.7 92 618-712 14-115 (121)
270 2kck_A TPR repeat; tetratricop 99.3 4.8E-12 1.7E-16 107.8 10.7 101 238-338 2-105 (112)
271 3gw4_A Uncharacterized protein 99.3 6.8E-12 2.3E-16 119.9 12.5 169 252-464 2-177 (203)
272 2djk_A PDI, protein disulfide- 99.3 2.1E-12 7.3E-17 114.7 8.1 93 618-712 13-113 (133)
273 2yj7_A LPBCA thioredoxin; oxid 99.0 1.2E-13 4.2E-18 117.4 0.0 89 624-712 15-105 (106)
274 1z6n_A Hypothetical protein PA 99.3 7.6E-13 2.6E-17 121.8 5.2 82 628-710 54-139 (167)
275 3ro3_A PINS homolog, G-protein 99.3 9.3E-12 3.2E-16 113.7 11.7 143 432-580 7-161 (164)
276 2if4_A ATFKBP42; FKBP-like, al 99.3 2.9E-12 9.8E-17 133.8 9.1 113 484-596 183-312 (338)
277 3idv_A Protein disulfide-isome 99.3 2.9E-12 9.8E-17 126.9 7.6 95 617-712 21-120 (241)
278 2fgx_A Putative thioredoxin; N 99.3 2.1E-12 7.3E-17 107.9 5.3 77 630-710 30-107 (107)
279 3k9i_A BH0479 protein; putativ 99.3 3.2E-12 1.1E-16 110.9 6.7 95 446-552 2-99 (117)
280 1ttz_A Conserved hypothetical 99.3 1.9E-12 6.4E-17 104.6 4.6 73 631-712 2-75 (87)
281 4b4t_Q 26S proteasome regulato 99.3 3.4E-11 1.2E-15 130.1 14.8 204 355-578 8-246 (434)
282 3ed3_A Protein disulfide-isome 99.3 1E-11 3.5E-16 126.4 9.4 96 617-712 23-140 (298)
283 2lst_A Thioredoxin; structural 98.9 5.6E-13 1.9E-17 118.2 0.0 93 620-712 11-114 (130)
284 3idv_A Protein disulfide-isome 99.2 8.1E-12 2.8E-16 123.6 8.2 97 616-713 135-236 (241)
285 1wao_1 Serine/threonine protei 99.2 1.5E-11 5E-16 134.6 10.9 110 485-594 11-120 (477)
286 2kuc_A Putative disulphide-iso 99.2 5.9E-12 2E-16 111.5 5.5 86 627-712 26-119 (130)
287 3f9u_A Putative exported cytoc 99.2 6E-12 2.1E-16 117.5 5.6 85 626-712 45-164 (172)
288 2r2j_A Thioredoxin domain-cont 99.2 8.8E-12 3E-16 132.2 7.2 94 619-712 13-115 (382)
289 1sji_A Calsequestrin 2, calseq 99.2 2.5E-11 8.4E-16 127.2 10.5 94 617-712 17-120 (350)
290 2kat_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 99.7 13.6 101 497-597 2-104 (115)
291 3q6o_A Sulfhydryl oxidase 1; p 99.2 1.5E-11 5.3E-16 121.8 8.3 100 612-712 14-125 (244)
292 3f8u_A Protein disulfide-isome 99.2 1.5E-11 5.2E-16 135.0 8.6 95 618-712 8-107 (481)
293 2l6j_A TPR repeat-containing p 99.2 1.9E-11 6.5E-16 104.3 6.8 96 241-336 3-104 (111)
294 3kp8_A Vkorc1/thioredoxin doma 99.2 1.1E-11 3.6E-16 105.0 4.9 74 629-710 13-91 (106)
295 1lu4_A Soluble secreted antige 99.2 4.3E-11 1.5E-15 106.6 8.8 85 627-712 23-134 (136)
296 1sen_A Thioredoxin-like protei 99.2 3.6E-12 1.2E-16 117.7 1.6 94 619-712 37-146 (164)
297 3ro3_A PINS homolog, G-protein 99.2 7.3E-11 2.5E-15 107.6 10.1 146 387-546 10-161 (164)
298 2ju5_A Thioredoxin disulfide i 99.2 2.2E-11 7.7E-16 111.1 6.5 86 626-712 45-150 (154)
299 2ywm_A Glutaredoxin-like prote 99.2 3.7E-11 1.3E-15 117.8 8.5 91 619-712 126-218 (229)
300 2b5e_A Protein disulfide-isome 99.2 2.6E-11 8.9E-16 133.8 8.1 96 617-712 20-120 (504)
301 3ph9_A Anterior gradient prote 99.2 5.5E-12 1.9E-16 113.6 1.8 81 620-700 36-120 (151)
302 1ilo_A Conserved hypothetical 99.2 4.1E-11 1.4E-15 95.1 6.5 72 631-709 2-76 (77)
303 2l6j_A TPR repeat-containing p 99.1 2E-11 7E-16 104.1 4.7 91 483-573 7-103 (111)
304 1a8l_A Protein disulfide oxido 99.1 6.1E-11 2.1E-15 116.0 8.3 95 618-712 9-111 (226)
305 3erw_A Sporulation thiol-disul 99.1 7.4E-11 2.5E-15 106.3 8.3 84 627-710 33-145 (145)
306 3us3_A Calsequestrin-1; calciu 99.1 3.8E-11 1.3E-15 126.3 7.3 95 617-712 19-122 (367)
307 2qc7_A ERP31, ERP28, endoplasm 99.1 7.2E-11 2.5E-15 114.9 8.3 91 618-712 12-117 (240)
308 2b5x_A YKUV protein, TRXY; thi 99.1 9.5E-11 3.2E-15 106.0 8.4 86 627-712 28-143 (148)
309 1na3_A Designed protein CTPR2; 99.1 5.4E-10 1.8E-14 91.3 12.0 85 240-324 7-91 (91)
310 1zzo_A RV1677; thioredoxin fol 99.1 1.3E-10 4.5E-15 103.3 8.9 85 627-712 24-133 (136)
311 2c0g_A ERP29 homolog, windbeut 99.1 9.1E-11 3.1E-15 114.6 8.3 91 617-712 22-130 (248)
312 2hls_A Protein disulfide oxido 99.1 1E-10 3.4E-15 115.4 8.6 81 628-712 138-224 (243)
313 2kat_A Uncharacterized protein 99.1 3.5E-10 1.2E-14 97.4 11.1 100 451-562 2-103 (115)
314 2f9s_A Thiol-disulfide oxidore 99.1 1.4E-10 4.8E-15 105.5 7.9 85 628-712 26-136 (151)
315 3raz_A Thioredoxin-related pro 99.1 1.6E-10 5.5E-15 105.1 7.7 86 627-712 23-138 (151)
316 3ia1_A THIO-disulfide isomeras 99.1 1.3E-10 4.5E-15 106.0 7.1 84 629-713 31-143 (154)
317 2uy1_A Cleavage stimulation fa 99.1 1.4E-07 4.8E-12 103.2 32.2 309 241-576 46-412 (493)
318 2lja_A Putative thiol-disulfid 99.1 2.8E-10 9.6E-15 103.6 8.7 86 628-713 30-142 (152)
319 3t58_A Sulfhydryl oxidase 1; o 99.1 1.4E-10 4.9E-15 126.4 7.9 99 613-712 15-125 (519)
320 3eyt_A Uncharacterized protein 99.1 3.5E-10 1.2E-14 103.7 9.2 85 628-712 28-150 (158)
321 2h30_A Thioredoxin, peptide me 99.1 1.1E-10 3.6E-15 107.9 5.6 86 627-712 37-154 (164)
322 3apo_A DNAJ homolog subfamily 99.1 1.5E-10 5E-15 135.0 8.1 98 615-712 120-219 (780)
323 3lor_A Thiol-disulfide isomera 99.1 3.5E-10 1.2E-14 103.9 9.1 85 628-712 30-153 (160)
324 3ira_A Conserved protein; meth 99.0 6.7E-11 2.3E-15 108.7 3.2 81 618-698 29-122 (173)
325 3or5_A Thiol:disulfide interch 99.0 3.3E-10 1.1E-14 104.6 7.8 86 627-712 33-149 (165)
326 3hcz_A Possible thiol-disulfid 99.0 2.9E-10 1E-14 102.8 7.2 85 627-711 30-143 (148)
327 2kc7_A BFR218_protein; tetratr 99.0 3.9E-10 1.3E-14 94.0 7.4 89 485-581 5-94 (99)
328 4evm_A Thioredoxin family prot 99.0 5.2E-10 1.8E-14 99.5 8.6 87 627-713 21-138 (138)
329 3n71_A Histone lysine methyltr 99.0 1.9E-09 6.5E-14 117.1 14.7 139 431-578 306-465 (490)
330 3ma5_A Tetratricopeptide repea 99.0 1.7E-09 5.9E-14 90.5 11.2 84 509-592 2-87 (100)
331 3qcp_A QSOX from trypanosoma b 99.0 1.7E-10 5.7E-15 122.3 5.7 83 617-699 29-124 (470)
332 1na3_A Designed protein CTPR2; 99.0 2.9E-09 9.9E-14 86.8 12.0 82 513-594 8-89 (91)
333 2lrn_A Thiol:disulfide interch 99.0 5.5E-10 1.9E-14 101.7 7.4 83 628-712 29-139 (152)
334 3gl3_A Putative thiol:disulfid 99.0 6.7E-10 2.3E-14 101.0 8.0 85 628-712 28-140 (152)
335 2b1k_A Thiol:disulfide interch 99.0 4.2E-10 1.4E-14 104.4 6.6 84 627-712 50-158 (168)
336 3f8u_A Protein disulfide-isome 99.0 5.1E-10 1.7E-14 122.7 8.4 96 617-713 358-460 (481)
337 3fkf_A Thiol-disulfide oxidore 99.0 8.5E-10 2.9E-14 99.7 8.2 84 627-712 32-144 (148)
338 3uem_A Protein disulfide-isome 99.0 7E-10 2.4E-14 116.8 8.6 93 619-713 257-356 (361)
339 1kng_A Thiol:disulfide interch 99.0 8.7E-10 3E-14 100.7 7.8 84 628-712 42-150 (156)
340 1wjk_A C330018D20RIK protein; 99.0 3.8E-10 1.3E-14 94.3 4.8 78 628-712 15-94 (100)
341 1klx_A Cysteine rich protein B 99.0 1.3E-08 4.3E-13 90.8 15.0 119 448-588 9-135 (138)
342 3eur_A Uncharacterized protein 99.0 1.1E-09 3.7E-14 98.4 7.7 82 628-711 31-142 (142)
343 3hdc_A Thioredoxin family prot 98.9 1.3E-09 4.5E-14 99.8 8.4 84 628-711 41-149 (158)
344 3ma5_A Tetratricopeptide repea 98.9 3.2E-09 1.1E-13 88.8 10.0 86 237-322 2-89 (100)
345 2b5e_A Protein disulfide-isome 98.9 5.8E-10 2E-14 123.0 7.0 93 619-713 366-466 (504)
346 2l5o_A Putative thioredoxin; s 98.9 1.2E-09 3.9E-14 99.5 7.4 86 627-712 27-139 (153)
347 3ha9_A Uncharacterized thiored 98.9 1.7E-09 5.8E-14 99.9 8.6 85 627-712 36-162 (165)
348 3kh7_A Thiol:disulfide interch 98.9 1.6E-09 5.6E-14 101.1 7.7 83 628-712 58-165 (176)
349 3kcm_A Thioredoxin family prot 98.9 2E-09 6.9E-14 98.0 7.7 86 627-712 27-141 (154)
350 3fw2_A Thiol-disulfide oxidore 98.9 2.5E-09 8.5E-14 97.0 8.2 83 628-712 33-146 (150)
351 2ywm_A Glutaredoxin-like prote 98.9 1.4E-09 4.8E-14 106.5 6.6 77 636-712 33-113 (229)
352 3lwa_A Secreted thiol-disulfid 98.9 1.4E-09 4.9E-14 102.3 6.4 85 628-712 59-179 (183)
353 2kc7_A BFR218_protein; tetratr 98.9 6.4E-09 2.2E-13 86.5 9.6 85 245-337 3-88 (99)
354 3ewl_A Uncharacterized conserv 98.9 2.2E-09 7.5E-14 96.3 7.0 83 628-712 27-139 (142)
355 4fo5_A Thioredoxin-like protei 98.9 2.8E-09 9.6E-14 95.8 7.3 82 628-711 32-142 (143)
356 1pc2_A Mitochondria fission pr 98.9 1.6E-08 5.4E-13 89.5 11.8 103 495-597 13-120 (152)
357 2lrt_A Uncharacterized protein 98.9 2E-09 7E-14 97.8 6.2 80 628-707 35-141 (152)
358 3ly7_A Transcriptional activat 98.9 4.5E-08 1.5E-12 100.1 16.6 135 434-582 196-344 (372)
359 3apo_A DNAJ homolog subfamily 98.9 1.5E-09 5E-14 126.5 6.3 94 619-712 665-765 (780)
360 2e7p_A Glutaredoxin; thioredox 98.8 7.2E-10 2.5E-14 95.7 1.4 87 620-713 12-107 (116)
361 2cvb_A Probable thiol-disulfid 98.8 5.3E-09 1.8E-13 98.9 7.6 85 628-712 33-157 (188)
362 3n71_A Histone lysine methyltr 98.8 1.2E-08 4.2E-13 110.7 11.4 135 244-414 311-463 (490)
363 2hyx_A Protein DIPZ; thioredox 98.8 4.6E-09 1.6E-13 108.5 7.5 85 628-712 82-197 (352)
364 1hyu_A AHPF, alkyl hydroperoxi 98.8 6.2E-09 2.1E-13 114.9 8.8 81 628-712 117-198 (521)
365 2ywi_A Hypothetical conserved 98.8 3.5E-09 1.2E-13 100.9 5.6 83 630-712 48-172 (196)
366 1klx_A Cysteine rich protein B 98.8 4.3E-08 1.5E-12 87.3 12.3 120 400-555 9-136 (138)
367 2k8s_A Thioredoxin; dimer, str 98.8 1.2E-09 4E-14 87.2 1.6 72 631-706 3-78 (80)
368 3s9f_A Tryparedoxin; thioredox 98.8 4.3E-09 1.5E-13 97.1 5.7 72 628-699 48-148 (165)
369 2hls_A Protein disulfide oxido 98.8 6.7E-09 2.3E-13 102.2 7.4 95 614-711 10-114 (243)
370 3kp9_A Vkorc1/thioredoxin doma 98.8 1.2E-09 3.9E-14 108.8 1.5 72 631-710 200-276 (291)
371 2ls5_A Uncharacterized protein 98.3 7.2E-10 2.5E-14 101.7 0.0 85 628-712 33-146 (159)
372 2rli_A SCO2 protein homolog, m 98.8 1.9E-08 6.3E-13 93.4 8.9 85 628-712 26-162 (171)
373 1o8x_A Tryparedoxin, TRYX, TXN 98.7 4.8E-09 1.6E-13 94.6 4.5 72 628-699 28-128 (146)
374 3u64_A Protein TP_0956; tetrat 98.7 1.9E-07 6.5E-12 91.4 15.8 87 495-581 178-273 (301)
375 1i5g_A Tryparedoxin II; electr 98.7 5.2E-09 1.8E-13 94.1 4.6 71 628-698 28-127 (144)
376 1ego_A Glutaredoxin; electron 98.7 6.8E-09 2.3E-13 83.8 4.8 74 631-711 2-81 (85)
377 2ggt_A SCO1 protein homolog, m 98.7 3E-08 1E-12 91.2 9.0 85 628-712 23-159 (164)
378 3bee_A Putative YFRE protein; 98.7 9.4E-08 3.2E-12 78.3 10.5 74 510-583 2-78 (93)
379 1jfu_A Thiol:disulfide interch 98.7 2.4E-08 8.1E-13 94.1 8.0 85 628-712 60-178 (186)
380 1o73_A Tryparedoxin; electron 98.7 9.5E-09 3.3E-13 92.3 4.8 71 628-698 28-127 (144)
381 3u5r_E Uncharacterized protein 98.7 1.7E-08 5.8E-13 97.7 6.8 83 630-712 61-185 (218)
382 3u64_A Protein TP_0956; tetrat 98.7 5E-07 1.7E-11 88.5 16.6 86 449-546 178-272 (301)
383 2k6v_A Putative cytochrome C o 98.7 2.8E-08 9.7E-13 92.2 7.2 85 628-712 35-171 (172)
384 3bee_A Putative YFRE protein; 98.7 1.8E-07 6E-12 76.6 10.9 72 238-309 2-76 (93)
385 2lus_A Thioredoxion; CR-Trp16, 98.1 2.8E-09 9.7E-14 95.7 0.0 71 630-700 28-128 (143)
386 3ly7_A Transcriptional activat 98.6 4.7E-07 1.6E-11 92.5 16.2 131 391-549 201-345 (372)
387 1we0_A Alkyl hydroperoxide red 98.6 6.4E-08 2.2E-12 91.2 7.8 85 628-712 31-155 (187)
388 3drn_A Peroxiredoxin, bacterio 98.6 5E-08 1.7E-12 89.5 6.7 82 628-709 28-141 (161)
389 2v5f_A Prolyl 4-hydroxylase su 98.6 6.5E-07 2.2E-11 75.2 12.9 84 513-596 4-94 (104)
390 2dlx_A UBX domain-containing p 98.6 3.8E-08 1.3E-12 88.5 5.3 89 622-712 36-134 (153)
391 3cmi_A Peroxiredoxin HYR1; thi 98.6 6.3E-08 2.2E-12 89.8 7.0 84 628-712 32-166 (171)
392 3qww_A SET and MYND domain-con 98.6 3.9E-07 1.3E-11 97.2 13.4 103 487-589 305-428 (433)
393 2bmx_A Alkyl hydroperoxidase C 98.6 7.4E-08 2.5E-12 91.5 7.0 85 628-712 45-168 (195)
394 1zof_A Alkyl hydroperoxide-red 98.6 1.1E-07 3.8E-12 90.5 8.2 85 628-712 33-159 (198)
395 2vup_A Glutathione peroxidase- 98.5 8.8E-08 3E-12 90.5 6.9 85 628-712 48-183 (190)
396 1pc2_A Mitochondria fission pr 98.5 5.9E-07 2E-11 79.5 11.5 98 449-558 13-115 (152)
397 2v5f_A Prolyl 4-hydroxylase su 98.5 7.7E-07 2.6E-11 74.7 11.5 77 241-317 4-87 (104)
398 3dwv_A Glutathione peroxidase- 98.5 2.9E-07 9.9E-12 86.7 9.7 85 628-712 46-181 (187)
399 2v1m_A Glutathione peroxidase; 98.5 1.1E-07 3.9E-12 87.7 6.4 85 628-712 31-165 (169)
400 3qwp_A SET and MYND domain-con 98.5 9.9E-07 3.4E-11 94.3 14.4 104 487-590 294-418 (429)
401 1xvw_A Hypothetical protein RV 98.5 1.8E-07 6.1E-12 85.6 7.5 83 630-712 38-158 (160)
402 3gyk_A 27KDA outer membrane pr 98.5 1.3E-07 4.5E-12 88.0 6.3 80 628-712 22-171 (175)
403 1r7h_A NRDH-redoxin; thioredox 98.5 1.3E-07 4.5E-12 74.0 5.4 69 632-710 3-74 (75)
404 4g26_A Pentatricopeptide repea 98.5 1.3E-05 4.4E-10 87.6 23.1 174 358-558 33-220 (501)
405 1h75_A Glutaredoxin-like prote 98.5 5.4E-08 1.9E-12 77.6 3.1 72 632-713 3-77 (81)
406 2p31_A CL683, glutathione pero 98.5 1.1E-07 3.8E-12 89.0 5.5 85 628-712 49-179 (181)
407 4g26_A Pentatricopeptide repea 98.5 8.9E-06 3E-10 88.9 21.3 166 244-416 28-205 (501)
408 2f8a_A Glutathione peroxidase 98.4 2.5E-07 8.4E-12 88.6 7.0 85 628-712 47-205 (208)
409 2p5q_A Glutathione peroxidase 98.4 1.7E-07 5.7E-12 86.7 5.3 85 628-712 32-166 (170)
410 3qww_A SET and MYND domain-con 98.4 2.1E-06 7.3E-11 91.5 14.5 99 444-551 308-424 (433)
411 1xvq_A Thiol peroxidase; thior 98.4 5.8E-07 2E-11 83.6 8.8 83 628-711 44-162 (175)
412 2h01_A 2-Cys peroxiredoxin; th 98.4 5.2E-07 1.8E-11 85.3 8.4 85 628-712 31-157 (192)
413 2obi_A PHGPX, GPX-4, phospholi 98.4 2.4E-07 8.1E-12 86.9 5.5 85 628-712 47-182 (183)
414 3qwp_A SET and MYND domain-con 98.4 1.7E-06 5.8E-11 92.4 12.8 113 439-560 292-425 (429)
415 1zye_A Thioredoxin-dependent p 98.4 5.6E-07 1.9E-11 87.0 8.1 85 628-712 56-183 (220)
416 1kte_A Thioltransferase; redox 98.4 1.7E-07 5.7E-12 79.0 3.7 88 620-713 4-102 (105)
417 3uem_A Protein disulfide-isome 98.4 7.2E-07 2.5E-11 93.6 9.2 94 619-712 125-228 (361)
418 1uul_A Tryparedoxin peroxidase 98.4 3.7E-07 1.3E-11 87.1 6.3 85 628-712 36-163 (202)
419 2i81_A 2-Cys peroxiredoxin; st 98.3 6.1E-07 2.1E-11 86.2 7.3 85 628-712 52-178 (213)
420 1nzn_A CGI-135 protein, fissio 98.3 4.2E-06 1.5E-10 71.1 11.3 104 494-597 15-123 (126)
421 2jsy_A Probable thiol peroxida 98.3 1.2E-06 4E-11 80.7 8.6 85 628-712 44-165 (167)
422 1eej_A Thiol:disulfide interch 98.3 3.2E-07 1.1E-11 88.5 4.6 79 628-712 86-209 (216)
423 1qmv_A Human thioredoxin perox 98.3 8.2E-07 2.8E-11 84.3 7.3 85 628-712 34-161 (197)
424 3kij_A Probable glutathione pe 98.3 4.6E-07 1.6E-11 84.7 5.1 84 628-711 38-167 (180)
425 2hze_A Glutaredoxin-1; thiored 98.3 1.8E-07 6.2E-12 80.1 1.8 88 619-712 10-108 (114)
426 2b7k_A SCO1 protein; metalloch 98.3 9.1E-07 3.1E-11 84.2 6.8 84 628-711 41-176 (200)
427 2gs3_A PHGPX, GPX-4, phospholi 98.2 7.1E-07 2.4E-11 83.8 5.2 85 628-712 49-184 (185)
428 1t3b_A Thiol:disulfide interch 98.2 5.5E-07 1.9E-11 86.4 4.0 80 628-713 86-210 (211)
429 1xzo_A BSSCO, hypothetical pro 98.2 1.8E-06 6E-11 80.1 7.3 85 628-712 33-170 (174)
430 2cq9_A GLRX2 protein, glutared 98.2 3.5E-07 1.2E-11 80.2 1.9 86 619-713 18-114 (130)
431 3ztl_A Thioredoxin peroxidase; 98.2 2.7E-06 9.2E-11 82.3 7.7 84 628-711 69-195 (222)
432 2ht9_A Glutaredoxin-2; thiored 98.1 6.5E-07 2.2E-11 79.9 1.6 86 619-713 40-136 (146)
433 3gkn_A Bacterioferritin comigr 98.1 7.1E-06 2.4E-10 75.1 7.7 85 628-712 35-160 (163)
434 2lqo_A Putative glutaredoxin R 98.1 5.7E-06 2E-10 67.0 6.1 75 630-713 4-83 (92)
435 2c0d_A Thioredoxin peroxidase 98.1 7.8E-06 2.7E-10 78.8 8.1 85 628-712 56-182 (221)
436 2a4v_A Peroxiredoxin DOT5; yea 98.0 6.4E-06 2.2E-10 75.0 6.9 69 630-700 37-136 (159)
437 4g2e_A Peroxiredoxin; redox pr 98.0 5.4E-06 1.8E-10 75.4 6.3 85 628-712 30-156 (157)
438 1v58_A Thiol:disulfide interch 98.0 5.4E-06 1.9E-10 81.2 6.2 83 628-712 97-231 (241)
439 3ic4_A Glutaredoxin (GRX-1); s 98.0 4.1E-06 1.4E-10 68.4 4.1 70 631-710 13-91 (92)
440 3h93_A Thiol:disulfide interch 98.0 4.7E-06 1.6E-10 78.6 4.9 83 628-712 25-182 (192)
441 1nzn_A CGI-135 protein, fissio 98.0 0.00013 4.5E-09 62.0 12.8 99 448-558 15-118 (126)
442 3a2v_A Probable peroxiredoxin; 97.9 5.6E-06 1.9E-10 80.8 4.9 83 630-712 36-160 (249)
443 2pn8_A Peroxiredoxin-4; thiore 97.9 1.5E-05 5.2E-10 76.3 7.3 85 628-712 48-175 (211)
444 2i3y_A Epididymal secretory gl 97.9 3E-05 1E-09 74.2 9.2 84 628-712 56-209 (215)
445 3hd5_A Thiol:disulfide interch 97.9 9.4E-06 3.2E-10 76.8 5.5 41 628-668 25-66 (195)
446 1q98_A Thiol peroxidase, TPX; 97.9 2.6E-05 8.9E-10 71.4 8.2 73 628-700 43-149 (165)
447 3me7_A Putative uncharacterize 97.9 1.7E-05 5.9E-10 73.0 6.9 85 628-712 28-160 (170)
448 4gqc_A Thiol peroxidase, perox 97.9 1.5E-05 5.1E-10 73.0 5.8 86 627-712 32-158 (164)
449 1psq_A Probable thiol peroxida 97.9 3E-05 1E-09 70.8 7.8 84 628-711 42-162 (163)
450 1n8j_A AHPC, alkyl hydroperoxi 97.8 2.9E-05 1E-09 72.7 7.9 85 628-712 30-154 (186)
451 1y8m_A FIS1; mitochondria, unk 97.8 0.00041 1.4E-08 59.8 14.0 99 498-597 24-126 (144)
452 2r37_A Glutathione peroxidase 97.8 3.6E-05 1.2E-09 73.2 8.1 40 628-668 38-79 (207)
453 3ixr_A Bacterioferritin comigr 97.8 3.6E-05 1.2E-09 71.6 7.6 85 628-712 51-176 (179)
454 3o48_A Mitochondria fission 1 97.8 0.00031 1E-08 59.8 12.4 99 498-597 25-127 (134)
455 2l4c_A Endoplasmic reticulum r 97.8 9E-05 3.1E-09 63.8 9.3 95 612-713 23-123 (124)
456 3zrd_A Thiol peroxidase; oxido 97.8 5.3E-05 1.8E-09 71.7 8.5 73 628-700 78-184 (200)
457 3c1r_A Glutaredoxin-1; oxidize 97.8 3.1E-06 1.1E-10 72.6 -0.1 70 620-695 17-94 (118)
458 2yzh_A Probable thiol peroxida 97.8 5.1E-05 1.7E-09 69.9 8.2 84 628-712 47-170 (171)
459 4h7y_A Dual specificity protei 97.8 0.0003 1E-08 61.0 12.0 113 462-587 7-133 (161)
460 3p7x_A Probable thiol peroxida 97.7 4.1E-05 1.4E-09 70.2 6.6 83 628-711 46-165 (166)
461 2klx_A Glutaredoxin; thioredox 97.7 1.9E-05 6.6E-10 63.8 3.3 57 631-694 7-66 (89)
462 2wfc_A Peroxiredoxin 5, PRDX5; 97.7 6.5E-05 2.2E-09 68.8 7.2 72 629-700 32-142 (167)
463 2yan_A Glutaredoxin-3; oxidore 97.7 3.2E-05 1.1E-09 64.7 4.7 68 619-695 8-84 (105)
464 3nzn_A Glutaredoxin; structura 97.7 5.4E-05 1.8E-09 63.1 5.9 71 630-710 22-102 (103)
465 3qpm_A Peroxiredoxin; oxidored 97.7 7.7E-05 2.6E-09 72.8 7.9 85 628-712 77-204 (240)
466 3gv1_A Disulfide interchange p 97.7 2E-05 6.8E-10 70.3 3.2 78 627-712 13-137 (147)
467 1nm3_A Protein HI0572; hybrid, 97.7 8E-05 2.7E-09 72.9 7.9 73 628-700 33-143 (241)
468 3uma_A Hypothetical peroxiredo 97.6 5.8E-05 2E-09 70.3 6.0 82 630-711 59-183 (184)
469 2znm_A Thiol:disulfide interch 97.6 0.00015 5.3E-09 68.2 9.1 40 628-667 22-62 (195)
470 3tjj_A Peroxiredoxin-4; thiore 97.6 0.00016 5.5E-09 71.0 8.5 85 628-712 91-218 (254)
471 1fov_A Glutaredoxin 3, GRX3; a 97.5 7.2E-05 2.5E-09 59.2 4.8 68 632-711 3-74 (82)
472 3ffl_A Anaphase-promoting comp 97.5 0.00039 1.3E-08 61.8 9.6 106 485-591 25-164 (167)
473 3hz8_A Thiol:disulfide interch 97.5 0.00013 4.4E-09 68.6 7.0 40 628-667 24-64 (193)
474 3qmx_A Glutaredoxin A, glutare 97.5 7.8E-05 2.7E-09 61.5 4.4 60 629-695 15-79 (99)
475 3ffl_A Anaphase-promoting comp 97.5 0.00092 3.2E-08 59.4 11.2 95 243-337 21-149 (167)
476 4h7y_A Dual specificity protei 97.5 0.00076 2.6E-08 58.5 10.1 101 237-338 8-122 (161)
477 1tp9_A Peroxiredoxin, PRX D (t 97.5 0.00021 7.2E-09 65.1 7.2 73 628-700 35-146 (162)
478 3mng_A Peroxiredoxin-5, mitoch 97.4 0.00017 5.7E-09 66.4 6.3 82 630-711 46-172 (173)
479 4dvc_A Thiol:disulfide interch 97.4 0.00019 6.4E-09 66.8 6.4 82 629-712 22-180 (184)
480 2khp_A Glutaredoxin; thioredox 97.4 0.0001 3.4E-09 59.9 3.5 58 631-695 7-68 (92)
481 3feu_A Putative lipoprotein; a 97.3 0.00012 4.1E-09 68.3 4.3 82 628-712 22-182 (185)
482 3rhb_A ATGRXC5, glutaredoxin-C 97.3 8.5E-05 2.9E-09 63.1 2.9 68 619-695 10-85 (113)
483 1z6m_A Conserved hypothetical 97.3 0.00023 8E-09 65.7 5.9 79 628-711 27-175 (175)
484 2pwj_A Mitochondrial peroxired 97.3 0.0002 7E-09 65.8 5.1 71 629-700 45-154 (171)
485 1xcc_A 1-Cys peroxiredoxin; un 97.3 0.00027 9.3E-09 67.8 6.0 83 630-712 34-164 (220)
486 4hde_A SCO1/SENC family lipopr 97.3 0.00099 3.4E-08 61.1 9.4 85 628-712 32-168 (170)
487 2rem_A Disulfide oxidoreductas 97.2 0.00044 1.5E-08 64.9 7.0 39 629-667 26-65 (193)
488 3h8q_A Thioredoxin reductase 3 97.2 0.00016 5.4E-09 61.5 3.4 69 618-695 7-82 (114)
489 1prx_A HORF6; peroxiredoxin, h 97.2 0.00061 2.1E-08 65.6 8.0 83 630-712 34-167 (224)
490 3l9v_A Putative thiol-disulfid 97.2 0.00021 7.1E-09 67.0 4.4 40 629-668 15-58 (189)
491 3kae_A CDC27, possible protein 97.2 0.022 7.4E-07 50.1 16.3 177 237-418 28-240 (242)
492 3msz_A Glutaredoxin 1; alpha-b 97.1 0.00023 7.7E-09 57.3 3.0 61 630-695 4-73 (89)
493 3ctg_A Glutaredoxin-2; reduced 97.1 9.6E-05 3.3E-09 64.3 0.7 73 617-695 26-106 (129)
494 2v2g_A Peroxiredoxin 6; oxidor 97.1 0.00072 2.5E-08 65.3 6.9 83 630-712 31-163 (233)
495 3keb_A Probable thiol peroxida 97.1 0.0018 6.1E-08 61.7 9.4 82 628-712 48-174 (224)
496 3o48_A Mitochondria fission 1 97.0 0.0051 1.7E-07 52.3 10.7 80 240-319 38-121 (134)
497 1y8m_A FIS1; mitochondria, unk 97.0 0.0077 2.6E-07 51.9 11.8 82 238-319 35-120 (144)
498 3mkq_A Coatomer beta'-subunit; 97.0 0.038 1.3E-06 63.9 21.8 27 434-460 681-707 (814)
499 4f9z_D Endoplasmic reticulum r 97.0 0.0023 7.7E-08 61.8 9.2 94 619-712 121-223 (227)
500 3txn_A 26S proteasome regulato 97.0 0.3 1E-05 50.5 25.6 123 391-529 104-235 (394)
No 1
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.7e-35 Score=309.92 Aligned_cols=344 Identities=21% Similarity=0.290 Sum_probs=316.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+++.++.+|..++..|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCC---hHHHH--H---HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQAD---PTEVH--R---LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~---~~~~~--~---l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
...|++++|+..|++++...+ ..... . +.....+...+..+...|++++|+..++++++..|. ...++..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 999999999999999998443 22211 1 122344556688999999999999999999999997 46778889
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+.++...|++++|+..++++++.+|.+ ..++..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDN--------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999999999999999999998 789999999999999999999999999999999999988
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+..+........+|.++...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++.+|+++
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 887777777778889999999999999999999999999987 4466799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
.+++.+|.++..+|++++|+++|+++++++|++..+...|..++..+++.+
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998887654
No 2
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.9e-35 Score=321.99 Aligned_cols=357 Identities=20% Similarity=0.288 Sum_probs=325.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
...+|+++..++.+|..++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++..++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHH-----HHHH---HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTE-----VHRL---QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~l---~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
.+|.+|..+|++++|+..|++++....... +..+ .....++.++..+...|++++|+..|+++++..|. ..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 999999999999999999999988433222 2211 12234667788899999999999999999999997 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
.++..++.+|...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+..|++++..+|+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDN--------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777789999999999999999999999999998 889999999999999999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+...+..+..+........+|.++...|++++|+.+|++++++.|+++ .++..+|.++.+.|++++|+..|+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998887777777778889999999999999999999999999984 4889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM 606 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~ 606 (714)
++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..+..+...+++....+++..
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~ 387 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999998888777666654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-36 Score=323.78 Aligned_cols=329 Identities=18% Similarity=0.147 Sum_probs=168.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|+++..+..+|..++..|++++|+.+++++++.+|.++.+|..+|.+|...|++++|+..|+++++++|++..+|..+
T Consensus 28 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 28 QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCC-CChH-HHHHHH-------------------------HHHHHHHHhHHHHHcCCHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQ-ADPT-EVHRLQ-------------------------VVEKHLSKCTDARKVGDWKS 369 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~-~~~~-~~~~l~-------------------------~~~~~~~~a~~~~~~g~~~~ 369 (714)
|.++...|++++|+..|++++.. ++.. ....+. ....+..++.++...|++++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555555441 1110 000000 01223334444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR 449 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 449 (714)
|+..|+++++.+|+. ...+..+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|+
T Consensus 188 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--------------AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--------------HHHHHHHHHHHHHcCC
Confidence 555555555555442 3334445555555555555555555555555544 4445555555555555
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 529 (714)
+++|+..|+++++++|+++.++..+ |.++...|++++|+.+|+++++.+|.+..++..+|.++.+.|+
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHH------------HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence 5555555555555555555544433 5555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+++|+..|+++++++|++..+++.+|.+|.+.|++++|+.+|+++++++|++..++..+..++
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555554443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.4e-35 Score=314.41 Aligned_cols=327 Identities=18% Similarity=0.162 Sum_probs=235.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQV 326 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 326 (714)
.+|..+++.|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|.+..+|..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005108 327 ENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAE 406 (714)
Q Consensus 327 ~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (714)
++|+..|++++...+.. ...+..++..+...|++++|+..|+++++.+|+.. ..+..++.++...|++++|+
T Consensus 84 ~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHccCHHHHH
Confidence 99999999998722111 12355566667777777777777777777777643 44455777777777777777
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH--------
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK-------- 478 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~-------- 478 (714)
.+|+++++.+|.+ ..+|..+|.++...|++++|+..|+++++++|++...+..+..+.
T Consensus 156 ~~~~~al~~~p~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 156 ACYLKAIETQPNF--------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 7777777777776 666777777777777777777777777777777776665552210
Q ss_pred --------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 479 --------------LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 479 --------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
....+..+|.++...|++++|+..|+++++.+|+++.++.++|.++.+.|++++|++.|+++++++
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 001122335556666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
|++..++..+|.++...|++++|+..|+++++++|++..++..+..++...
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666655555555554433
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.1e-31 Score=300.56 Aligned_cols=330 Identities=19% Similarity=0.197 Sum_probs=291.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.++.+|..++..|+|++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC-CCChHH-------------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQ-QADPTE------------------------------------------------------- 344 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~-~~~~~~------------------------------------------------------- 344 (714)
..+|++++|+..|+ ++. .++...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999885 332 111000
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHhHHHHHcCCHHHH
Q 005108 345 ------------------------------------------------------VHRLQVVEKHLSKCTDARKVGDWKSA 370 (714)
Q Consensus 345 ------------------------------------------------------~~~l~~~~~~~~~a~~~~~~g~~~~A 370 (714)
.........+..++..+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 00011123466677889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcH
Q 005108 371 LREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450 (714)
Q Consensus 371 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 450 (714)
+..|+++++.+|+ ...+..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.++...|++
T Consensus 263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--------------PPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--------------HHHHHHHHHHHHhcCCH
Confidence 9999999999998 7778889999999999999999999999999998 78899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 530 (714)
++|+..|+++++.+|++...+..+ |.++...|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQL------------ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 999999999999999999888766 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 531 ERSVEDSNQALLIQPNYT------KALLRRAASNSKL----------EKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 531 ~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+..|++++++.|++. ..++.+|.++..+ |++++|+.+|+++++.+|++..++..+..++..
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999876654 3356778888888 999999999999999999999999999888877
Q ss_pred hhhhc
Q 005108 595 LKKSR 599 (714)
Q Consensus 595 l~~~~ 599 (714)
.++..
T Consensus 475 ~g~~~ 479 (537)
T 3fp2_A 475 MEKID 479 (537)
T ss_dssp TTCHH
T ss_pred hccHH
Confidence 76543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-30 Score=295.15 Aligned_cols=324 Identities=12% Similarity=0.011 Sum_probs=262.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------------------------------
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAA------------------------------------ 284 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~------------------------------------ 284 (714)
++..++.+|..|.+.|++++|+.+|+++++.+|++..++..++.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 48999999999999999999999999999999987666554432
Q ss_pred --HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHH------------
Q 005108 285 --ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRL------------ 348 (714)
Q Consensus 285 --~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l------------ 348 (714)
+|.+.|++++|++.|+++++. |.+..+|..++.+|.+.|++++|+..|++++. +.+...+..+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 222344555555555555544 44455555555555555555555555555543 1111110000
Q ss_pred -------------HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccC
Q 005108 349 -------------QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKI 415 (714)
Q Consensus 349 -------------~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (714)
.....+..++..+.+.|++++|++.|+++++.+|. ....+..++.+|.+.|++++|++.|+++++.
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01234566778889999999999999999998887 4566777999999999999999999999999
Q ss_pred CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 416 ~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
.|.+ ..+|..++.+|...|++++|+++|+++++..|++...+..+ |.++.+.|+
T Consensus 437 ~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~ 490 (597)
T 2xpi_A 437 FQGT--------------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL------------GVVAFNKSD 490 (597)
T ss_dssp TTTC--------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHTTC
T ss_pred Cccc--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCC
Confidence 8887 67889999999999999999999999999999998887766 999999999
Q ss_pred HHHHHHHHHHhhcc------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 496 FTEACQAYGEGLRF------DPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 496 ~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+++|+++|+++++. +|++ ..+|..+|.+|.+.|++++|++.|+++++++|++..++..++.+|...|++++|+
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999988 6665 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++|+++++++|++..++..|..++
T Consensus 571 ~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 571 THLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999998887654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-31 Score=293.69 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=192.9
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
....++.++..+...|++++|+..|+++++.+|. ...+..++.++...|++++|+..|+++++.+|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 303 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---------- 303 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------
Confidence 3456777888999999999999999999999998 8888889999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
..++..+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|+.+|+++++.
T Consensus 304 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 304 ----SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL------------ACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp ----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH------------HHHTTTTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999998887766 88888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK------ALLRRAASNSK---LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~ 580 (714)
.|.+..++..+|.++...|++++|+..|++++++.|++.. +++.+|.++.. .|++++|+.+|+++++++|+
T Consensus 368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888888888888888888888888888777644 78888888888 88888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhhhc
Q 005108 581 DNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 581 ~~~~~~~L~~~~~~l~~~~ 599 (714)
+..++..+..++...++..
T Consensus 448 ~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhcCHH
Confidence 8888888877776665443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.4e-30 Score=284.77 Aligned_cols=328 Identities=17% Similarity=0.113 Sum_probs=279.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH---HH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW---RA 312 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a 312 (714)
...|+++..++.+|.+++..|++++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++. .+
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 313 HQRL------------GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 313 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
+..+ |.++...|++++|+.+|++++...... ...+..++.++...|++++|+..|+++++.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6665 666999999999999999998622211 234667788899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 005108 381 GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKA 460 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 460 (714)
+|.. ...+..+|.+|...|++++|+..|+++++.+|++.. .......+.....+..+|.++...|++++|+.+|+++
T Consensus 207 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 207 KNDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 677788999999999999999999999999998711 0001111112222344599999999999999999999
Q ss_pred hccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 461 l~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
+++.|++...+... +..+|.++.+.|++++|+.+|+++++++|++..+|..+|.+|..+|++++|+..|+++
T Consensus 284 l~~~p~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 284 MKTEPSIAEYTVRS--------KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHCCSSHHHHHHH--------HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999986633211 2245999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHH------------HHHhc-----cHHHHHHHHHH-HHHhCCCC
Q 005108 541 LLIQPNYTKALLRRAAS------------NSKLE-----KWADAVRDFEV-LRRELPDD 581 (714)
Q Consensus 541 l~~~p~~~~~~~~la~~------------~~~~g-----~~~eA~~~~~~-al~~~p~~ 581 (714)
++++|++..++..++.+ |..+| +.+++.+.|++ +++.+|++
T Consensus 356 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 356 QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999955 44444 56778888986 88888864
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=272.26 Aligned_cols=289 Identities=15% Similarity=0.098 Sum_probs=262.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.++++..+..+|..++..|++++|+.+|+++++.+|.+..++..++.++..+|++++|+..++++++.+|++..++..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 318 SLLVRLG-QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 318 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
.++...| ++++|+.+|+++ ++.+|.. ...+..+|.++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a-----------------------------------------~~~~~~~-~~~~~~l~~~~ 135 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKA-----------------------------------------TTLEKTY-GPAWIAYGHSF 135 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHH-----------------------------------------HTTCTTC-THHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHH-----------------------------------------HHhCCcc-HHHHHHHHHHH
Confidence 9999988 888887777554 4445543 34466689999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+..|+++++..|.+ ...+..+|.++...|++++|+.+|+++++.+|++..++..+
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-- 199 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGC--------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV-- 199 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTC--------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH--
T ss_pred HHccCHHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH--
Confidence 99999999999999999999987 56788899999999999999999999999999998888766
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFD---------PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
|.++...|++++|+.+|+++++.. |....++..+|.+|..+|++++|+.+|+++++++|++
T Consensus 200 ----------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 200 ----------GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 999999999999999999999875 6678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..++..+|.++..+|++++|+++|+++++++|++..++..+..+...
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887643
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=9.2e-30 Score=284.82 Aligned_cols=328 Identities=13% Similarity=0.113 Sum_probs=286.6
Q ss_pred cchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH--------
Q 005108 228 ANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC-------- 299 (714)
Q Consensus 228 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-------- 299 (714)
...+......+|+++..++.+|.+++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|
T Consensus 45 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 124 (537)
T 3fp2_A 45 IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 334444445789999999999999999999999999999999999999999999999999999988887755
Q ss_pred --------------------------------------------------------------------------------
Q 005108 300 -------------------------------------------------------------------------------- 299 (714)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (714)
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------HHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 300 ---------------------EEAVRLDPNYWR-------AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 300 ---------------------~~al~~~p~~~~-------a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
+++++.+|++.. ++..+|.++...|++++|+..|++++...+..
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 276 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-------- 276 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc--------
Confidence 333445566533 57788899999999999999999998732221
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..+..++.++...|++++|+..|+++++.+|+ ....+..+|.++...|++++|+..|+++++.+|.+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 343 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------------ 343 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------
Confidence 34666788899999999999999999999997 46677889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.+|+++++.+|++..++..+ |.++...|++++|+.+|+++++..|
T Consensus 344 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 344 --VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF------------AEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp --SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 67899999999999999999999999999999999988876 9999999999999999999999877
Q ss_pred CCH------HHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 512 SNS------VLYCNRAACWFKL----------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 512 ~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
++. ..++.+|.++... |++++|+..|+++++.+|++..+++.+|.+|..+|++++|+++|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 653 3466778999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 005108 576 RELPDDNEIAESLFH 590 (714)
Q Consensus 576 ~~~p~~~~~~~~L~~ 590 (714)
+++|++.+....+..
T Consensus 490 ~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 490 ILARTMDEKLQATTF 504 (537)
T ss_dssp HHC--CHHHHHHHHH
T ss_pred HhCCCcHHHHHHHhH
Confidence 999999988765543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=286.23 Aligned_cols=326 Identities=16% Similarity=0.137 Sum_probs=290.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.++.+|..++..|+|++|+.+|+++++.+| ++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHH----------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRL---------------------------------------------------- 348 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l---------------------------------------------------- 348 (714)
..+|++++|+..|++++...+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998763321110000
Q ss_pred --------------------HHHHHHHHHhHHHHH---cCCHHHHHHHHHHHHH-----c--CCCC------CHHHHHHH
Q 005108 349 --------------------QVVEKHLSKCTDARK---VGDWKSALREGDAAIA-----A--GADF------SPQLSMCR 392 (714)
Q Consensus 349 --------------------~~~~~~~~~a~~~~~---~g~~~~Al~~~~~al~-----~--~p~~------~~~~~~~l 392 (714)
.....++..+..+.. .|++++|+..|+++++ . +|+. ....+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 003344555555554 8999999999999999 5 4433 24667789
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..|++++..+|.+..++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 308 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR---------------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH
Confidence 99999999999999999999998876 357899999999999999999999999999999998887
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
.+ |.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++..+++
T Consensus 309 ~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 376 (514)
T 2gw1_A 309 HR------------GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376 (514)
T ss_dssp HH------------HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HH------------HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence 66 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNE------IAESLFHAQVS 594 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~L~~~~~~ 594 (714)
.+|.++...|++++|+.+|+++++..|++.. ++..+..++..
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998865 77777777665
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.1e-29 Score=286.09 Aligned_cols=327 Identities=12% Similarity=0.066 Sum_probs=247.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA----------------PRNAAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
.+.++..++.++..|.+.|++++|+..|+++.... +.+..+|+.+|.+|.+.|++++|++.|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46778888888888888888888888888632222 22378888889999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHHhhcCC-CCh
Q 005108 302 AVRLDPNYWRAHQRLGS--------------------------------------LLVRLGQVENARRHLCLSGQQ-ADP 342 (714)
Q Consensus 302 al~~~p~~~~a~~~la~--------------------------------------~~~~~g~~~~A~~~~~~al~~-~~~ 342 (714)
+++.+|++..++..++. .|.+.|++++|+..|++++.. .+.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 98888888887776644 334568888888888888763 222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------------CHHHH
Q 005108 343 TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---------------------------------SPQLS 389 (714)
Q Consensus 343 ~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---------------------------------~~~~~ 389 (714)
..+.. ++..+.+.|++++|+..|+++++.+|+. ....+
T Consensus 306 ~~~~~---------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 306 DLLLC---------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp HHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHH---------HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 22221 2233444555555555555555444432 34455
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..++.+|.+.|++++|+++|+++++.+|.+ ..+|..++.+|...|++++|++.|+++++..|++..
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQF--------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 556677777777777777777777666666 566777777777777777777777777777777766
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------ 543 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 543 (714)
.+..+ |.+|.+.|++++|+++|+++++..|.++.+|..+|.+|.+.|++++|++.|++++++
T Consensus 443 ~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 443 PYLFL------------GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 66654 888999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 544 QPNY-TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 544 ~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+|++ ..++..++.+|.+.|++++|++.|+++++++|++..++..+..++...++.+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 6664 7889999999999999999999999999999999999998888887776654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.2e-28 Score=259.93 Aligned_cols=314 Identities=17% Similarity=0.089 Sum_probs=272.9
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---Cc
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP---NY 309 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~ 309 (714)
......|+++..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+| ++
T Consensus 28 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 28 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 333468899999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHH------------HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Q 005108 310 WRAHQRL------------GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAA 377 (714)
Q Consensus 310 ~~a~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~a 377 (714)
..++..+ |.++...|++++|+..|++++...+.. ...+..++.++...|++++|+..++++
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877 799999999999999999998722211 245677888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 378 IAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 378 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
++..|.. ...+..+|.++...|++++|+..|+++++.+|.+.. ...+...+........+|.++...|++++|+..|
T Consensus 181 ~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 181 SKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999874 567778999999999999999999999999998721 1111111222233456699999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
+++++..|++...+... +..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|
T Consensus 258 ~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987654321 2245999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 538 NQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
+++++++|++..++..++.++..+++.
T Consensus 330 ~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 330 EAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999988776543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.8e-29 Score=267.94 Aligned_cols=293 Identities=16% Similarity=0.062 Sum_probs=224.4
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 005108 251 ELYRKGCFGEALS-MYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325 (714)
Q Consensus 251 ~~~~~g~~~~Al~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 325 (714)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4555677777877 7777777776653 4577778888888888888888888888777777777888888888888
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---------------
Q 005108 326 VENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM--------------- 390 (714)
Q Consensus 326 ~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~--------------- 390 (714)
+++|+.+|++++...+.. ...+..++.++...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 114 ELLAISALRRCLELKPDN-------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 888877777776522111 1345556666777777777777777777777754332221
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
.++.++ ..|++++|+.+|+++++.+|. + ..++..+|.++...|++++|+.+|++++.++|++.
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSID--------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 255555 889999999999999999888 5 77888999999999999999999999999999988
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY- 547 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 547 (714)
.++..+ |.++...|++++|+.+|+++++++|++..+++.+|.+|.++|++++|+..|++++++.|++
T Consensus 252 ~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 252 LLWNKL------------GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 887765 8889999999999999999999999999999999999999999999999999999988887
Q ss_pred ----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 548 ----------TKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 548 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|..+|.+|..+|++++|...++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 788999999999999999999888877654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=262.15 Aligned_cols=278 Identities=17% Similarity=0.074 Sum_probs=234.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|..+|++++|+.+|++++...+..... +..+ + ....++..++.++...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~-------~------------------~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYL-------VKNK-------K------------------GSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------------------CC
T ss_pred HHccccHHHHHHHHHHHHHhCccchHH-------Hhhh-------c------------------cchHHHHHHHHHHhhh
Confidence 999999999999998876411110000 0000 0 0123344578899999
Q ss_pred CCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 400 HQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
|++++|+.+|+++++.+|. + ..++..+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--- 253 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMID--------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL--- 253 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHhCcCccC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 9999999999999999998 5 77899999999999999999999999999999999888766
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN----------- 546 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------- 546 (714)
|.++...|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|++++++.|+
T Consensus 254 ---------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 254 ---------GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 999999999999999999999999999999999999999999999999999999999877
Q ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 547 -YTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 547 -~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+..+|..++.++..+|+.+.|....++.+
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 35788999999999999999888776543
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=4.5e-28 Score=252.25 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=245.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-VE-ALLK 398 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-a~-~~~~ 398 (714)
...|++++|+..|++++............. ....+.. .. ...+ +. ++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~-~~-~~~~~~~~~~~~ 150 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVN---------------------------LQADVDI-DD-LNVQSEDFFFAA 150 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------------CCTTS
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHH---------------------------hHHHHHH-HH-HHHHHHhHHHHH
Confidence 999999999999988765221111000000 0000000 00 1123 33 5888
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|++++|+.+++++++.+|.+ ..++..+|.++...|++++|+.+++++++.+|++..++..+
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 212 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND--------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL---- 212 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred cccHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH----
Confidence 899999999999999999988 78999999999999999999999999999999999888766
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------------
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------------ 546 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 546 (714)
|.++...|++++|+.+|+++++..|++..++..+|.+|..+|++++|++.|++++++.|+
T Consensus 213 --------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 213 --------GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+..++..++.++..+|++++|...++++++..|
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998877654
No 17
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=1.2e-27 Score=253.69 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=213.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+.|+++.++..+|.++...|++++|+.+|+++++++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 5777888899999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+|.++..+|++++|+..| +++++++|++ ...|..+|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~-----------------------------------------~kal~ldP~~-~~a~~~lg~~ 209 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhCccC-HHHHHHHHHH
Confidence 999998888777776655 5666778874 5667779999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHH-----HHHHHHHhccCCCCHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENA-----VTAAEKAGQIDPRNVE 469 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~ 469 (714)
+..+|++++|+.+|+++++++|.+ ..+|+.+|.++.. .|.+++| +.+|++++.++|++..
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~--------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRN--------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999998 8899999999999 5554777 4778888888888887
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG---------QWERSVEDSN 538 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~ 538 (714)
+|..+ |.++...| ++++|++.++++ +.+|++..++..+|.+|.++| .+++|+++|+
T Consensus 276 a~~~l------------~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 276 AWNYL------------KGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHHHH------------HHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 77765 66677766 577777777776 777777777777777777764 2477777777
Q ss_pred HH-HHhCCCCHHHHHHHHHHHHHh
Q 005108 539 QA-LLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 539 ~a-l~~~p~~~~~~~~la~~~~~~ 561 (714)
++ ++++|.....|..++..+..+
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 77 777777777777777666543
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=261.86 Aligned_cols=321 Identities=12% Similarity=-0.001 Sum_probs=242.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA--------PRNAAFRSNRAAALTGL--GRIGEAVKECEEAVRLD 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~ 306 (714)
..|..+..+.++|.+|+..|++++|+.+|++++++. +..+.++..+|.++... ++|++|+.+|+++++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 467788899999999999999999999999999873 35578899998887765 47999999999999999
Q ss_pred CCcHHHHHHHHHHHHH---cCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 307 PNYWRAHQRLGSLLVR---LGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 307 p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
|+++.++..++.++.. .+++++|+..|++++. +.+......+ ....+..+...+++++|+..+++++..+
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l-----~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL-----ALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH-----HHHHHHCC------CHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999988654 5777899999999987 2222221111 1122333456788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------------
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-------------- 447 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 447 (714)
|.. ...+..+|.+|...|++++|+..|+++++.+|++ ..++..+|.+|...
T Consensus 244 ~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 244 PGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--------------AYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp SSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHHHHHHHHC------C
T ss_pred ccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 984 5667779999999999999999999999999998 77888888877543
Q ss_pred -----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHH
Q 005108 448 -----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCN 519 (714)
Q Consensus 448 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 519 (714)
+.+++|+..|+++++++|.+...+..+ |.++...|++++|+.+|++++++++++. .+++.
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSIL------------ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH------------HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 457899999999999999998888766 9999999999999999999999988764 34666
Q ss_pred HHHH-HHHhCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 520 RAAC-WFKLGQWERSVEDSNQALLIQ------------------------PNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 520 la~~-~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
+|.+ +...|++++|+..|+++++++ |+++.++..+|.+|..+|++++|+++|+++
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7754 457899999999999988764 556678899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 005108 575 RRELPDDNEIAESLF 589 (714)
Q Consensus 575 l~~~p~~~~~~~~L~ 589 (714)
+++.|.++.+...++
T Consensus 457 Le~~~~~p~a~~~~G 471 (472)
T 4g1t_A 457 LESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------
T ss_pred HhcCCCCCcHhhcCC
Confidence 999998888766554
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-26 Score=253.05 Aligned_cols=331 Identities=13% Similarity=-0.015 Sum_probs=262.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL---------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD----- 306 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 306 (714)
.+..+..+|.+++.+|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4677889999999999999999999999986 67778899999999999999999999999998863
Q ss_pred ---CCcHHHHHHHHHHHHHc--CCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 307 ---PNYWRAHQRLGSLLVRL--GQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 307 ---p~~~~a~~~la~~~~~~--g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
+....++..+|.++... +++++|+.+|++++. +.++.....+..+ ...+...+++++|++.|+++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~------~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA------SYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH------HHHHHHSCCCCCTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HHHhcCchHHHHHHHHHHHHhh
Confidence 34578888888887765 479999999999987 3333222211111 1124456888999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALL----KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 455 (714)
++|+. ..++..++..+. ..+++++|+.+|++++..+|.. ..++..+|.+|...|++++|+.
T Consensus 204 l~p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--------------~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 204 LNPDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--------------TDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HCSSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCcc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--------------HHHHHHHHHHHHHcCchHHHHH
Confidence 99985 455555665554 4568899999999999999998 8899999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHhHHHHHHHH-------HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 456 AAEKAGQIDPRNVEVAVLLNNVKLVARAR-------ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 456 ~~~~al~~~p~~~~~~~~l~~l~~~~~~~-------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
.|+++++.+|++..++..+..+....... ..+......+.+++|+..|+++++++|.+..++..+|.+|..+|
T Consensus 269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 99999999999999888764332211111 11222233456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYTK---ALLRRAAS-NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++++|+++|+++++++|++.. +++.+|.+ +..+|++++|+.+|+++++++|++.+....+..+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 999999999999999887653 45666655 46789999999999999999998877655554443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.7e-27 Score=252.84 Aligned_cols=316 Identities=15% Similarity=0.084 Sum_probs=241.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVK-ECEEAVRLDPNY----WRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~ 328 (714)
..+.|+.+...++.+...+|. ++..+|+|++|+. .|++++++.|++ ...++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 444555666666666555543 5566799999999 999999998876 4578999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+..|++++...+.. ...+..++.++...|++++|+..|+++++.+|+ ....+..+|.+|...|++++|+..
T Consensus 83 A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 83 AVLLFEAAVQQDPKH-------MEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp HHHHHHHHHHSCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998743222 245667788899999999999999999999997 466777899999999999999999
Q ss_pred hhccccCCCCCCCchhhh--hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHH
Q 005108 409 LSNIPKIEPSTVSSSQTR--FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~ 484 (714)
|+++++.+|.+....... ..........+..++.++ ..|++++|+.+|+++++.+|+ +..++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l---------- 223 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL---------- 223 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH----------
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH----------
Confidence 999999999872211000 000000011122456666 899999999999999999999 77777765
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.+|.++|++
T Consensus 224 --~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 --GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhhhhcc
Q 005108 565 ADAVRDFEVLRRELPDD-----------NEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~-----------~~~~~~L~~~~~~l~~~~~ 600 (714)
++|+.+|++++++.|++ ..++..+..++..+++.+.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999999999988 8899999999888876554
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.2e-27 Score=243.93 Aligned_cols=265 Identities=15% Similarity=0.032 Sum_probs=238.4
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHH
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 311 (714)
.....+|.+...+..++.+++..|++++|+.+|+++++.+|+++.+++.+|.++...| ++++|+..|+++++++|++..
T Consensus 47 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 126 (330)
T 3hym_B 47 VVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126 (330)
T ss_dssp HHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH
T ss_pred HHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH
Confidence 3344678888899999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
+|..+|.++...|++++|+..|++ +++..|+.. ..+..
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------------------a~~~~~~~~-~~~~~ 164 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFT-----------------------------------------AAQLMKGCH-LPMLY 164 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-----------------------------------------HHHHTTTCS-HHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH-----------------------------------------HHHhccccH-HHHHH
Confidence 999999999988888888777654 445555543 34455
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-------
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID------- 464 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 464 (714)
+|.+|...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.+++++++..
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPED--------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999998 7889999999999999999999999999876
Q ss_pred --CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 465 --PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 465 --p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
|....++..+ |.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+++|+++++
T Consensus 231 ~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 231 TVDKWEPLLNNL------------GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TTTTCCHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred cccHHHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5566677655 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH-HHhccHH
Q 005108 543 IQPNYTKALLRRAASN-SKLEKWA 565 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~-~~~g~~~ 565 (714)
++|++..++..++.++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999998 5566543
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=8.1e-28 Score=255.15 Aligned_cols=260 Identities=13% Similarity=0.022 Sum_probs=236.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCCCChHHH
Q 005108 267 KAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ-VENARRHLCLSGQQADPTEV 345 (714)
Q Consensus 267 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 345 (714)
.++.++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~------------ 155 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI------------ 155 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH------------
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHH------------
Confidence 35667888999999999999999999999999999999999999999999999998885 77776665
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhh
Q 005108 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQT 425 (714)
Q Consensus 346 ~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 425 (714)
+++++++|+ ...+|..+|.++..+|++++|+.+|+++++++|++
T Consensus 156 -----------------------------~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------ 199 (382)
T 2h6f_A 156 -----------------------------TAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------ 199 (382)
T ss_dssp -----------------------------HHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------
T ss_pred -----------------------------HHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------
Confidence 566778887 46777889999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh-CcCHHHH-----
Q 005108 426 RFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK-SERFTEA----- 499 (714)
Q Consensus 426 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~-~g~~~~A----- 499 (714)
..+|+.+|.++..+|++++|+.+|+++++++|++..+|..+ |.++.. .|.+++|
T Consensus 200 --------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l------------g~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 200 --------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR------------YFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp --------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCSCSHHHHHHH
T ss_pred --------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCcchHHHHHHH
Confidence 88999999999999999999999999999999999999876 899999 5665777
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------cHHHHH
Q 005108 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLG--QWERSVEDSNQALLIQPNYTKALLRRAASNSKLE---------KWADAV 568 (714)
Q Consensus 500 ~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~eA~ 568 (714)
+.+|+++++++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|.++| .+++|+
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 59999999999999999999999999988 799999999998 999999999999999999985 359999
Q ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q 005108 569 RDFEVL-RRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 569 ~~~~~a-l~~~p~~~~~~~~L~~~~~~l 595 (714)
++|+++ ++++|.....+..+.......
T Consensus 339 ~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 339 ELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999 999999999998887766543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=2.3e-27 Score=251.89 Aligned_cols=279 Identities=18% Similarity=0.111 Sum_probs=221.6
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 262 LSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 262 l~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
+..+.+++...+.++ ..++.+|.++...|++++|+..|+++++.+|++..+|..+|.+|...|++++|+..|+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a- 125 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC- 125 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 344555555555544 459999999999999999999999999999999999999999999998888888777554
Q ss_pred CCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 338 QQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
++.+|+ ....+..+|.+|...|++++|+.+|+++++++|
T Consensus 126 ----------------------------------------l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 126 ----------------------------------------LELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp ----------------------------------------HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred ----------------------------------------HhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 444554 355666788888888888888888888888877
Q ss_pred CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
.+..... ........+..++.++...|++++|+.+|+++++++|+ +..++..+ |.++...|+
T Consensus 165 ~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------~~~~~~~g~ 228 (365)
T 4eqf_A 165 KYKYLVK----NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL------------GVLFHLSGE 228 (365)
T ss_dssp HHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH------------HHHHHHHTC
T ss_pred cchHHHh----hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH------------HHHHHHCCC
Confidence 6511000 00011334556799999999999999999999999999 88887765 999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|++++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC------------HHHHHHHHHHHHHhhhh
Q 005108 576 RELPDD------------NEIAESLFHAQVSLKKS 598 (714)
Q Consensus 576 ~~~p~~------------~~~~~~L~~~~~~l~~~ 598 (714)
+++|++ ..++..|..+...+++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999874 56677777777666543
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=8.4e-26 Score=228.94 Aligned_cols=180 Identities=13% Similarity=-0.007 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 34456667777777777777777777777776 5678888888888888888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQ 544 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 544 (714)
..++..+ |...+..+++++|+.+|+++++++|++..+++.+|.++..+|+ +++|+..|++++++.
T Consensus 142 ~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 142 PKVFYEL------------GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 8877765 7344445588999999999999988888888899999998888 888999999988875
Q ss_pred ---CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 545 ---PN-----YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 545 ---p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
|+ ...++..+|.+|...|++++|+++|+++++++|+++.+++.+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 44 23688889999999999999999999999999999998888766543
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-25 Score=225.85 Aligned_cols=240 Identities=26% Similarity=0.412 Sum_probs=182.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------HHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------WRAH 313 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 313 (714)
.++.++.+|..++..|++++|+.+|+++++.+ .+..++..+|.++..+|++++|+..|+++++++|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46788889999999999999999999999888 888888999999999999999999999888877665 4555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..+|.++...|++++|+.+|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~------------------------------------------------------------ 102 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYY------------------------------------------------------------ 102 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------------------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHH------------------------------------------------------------
Confidence 55555555555555554444
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
+++++++|. +.++...|++++|+..+++++..+|.+..++..
T Consensus 103 ----------------~~a~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (258)
T 3uq3_A 103 ----------------QKSLTEHRT----------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144 (258)
T ss_dssp ----------------HHHHHHCCC----------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ----------------HHHHhcCch----------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 333333332 123445566777777777777777776666665
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
+ |.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 145 ~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 145 E------------GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp H------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred H------------HHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4 7778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 005108 554 RAASNSKLEKWADAVRDFEVLRREL------PDDNEIAESLFHA 591 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~L~~~ 591 (714)
+|.++..+|++++|+.+|+++++++ |++.++...+.++
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 8888888888888888888888888 8877777777654
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=3.7e-25 Score=226.89 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=196.7
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHc
Q 005108 286 LTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKV 364 (714)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~ 364 (714)
.+..|+|++|+..++++...+|++ .++...++.+|..+|++++|+..++.. ++.. +..+..++..+...
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~------~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPE------LQAVRMFAEYLASH 78 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHH------HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChh------HHHHHHHHHHHcCC
Confidence 344455555555544444444443 234444455555555555554443221 1111 12222333444555
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH
Q 005108 365 GDWKSALREGDAAIAA--GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442 (714)
Q Consensus 365 g~~~~Al~~~~~al~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~ 442 (714)
+++++|++.+++++.. +|+ ...++..+|.++...|++++|++.|++ |.+ ..++..++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~-~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--------------~~~~~~l~~ 138 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVT-NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--------------LECMAMTVQ 138 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCS-CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--------------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--------------HHHHHHHHH
Confidence 5666666666776665 365 456777899999999999999999998 666 778999999
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
++..+|++++|++.|+++++.+|++....... .....+...|++++|+..|+++++.+|+++.+++++|.
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999999986443322 11244556799999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD-AVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~p~~~~~~~~L 588 (714)
++.++|++++|+..|+++++++|+++.+++++|.++..+|++++ +.++++++++++|+++.+....
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999976 5789999999999999987643
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=2e-25 Score=226.08 Aligned_cols=252 Identities=13% Similarity=0.034 Sum_probs=209.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRL 316 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l 316 (714)
+++.++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++ .|.+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567788999999999999999999999999999988999999999999999999999999998 3333 4457777
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.++...|++++|+.+| +++++.+|.. ...+..+|.+|
T Consensus 81 g~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQY-----------------------------------------QAAVDRDTTR-LDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCccc-HHHHHHHHHHH
Confidence 77777777777666665 4555666764 45677799999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+.+|+++++.+|.+ ..+++.+|...+..+++++|+..|+++++++|++...+..+
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~-- 182 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTD--------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR-- 182 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--
T ss_pred HHccCHHHHHHHHHHHhhcCCCc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH--
Confidence 99999999999999999999998 88999999555556799999999999999999998888766
Q ss_pred HHHHHHHHHHHhHHhhCcC---HHHHHHHHHHhhccC---CC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 477 VKLVARARARGNDLFKSER---FTEACQAYGEGLRFD---PS-----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
|.++...++ +++|+..|++++++. |+ ...++..+|.+|...|++++|+++|+++++++|
T Consensus 183 ----------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 183 ----------ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp ----------HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 888888888 999999999999875 44 237899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 005108 546 NYTKALLRRAASNSKL 561 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~ 561 (714)
++..++-.++.+....
T Consensus 253 ~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 253 TNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TCHHHHHHHC------
T ss_pred cHHHHHHHhhhhhccc
Confidence 9999998887766544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-25 Score=222.18 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
.+..+..+|.++...|++++|+..|+++++.+ .+..++..+|.++..+|++++|+.+|++++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----------------- 65 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV----------------- 65 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------
Confidence 46788999999999999999999999999999 889999999999999999999988876553
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
+..|... +.. ....
T Consensus 66 ------------------------~~~~~~~-------------------------------~~~-----------~~~~ 79 (258)
T 3uq3_A 66 ------------------------EQGREMR-------------------------------ADY-----------KVIS 79 (258)
T ss_dssp ------------------------HHHHHTT-------------------------------CCH-----------HHHH
T ss_pred ------------------------HhCcccc-------------------------------cch-----------HHHH
Confidence 1111100 000 0115
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 514 (714)
.++..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..++++++.+|.+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHHHHHHHcCcchH
Confidence 67899999999999999999999999999886 3346677889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|++..++..+..++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhcc
Q 005108 595 LKKSRG 600 (714)
Q Consensus 595 l~~~~~ 600 (714)
+++...
T Consensus 220 ~g~~~~ 225 (258)
T 3uq3_A 220 VKEYAS 225 (258)
T ss_dssp TTCHHH
T ss_pred HhhHHH
Confidence 776543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=1.4e-24 Score=225.74 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHL 355 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~ 355 (714)
...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------ 82 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR------------------ 82 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 45678999999999999999999999999999999999999999999988888888776554
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
+.+|. ....+..+|.++...|++++|+..|+++++.+|.+....... ........
T Consensus 83 -----------------------~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (327)
T 3cv0_A 83 -----------------------MLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN-LQADVDID 137 (327)
T ss_dssp -----------------------HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred -----------------------hcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-hHHHHHHH
Confidence 34444 244555677778888888888888888877777762111000 00000001
Q ss_pred HHHHH-HH-HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 436 TFFVR-AQ-IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 436 ~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
....+ +. ++...|++++|+.+++++++..|++..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL------------GVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 11122 44 58889999999999999999999999888766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------C
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD------------D 581 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~ 581 (714)
..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+++|++++++.|+ +
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 005108 582 NEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 582 ~~~~~~L~~~~~~l~~~~ 599 (714)
..++..+..++..+++.+
T Consensus 286 ~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 888888888887776544
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=239.74 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=241.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCc
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNY 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 309 (714)
.....++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999998 468999999999999999999999999877 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC--------------------HHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD--------------------WKS 369 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~--------------------~~~ 369 (714)
..++..+|.++...|++++|+.+|++++...... .........+..++.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 7899999999999999999999999987521111 0112334567778888888898 999
Q ss_pred HHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 370 ALREGDAAIAAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 370 Al~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
|+..+++++.... ......+..+|.+|...|++++|+.++++++++.+... .......++..+|.++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------DKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHH
Confidence 9999988887622 11234567788889999999999999988887765531 1112355788888899
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYC 518 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 518 (714)
...|++++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999888876554311100 01122345888888899999999888888874433 66788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA 567 (714)
.+|.+|..+|++++|+.+|++++++. +....++..++.++..+|+...+
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 88888888899999999888888763 23357788888888888876443
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-24 Score=212.55 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=173.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
|+++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++..++. .
T Consensus 82 ~~~~~~~---------~--------------------------------------------------------------- 89 (217)
T 2pl2_A 82 AYVALYR---------Q--------------------------------------------------------------- 89 (217)
T ss_dssp HHHHHHH---------T---------------------------------------------------------------
T ss_pred HHHHhhh---------h---------------------------------------------------------------
Confidence 7754310 0
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
. .. .+...|++++|+..|+++++++|++..++..+
T Consensus 90 -----------------~-~~-----------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l---- 124 (217)
T 2pl2_A 90 -----------------A-ED-----------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQR---- 124 (217)
T ss_dssp -----------------C-SS-----------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred -----------------h-hh-----------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHH----
Confidence 0 00 01235889999999999999999999998876
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|.++...|++++|+..|+++++++ +++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 125 --------g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 125 --------GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLR 575 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al 575 (714)
..+|++++|+..|+++-
T Consensus 196 ~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 196 LLKGKAEEAARAAALEH 212 (217)
T ss_dssp TC---------------
T ss_pred HHccCHHHHHHHHHHHh
Confidence 99999999999998764
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.1e-24 Score=210.09 Aligned_cols=186 Identities=20% Similarity=0.166 Sum_probs=147.3
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.....++|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++..++.. ...
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-------------~~~- 92 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ-------------AED- 92 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT-------------CSS-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh-------------hhh-
Confidence 334445689999999999999999999999999999999999999999999999999876210 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
. ....|++++|+..|+++++.+|++ ...+
T Consensus 93 ---------~-----------------------------------------~~~~g~~~~A~~~~~~al~~~P~~-~~~~ 121 (217)
T 2pl2_A 93 ---------R-----------------------------------------ERGKGYLEQALSVLKDAERVNPRY-APLH 121 (217)
T ss_dssp ---------H-----------------------------------------HHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ---------h-----------------------------------------cccccCHHHHHHHHHHHHHhCccc-HHHH
Confidence 0 012366777788888889999974 5677
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..+|.+|..+|++++|+..|+++++++ ++ ..+++.+|.++...|++++|+..|+++++++|++..
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DT--------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cc--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 789999999999999999999999999 76 788999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
++..+ |.++...|++++|+..|+++-
T Consensus 187 ~~~~l------------a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 LRVRY------------ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHH------------HHHHTC---------------
T ss_pred HHHHH------------HHHHHHccCHHHHHHHHHHHh
Confidence 98866 999999999999999998764
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.5e-22 Score=226.29 Aligned_cols=326 Identities=10% Similarity=0.001 Sum_probs=251.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|.+...|..++. +...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 46677777777777 36778888888888888888888888888888888888888888888888888777 34454444
Q ss_pred H------------------------------------------HHHHH---------cCCHHHHHHHHHhhcCCCChH--
Q 005108 317 G------------------------------------------SLLVR---------LGQVENARRHLCLSGQQADPT-- 343 (714)
Q Consensus 317 a------------------------------------------~~~~~---------~g~~~~A~~~~~~al~~~~~~-- 343 (714)
+ ..... .|++++|+.+|++++..+...
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 3 22222 567888888888888733221
Q ss_pred -HHHHHHHHHH----------------HHHHh---------------------------------HH-----HHH-----
Q 005108 344 -EVHRLQVVEK----------------HLSKC---------------------------------TD-----ARK----- 363 (714)
Q Consensus 344 -~~~~l~~~~~----------------~~~~a---------------------------------~~-----~~~----- 363 (714)
.+.....++. .+..+ .. ...
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1111111000 00000 00 000
Q ss_pred -cCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHhhcccc-CCCCCCCch
Q 005108 364 -VGD----WKSALREGDAAIAAGADFSPQLSMCRVEALLK-------LHQLE-------DAESSLSNIPK-IEPSTVSSS 423 (714)
Q Consensus 364 -~g~----~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~ 423 (714)
.++ .+.++..|++++...|. .+.+|..++..+.. .|+++ +|+.+|+++++ ..|++
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---- 320 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---- 320 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----
Confidence 112 13677899999999987 47888889999886 79987 99999999997 78988
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQA 502 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~ 502 (714)
..+|..++.++...|++++|...|++++++.|.+. .+|..+ +..+.+.|++++|+..
T Consensus 321 ----------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 321 ----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY------------MKFARRAEGIKSGRMI 378 (530)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHH------------HHHHHHhcCHHHHHHH
Confidence 88999999999999999999999999999999985 467655 8888889999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 503 YGEGLRFDPSNSVLYCNRAAC-WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 503 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
|+++++..|.....+...+.+ +...|++++|+..|+++++..|+++.+|..++.++.++|++++|...|+++++..|.+
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 999999999888888777765 4569999999999999999999999999999999999999999999999999998776
Q ss_pred HH----HHHHHHHH
Q 005108 582 NE----IAESLFHA 591 (714)
Q Consensus 582 ~~----~~~~L~~~ 591 (714)
++ ++......
T Consensus 459 ~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 459 PEKSGEIWARFLAF 472 (530)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65 55444433
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=9.6e-25 Score=235.44 Aligned_cols=291 Identities=16% Similarity=0.102 Sum_probs=233.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCc
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNY 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 309 (714)
..+..++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|..+|++++|+.+|++++++ .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4567788999999999999999999999999999986 58999999999999999999999999987 5667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
..++..+|.+|...|++++|+.+|++++... ...++. ......+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------~~~~~~---------------~~~~~~~ 169 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLA---------------------RQLGDR---------------LSEGRAL 169 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHHTCH---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------------HHhhch---------------HHHHHHH
Confidence 8899999999999999999999998775210 000100 0112345
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH
Q 005108 390 MCRVEALLKLHQ-----------------LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN 452 (714)
Q Consensus 390 ~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 452 (714)
..+|.+|...|+ +++|+.++++++++.+.. ........++..+|.++...|++++
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~ 241 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--------GDRGAQGRACGNLGNTYYLLGDFQA 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCChHH
Confidence 557777777777 777777777776543221 1111236689999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFK 526 (714)
Q Consensus 453 A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 526 (714)
|+.+|++++++.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|..
T Consensus 242 A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999987664322110 11123355999999999999999999999987643 6889999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 527 LGQWERSVEDSNQALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
+|++++|+.+|++++++.+. ...++..+|.+|..+|++++|+++|++++++.+.
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999987543 2468999999999999999999999999999864
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=3.6e-22 Score=220.96 Aligned_cols=310 Identities=11% Similarity=-0.001 Sum_probs=201.0
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHH
Q 005108 240 GDAEELKRMGNELYR----KGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
.++.+++.+|..|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. ++..
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 455666666666666 66666666666666553 355566666666665 55666666666666553 3455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHHHHHH---------------------------HHHHHHhHH
Q 005108 312 AHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHRLQVV---------------------------EKHLSKCTD 360 (714)
Q Consensus 312 a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~---------------------------~~~~~~a~~ 360 (714)
+++.+|.+|.. .+++++|+.+|+++.+..++.....+..+ ..++.++.+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 228 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655 55666666666665554443333222221 123334444
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhh
Q 005108 361 ARK----VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432 (714)
Q Consensus 361 ~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 432 (714)
+.. .+++++|+.+|+++++.+ ....+..++.+|.. .+++++|+.+|+++.+. .+
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~------------- 290 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN------------- 290 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-------------
Confidence 443 566666666666666543 24445556666666 66666666666666554 22
Q ss_pred hHHHHHHHHHHHHHh-----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc---CHHHHHHHHH
Q 005108 433 EAYTFFVRAQIEMAL-----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE---RFTEACQAYG 504 (714)
Q Consensus 433 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g---~~~~A~~~~~ 504 (714)
..+++.+|.+|... +++++|+.+|+++++.. +..++..+ |.+|...| ++++|+.+|+
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANL------------GAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHSCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHH------------HHHHHhCCCcccHHHHHHHHH
Confidence 44666777777766 67777777777776653 34444443 77777755 7888888888
Q ss_pred HhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Q 005108 505 EGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRR 576 (714)
Q Consensus 505 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~ 576 (714)
++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 356 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 356 KAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 88876 578888888888888 88888888888888875 357888888888888 7888889999988888
Q ss_pred hCCC---CHHHHHHHHH
Q 005108 577 ELPD---DNEIAESLFH 590 (714)
Q Consensus 577 ~~p~---~~~~~~~L~~ 590 (714)
..|+ ++.+...|..
T Consensus 432 ~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 432 NDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHCCHHHHHHHHHHHTT
T ss_pred CCCCCcCCHHHHHHHHh
Confidence 8854 6666555544
No 36
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=4.7e-24 Score=221.99 Aligned_cols=290 Identities=16% Similarity=0.100 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCcHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNYWR 311 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 311 (714)
...++..|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+..+++++++ .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4678889999999999999999999999999998 478889999999999999999999999877 445577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
++..+|.++...|++++|+.+|++++.... ..++.. .....+..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~~---------------~~~~~~~~ 128 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR---------------------ELNDKV---------------GEARALYN 128 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------------HhcCch---------------HHHHHHHH
Confidence 899999999999999999999887753100 000000 01223445
Q ss_pred HHHHHHHcCC--------------------HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHH
Q 005108 392 RVEALLKLHQ--------------------LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE 451 (714)
Q Consensus 392 la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 451 (714)
++.+|...|+ +++|+.++++++...... ........++..+|.++...|+++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--------GDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 6777777777 777777777766542211 011123668999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHH
Q 005108 452 NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWF 525 (714)
Q Consensus 452 ~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 525 (714)
+|+.++++++++.+...... .....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|.
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 99999999997654322110 011123355999999999999999999999876554 778999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 526 KLGQWERSVEDSNQALLIQPNY------TKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
.+|++++|+.++++++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999875432 4688999999999999999999999999987653
No 37
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.5e-21 Score=215.88 Aligned_cols=318 Identities=11% Similarity=0.001 Sum_probs=216.8
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCC
Q 005108 237 ICGGDAEELKRMGNELYR----KGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPN 308 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 308 (714)
..+.++++++.+|..|+. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .
T Consensus 34 a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 34 AESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 356789999999999999 99999999999999986 679999999999999 99999999999999875 5
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHH----cCCHHHHHHHHHHHHHc
Q 005108 309 YWRAHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARK----VGDWKSALREGDAAIAA 380 (714)
Q Consensus 309 ~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~----~g~~~~Al~~~~~al~~ 380 (714)
+..+++.||.+|.. .+++++|+.+|+++....++. .++.++.+|.. .+++++|+.+|+++++.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS---------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 78999999999999 899999999999998765443 34555666666 77888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHH
Q 005108 381 GADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFEN 452 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 452 (714)
+ ....+..+|.+|.. .+++++|+.+|+++.+.. + ..+++.+|.+|.. .+++++
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--------------~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--D--------------ELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--------------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--C--------------HHHHHHHHHHHHcCCCCCCCHHH
Confidence 3 46667778888887 788888888888887653 2 3355555665554 555666
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhHH------------------------HHHHHHHHHhHHhhC-----cCHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPRNVEVAVLLNNVK------------------------LVARARARGNDLFKS-----ERFTEACQAY 503 (714)
Q Consensus 453 A~~~~~~al~~~p~~~~~~~~l~~l~------------------------~~~~~~~~g~~~~~~-----g~~~~A~~~~ 503 (714)
|+.+|+++++. .+...+..+..+. .......+|.+|... +++++|+.+|
T Consensus 242 A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 242 SRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 66666665543 2233333220000 000011225555554 5556666666
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLG---QWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRR 576 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~ 576 (714)
+++++. .++.+++++|.+|...| ++++|+++|+++++. +++.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 555554 24455555666555544 555666666666554 345566666666655 5566666666666655
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 005108 577 ELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~~~ 594 (714)
. .++.+...|..++..
T Consensus 396 ~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 396 Q--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp T--TCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHc
Confidence 4 245555555555443
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=229.62 Aligned_cols=310 Identities=14% Similarity=0.048 Sum_probs=250.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHH
Q 005108 274 RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ 349 (714)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 349 (714)
.....+..+|.++...|++++|+..|++++++.|.+ ..++..+|.++...|++++|+.+|++++...... .....
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-cccHH
Confidence 456788999999999999999999999999999987 4689999999999999999999999987511000 01123
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCC--------------------HHH
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-----SPQLSMCRVEALLKLHQ--------------------LED 404 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~--------------------~~~ 404 (714)
....+..++.++...|++++|+..+++++...+.. ....+..+|.+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45667888999999999999999999999875531 24467789999999999 999
Q ss_pred HHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHH
Q 005108 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 405 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 484 (714)
|+.++++++++.... ........++..+|.++...|++++|+.++++++++.+....... ....+.
T Consensus 166 A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~ 231 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL--------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYS 231 (406)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHH
Confidence 999999988763322 111223678999999999999999999999999987654432110 111233
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALL 552 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 552 (714)
.+|.++...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++.+.. ..++.
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55999999999999999999999886655 7889999999999999999999999999875443 67899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKKS 598 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~~ 598 (714)
.+|.+|..+|++++|+.+|++++++.+.. ..+...+..++..++..
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999999999999999999999884432 45666677777666654
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.3e-22 Score=208.00 Aligned_cols=278 Identities=13% Similarity=0.053 Sum_probs=231.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 005108 249 GNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE 327 (714)
Q Consensus 249 g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 327 (714)
.+.++..|+|++|+..+++....+|++ ......++.+|+.+|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456778899999999998887777776 45778889999999999999988865 35667888889999999999999
Q ss_pred HHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005108 328 NARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAE 406 (714)
Q Consensus 328 ~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (714)
+|++.|++++.. .+|... ..++.++.++...|++++|++.+++ | .....+..++.+|.++|++++|+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~------~~~~~la~~~~~~g~~~~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNT------TFLLMAASIYFYDQNPDAALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCH------HHHHHHHHHHHHTTCHHHHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCH------HHHHHHHHHHHHCCCHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999988753 233321 3466677888999999999999987 4 35778888999999999999999
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH--HHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA--QIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 484 (714)
+.|+++++.+|++ .......+ .++...|++++|+..|+++++.+|+++.++..+
T Consensus 151 ~~l~~~~~~~p~~--------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l---------- 206 (291)
T 3mkr_A 151 KELKKMQDQDEDA--------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ---------- 206 (291)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH----------
T ss_pred HHHHHHHhhCcCc--------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH----------
Confidence 9999999999887 32222222 334456899999999999999999999988866
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWER-SVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++ +.++++++++++|+++.+. ....+.+.
T Consensus 207 --a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~ 280 (291)
T 3mkr_A 207 --AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKEND 280 (291)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 5789999999999998655 45677777
Q ss_pred HHHHHHHH
Q 005108 564 WADAVRDF 571 (714)
Q Consensus 564 ~~eA~~~~ 571 (714)
|+++..-|
T Consensus 281 fd~~~~~~ 288 (291)
T 3mkr_A 281 FDRLVLQY 288 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77777665
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=8.2e-23 Score=206.92 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=204.8
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 253 YRKGCFGEALSMYDKAISLA----PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 253 ~~~g~~~~Al~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34588999999999999973 45688999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+.+|++ +++.+|.. ...+..+|.+|...|++++|+.+
T Consensus 96 A~~~~~~-----------------------------------------al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~ 133 (275)
T 1xnf_A 96 AYEAFDS-----------------------------------------VLELDPTY-NYAHLNRGIALYYGGRDKLAQDD 133 (275)
T ss_dssp HHHHHHH-----------------------------------------HHHHCTTC-THHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-----------------------------------------HHhcCccc-cHHHHHHHHHHHHhccHHHHHHH
Confidence 8777644 44556653 45566799999999999999999
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHh
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~ 488 (714)
|+++++.+|.+ ...+...+ ++...|++++|+..+++++...|.+...+. .+.
T Consensus 134 ~~~a~~~~~~~--------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~ 185 (275)
T 1xnf_A 134 LLAFYQDDPND--------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-------------IVE 185 (275)
T ss_dssp HHHHHHHCTTC--------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-------------HHH
T ss_pred HHHHHHhCCCC--------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-------------HHH
Confidence 99999999987 33333333 446779999999999999999888866543 267
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+...+++++|+..++++++..|.. ..+++.+|.+|..+|++++|+..|+++++++|++.. ..+.++..+|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHH
Confidence 7888899999999999999887643 789999999999999999999999999999997744 347788999999
Q ss_pred HHHHHHH
Q 005108 565 ADAVRDF 571 (714)
Q Consensus 565 ~eA~~~~ 571 (714)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=1.5e-22 Score=192.28 Aligned_cols=173 Identities=14% Similarity=0.208 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
...+|..+|.+|..+|++++|+.+|+++++++|++ ..++..+|.++...|++++|+..+++++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--------------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46788889999999999999999999999999999 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|++..++..+ |.++...+++++|+..++++++++|.+..++..+|.+|.++|++++|++.|+++++++
T Consensus 70 ~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 70 TTSAEAYYIL------------GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 9999988866 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|++..+++.+|.+|.++|++++|+++|+++++++|++..
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999987643
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=2.5e-21 Score=196.45 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.|+++.+++.+|..++..|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356778888888888888888888888888887 6777888888888888 888888888888888774 67777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhh
Q 005108 314 QRLGSLLVR----LGQVENARRHLCLS 336 (714)
Q Consensus 314 ~~la~~~~~----~g~~~~A~~~~~~a 336 (714)
+.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a 104 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKA 104 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence 778877777 66666666666444
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.6e-22 Score=200.79 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=185.5
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..+...|++++|+..|+++++.+|.. ...+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 90 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSA------------ 90 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 456777888999999999999999999999874 6777789999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.+|+++++..|.+..++..+ |.++...|++++|+.+|+++++..|
T Consensus 91 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 91 --ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML------------GTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH------------HHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred --hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
.+..++..+|.++...|++++|+..|+++++..|++..++..+|.+|..+|++++|+.+|+++++++|++..++..+..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred H
Q 005108 592 Q 592 (714)
Q Consensus 592 ~ 592 (714)
.
T Consensus 237 ~ 237 (243)
T 2q7f_A 237 G 237 (243)
T ss_dssp -
T ss_pred H
Confidence 4
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=3.5e-21 Score=195.40 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHH
Q 005108 272 APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHR 347 (714)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 347 (714)
+|.++.+++.+|.++...|++++|+.+|+++++ +++..+++.+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~---------- 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC---------- 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH----------
Confidence 477889999999999999999999999999998 7778899999999998 888888888776654
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCch
Q 005108 348 LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 348 l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
+.+ ....+..+|.+|.. .+++++|+.+|+++++.+ +
T Consensus 70 -------------------------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---- 109 (273)
T 1ouv_A 70 -------------------------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---- 109 (273)
T ss_dssp -------------------------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----
T ss_pred -------------------------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C----
Confidence 222 34556678888888 899999999999988764 4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcC
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SER 495 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~ 495 (714)
..+++.+|.+|.. .+++++|+.+|+++++.+ +..++..+ |.++.. .++
T Consensus 110 ----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~~~~~~~~~~~ 165 (273)
T 1ouv_A 110 ----------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL------------GSLYDAGRGTPKD 165 (273)
T ss_dssp ----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHTSSSCCC
T ss_pred ----------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH------------HHHHHcCCCCCCC
Confidence 6688999999999 999999999999999875 45555544 888888 899
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADA 567 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA 567 (714)
+++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+++.+|.+|.. .+++++|
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 99999999999987 468899999999999 9999999999999999865 7899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCH
Q 005108 568 VRDFEVLRRELPDDN 582 (714)
Q Consensus 568 ~~~~~~al~~~p~~~ 582 (714)
+++|++++++.|++.
T Consensus 242 ~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 242 IENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 999999999987643
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=2.5e-22 Score=199.30 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
...|++++|+.+|+++ ++.
T Consensus 102 ~~~~~~~~A~~~~~~~-----------------------------------------~~~-------------------- 120 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-----------------------------------------LRA-------------------- 120 (243)
T ss_dssp HHTTCHHHHHHHHHHH-----------------------------------------HHH--------------------
T ss_pred HHhccHHHHHHHHHHH-----------------------------------------HHh--------------------
Confidence 7777777776665433 222
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+|.+ ..++..+|.++...|++++|+.+++++++..|++..++..+
T Consensus 121 ---------------~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 165 (243)
T 2q7f_A 121 ---------------GMEN--------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF------ 165 (243)
T ss_dssp ---------------TCCS--------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred ---------------CCCC--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH------
Confidence 2333 33455566666666666666666666666666666655544
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|.++...|++++|+.+|+++++..|++..++..+|.+|...|++++|+.+|+++++++|++..++..++.+...
T Consensus 166 ------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 166 ------GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp ------HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 66667777777777777777777777777777777777777777777777777777777777776666655544
Q ss_pred h
Q 005108 561 L 561 (714)
Q Consensus 561 ~ 561 (714)
.
T Consensus 240 ~ 240 (243)
T 2q7f_A 240 H 240 (243)
T ss_dssp -
T ss_pred c
Confidence 3
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=2.7e-21 Score=193.32 Aligned_cols=211 Identities=13% Similarity=0.042 Sum_probs=197.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..|+++++.+|.. ...+..+|.++...|++++|+++|+++++.+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----------
Confidence 4567788888999999999999999999999874 6777789999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
..++..+|.++...|++++|+++|++++. ..|.+..++..+ |.++...|++++|+.+|+++++
T Consensus 105 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 105 ---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL------------GLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999999999999 777777777655 9999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..|.+..++..+|.++..+|++++|+..|+++++..|++..++..++.++...|++++|.++++++++++|+++.+...+
T Consensus 170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=3.3e-21 Score=192.64 Aligned_cols=216 Identities=16% Similarity=0.106 Sum_probs=177.0
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGD-AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~-~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
.+|.+ +..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 78899999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+|.++...|++++|+.+|++++..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-------------------------------------------------------- 134 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-------------------------------------------------------- 134 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC--------------------------------------------------------
Confidence 888888888777777776554310
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
...|.+ ..++..+|.++...|++++|+.+|+++++..|.+..++..+
T Consensus 135 ------------------~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l- 181 (252)
T 2ho1_A 135 ------------------TLYPER--------------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM- 181 (252)
T ss_dssp ------------------TTCTTH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-
T ss_pred ------------------ccCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH-
Confidence 022333 55677777777888888888888888888888777776655
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|.++...|++++|+.+|+++++..|.+...+..++.++...|++++|++++++++++.|++..++.
T Consensus 182 -----------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 182 -----------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 778888888888888888888888888888888888888888888888888888888888776654
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=6.9e-22 Score=217.19 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI-GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 335 (714)
++++|+..++++....|.++.+++.+|.++..+|++ ++|+.+|+++++++|++..+|+.+|.+|..+|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788888888888999999999999999999999 9999999999999999999999999999988888888777755
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHH
Q 005108 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL---------HQLEDAE 406 (714)
Q Consensus 336 al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~A~ 406 (714)
+ ++.+|+ ...+..+|.+|..+ |++++|+
T Consensus 163 a-----------------------------------------l~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 163 A-----------------------------------------LTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp H-----------------------------------------HTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred H-----------------------------------------HhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 4 455555 46677789999998 9999999
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
.+|+++++++|++ ..+|+.+|.+|... ++. .
T Consensus 200 ~~~~~al~~~p~~--------------~~~~~~lg~~~~~~-----------------------~~~------------~ 230 (474)
T 4abn_A 200 RQAKLAVQMDVLD--------------GRSWYILGNAYLSL-----------------------YFN------------T 230 (474)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHHH-----------------------HHH------------T
T ss_pred HHHHHHHHhCCCC--------------HHHHHHHHHHHHHH-----------------------HHh------------h
Confidence 9999999999998 88899999999876 000 0
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDP---SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
+. ..|++++|+.+|+++++++| .++.+|+++|.+|..+|++++|++.|+++++++|++..++..++.++..+|+
T Consensus 231 ~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 231 GQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 11 33667777777777777777 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005108 564 WADAVRDFEVL 574 (714)
Q Consensus 564 ~~eA~~~~~~a 574 (714)
+++|++.+.+.
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88888877655
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.9e-21 Score=199.87 Aligned_cols=251 Identities=10% Similarity=-0.021 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHc
Q 005108 259 GEALSMYDKAISLAPRNAAFRSNRAAALTG-------LGRI-------GEAVKECEEAVR-LDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 259 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 323 (714)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5885 899999999999 7999999999999988888
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
|++++|+..|+++ ++..|.....+|..++.++.+.|+++
T Consensus 113 ~~~~~A~~~~~~a-----------------------------------------l~~~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 113 MKYEKVHSIYNRL-----------------------------------------LAIEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp TCHHHHHHHHHHH-----------------------------------------HTSSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHH-----------------------------------------HhccccCccHHHHHHHHHHHHhcCHH
Confidence 8777777766554 34444433335666777778888888
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVAR 482 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 482 (714)
+|+..|+++++..|.. ..+|...+.+... .|++++|+.+|+++++.+|++..+|..+
T Consensus 152 ~A~~~~~~a~~~~p~~--------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------- 209 (308)
T 2ond_A 152 SGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY-------- 209 (308)
T ss_dssp HHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH--------
T ss_pred HHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--------
Confidence 8888888888877766 4445545544333 5788888888888888888887777655
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRF---DPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+..+...|++++|+.+|+++++. .|+ ...+|..++..+.+.|++++|...++++++..|++..... ++.+
T Consensus 210 ----~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~- 283 (308)
T 2ond_A 210 ----IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL- 283 (308)
T ss_dssp ----HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-
T ss_pred ----HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-
Confidence 77777888888888888888874 443 5677777788888888888888888888888777542221 1111
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..-.+.+.++|++++....|
T Consensus 284 ----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 284 ----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp ----------HTTTCBTTBCSSCHHHHHTT
T ss_pred ----------HHHHHhcccCCCCHHHHHhc
Confidence 11114566777777766554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=1.4e-20 Score=184.00 Aligned_cols=211 Identities=15% Similarity=0.026 Sum_probs=195.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..++++++..|+. ...+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----------- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------
Confidence 3557778888999999999999999999999874 6677789999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 431 LSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
..++..+|.++... |++++|+.+++++++ ..|.+...+..+ |.++...|++++|+.+|++++
T Consensus 76 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 76 ---AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK------------GICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Confidence 77899999999999 999999999999999 556556666655 999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP-NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+..|.+..++..+|.++...|++++|+..|+++++..| ++..++..++.++...|++++|..+++.+++.+|+++.+..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999877
Q ss_pred HH
Q 005108 587 SL 588 (714)
Q Consensus 587 ~L 588 (714)
.+
T Consensus 221 ~l 222 (225)
T 2vq2_A 221 VL 222 (225)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=1.3e-20 Score=184.27 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=164.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.|.++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888899999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 318 SLLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 318 ~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
.++... |++++|+.+|++++. .|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~------------------------------------------~~-------------- 107 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA------------------------------------------DP-------------- 107 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT------------------------------------------ST--------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHc------------------------------------------Cc--------------
Confidence 888777 777777776654431 00
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
..|.+ ..++..+|.++...|++++|+.+|+++++..|++..++..+
T Consensus 108 ------------------~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-- 153 (225)
T 2vq2_A 108 ------------------TYPTP--------------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL-- 153 (225)
T ss_dssp ------------------TCSCH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--
T ss_pred ------------------CCcch--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH--
Confidence 12222 44566677777777777777777777777777776666554
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDP-SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
|.++...|++++|+.+|+++++..| .+...+..++.++...|++++|..+++.+++.+|++..+...
T Consensus 154 ----------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 154 ----------ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp ----------HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777777 777777777777777777777777777777777777665543
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.8e-21 Score=213.91 Aligned_cols=206 Identities=15% Similarity=0.083 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL-EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
.+++++..+++.....|. ...++..+|.+|...|++ ++|+.+|+++++++|.+ ..+|+.+|.+|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------------~~a~~~lg~~~ 147 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------------VEAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHH
Confidence 356667777777766664 677788899999999999 99999999999999998 88999999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC---------cCHHHHHHHHHHhhccCCCCHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS---------ERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 515 (714)
...|++++|+.+|+++++++|+ ..++..+ |.++... |++++|+.+|+++++++|++..
T Consensus 148 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~l------------g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTHCKN-KVSLQNL------------SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCC-HHHHHHH------------HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-HHHHHHH------------HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999 5666655 9999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 516 LYCNRAACWFKL--------GQWERSVEDSNQALLIQP---NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 516 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|+++|.+|..+ |++++|+.+|+++++++| +++.+|+.+|.+|..+|++++|+++|+++++++|++..+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999 999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q 005108 585 AESLFHAQVSLKKSR 599 (714)
Q Consensus 585 ~~~L~~~~~~l~~~~ 599 (714)
+..+..++..+++..
T Consensus 295 ~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 295 QQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887776543
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=4.6e-20 Score=206.14 Aligned_cols=317 Identities=11% Similarity=-0.019 Sum_probs=235.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCC-CChH
Q 005108 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ-ADPT 343 (714)
Q Consensus 265 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 343 (714)
|+++++.+|.+..+|..++.. ...|++++|+..|+++++.+|.+...|..++..+.+.|++++|+..|++++.. ++..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 688999999999999999984 88999999999999999999999999999999999999999999999999983 3333
Q ss_pred HHHHHHH---------------HHHHHH------------------HhHHHH---------HcCCHHHHHHHHHHHHHcC
Q 005108 344 EVHRLQV---------------VEKHLS------------------KCTDAR---------KVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 344 ~~~~l~~---------------~~~~~~------------------~a~~~~---------~~g~~~~Al~~~~~al~~~ 381 (714)
.+..... +...+. .+.... ..|++++|...|+++++ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 2221110 001111 111111 15788889999999888 4
Q ss_pred CCCC-HHHHHHHHHHH-------------HHcCCHHHHHHHhhc------cccC-----CCCCCCc--h----h---h--
Q 005108 382 ADFS-PQLSMCRVEAL-------------LKLHQLEDAESSLSN------IPKI-----EPSTVSS--S----Q---T-- 425 (714)
Q Consensus 382 p~~~-~~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~~~~--~----~---~-- 425 (714)
|... ..++....... ...+++++|...+++ .++. .|..... . . .
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6433 22332221111 122344455443332 2221 1110000 0 0 0
Q ss_pred ----------------h---hhh-----hhhhHHHHHHHHHHHHH-------hCcHH-------HHHHHHHHHhc-cCCC
Q 005108 426 ----------------R---FFG-----MLSEAYTFFVRAQIEMA-------LGRFE-------NAVTAAEKAGQ-IDPR 466 (714)
Q Consensus 426 ----------------~---~~~-----~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~ 466 (714)
+ .+. .-....+|+.+|..+.. .|+++ +|+..|+++++ +.|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 0 000 00126688899998886 79987 99999999997 8999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS-VLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
+..+|..+ +..+...|++++|+..|++++++.|.++ .+|..++.++.+.|++++|++.|+++++..|
T Consensus 320 ~~~l~~~~------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 320 NMLLYFAY------------ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99999877 8889999999999999999999999985 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 546 NYTKALLRRAAS-NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 546 ~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.....+...+.+ +...|++++|...|+++++.+|+++.++..+......+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 887777777666 44689999999999999999999999988877765443
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=3e-21 Score=190.22 Aligned_cols=216 Identities=9% Similarity=0.070 Sum_probs=179.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.+|..+...|++++|+..|+++++.+|......+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------------ 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------------
Confidence 56778888999999999999999999999884455666679999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++..+|++++|+..|+++++++|++...+..+ +..+..+|.++...|++++|+..|+++++++|
T Consensus 76 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 76 --ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 77899999999999999999999999999999988765543 33466789999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 512 S--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 512 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+ +..+++++|.+|..+| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|++.++...+.
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9 8899999999987655 445677777776665443 444566778899999999999999999999998887
Q ss_pred HHHH
Q 005108 590 HAQV 593 (714)
Q Consensus 590 ~~~~ 593 (714)
++..
T Consensus 222 ~i~~ 225 (228)
T 4i17_A 222 QVKA 225 (228)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=2.1e-21 Score=211.94 Aligned_cols=302 Identities=15% Similarity=0.038 Sum_probs=214.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI---GEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..+|..+++.|++++|+.+|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 34677888888888888888888765 4567778888888888877 7888888888765 66778888886666
Q ss_pred cC-----CHHHHHHHHHhhcCCCChHHHHHHHH--------------------------HHHHHHHhHHHHHcCCHHHHH
Q 005108 323 LG-----QVENARRHLCLSGQQADPTEVHRLQV--------------------------VEKHLSKCTDARKVGDWKSAL 371 (714)
Q Consensus 323 ~g-----~~~~A~~~~~~al~~~~~~~~~~l~~--------------------------~~~~~~~a~~~~~~g~~~~Al 371 (714)
.+ ++++|+.+|++++...++.....+.. ...++.++.++...+.+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 55 77888888888776444333222221 123455666777777554444
Q ss_pred H----HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 372 R----EGDAAIAAGADFSPQLSMCRVEALLKLH---QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 372 ~----~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
. +++.+...+|. .+..+|.+|...| ++++|+.+|+++.+..+.. +..++.+|.+|
T Consensus 162 ~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~--------------a~~~~~Lg~~y 223 (452)
T 3e4b_A 162 DDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT--------------AQRVDSVARVL 223 (452)
T ss_dssp HHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHH
Confidence 4 44444444433 6777999999999 9999999999999999988 77778999999
Q ss_pred HHh----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH-H--hhCcCHHHHHHHHHHhhccCCCCHHHH
Q 005108 445 MAL----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND-L--FKSERFTEACQAYGEGLRFDPSNSVLY 517 (714)
Q Consensus 445 ~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~ 517 (714)
... +++++|+.+|+++. |.++.+++.+ |.+ + ...+++++|+.+|+++++. .++.++
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~ 286 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA---PGYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAE 286 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 766 79999999999998 8888888776 777 4 5689999999999999875 489999
Q ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 518 CNRAACWFKLG-----QWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 518 ~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 99999998 66 9999999999998 8899999999999887 44999999999999874 556677777
Q ss_pred HHHHH
Q 005108 589 FHAQV 593 (714)
Q Consensus 589 ~~~~~ 593 (714)
..++.
T Consensus 361 g~~y~ 365 (452)
T 3e4b_A 361 AQLFS 365 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=6.9e-21 Score=180.74 Aligned_cols=174 Identities=18% Similarity=0.135 Sum_probs=156.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+++..|+.+|.++..+|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+++++..+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+...++++.|+..+. +++...|. ....+..+|.+|..+
T Consensus 83 ~~~~~~~~~a~~~~~-----------------------------------------~a~~~~~~-~~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQ-----------------------------------------RAIALNTV-YADAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHHH-----------------------------------------HHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-----------------------------------------HHHHhCcc-chHHHHHHHHHHHHh
Confidence 988888887777664 44555665 355667799999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
|++++|++.|+++++++|.+ ..+|+.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 121 g~~~~A~~~~~~~l~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPGF--------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCchhHHHHHHHHHHhcchh--------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999999999999998 889999999999999999999999999999987654
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=4.5e-21 Score=204.94 Aligned_cols=319 Identities=9% Similarity=-0.020 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHCCCHHHHH-----------HHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAAFR--SNR--AAALTGLGRIGEAV-----------KEC 299 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~ 299 (714)
.+.......+....+...+++++|..+++++.+.-+ .+...+ +.+ .......++++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 344556667777788899999999999999876432 244333 222 23333445555555 555
Q ss_pred HHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Q 005108 300 EEAVRLDPNYWR------AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALRE 373 (714)
Q Consensus 300 ~~al~~~p~~~~------a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~ 373 (714)
+++-. .+.... .++.+|.++...|++++|+.+|++++...... .........+..++.++...|++++|+.+
T Consensus 88 ~~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 88 LEIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55432 333322 44559999999999999999999998731110 01123456788899999999999999999
Q ss_pred HHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 374 GDAAIAAGADFS------PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 374 ~~~al~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
++++++..+... ...+..+|.+|..+|++++|+.+|++++++.+... +....+.++..+|.+|..+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHC
Confidence 999998855332 35677899999999999999999999998765431 1123366899999999999
Q ss_pred CcHHHHHHHHHHHhcc-----C-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-----CCCHHH
Q 005108 448 GRFENAVTAAEKAGQI-----D-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-----PSNSVL 516 (714)
Q Consensus 448 g~~~~A~~~~~~al~~-----~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 516 (714)
|++++|+.+|++++++ + |....++.. +|.++...|++++|+.+|++++++. +.....
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFL------------ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHH------------HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999983 4 555455544 4999999999999999999999873 333444
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 517 YCNRAACWFKLGQ---WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 517 ~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+..++.+|...|+ +++|+..+++. ...+....++..+|.+|..+|++++|+++|++++++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999 88888888876 33444567889999999999999999999999988653
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=4.8e-20 Score=181.54 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=149.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
+.++..++.+|..++..|+|++|+.+|+++++.+| .+..+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45779999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS------PQLSMC 391 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~ 391 (714)
.+|..+|++++|+..|++++. .+|+.. ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~-----------------------------------------~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK-----------------------------------------AVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----------------------------------------HSTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----------------------------------------HCCCcHHHHHHHHHHHHH
Confidence 999999999998888866653 333321 123445
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
+|.++...|++++|+..|+++++++|+ + ..+++.+|.++...| ...++++..+.+.+..
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~ 183 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSKKWK--------------TDALYSLGVLFYNNG-----ADVLRKATPLASSNKE 183 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCHHHH--------------HHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCCccc--------------HHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHH
Confidence 666666666777777777666666666 4 556666666665443 2334455555444433
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
.+. +......+.+++|+.+|+++++++|++..++..++.+
T Consensus 184 ~~~--------------~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 184 KYA--------------SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHH--------------HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 221 2222233344455555555555555544444444433
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=3.8e-20 Score=191.47 Aligned_cols=231 Identities=12% Similarity=-0.004 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC------
Q 005108 293 GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD------ 366 (714)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~------ 366 (714)
++|+..|+++++.+|+++.+|+.+|..+...++. +...|+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------------------------------l~~~g~~~~~~~ 78 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------------------------------LAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------------HHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------------------------------hhhccchhhccc
Confidence 7899999999999999999999999998754321 112233
Q ss_pred -HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH-HHHHHHHH
Q 005108 367 -WKSALREGDAAIA-AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY-TFFVRAQI 443 (714)
Q Consensus 367 -~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~la~~ 443 (714)
+++|+..|+++++ ++|+ ...+|..++.++...|++++|...|+++++++|.+ .. +|..++.+
T Consensus 79 ~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~~~~ 143 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--------------PTLVYIQYMKF 143 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--------------THHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--------------ccHHHHHHHHH
Confidence 4788888899998 5776 56778889999999999999999999999999987 43 89999999
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh-hCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
+...|++++|+..|+++++..|....++... +.... ..|++++|+.+|+++++.+|+++.+|..++.
T Consensus 144 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~------------a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDARTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999999999999999999987776533 44433 3799999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLI---QPN-YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
.+.++|++++|+..|+++++. .|+ ...+|..++..+...|++++|...++++++.+|++.+.
T Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 212 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999995 553 78899999999999999999999999999999986543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=2.1e-20 Score=189.10 Aligned_cols=231 Identities=13% Similarity=0.012 Sum_probs=188.9
Q ss_pred HHHHCCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHH
Q 005108 285 ALTGLGRIGEAVKECEEAVRLD----PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360 (714)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~ 360 (714)
.+...|++++|+..|+++++.. |.+..+++.+|.++...|++++|+..|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--------------------------- 66 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF--------------------------- 66 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------------------
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHH---------------------------
Confidence 3344567777777777777763 344566666666666666666665555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
+++++.+|. ....+..+|.+|...|++++|+.+|+++++.+|.+ ..++..+
T Consensus 67 --------------~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l 117 (275)
T 1xnf_A 67 --------------SQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------NYAHLNR 117 (275)
T ss_dssp --------------HHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------THHHHHH
T ss_pred --------------HHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------------cHHHHHH
Confidence 555666776 45677789999999999999999999999999998 7789999
Q ss_pred HHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHH
Q 005108 441 AQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNR 520 (714)
Q Consensus 441 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 520 (714)
|.++...|++++|+.+|+++++++|++......+ ..+...|++++|+..|++++...|.+...+. +
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-------------YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-I 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-H
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-------------HHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-H
Confidence 9999999999999999999999999998655433 2346669999999999999999988866654 7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLIQPN----YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
+.++...+++++|+..++++++..|. +..+++.+|.+|..+|++++|+.+|+++++++|++....
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 88888999999999999999887664 368999999999999999999999999999999775433
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=201.00 Aligned_cols=255 Identities=14% Similarity=0.067 Sum_probs=174.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--- 305 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 305 (714)
-+|..+..+..+|..++..|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 306 -----DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 306 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
.|....++..+|.+|...|++++|+.+|++++. .+++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------------------------------~~~~~~~~ 147 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGK 147 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----------------------------------HHHHhcCC
Confidence 355678899999999999999999999877642 11111001
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccC--------CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH
Q 005108 381 GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKI--------EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN 452 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 452 (714)
++......+..+|.++...|++++|+.+|+++++. .|. ...++..+|.++...|++++
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN--------------VAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH--------------HHHHHHHHHHHHHHHTCHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHHHcCCHHH
Confidence 11112345666888888889999999888888876 222 26789999999999999999
Q ss_pred HHHHHHHHhccCCC---------CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPR---------NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 453 A~~~~~~al~~~p~---------~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
|+.+|+++++..+. ....+... ..+...+..+...+.+.+|+..+++++...|....++..+|.+
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKPIWMHA------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCHHHHH------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHH------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 99999999975332 11111111 1112223344444555555555555555555555555556666
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC
Q 005108 524 WFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p 545 (714)
|..+|++++|+++|++++++.|
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHhh
Confidence 6666666666666665555544
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=5.4e-21 Score=218.30 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....+.++|.+|.++|++++|+++|+++++++|++ ..+++++|.+|..+|++++|++.|+++++++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--------------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35677889999999999999999999999999998 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|++..++..+ |.++..+|++++|+++|+++++++|++..+|+++|.+|.++|++++|++.|+++++++
T Consensus 74 P~~~~a~~nL------------g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 74 PTFADAYSNM------------GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998876 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
|++..++.++|.+|..+|++++|++.|++++++.|+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999987553
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=3.4e-21 Score=207.53 Aligned_cols=275 Identities=15% Similarity=0.072 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW----RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV 350 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 350 (714)
....++.+|.++...|++++|+..|+++++++|++. .++..+|.+|...|++++|+.+|++++..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------- 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 355677899999999999999999999999999986 58999999999999999999999877520
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
....++. ......+..+|.+|...|++++|+.+|++++++.+.. ...
T Consensus 116 ----------~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~ 162 (411)
T 4a1s_A 116 ----------AKSMNDR---------------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--------GDR 162 (411)
T ss_dssp ----------HHHTTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCH
T ss_pred ----------HHHccCc---------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------hch
Confidence 0000110 0113345567888888888888888888877653221 011
Q ss_pred hhhHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC
Q 005108 431 LSEAYTFFVRAQIEMALGR-----------------FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~ 493 (714)
.....++..+|.++...|+ +++|+.++++++++.+..... ......+..+|.++...
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR------GAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHc
Confidence 1236789999999999999 999999999988753211000 00112233559999999
Q ss_pred cCHHHHHHHHHHhhccCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Q 005108 494 ERFTEACQAYGEGLRFDPSNS------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAASNSKL 561 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 561 (714)
|++++|+.+|++++++.+... .++.++|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|..+
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999866443 389999999999999999999999999987643 67899999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhc
Q 005108 562 EKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 562 g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~~~ 599 (714)
|++++|+.+|++++++.+.. ..++..+..++..+++..
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999886532 335566666666655443
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=199.92 Aligned_cols=252 Identities=15% Similarity=0.041 Sum_probs=185.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 272 APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 97 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA----- 97 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4566889999999999999999999999999985 666788999999999999999999999877642
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CC
Q 005108 344 EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PS 418 (714)
Q Consensus 344 ~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~ 418 (714)
.+++....+.......+..+|.+|...|++++|+.+|++++++. +.
T Consensus 98 -----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 98 -----------------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp -----------------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -----------------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111111123456668888888888888888888887763 22
Q ss_pred CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHH
Q 005108 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDL 490 (714)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~ 490 (714)
+ .....++..+|.++...|++++|+.+|++++++ .|....++. .+|.++
T Consensus 149 ~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~la~~~ 205 (311)
T 3nf1_A 149 H-----------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN------------NLASCY 205 (311)
T ss_dssp C-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH------------HHHHHH
T ss_pred C-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH------------HHHHHH
Confidence 1 123678999999999999999999999999987 333333343 349999
Q ss_pred hhCcCHHHHHHHHHHhhccCC---------CC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDP---------SN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
...|++++|+.+|+++++..+ .. ...+..++..+...+.+.+|+..+++++...|....++..+|
T Consensus 206 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la 285 (311)
T 3nf1_A 206 LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLG 285 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 999999999999999997532 22 344445556666777888888999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|..+|++++|+++|++++++.|+
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998775
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=2.8e-20 Score=193.26 Aligned_cols=272 Identities=17% Similarity=0.094 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
...++..|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+.+|++++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 72 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 72 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 3467788999999999999999999999999988 478889999999999999999999877520
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
....++. ......+..+|.+|...|++++|+.++++++++.+... ...
T Consensus 73 ---------~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~ 120 (338)
T 3ro2_A 73 ---------ARTIGDQ---------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------DKV 120 (338)
T ss_dssp ---------HHHHTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHH
T ss_pred ---------hhccccc---------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------Cch
Confidence 0000110 01133455688888888888888888888877655431 111
Q ss_pred hhHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh
Q 005108 432 SEAYTFFVRAQIEMALGR--------------------FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF 491 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~ 491 (714)
....++..+|.++...|+ +++|+.++++++.+.+..... ......+..+|.++.
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR------AAQGRAFGNLGNTHY 194 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHH
Confidence 236688999999999999 999999999988652211000 001122335699999
Q ss_pred hCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 005108 492 KSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAASNS 559 (714)
Q Consensus 492 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 559 (714)
..|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999875433 3489999999999999999999999999876654 678899999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhh
Q 005108 560 KLEKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKK 597 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~ 597 (714)
.+|++++|+.+|++++++.+.. ..+...+..++...++
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999886533 2345556666555544
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=2.7e-20 Score=212.53 Aligned_cols=174 Identities=22% Similarity=0.266 Sum_probs=157.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|+++++++++|.+|.++|++++|+.+|+++++++|++..+|+++|.+|.++|++++|+..|+++++++|++..+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.+|..+|++++|++.| +++++++|+ ....+.++|.+|
T Consensus 84 g~~l~~~g~~~~A~~~~-----------------------------------------~kAl~l~P~-~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCY-----------------------------------------TRAIQINPA-FADAHSNLASIH 121 (723)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCC-CHHHHHHHHHHH
Confidence 99999988888887766 455666776 456677899999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+|++++|++.|+++++++|++ ..++..+|.++..+|++++|++.+++++++.|+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~~--------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPDF--------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999999999999998 888999999999999999999999999876554
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=6e-19 Score=192.51 Aligned_cols=298 Identities=14% Similarity=0.031 Sum_probs=232.0
Q ss_pred cHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHhcCCCcHHH
Q 005108 241 DAEELKRMGNELYRKG-----CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEA---VKECEEAVRLDPNYWRA 312 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g-----~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~a 312 (714)
++.+++.+|.+++..+ ++++|+.+|+++++.+ ++.+++.+|.+|...+..+++ ++.+.++.. +.+..+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a 143 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEA 143 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHH
Confidence 7888899999777766 8889999999998854 445888999999887765444 444444433 345778
Q ss_pred HHHHHHHHHHcCCHHHHHHH----HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC---CHHHHHHHHHHHHHcCCCCC
Q 005108 313 HQRLGSLLVRLGQVENARRH----LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG---DWKSALREGDAAIAAGADFS 385 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~----~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g---~~~~Al~~~~~al~~~p~~~ 385 (714)
++.+|.+|...+.+++++.. +..+.. .++. .++.++.++...| ++++|+..|+++.+.++..
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~- 212 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT- 212 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-
Confidence 99999999998855544444 444432 2332 3556677788899 9999999999999999874
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH-H--HHhCcHHHHHHHHH
Q 005108 386 PQLSMCRVEALLKL----HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI-E--MALGRFENAVTAAE 458 (714)
Q Consensus 386 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 458 (714)
...++.+|.+|... +++++|+.+|+++. |.+ ..+++.+|.+ + ...+++++|+.+|+
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY--------------PASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--------------THHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 45456699999766 79999999999998 666 6789999998 4 56899999999999
Q ss_pred HHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-----CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCC
Q 005108 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-----RFTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQ 529 (714)
Q Consensus 459 ~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 529 (714)
++.+.. ++.+++.+ |.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..+
T Consensus 276 ~Aa~~g--~~~A~~~L------------g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 276 NGRAAD--QPRAELLL------------GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHTT--CHHHHHHH------------HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHCC--CHHHHHHH------------HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcC
Confidence 998654 77777766 88887 45 9999999999999 8899999999999987 449
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+++|+.+|+++.+ ..++.+++++|.+|.. ..++++|+.+|+++.+.. ++.....+..+.
T Consensus 338 ~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~ 400 (452)
T 3e4b_A 338 PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLE 400 (452)
T ss_dssp HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 9999999999986 4567899999999985 469999999999998865 455555555443
No 68
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=2.4e-18 Score=175.23 Aligned_cols=254 Identities=9% Similarity=0.000 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCF-GEALSMYDKAISLAPRNAAFRSNRAAALTGLG--RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
-...+.......+.|++ ++|+.+++++|.++|++..+|+.++.++..++ ++++++..+++++..+|++..+|+..+.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 34445555566677776 68999999999999999999999999999999 9999999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++.+... . ....+++++++..++++++.+|.+ ..+|..++.++..
T Consensus 112 iL~~~~~---------~-------------------------l~~~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~ 156 (306)
T 3dra_A 112 IIGQIME---------L-------------------------NNNDFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDT 156 (306)
T ss_dssp HHHHHHH---------H-------------------------TTTCCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHH---------h-------------------------ccccCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 8732100 0 000145667777778888888874 5666668999999
Q ss_pred cCCHH--HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc------HHHHHHHHHHHhccCCCCHHH
Q 005108 399 LHQLE--DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR------FENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 399 ~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~ 470 (714)
.+.++ +++++++++++.+|.+ ..+|..++.++...++ ++++++++++++..+|++..+
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N--------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKN--------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 99888 9999999999999998 7889999998888887 888888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHH-HHHHHHHhhccC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCC
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTE-ACQAYGEGLRFD---PSNSVLYCNRAACWFKLGQWERSVEDSNQALL-IQP 545 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p 545 (714)
|..+ +.++.+.|+..+ ...+++++++++ +.++.++..++.+|.+.|+.++|+++|+.+.+ ++|
T Consensus 223 W~y~------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 223 WNYL------------LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHH------------HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHH------------HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 8766 666777776444 445677777665 77788888888888888888888888888886 788
Q ss_pred CCHHHHHHHHH
Q 005108 546 NYTKALLRRAA 556 (714)
Q Consensus 546 ~~~~~~~~la~ 556 (714)
-....|..++.
T Consensus 291 ir~~yW~~~~~ 301 (306)
T 3dra_A 291 IRSNFWDYQIS 301 (306)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777766654
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=2.9e-19 Score=183.24 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 468 (714)
.++|.+|..+|++++|+.+|++++++.+... .....+.++..+|.+|... |++++|+.+|++++++.|...
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555443320 0111255788899999996 999999999999998877542
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV-------LYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
.... ....+..+|.++...|++++|+.+|++++++.|++.. +++++|.++..+|++++|+.+|++++
T Consensus 153 ~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 153 SVAL------SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp CHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred ChHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1100 0111234599999999999999999999999887643 68899999999999999999999999
Q ss_pred HhCCCCHHH-----HHHHHHHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 542 LIQPNYTKA-----LLRRAASNS--KLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 542 ~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+++|++... +..++..+. ..+++++|+..|+++++++|.+..+...+.
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 999987643 445566664 567899999999999888876654444433
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-19 Score=193.06 Aligned_cols=250 Identities=10% Similarity=-0.024 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEEAVRL---DP---NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
.++.+|.++...|++++|+..|++++++ .+ ....++..+|.+|..+|++++|+.++.+++..............
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 22 34689999999999999999999999999871111111123345
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFS-----PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 426 (714)
..+..++.++...|++++|+..|+++++..+... ...+.++|.+|..+|++++|+.+|++++++.....
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~------ 258 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN------ 258 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence 6788899999999999999999999998854322 24677899999999999999999999998421110
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC---HHHHHH
Q 005108 427 FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER---FTEACQ 501 (714)
Q Consensus 427 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~---~~~A~~ 501 (714)
.......++..+|.++..+|++++|+.++++++++.+. +...... +..+|.++...|+ +++|+.
T Consensus 259 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 259 --ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE---------FEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH---------HHHHHHHHTSSCCHHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHhCCCcHHHHHHHHH
Confidence 00012778999999999999999999999999987432 2222211 1235999999999 889999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 502 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
.+++. ...+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 328 ~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 328 FLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99887 44445577899999999999999999999999998643
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=3.6e-18 Score=181.46 Aligned_cols=285 Identities=14% Similarity=0.016 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------H
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY------W 310 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 310 (714)
...+..+|..++..|++++|+.++++++...|.+. .++..+|.++...|++++|+..+++++++.+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 36677889999999999999999999999877552 267788999999999999999999998875432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC-C--CCCHH
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG-A--DFSPQ 387 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~-p--~~~~~ 387 (714)
.++..+|.++...|++++|+.+|++++. ... ... + .....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------------------~~~---~~~~~~~~~~~~ 136 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------------------LIN---EQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHH---HTTCTTSTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHH---HhccccCcHHHH
Confidence 3467788888888888888887766542 000 000 0 01233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR- 466 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 466 (714)
.+..+|.++...|++++|+.++++++...+.... .....++..+|.++...|++++|+.++++++.+.+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 4556889999999999999999999887775411 012467889999999999999999999999876332
Q ss_pred -CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 467 -NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 467 -~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
....+.... ...++.++...|++++|..++++++...+.. ...+..++.++...|++++|+..+++++
T Consensus 208 ~~~~~~~~~~-------~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 208 KYHSDWISNA-------NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp CCCHHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcchhHHHHH-------HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222221110 0123566889999999999999999887653 3457889999999999999999999998
Q ss_pred HhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 542 LIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 542 ~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
...+. ...++..++.++..+|++++|...|++++++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 281 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 86432 235788999999999999999999999998754
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=9.2e-19 Score=165.10 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP 465 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 465 (714)
..++..+|.++...|++++|+..++++++.+|.+ ..++..+|.++...|++++|+.+++++++..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--------------VDVALHLGIAYVKTGAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566779999999999999999999999999988 78899999999999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
++..++..+ |.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 74 ~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 74 DNVKVATVL------------GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp TCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 999888766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
++..++..+|.++..+|++++|+.+|+++++++|++.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999999999999988764
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=3.2e-19 Score=204.65 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=152.0
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAI--------SLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (714)
.++|+++..++..+ +..|++++|++.|++++ +.+|++..+++.+|.+|..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
++..+|+.+|.+|..+|++++|+..| +++++++|++ ..
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~l~P~~-~~ 502 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHF-----------------------------------------TEVLDTFPGE-LA 502 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHSTTC-SH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCCC-hH
Confidence 99999999999998888887777666 4555666764 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+.++|.+|..+|++++ +..|+++++++|++ ..+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGV--------------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--------------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 45568888888888888 88888888888877 6677888888888888888888888888888877
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
..++..+ |.++...++
T Consensus 568 ~~a~~~~------------~~~~~~~~~ 583 (681)
T 2pzi_A 568 TTARLTS------------AVTLLSGRS 583 (681)
T ss_dssp HHHHHHH------------HHHTC----
T ss_pred HHHHHHH------------HHHHHccCC
Confidence 7777655 666666444
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=9.4e-19 Score=186.56 Aligned_cols=307 Identities=10% Similarity=-0.046 Sum_probs=225.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HCCCHHHHH---------HHHHHHHhcCCC-----
Q 005108 250 NELYRKGCFGEALSMYDKAISLAP---RNAAFRSNRAAALT----GLGRIGEAV---------KECEEAVRLDPN----- 308 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~p~----- 308 (714)
..+...+++++|..+++++..... .+....+......+ ..+.+..+. ..++++-.....
T Consensus 20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 99 (378)
T 3q15_A 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL 99 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence 344789999999999998866422 34444322222211 122222222 444443221111
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---- 384 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---- 384 (714)
....++.+|..+...|++++|+.+|++++...... .........+..++.++...|++++|+.++++++...+..
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 12367789999999999999999999998732110 0113456778889999999999999999999999875431
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 385 --SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 385 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
....+..+|.+|..+|++++|+.+|++++++.+.. ......+.++..+|.+|..+|++++|+.+|++++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24466789999999999999999999999865432 11113467899999999999999999999999998
Q ss_pred -----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCC---
Q 005108 463 -----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP-----SNSVLYCNRAACWFKLGQ--- 529 (714)
Q Consensus 463 -----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--- 529 (714)
.+|....++.. +|.++...|++++|+.+|++++++.+ .....+..++.+|...++
T Consensus 251 ~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 251 VSREKVPDLLPKVLFG------------LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHCGGGHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHhhCChhHHHHHHH------------HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 56655555544 49999999999999999999999743 335566778888988998
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
+.+|+..+++. ...+....++..+|.+|..+|++++|+.+|++++++.
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88888888872 2334445788899999999999999999999998653
No 75
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.81 E-value=4.2e-20 Score=156.86 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=92.6
Q ss_pred eeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.+.++|...+.. +.+++|+|||+||++|+.+.|.++++...++++.|++||+|+++++++.|+|+++||+++|++
T Consensus 3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 346667788877743 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhhc
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
|+++.++.|.+.++|+++|+++.
T Consensus 83 G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 83 GQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHC
T ss_pred CEEEEEEeCcCHHHHHHHHHhcC
Confidence 99999999999999999999873
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=1.7e-18 Score=174.35 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---H
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---W 310 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 310 (714)
+.+.++..++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.+|..+|++++|+..|+++++..|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 567777888888888888888888888888888877777 7777888888888888888888888888777644 3
Q ss_pred HHHHHHHHHHHH
Q 005108 311 RAHQRLGSLLVR 322 (714)
Q Consensus 311 ~a~~~la~~~~~ 322 (714)
.+++.+|.++..
T Consensus 90 ~a~~~lg~~~~~ 101 (261)
T 3qky_A 90 QAEYERAMCYYK 101 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=3e-18 Score=172.51 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....++.+|..++..|++++|+..|+++++.+|.+. ....+++.+|.++..+|++++|+..|+++++..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-----------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-----------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 566777799999999999999999999999999862 125689999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCHHHH-----------------HH
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNSVLY-----------------CN 519 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 519 (714)
|+++.....+ ..+|.+++. .|++++|+..|+++++.+|++..++ +.
T Consensus 83 p~~~~~~~a~---------~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 83 QIDPRVPQAE---------YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp TTCTTHHHHH---------HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHH---------HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8764322222 134999999 9999999999999999999986655 88
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 520 RAACWFKLGQWERSVEDSNQALLIQPN---YTKALLRRAASNSKL----------EKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+|.+|.++|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++.+|+++.+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 999999999999999999999999998 568999999999987 9999999999999999999965544
Q ss_pred ---HHHHHHHHhhhh
Q 005108 587 ---SLFHAQVSLKKS 598 (714)
Q Consensus 587 ---~L~~~~~~l~~~ 598 (714)
.+..+...+++.
T Consensus 234 a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 234 AEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555443
No 78
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.81 E-value=4.8e-20 Score=162.84 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=92.1
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.+.++|++.+ ...++++|+|||+||++|+++.|.|+++++++++ +.|++||+|+.++++..|+|+++|||++|
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 55677888898766 3578999999999999999999999999999976 99999999999999999999999999999
Q ss_pred eCCeEE--E-------EEcCC-C-HHHHHHHHhhh
Q 005108 689 KNGSRM--K-------EIVCP-S-RDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~--~-------~~~g~-~-~~~l~~~~~~~ 712 (714)
++|+.+ + +++|+ + +++|++.|+.+
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999998 5 89999 5 99999998864
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=2.4e-17 Score=190.97 Aligned_cols=302 Identities=12% Similarity=0.077 Sum_probs=212.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR----N--AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~----~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.+++..-...+.|...|.+.+|+++|++++ ++|. + ......+..+....++..+.+..++..+ .
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---------~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD---------A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---------H
Confidence 466777778889999999999999999999 4454 2 2233333333333333333333333211 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..+|.++..+|++++|...|+++....+. ....+...++|++|+++++++ ..+.+|..+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A--------------~~VLie~i~nldrAiE~Aerv------n~p~vWsqLA 1112 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSA--------------VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLA 1112 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHH--------------HHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHH
Confidence 33788888888888888888886310000 011133667788888877765 2466777788
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---H--
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---V-- 468 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~-- 468 (714)
.++...|++++|+..|.++ ++ ...|..++.++.+.|++++|+++|+.+.+..++. .
T Consensus 1113 KAql~~G~~kEAIdsYiKA-----dD--------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA-----DD--------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc-----CC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 8888888888888888775 33 4567778888888888888888888877766442 0
Q ss_pred -HHHHHHHhHHH---------HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 469 -EVAVLLNNVKL---------VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 469 -~~~~~l~~l~~---------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
..+..+..+.. ...+...|..++..|+|++|+.+|.++ ..|..++.+|.++|++++|++.++
T Consensus 1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11111111111 123456799999999999999999986 478999999999999999999999
Q ss_pred HHHHhCC-------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 539 QALLIQP-------------------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 539 ~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
++....+ .+++.+..++..|.+.|.|++|+.++++++.+++.+..+...|..++.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 8854332 234556678888999999999999999999999999999888887765
Q ss_pred Hhhhh
Q 005108 594 SLKKS 598 (714)
Q Consensus 594 ~l~~~ 598 (714)
..+..
T Consensus 1326 Ky~pe 1330 (1630)
T 1xi4_A 1326 KFKPQ 1330 (1630)
T ss_pred hCCHH
Confidence 55433
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=2.1e-19 Score=206.18 Aligned_cols=216 Identities=16% Similarity=0.095 Sum_probs=181.4
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhh
Q 005108 362 RKVGDWKSALREGDAAI--------AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSE 433 (714)
Q Consensus 362 ~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 433 (714)
...+++++|++.|++++ +.+|+.. ..+..+|.+|..+|++++|+..|+++++.+|++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV-ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-------------- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------------
Confidence 67899999999999999 8888754 556679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..+|+.+|.++..+|++++|++.|+++++++|++..++..+ |.++...|++++ +.+|+++++++|++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL------------AATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH------------HHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 88999999999999999999999999999999999998876 999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCCCHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK--------WADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~eA~~~~~~al~~~p~~~~~~ 585 (714)
..+|+++|.+|.++|++++|++.|+++++++|++..+++++|.++...++ +++|.+.++++....|....+.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~ 613 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIR 613 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999977555 4555544444333334444445
Q ss_pred HHHHHHHHHhhhhccccccc
Q 005108 586 ESLFHAQVSLKKSRGEEVYN 605 (714)
Q Consensus 586 ~~L~~~~~~l~~~~~~~~~~ 605 (714)
..+......+......++++
T Consensus 614 ~~ll~~~l~~~~~~~~~~~~ 633 (681)
T 2pzi_A 614 ALVLGGALDWLKDNKASTNH 633 (681)
T ss_dssp HHHHHHHHHHHTSCCCSSSE
T ss_pred HHHHHHHHHHHHccCCCCcc
Confidence 55555444555555555443
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=1.1e-19 Score=166.43 Aligned_cols=143 Identities=7% Similarity=0.008 Sum_probs=129.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
.||.++...|++++|++.+++++..+|+++..++.+ |.+|++.|+|++|+++|+++++++|+++.+|+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~l------------a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYF------------AKLYYEAKEYDLAKKYICTYINVQERDPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 367888899999999999999999999888887766 99999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD-FEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|.++|++++|.+. ++++++++|+++.++..+.++..
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887776 59999999999999887766544
No 82
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.2e-17 Score=170.10 Aligned_cols=231 Identities=11% Similarity=-0.005 Sum_probs=202.7
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHH
Q 005108 291 RIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG--QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWK 368 (714)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~ 368 (714)
..++|+..++++|.++|++..+|+..+.++..++ ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~e---------------------------------------- 87 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYD---------------------------------------- 87 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHH----------------------------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHH----------------------------------------
Confidence 3468999999999999999999999999988777 4444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEAL----LKL---HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA 441 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la 441 (714)
++..+++++..+|.+.. +|..++.++ ... +++++++.++.++++.+|.+ ..+|..++
T Consensus 88 -eL~~~~~~L~~nPk~y~-aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--------------y~aW~~R~ 151 (306)
T 3dra_A 88 -ELDWCEEIALDNEKNYQ-IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--------------HHVWSYRK 151 (306)
T ss_dssp -HHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC--------------HHHHHHHH
T ss_pred -HHHHHHHHHHHCcccHH-HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHH
Confidence 45555677788888554 445577777 666 78999999999999999999 89999999
Q ss_pred HHHHHhCcHH--HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC------HHHHHHHHHHhhccCCCC
Q 005108 442 QIEMALGRFE--NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER------FTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 442 ~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~------~~~A~~~~~~al~~~p~~ 513 (714)
.++...++++ +++++++++++.+|.|..+|... +.++...++ ++++++++++++..+|.|
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R------------~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR------------FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999998 99999999999999999999865 888888887 999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCCHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWER-SVEDSNQALLIQ---PNYTKALLRRAASNSKLEKWADAVRDFEVLRR-ELPDDNEIAESL 588 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~L 588 (714)
..+|+.++.++.+.|+..+ ....++++++++ |.+..++..++.+|.+.|+.++|+++|+.+.+ .+|-....+...
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999998555 556778887776 88999999999999999999999999999997 899988887755
Q ss_pred H
Q 005108 589 F 589 (714)
Q Consensus 589 ~ 589 (714)
.
T Consensus 300 ~ 300 (306)
T 3dra_A 300 I 300 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1e-18 Score=169.46 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
.+.+|.++...|++++|+..|+++++++|++..++..+ |.++...|++++|+.+|+++++++|+++.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34499999999999999999999999999999998876 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQ--WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 517 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
|+++|.+|...|+ .+.+...|++++...|. ..+++.+|.++..+|++++|+.+|+++++++|+. +....|.++
T Consensus 125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 9999999987764 55677888887654332 3578889999999999999999999999999974 455555554
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=4.9e-17 Score=188.35 Aligned_cols=269 Identities=16% Similarity=0.076 Sum_probs=182.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
..+++++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ ++...|..++.++.+.|+|++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777755 55778888888888888888888888765 66777888888888888888888888
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc
Q 005108 334 CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413 (714)
Q Consensus 334 ~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (714)
..+.+....... ...++.+|.+.+++++ ++.|. ..+. . .-+..+|..+...|+|++|+.+|.++
T Consensus 1158 ~mArk~~~e~~I--------dt~LafaYAKl~rlee-le~fI----~~~n-~-ad~~~iGd~le~eg~YeeA~~~Y~kA- 1221 (1630)
T 1xi4_A 1158 QMARKKARESYV--------ETELIFALAKTNRLAE-LEEFI----NGPN-N-AHIQQVGDRCYDEKMYDAAKLLYNNV- 1221 (1630)
T ss_pred HHHHhhcccccc--------cHHHHHHHHhhcCHHH-HHHHH----hCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhh-
Confidence 777652211110 0113444555566553 33331 1121 2 23334666677777777777666664
Q ss_pred cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH----------------
Q 005108 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV---------------- 477 (714)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l---------------- 477 (714)
. .|..++.+|.++|++++|++.++++.. ..+|......
T Consensus 1222 ----~-----------------ny~rLA~tLvkLge~q~AIEaarKA~n-----~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1222 ----S-----------------NFGRLASTLVHLGEYQAAVDGARKANS-----TRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred ----h-----------------HHHHHHHHHHHhCCHHHHHHHHHHhCC-----HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 1 366666666666677777776666632 2333211100
Q ss_pred --HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CCH
Q 005108 478 --KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK--LGQWERSVEDSNQALLIQP-----NYT 548 (714)
Q Consensus 478 --~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~ 548 (714)
...+.+..++..|...|.|++|+.+|++++.+++.+...+..+|.+|.+ -++..++++.|...+.+.+ ++.
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 0112334558889999999999999999999999999999888887765 5678889999998888777 678
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
..|..+..+|.+-|+|+.|+..+-+.
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 88999999999999999999544443
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=1.7e-18 Score=184.54 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH
Q 005108 277 AFRSNRAAALTGLGRIGEAVKECEEAVRLDP------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV 350 (714)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 350 (714)
.+++.+|..+...|++++|+..|++++++.+ ....++..+|.+|..+|++++|+.++++++.............
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3677889999999999999999999998732 3477999999999999999999999999986211110011234
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc-----CCCCCC
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPK-----IEPSTV 420 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~ 420 (714)
...+..+|.++...|++++|+.+|+++++..+ ......+.++|.+|..+|++++|+.+|+++++ .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~- 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL- 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence 56788899999999999999999999998733 22345677899999999999999999999998 55543
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC---
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER--- 495 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~--- 495 (714)
..++..+|.++..+|++++|+.++++++++.+. +......+ ..++.++...++
T Consensus 261 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 261 -------------PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF---------LFLQAVYKETVDERK 318 (378)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH---------HHHHHHHSSSCCHHH
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH---------HHHHHHHhCCCcHHH
Confidence 778999999999999999999999999987543 22111111 124788888888
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
+.+|+.++++. ...+....++..+|.+|...|++++|+.+|++++++.
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88999998873 3344456788899999999999999999999998753
No 86
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.79 E-value=1.4e-19 Score=157.82 Aligned_cols=94 Identities=11% Similarity=0.202 Sum_probs=86.6
Q ss_pred hHHhhhccCCC-ceEEEeecCCC--ccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASN--LHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c--~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++|...+...+ +++|+||++|| ++|+++.|.|+++..+|. .+.|++||+|++++++.+|+|++|||+++||||+.+
T Consensus 23 ~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~v 102 (137)
T 2qsi_A 23 ATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTL 102 (137)
T ss_dssp TTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEEE
T ss_pred hHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 56766665554 99999999999 999999999999999996 599999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.+++|+ +.++|+++|+++
T Consensus 103 ~~~vG~~~k~~l~~~l~~~ 121 (137)
T 2qsi_A 103 GVIAKIQDWSSYLAQIGAM 121 (137)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999999865
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=2.6e-19 Score=163.81 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=134.7
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+|.++...|++++|+..+++++..+|++ ...++.+|.+|+..|++++|+++|+++++++|++..+|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~--------------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~ 68 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK--------------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH 68 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH--------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6888889999999999999999998887 67889999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCCHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED-SNQALLIQPNYTKA 550 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~ 550 (714)
..+ |.++...|++++|+.+|+++++++|+++.+++++|.+|.++|++++|.+. ++++++++|+++.+
T Consensus 69 ~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 69 RFL------------GLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHH------------HHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 877 99999999999999999999999999999999999999999999887776 59999999999999
Q ss_pred HHHHHHHHHHhcc
Q 005108 551 LLRRAASNSKLEK 563 (714)
Q Consensus 551 ~~~la~~~~~~g~ 563 (714)
+..++.++...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999988875
No 88
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=99.78 E-value=2.3e-19 Score=157.11 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=87.9
Q ss_pred hhHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+...++++|+||++| |++|+++.|.|+++..+|+ . +.|++||+|++++++.+|+|++|||+++||||+.
T Consensus 24 ~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~ 103 (140)
T 2qgv_A 24 ESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNY 103 (140)
T ss_dssp HHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEE
T ss_pred HHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE
Confidence 3677777766778999999999 9999999999999999996 4 8999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+++|. +.++|+++|+++
T Consensus 104 v~~~~G~~~k~~l~~~i~~~ 123 (140)
T 2qgv_A 104 RGVLNGIHPWAELINLMRGL 123 (140)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHH
Confidence 9999999 999999999875
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=2e-17 Score=160.42 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHh
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSN----------------RAAALTGLGRIGEAVKECEEAVR 304 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 304 (714)
+++.++..|..++..|++++|+.+|+++++.+|+++.+|+. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 305 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
++|++..+++.+|.++...|++++|+..| +++++++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~~~P~~ 121 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMY-----------------------------------------EKILQLEADN 121 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHCTTC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHcCCCC
Confidence 99999999999999998888888777766 5566777774
Q ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 385 SPQLSMCRVEALLKLHQ--LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
...+..+|.+|...++ .+.+...+++++...|. ...++.+|.++...|++++|+.+|+++++
T Consensus 122 -~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 122 -LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---------------QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---------------HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---------------hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667779999877654 55677888887654332 45688899999999999999999999999
Q ss_pred cCCCCH
Q 005108 463 IDPRNV 468 (714)
Q Consensus 463 ~~p~~~ 468 (714)
++|+..
T Consensus 186 l~P~~~ 191 (208)
T 3urz_A 186 RFPSTE 191 (208)
T ss_dssp TSCCHH
T ss_pred hCCCHH
Confidence 999743
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=4.3e-18 Score=150.54 Aligned_cols=120 Identities=28% Similarity=0.559 Sum_probs=111.1
Q ss_pred HhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005108 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539 (714)
Q Consensus 460 al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (714)
+..++|+..+.+. ++|..+++.|+|++|+++|+++++++|.++.+|+++|.+|.++|++++|+..|++
T Consensus 5 ~a~inP~~a~~~~------------~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 5 LAYINPELAQEEK------------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp --CCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 4456776666655 4599999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 540 ALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 540 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+++++|++..+|+.+|.+|..+|++++|++.|+++++++|++.+++..|..+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988765
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=3.2e-18 Score=173.28 Aligned_cols=230 Identities=14% Similarity=0.035 Sum_probs=163.4
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--------DPNYWRAHQRLG 317 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la 317 (714)
..|++++|+.+|+++++. +|....++..+|.+|...|++++|+..|++++++ +|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777777763 2556889999999999999999999999999977 366688999999
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...|++++|+.+|++++. .+++....+.......+..+|.+|.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH----------------------------------HHHHHcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999877642 1111111110112345667888888
Q ss_pred HcCCHHHHHHHhhccccC--------CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc------
Q 005108 398 KLHQLEDAESSLSNIPKI--------EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI------ 463 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 463 (714)
..|++++|+.+|+++++. .|.. ..++..+|.++...|++++|+.+|++++++
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNV--------------AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888876 3332 678999999999999999999999999976
Q ss_pred ---CCCCHHHHHHHHhHHHHHHHHHHHhHHhh------CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 464 ---DPRNVEVAVLLNNVKLVARARARGNDLFK------SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 464 ---~p~~~~~~~~l~~l~~~~~~~~~g~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
.+.....+..+ +..+.. ...+.++...++......|....++..+|.+|..+|++++|+
T Consensus 205 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 205 GSVNGDNKPIWMHA------------EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp SSCCSSCCCHHHHH------------HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcchhHHHHHHHH------------HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444433 333332 334555666666655556666778888888888888888888
Q ss_pred HHHHHHHHh
Q 005108 535 EDSNQALLI 543 (714)
Q Consensus 535 ~~~~~al~~ 543 (714)
.+|++++++
T Consensus 273 ~~~~~al~~ 281 (283)
T 3edt_B 273 TLEDCASRN 281 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 888888765
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=1.7e-17 Score=169.96 Aligned_cols=239 Identities=14% Similarity=0.000 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN------YWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~ 330 (714)
++++|+.+|+++ |.+|..+|++++|+..|++++++.+. ...+|..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999887 56788899999999999999887432 2678899999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHh
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL-HQLEDAESSL 409 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~ 409 (714)
.+|++++. .+...|++..+. ..+..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~---------------------l~~~~g~~~~~a---------------~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ---------------------IFTHRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH---------------------HHHHTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHcCCHHHHH---------------HHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99887752 122334443332 2345689999996 9999999999
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~ 489 (714)
++++++.|.... ......++..+|.++..+|++++|+.+|++++++.|++....+. ....+..+|.+
T Consensus 142 ~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~lg~~ 208 (292)
T 1qqe_A 142 ELAGEWYAQDQS--------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-----LKDYFLKKGLC 208 (292)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-----HHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH-----HHHHHHHHHHH
Confidence 999988775411 11124578899999999999999999999999999887542100 00111245999
Q ss_pred HhhCcCHHHHHHHHHHhhccCCCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 490 LFKSERFTEACQAYGEGLRFDPSNSV-----LYCNRAACWF--KLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+...|++++|+.+|+++++++|.... .+..++..+. ..+++++|+..|++++.++|.+..++..+-..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999998654 3455666664 467899999999999999988776666555444
No 93
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.2e-19 Score=187.08 Aligned_cols=273 Identities=13% Similarity=0.035 Sum_probs=149.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+++..|..+|.++.+.|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44579999999999999999999999875 46678999999999999999999999999885444 7778899999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|.++|++.++.+++.. +. ...+...|..+...|.|++|+.+|.++ ..|..++.++.++
T Consensus 104 Y~Klg~l~e~e~f~~~------pn-------~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 104 LAKTNRLAELEEFING------PN-------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp -----CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHcC------Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 9999999998877742 11 126777888899999999999999976 2477799999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
|++++|++.++++ .+ ..+|.....++...|+++.|..+... +...|++.. .
T Consensus 162 g~yq~AVea~~KA-----~~--------------~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~------ 212 (449)
T 1b89_A 162 GEYQAAVDGARKA-----NS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---E------ 212 (449)
T ss_dssp TCHHHHHHHHHHH-----TC--------------HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---H------
T ss_pred ccHHHHHHHHHHc-----CC--------------chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---H------
Confidence 9999999999999 24 67899999999999999999877765 334554422 2
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CCHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK--LGQWERSVEDSNQALLIQP-----NYTKALL 552 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~ 552 (714)
+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| ++...|.
T Consensus 213 ------lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 213 ------LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred ------HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 27789999999999999999999999999999999998876 5678888888888777777 7778899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHH
Q 005108 553 RRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al 575 (714)
.+..+|.+.++|+.|+..+-+..
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHhhchHHHHHHHHHhCC
Confidence 99999999999999998665543
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=3.6e-17 Score=160.71 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR---AHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~ 314 (714)
++..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+|..+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999876 478999999999999999999999999999998754 788
Q ss_pred HHHHHHHHcC
Q 005108 315 RLGSLLVRLG 324 (714)
Q Consensus 315 ~la~~~~~~g 324 (714)
.+|.++..++
T Consensus 83 ~~g~~~~~~~ 92 (225)
T 2yhc_A 83 MRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888877654
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=5.9e-16 Score=158.32 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=145.6
Q ss_pred HHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 251 ELYRKGCFG-EALSMYDKAISLAPRNAAFRSNRAAALTGLGR----------IGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 251 ~~~~~g~~~-~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
...+.|++. +|+.++++++..+|++..+|+.++.++..+++ +++++..++.++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344677776 79999999999999999999999999988876 7899999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+..+++ .++++++..++++++.+|.+ ...|..++.++...
T Consensus 118 L~~l~~---------------------------------------~~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l 157 (331)
T 3dss_A 118 LSRLPE---------------------------------------PNWARELELCARFLEADERN-FHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHCSS---------------------------------------CCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HhccCc---------------------------------------ccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence 887763 02344555667778888874 45566688888899
Q ss_pred CC-HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHhccC
Q 005108 400 HQ-LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--------------GRFENAVTAAEKAGQID 464 (714)
Q Consensus 400 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~ 464 (714)
|. ++++++++.++++.+|.+ ..+|..++.++... +.++++++++.+++..+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N--------------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSN--------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHHCCCC--------------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 98 599999999999999999 78899999998887 56999999999999999
Q ss_pred CCCHHHHHHH
Q 005108 465 PRNVEVAVLL 474 (714)
Q Consensus 465 p~~~~~~~~l 474 (714)
|++..+|+.+
T Consensus 224 P~d~SaW~Y~ 233 (331)
T 3dss_A 224 PNDQSAWFYH 233 (331)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999999866
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=5.9e-17 Score=159.14 Aligned_cols=191 Identities=15% Similarity=0.160 Sum_probs=133.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 353 KHLSKCTDARKVGDWKSALREGDAAIAAGADFS--PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 353 ~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
.++.++..+...|++++|+..|+++++..|... ...+..+|.+|...|++++|+..|+++++.+|++..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~--------- 76 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--------- 76 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---------
Confidence 455556666666666666666666666666432 344555666666666666666666666666666510
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...+++.+|.++...+.. .++ .+ ..++..+...|++++|+..|+++++.+
T Consensus 77 --~~~a~~~~g~~~~~~~~~-----~~~-----------~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 77 --IDYVMYMRGLTNMALDDS-----ALQ-----------GF------------FGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp --HHHHHHHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHhhhhh-----hhh-----------hh------------hccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 123555566665554421 000 01 123566677899999999999999999
Q ss_pred CCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHH
Q 005108 511 PSNSVLY-----------------CNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 511 p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~ 570 (714)
|++..++ +.+|.+|.+.|++++|+..|+++++..|+++ .+++.+|.+|.++|++++|++.
T Consensus 127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9986544 5789999999999999999999999999986 7899999999999999999999
Q ss_pred HHHHHHhCCCCH
Q 005108 571 FEVLRRELPDDN 582 (714)
Q Consensus 571 ~~~al~~~p~~~ 582 (714)
++++....|++.
T Consensus 207 ~~~l~~~~~~~~ 218 (225)
T 2yhc_A 207 AKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHCCSCCC
T ss_pred HHHHHhhCCCch
Confidence 999999888764
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=4.8e-18 Score=171.93 Aligned_cols=234 Identities=15% Similarity=0.045 Sum_probs=169.0
Q ss_pred HCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 288 GLGRIGEAVKECEEAVRL--------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 288 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
..|++++|+..|++++++ +|....++..+|.+|...|++++|+.+|++++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------- 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA--------------------- 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------
Confidence 456777777777777763 256688999999999999999999999877642
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CCCCCchhhhhhhhhhhH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~ 434 (714)
.+++....+.......+..+|.+|...|++++|+.+|+++++.. +++ ....
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~ 127 (283)
T 3edt_B 72 -------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH-----------PDVA 127 (283)
T ss_dssp -------------HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-----------HHHH
T ss_pred -------------HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC-----------hHHH
Confidence 11111001111123456668888888888888888888888762 211 0127
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
.++..+|.++...|++++|+.+|++++++ .|....++.. +|.++...|++++|+.+|+++
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN------------LASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH------------HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999999999987 3433344433 499999999999999999999
Q ss_pred hcc---------CCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 507 LRF---------DPSNSVLYCNRAACWFKLGQ------WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 507 l~~---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
+++ .+....++..++..+...+. +.++...++......|....++..+|.+|..+|++++|+.+|
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 986 45556777777777776554 444444444444445667789999999999999999999999
Q ss_pred HHHHHhC
Q 005108 572 EVLRREL 578 (714)
Q Consensus 572 ~~al~~~ 578 (714)
++++++.
T Consensus 276 ~~al~~~ 282 (283)
T 3edt_B 276 DCASRNR 282 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 9998753
No 98
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=7.2e-17 Score=152.00 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=158.7
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..+...|++++|+..++++++..|.. ...+..++.++...|++++|+.+++++++.+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN------------ 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------
Confidence 456677888999999999999999999998874 6777789999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.++++++...|.+...+..+ |.++...|++++|+.+|+++++..|
T Consensus 76 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 76 --VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL------------GVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH------------HHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 78899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+..++..+|.++...|++++|+.+++++++++|++.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999999999999988764
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.1e-17 Score=152.44 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=116.0
Q ss_pred HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005108 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWF 525 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 525 (714)
..+++-.+-..+++++.++|++...++.+ |.+++..|++++|+.+|+++++++|+++.+|+++|.+|.
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444445567788999999999998876 999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 526 KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
.+|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999865
No 100
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=1.3e-15 Score=155.76 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=204.1
Q ss_pred HHCCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC
Q 005108 287 TGLGRIG-EAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG 365 (714)
Q Consensus 287 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g 365 (714)
.+.|.+. +|+..+.+++.++|++..+|+..+.++..++... ++.. ...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~-------------~~~~------------------~~~ 88 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK-------------SPEE------------------SAA 88 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS-------------CHHH------------------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc-------------cchh------------------hhH
Confidence 3456664 8999999999999999999999999987654310 0000 012
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ--LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI 443 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~ 443 (714)
.+++++..++.++..+|. +..+|..++.++...++ +++++.++.++++.+|.+ ..+|...+.+
T Consensus 89 ~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN--------------y~AW~~R~~v 153 (331)
T 3dss_A 89 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--------------FHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHH
Confidence 356788899999999998 46677779999999994 899999999999999999 8999999999
Q ss_pred HHHhCc-HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC--------------cCHHHHHHHHHHhhc
Q 005108 444 EMALGR-FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS--------------ERFTEACQAYGEGLR 508 (714)
Q Consensus 444 ~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~--------------g~~~~A~~~~~~al~ 508 (714)
+...|. ++++++++.++++.+|.+..+|... +.++... +.++++++++.+++.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R------------~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYR------------SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH------------HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 999999 6999999999999999999999876 5555544 569999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKL-----------GQWERSVEDSNQALLIQPNYTKALLRRAASNS---KLEKWADAVRDFEVL 574 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~a 574 (714)
.+|+|..+|+.+..++... +.++++++.+++++++.|++...+..++.+.. ..+..++...++.++
T Consensus 222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 9999999998776666655 56899999999999999999766666654433 357888999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 005108 575 RRELPDDNEIAESLFH 590 (714)
Q Consensus 575 l~~~p~~~~~~~~L~~ 590 (714)
+++||.....+..+..
T Consensus 302 ~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 302 KAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHCGGGHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHH
Confidence 9999998887776643
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=4.3e-17 Score=144.09 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..+|..++..|+|++|++.|+++++++|++..++..+ |.++...|++++|+..|+++++++|++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNR------------AACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------hhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 78899999999999999999999999999999999998866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
..+|+++|.+|..+|++++|++.|+++++++|++..++..++.++
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988764
No 102
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=143.07 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=85.2
Q ss_pred ceeeehhhhHHhhhcc-CCC--ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVS-LPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~-~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+.+++. ++|...+. ... +++|+||++||++|+.+.|.+++++.+|+++.|++||+|+. +..|+|+++||+++
T Consensus 4 ~v~~it~-~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~~ 79 (118)
T 3evi_A 4 ELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIFV 79 (118)
T ss_dssp SCEECCG-GGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEEE
T ss_pred ceEEeCH-HHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEEE
Confidence 4455544 55665443 333 89999999999999999999999999999999999999985 68999999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|+||+.+.+++|+ +.++|+.+|.+++
T Consensus 80 fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g 113 (118)
T 3evi_A 80 YKNGQIEAKFIGIIECGGINLKLEELEWKLAEVG 113 (118)
T ss_dssp EETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTT
T ss_pred EECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcC
Confidence 9999999999986 4799999998865
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=5e-17 Score=152.96 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+| ++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR--------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 4568999999999999999999999999999 88999999999999999999999999999999 77
Q ss_pred HHHHHHHhHHHHHHHHHHHhH-HhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 469 EVAVLLNNVKLVARARARGND-LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+..+ +.+ +...++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 74 ~~~~~~------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 74 SYKSLI------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHH------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 655433 222 1222334468999999999999999999999999999999999999999999999976
Q ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 548 --TKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 548 --~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
..++..++.++..+|++++|+..|++++.
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 56999999999999999999999999875
No 104
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=9.7e-16 Score=162.63 Aligned_cols=283 Identities=13% Similarity=-0.021 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKECEEAVRLD--------PN 308 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~ 308 (714)
..+..+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|++++++. |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 367889999999999999999999999876543 3457889999999999999999999999864 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQL 388 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 388 (714)
...++..+|.++...|++++|+.++++++...... ++......
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~~~ 176 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------------------------------------QPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-------------------------------------CGGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-------------------------------------CcHHHHHH
Confidence 45677888889888888888888887765311000 00012234
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..++.++...|++++|+.++++++.+.+..... ..........++.++...|++++|..++++++...+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 5567888888888888888888887653322000 000111223455668899999999999999998776532
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.... ..+..++.++...|++++|+..+++++...+. ...++..+|.++...|++++|...|++++.
T Consensus 250 ~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1100 00123489999999999999999999876432 235888899999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+.+.. .....+...| +.....+++++...|-+.-.
T Consensus 322 ~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 322 LANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred Hhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCchHH
Confidence 74321 1223334444 67788888889888875433
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=2e-16 Score=163.22 Aligned_cols=239 Identities=11% Similarity=0.027 Sum_probs=168.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG-LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRH 332 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 332 (714)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ +.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4577888888888888776642 122 47888888888765 5577778888888888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 333 LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 333 ~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
|.+++. ++...++...+. ..+..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~---------------------~~~~~~~~~~~a---------------~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE---------------------AHANNRSLFHAA---------------KAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH---------------------HHHHTTCHHHHH---------------HHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH---------------------HHHHcCCHHHHH---------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 776641 122233333322 34456788899999999999999998
Q ss_pred ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 413 l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
+++.+... .....+.++..+|.+|.. |++++|+.+|++++++.+...... .....+.++|.++..
T Consensus 103 l~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 103 SVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVR 167 (307)
T ss_dssp HHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHH
Confidence 87754321 111235678899999998 999999999999998766431110 011223355999999
Q ss_pred CcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHh
Q 005108 493 SERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK-----ALLRRAASNSKL 561 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~ 561 (714)
.|+|++|+.+|++++++.+.+ ..++..+|.++..+|++++|+.+|++++ ++|++.. .+..++..+ ..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~ 245 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DE 245 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-Hh
Confidence 999999999999999976543 3478889999999999999999999999 9887542 344445544 45
Q ss_pred ccHHHHHH
Q 005108 562 EKWADAVR 569 (714)
Q Consensus 562 g~~~eA~~ 569 (714)
++.+.+.+
T Consensus 246 ~d~~~~~~ 253 (307)
T 2ifu_A 246 QDEEQLLR 253 (307)
T ss_dssp TCHHHHHH
T ss_pred cCHHHHHH
Confidence 55544433
No 106
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.2e-17 Score=171.95 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=172.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
.+|+..+...+..+...|+|++|+.+++.+.+..+ ++.+...++.+|.++|++.++.+.++. |+ ..+|..+|.
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd 130 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGD 130 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC-----C-----------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHH
Confidence 35777899999999999999999999999988544 478888999999999999999888752 43 469999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
.+...|+|++|+.+|.++ ..+..++.++.++|++++|++.+.++ ..+..|.....++..
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence 999999999999999876 35677888899999999999999999 257788889999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|+++.|..+...+. .+|+. ...+...|.+.|++++|+.++++++.+++.+...+..+
T Consensus 190 ~~ef~lA~~~~l~L~-~~ad~-----------------l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel---- 247 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-VHADE-----------------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL---- 247 (449)
T ss_dssp TTCHHHHHHTTTTTT-TCHHH-----------------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH----
T ss_pred cCcHHHHHHHHHHHH-hCHhh-----------------HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH----
Confidence 999999988887643 55543 44578899999999999999999999999999988877
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDP-----SNSVLYCNRAACWFKLGQWERSVEDSNQALLI---------- 543 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 543 (714)
....+-++.++..+.++.|...+.+.| .+..+|..+..+|.+.++|+.|+...-+....
T Consensus 248 ------~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~ 321 (449)
T 1b89_A 248 ------AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 321 (449)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH
T ss_pred ------HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHH
Confidence 224455667889999999999888888 88999999999999999999999866544322
Q ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 544 --QPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 544 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
.+.+.+.++.....|. +...+++..+..++
T Consensus 322 ~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 322 ITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 4566788887777776 44455566666665
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=2.1e-16 Score=178.00 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=135.7
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|++.|+++++++|++..++..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---- 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL---- 63 (568)
T ss_dssp -------------------CC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH----
T ss_pred CccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Confidence 478999999999999999998 88999999999999999999999999999999999988876
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|.++...|++++|+++|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++..++..++.++
T Consensus 64 --------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 64 --------GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh---ccHHHHHHHHHHHHHhCCCCHHH
Q 005108 559 SKL---EKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 559 ~~~---g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
..+ |++++|++.|+++++.+|++...
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 999 99999999999999999986433
No 108
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.70 E-value=2e-17 Score=141.11 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=79.9
Q ss_pred eehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 614 EVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 614 ~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.+.++|...+...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 4 ~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE 83 (105)
T ss_dssp ------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred ccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence 45566777787777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.++|+++|+++
T Consensus 84 ~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 84 ILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEESSCCHHHHHHHHHTT
T ss_pred EEEEeCCcCHHHHHHHHHHh
Confidence 9999999 999999999875
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.70 E-value=6.4e-17 Score=147.42 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=123.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
-..|++++.++|++...++.+ |..++..|++++|+..|+++++.+|+++.+|+++|.+|..+|++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence 356889999999988888766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+..|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++......++...+...+
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888777777776666543
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=7e-16 Score=153.22 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=183.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-------VEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
+..++..+.-+ ..+++..|++.|.+++..+|+. .+.|..+ +.++...++..+++..+++.+.+.|......
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 34445555555 5899999999999999999995 5666667 8999999999999999999999988863322
Q ss_pred hh--hhh-----hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCH
Q 005108 424 QT--RFF-----GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERF 496 (714)
Q Consensus 424 ~~--~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~ 496 (714)
.. -++ -......++..++.++...|+|++|.+.|+.++...|++. ..+.+ |.++++.++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~------------a~l~~~~~r~ 151 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMK------------AVVYGAAERW 151 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHH------------HHHHHHTTCH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHH------------HHHHHHcCCH
Confidence 21 000 0112345677889999999999999999999999898777 65544 9999999999
Q ss_pred HHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSN--SVLYCNRAACWFKLGQWERSVEDSNQALLIQ--PN-YTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
++|+.+|+++++..+.. ..+++++|.++..+|++++|+.+|++++.-. |. ..++++.+|.++.++|+.++|...|
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888764221 4589999999999999999999999998643 55 6689999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 005108 572 EVLRRELPDDNEIAESLF 589 (714)
Q Consensus 572 ~~al~~~p~~~~~~~~L~ 589 (714)
++++..+|+ ..+...|.
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999999999 88877774
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=2.2e-16 Score=161.18 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=153.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
|+ ....+..+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++
T Consensus 114 p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PR-EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--------------GEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CC-chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--------------hhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 44 45666779999999999999999999999999999 8899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
..+|+....+.. .+..+...++.++|+..|+++++.+|++..+++++|.+|...|++++|+..|++++
T Consensus 179 ~~~p~~~~~~~~------------~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 179 LQDQDTRYQGLV------------AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp GGGCSHHHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHH------------HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999965433332 26667888899999999999999999999999999999999999999999999999
Q ss_pred HhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 542 LIQPNY--TKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 542 ~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+.+|++ ..++..++.++..+|+.++|+..|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999998 89999999999999999999999999875
No 112
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.69 E-value=3.7e-15 Score=152.94 Aligned_cols=249 Identities=12% Similarity=-0.015 Sum_probs=199.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-.+++......+...+..++|++++++++.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|...+.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 334444444444555556678999999999999999999999999999999 5999999999999999999999988887
Q ss_pred HHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 319 LLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
++..+ +
T Consensus 132 lL~~l~~------------------------------------------------------------------------- 138 (349)
T 3q7a_A 132 LLDRISP------------------------------------------------------------------------- 138 (349)
T ss_dssp HHHHHCC-------------------------------------------------------------------------
T ss_pred HHHHhcC-------------------------------------------------------------------------
Confidence 76554 2
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHH--------HHHHHHHHHhccCCCCHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE--------NAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~ 469 (714)
.+++++++++.++++.+|.+ ..+|..++.++...++++ +++++++++++.+|.|..
T Consensus 139 --~~~~~EL~~~~k~L~~dpkN--------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 139 --QDPVSEIEYIHGSLLPDPKN--------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp --SCCHHHHHHHHHHTSSCTTC--------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --CChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 02346667777788888888 788888888888888887 999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcC-------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH------------
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSER-------FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW------------ 530 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------ 530 (714)
+|... +.++...++ ++++++++++++.++|+|..+|+.+..++.+.|+-
T Consensus 203 AW~~R------------~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 203 AWGWR------------WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHH------------HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHH------------HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 99865 888888886 79999999999999999999999999999887764
Q ss_pred --------HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 005108 531 --------ERSVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADAVRDFEVLR-RELPDDNEIAESLF 589 (714)
Q Consensus 531 --------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~L~ 589 (714)
.+-.+.+.+.+... +....++..++.+|...|+.++|++.|+.+. +.||-....+....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 33333333333322 4678899999999999999999999999987 67887766665543
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=1.3e-16 Score=145.26 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=115.8
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..+++-.+-..++++++++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|..+
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~--------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l--- 76 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDM--------------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL--- 76 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred HHHHHHHCCCCHHHHhCCCHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 3334444556788999999998 88999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
|.++...|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 77 ---------g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 77 ---------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ---------HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999865
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.69 E-value=5.2e-15 Score=151.88 Aligned_cols=237 Identities=8% Similarity=-0.047 Sum_probs=187.6
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHH
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNAAFRSNRAAALTGL-G-RIGEAVKECEEAV 303 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al 303 (714)
..........++|++..+|+.++.++...| .+++++.++++++..+|++..+|..++.++..+ + +++++++.+++++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 333334445689999999999999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+.+|.+..+|...+.++...+.++.+
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~------------------------------------------------------ 178 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRI------------------------------------------------------ 178 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCC------------------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHhcccccc------------------------------------------------------
Confidence 99999999999999888765533210
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc-------HHHHHHH
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR-------FENAVTA 456 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~ 456 (714)
.. ..+++++++++++++.+|.+ ..+|..++.++...++ +++++++
T Consensus 179 -~~-------------~~~~eELe~~~k~I~~dp~N--------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 179 -SE-------------AQWGSELDWCNEMLRVDGRN--------------NSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp -CH-------------HHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred -ch-------------hhHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 00 01247788888888889988 8899999999999887 7999999
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC--------------------HHHHHHHHHHhhccC------
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER--------------------FTEACQAYGEGLRFD------ 510 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~--------------------~~~A~~~~~~al~~~------ 510 (714)
+++++.++|++..+|..+ ..++...|+ ..+-.+.+.+.+...
T Consensus 231 ~~~aI~~~P~n~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYL------------RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHCTTCHHHHHHH------------HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHhCCCCHHHHHHH------------HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 999999999999999877 334444443 233333333333332
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Q 005108 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQAL-LIQPNYTKALLRRAAS 557 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 557 (714)
+..+.++..++.+|.+.|+.++|+++|+.+. +.||-....|..++..
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 4678899999999999999999999999987 6788777777655543
No 115
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.68 E-value=1.3e-16 Score=137.03 Aligned_cols=100 Identities=26% Similarity=0.512 Sum_probs=93.6
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
....+.++|..++...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 9 ~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp EECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34556678888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
.+.++.|.+.++|+++|+++
T Consensus 89 ~~~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 89 EVAKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHhh
Confidence 99999999889999999886
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=1e-17 Score=175.13 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHhhccccCCCCCCCchhhhhh
Q 005108 365 GDWKSALREGDA----AIAAGADFSPQLSMCRVEALL------------KLHQLEDAESSLSNIPKIEPSTVSSSQTRFF 428 (714)
Q Consensus 365 g~~~~Al~~~~~----al~~~p~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 428 (714)
+.|++|+..++. ++.+.|++ .|..++.... .++++++|+..|+++++.+|..
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~--------- 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ--------- 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---------
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---------
Confidence 345666666666 66666653 2222333222 4566777777777777766665
Q ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---------------HHHHHHHHhHHHHHHHHHHHhHHhhC
Q 005108 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---------------VEVAVLLNNVKLVARARARGNDLFKS 493 (714)
Q Consensus 429 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~l~~~~~~~~~g~~~~~~ 493 (714)
+.+++.+|.+++..|++++|+..|++++.++|++ ..++. ++|.++.+.
T Consensus 147 -----a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~------------nla~~~~~~ 209 (336)
T 1p5q_A 147 -----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL------------NLAMCHLKL 209 (336)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH------------HHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH------------HHHHHHHHc
Confidence 7899999999999999999999999999999998 34444 459999999
Q ss_pred cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA-VRDFE 572 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~ 572 (714)
|++++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55777
Q ss_pred HHHHh
Q 005108 573 VLRRE 577 (714)
Q Consensus 573 ~al~~ 577 (714)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=3.1e-16 Score=155.81 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-------AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..++..|.-+ ..+++.+|++.|.++++++|....+|..+ +.++..++++.+++..+++.+.+.|....+++.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 4455566665 57788888888888888888888888887 677777777777777777777777776554443
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+.-+| |+. ..--.....+...++.+
T Consensus 87 ~~g~y---~~~----------------------------------------------------~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 87 IGGLY---GDI----------------------------------------------------TYPVTSPLAITMGFAAC 111 (282)
T ss_dssp CCTTT---CCC----------------------------------------------------EEECSSHHHHHHHHHHH
T ss_pred cCCcc---ccc----------------------------------------------------ccccCCHhHHHHHHHHH
Confidence 11111 000 00000113445557888
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--HHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN--VEVAVL 473 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 473 (714)
+...|++++|.+.|..++...|.+ . ..+.+|.++++.+++++|+.+|+++....+.. ..+++.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~--------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEH--------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHH--------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCch--------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 999999999999999999888876 5 88999999999999999999999887653221 224444
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
+ |.++..+|++++|+.+|++++.-. |. ...+++++|.++.++|+.++|...|++++..+|+ ..+
T Consensus 177 L------------G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 177 H------------GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp H------------HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred H------------HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 4 999999999999999999998654 55 5679999999999999999999999999999999 776
Q ss_pred HHHHH
Q 005108 551 LLRRA 555 (714)
Q Consensus 551 ~~~la 555 (714)
+..|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=1.9e-16 Score=163.42 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=130.3
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
.+|...|++++|+.+|.+++++.+.. ......+.++..+|.+|..+|++++|+.+|++++++.+......
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-- 113 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANN--------RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD-- 113 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH--
Confidence 34444455555555555554443221 00112256788999999999999999999999998754321110
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+..+.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.|++
T Consensus 114 ----~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 ----TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp ----HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 011223356999999 99999999999999987643 5789999999999999999999999999986543
Q ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 548 ------TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 548 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
..+++.++.++..+|++++|+.+|++++ ++|+...
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3578899999999999999999999999 9997654
No 119
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.66 E-value=1.4e-16 Score=138.39 Aligned_cols=100 Identities=27% Similarity=0.512 Sum_probs=92.4
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
....+.++|..++. ..++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 14 ~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 93 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93 (116)
T ss_dssp BCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeC
Confidence 34456678888887 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+++.++.|.+.+.|+++|+++
T Consensus 94 G~~~~~~~G~~~~~l~~~l~~~ 115 (116)
T 3qfa_C 94 GQKVGEFSGANKEKLEATINEL 115 (116)
T ss_dssp SSEEEEEESCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=2.8e-16 Score=142.10 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=119.2
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
..|++++.++|++...++.+ |..++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 56788899999888887765 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++......++...++..
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877777776666543
No 121
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.66 E-value=3.2e-16 Score=134.10 Aligned_cols=101 Identities=26% Similarity=0.481 Sum_probs=91.8
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.+.++|...+ ...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 34566677888877 4678999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|+.+.++.|...++|+++|+++
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~ 105 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQH 105 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999667799999875
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=7e-14 Score=157.71 Aligned_cols=341 Identities=9% Similarity=-0.028 Sum_probs=231.7
Q ss_pred cccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Q 005108 226 ENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR---IGEAVKECEEA 302 (714)
Q Consensus 226 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 302 (714)
+....+......+|.|...|..++..+...++++.|...|++++...|.....|...+......++ ++.+...|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334344444557899999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhcCC--CcHHHHHHHHHHHHHcCCH--------HHHHHHHHhhcC--CC-Ch---HHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 303 VRLDP--NYWRAHQRLGSLLVRLGQV--------ENARRHLCLSGQ--QA-DP---TEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 303 l~~~p--~~~~a~~~la~~~~~~g~~--------~~A~~~~~~al~--~~-~~---~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
+...| .+.+.|..+.......++. +.....|+.++. .. ++ ..|.....+.........+...++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 99984 5778888887766665543 334478888775 22 22 222211111100000000112334
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHH-------------------------
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEAL-------------LKLHQLEDAESS------------------------- 408 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~-------------~~~g~~~~A~~~------------------------- 408 (714)
++.+..+|++++..-......+|......- ....+|+.|...
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 566667777776531122222221111000 001122223322
Q ss_pred ------------------------------------------hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 409 ------------------------------------------LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 409 ------------------------------------------~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
|++++...|.+ ..+|+..+..+..
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~--------------~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA--------------PEIWFNMANYQGE 355 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHh
Confidence 33333333332 5678899999999
Q ss_pred hCcHHHHH-HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----------CCC--
Q 005108 447 LGRFENAV-TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----------DPS-- 512 (714)
Q Consensus 447 ~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~-- 512 (714)
.|+.++|+ ..|++++...|.+...|..+ +......|++++|.+.|+++++. .|.
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~------------a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSL------------SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999997 99999999999998888766 77788888888888888888864 242
Q ss_pred ---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 005108 513 ---------NSVLYCNRAACWFKLGQWERSVEDSNQALLI-QPNYTKALLRRAASNSKLEK-WADAVRDFEVLRRELPDD 581 (714)
Q Consensus 513 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~ 581 (714)
...+|..++....+.|+.+.|...|.+|++. .+....+|...+.+..+.++ ++.|...|+.+++..|++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 3457788888888888888888888888876 43445667767776666654 888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005108 582 NEIAESLFHAQ 592 (714)
Q Consensus 582 ~~~~~~L~~~~ 592 (714)
+.++..+....
T Consensus 504 ~~~w~~y~~fe 514 (679)
T 4e6h_A 504 GEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88775555443
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=2e-15 Score=169.94 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=138.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 005108 364 VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI 443 (714)
Q Consensus 364 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~ 443 (714)
.|++++|+..|+++++.+|+. ...+..+|.+|...|++++|++.|+++++++|++ ..+++.+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--------------PEAVARLGRV 66 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--------------HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHH
Confidence 478999999999999999974 6777789999999999999999999999999998 8899999999
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
+..+|++++|+++|+++++++|++..++..+ |.++...|++++|+++|+++++++|++..++.++|.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999988766 9999999999999999999999999999999999999
Q ss_pred HHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 524 WFKL---GQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 524 ~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+..+ |++++|++.|+++++.+|++...+..++
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999 9999999999999999999888777666
No 124
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=3.9e-16 Score=140.47 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS-------NSV-----LYCNRAACWFKLGQWERSVEDSNQALLI- 543 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~- 543 (714)
+..+..+.++|..+++.|+|++|+..|+++|+++|+ +.. +|.++|.++.++|+|++|+.+|++++++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344556677899999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 544 ------QPNYTKAL----LRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 544 ------~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...+..+...++.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998888877777766654
No 125
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.64 E-value=5.3e-16 Score=136.55 Aligned_cols=101 Identities=29% Similarity=0.449 Sum_probs=93.8
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+..+...++|...+...++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~G 100 (125)
T 1r26_A 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSG 100 (125)
T ss_dssp CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence 55667768888888778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+.+.++.|.+.++|+++|+++
T Consensus 101 ~~~~~~~G~~~~~l~~~l~~~ 121 (125)
T 1r26_A 101 KMLGHVIGANPGMLRQKLRDI 121 (125)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHHH
Confidence 999999999889999999875
No 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=2.7e-15 Score=141.05 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=140.7
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhh
Q 005108 353 KHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432 (714)
Q Consensus 353 ~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 432 (714)
..+.++..+...|++++|+..|+++++.+|++ ...+..+|.++...|++++|+..|++++..+| +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~------------- 72 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D------------- 72 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-------------
Confidence 35667778999999999999999999999984 67777899999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHH-HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 433 EAYTFFVRAQIEM-ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 433 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+..++.+.. ..++..+|+..|+++++.+|++..+++.+ |.++...|++++|+..|+++++.+|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 73 -NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL------------AVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred -hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCc
Confidence 334444444432 33344568999999999999999999877 9999999999999999999999998
Q ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 512 SN--SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 512 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+. ..++.+++.++..+|++++|+..|++++.
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 75 67999999999999999999999999875
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=5.5e-17 Score=169.63 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=152.9
Q ss_pred cCCHHHHHHHhhc----cccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH------------HhCcHHHHHHHHHHHhc
Q 005108 399 LHQLEDAESSLSN----IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM------------ALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 399 ~g~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~ 462 (714)
.+.+++|+..++. ++.+.|.. +|..+|.... .++++++|+..|++++.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~----------------ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~ 141 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY----------------AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSE 141 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT----------------TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc----------------ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHH
Confidence 4578899999999 89888875 1222222221 46778888888888888
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHh
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKL 527 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~ 527 (714)
..|++...+..+ |.+++..|+|++|+.+|+++++++|.+ ..+|+++|.+|.++
T Consensus 142 ~~p~~a~~~~~~------------g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 142 EKLEQSTIVKER------------GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 877777776655 999999999999999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 528 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+..++..+++....
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776544
No 128
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.64 E-value=4.6e-16 Score=134.64 Aligned_cols=102 Identities=27% Similarity=0.526 Sum_probs=94.0
Q ss_pred ceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+..+.+.+.+..++...+++++.||++||++|+.+.|.++++..+++++.|+.||+++.++++++|+|.++||+++|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 92 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKD 92 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEET
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Confidence 45567777888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|...++|+++|+++
T Consensus 93 G~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 93 GQLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp TEEEEEEESSCHHHHHHHHHTC
T ss_pred CeEEEEEeCCCHHHHHHHHHhC
Confidence 9999999999888999998764
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1e-14 Score=129.04 Aligned_cols=134 Identities=22% Similarity=0.395 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+++.+|.++...|++++|+..++++++..|.+...+..+ |.++...|++++|+.+|+++++..|.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHH------------HHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 578899999999999999999999999999998887765 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+++.+|.++...|++++|+..++++++..|++..+++.+|.++...|++++|+.+|+++++.+|++
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=1.7e-14 Score=140.00 Aligned_cols=186 Identities=11% Similarity=-0.012 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
+|+..|+++.+.+ .+..++.+|.+|...+++++|+.+|+++.+. .+ +.+++.+|.+|.. +
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~--------------~~a~~~lg~~y~~-~ 63 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD--------------GDALALLAQLKIR-N 63 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC--------------HHHHHHHHHHTTS-S
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--------------HHHHHHHHHHHHc-C
Confidence 5778888888863 5677888999999999999999999999875 34 6789999999998 7
Q ss_pred ----cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCC--CCHHHHH
Q 005108 449 ----RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFDP--SNSVLYC 518 (714)
Q Consensus 449 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~ 518 (714)
++++|+.+|+++.+ +.++.+++.+ |.+|.. .+++++|+.+|+++++..+ .++.+++
T Consensus 64 g~~~~~~~A~~~~~~A~~--~g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~ 129 (212)
T 3rjv_A 64 PQQADYPQARQLAEKAVE--AGSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQM 129 (212)
T ss_dssp TTSCCHHHHHHHHHHHHH--TTCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--CCCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 89999999999965 5677777766 888988 8999999999999999987 3599999
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 519 NRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL-E-----KWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 519 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++|.+|.. .+++++|+.+|++++++ +.++.+++.||.+|..- | ++++|+.+|+++.+.. +.+....|
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 99999999 89999999999999998 66788999999999764 3 8999999999999984 56666655
Q ss_pred HHH
Q 005108 589 FHA 591 (714)
Q Consensus 589 ~~~ 591 (714)
..+
T Consensus 207 ~~l 209 (212)
T 3rjv_A 207 DRI 209 (212)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.6e-15 Score=130.27 Aligned_cols=115 Identities=26% Similarity=0.459 Sum_probs=108.6
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
..+..+|..++..|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++..+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34456699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 005108 561 LEKWADAVRDFEVLRREL------PDDNEIAESLFHAQVSL 595 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~------p~~~~~~~~L~~~~~~l 595 (714)
+|++++|+..|+++++++ |++..+...+..+...+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999 99999999988876553
No 132
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.63 E-value=5.2e-16 Score=141.10 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=91.3
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.+.+.|...+ ...++++|+||++||++|+.+.|.++++..++++ +.|++||+|+.+++++.|+|.++||++++
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 34455667788777 4578999999999999999999999999999987 99999999999999999999999999999
Q ss_pred eCCeEE---------EEEcC-C-CHHHHHHHHhhh
Q 005108 689 KNGSRM---------KEIVC-P-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~---------~~~~g-~-~~~~l~~~~~~~ 712 (714)
++|+.+ .++.| + +.++|.+.|+.+
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 999999 99999 7 999999998875
No 133
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=99.63 E-value=6.5e-16 Score=132.82 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=88.5
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.+.| ..+...+.+++.||++||++|+.+.|.++++...++++.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3444566 555567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhhc
Q 005108 695 KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~~ 713 (714)
.++.|. +.++|+.+|+.+.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC-
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 999998 9999999998763
No 134
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.63 E-value=9.4e-16 Score=130.60 Aligned_cols=100 Identities=28% Similarity=0.561 Sum_probs=92.3
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.+.+++...+. .++++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEEC
Confidence 34666677887776 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|.+.+.|+++|+++
T Consensus 83 g~~~~~~~g~~~~~l~~~l~~~ 104 (105)
T 3m9j_A 83 GQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TEEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 135
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=131.48 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=86.9
Q ss_pred eehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhh--CCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 614 EVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGR--YPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 614 ~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~--~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+...+.|...+.. .++++++||++||++|+.+.|.++++..+ ++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 4 ~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 83 (112)
T 3d6i_A 4 EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIII 83 (112)
T ss_dssp EECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred ccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEEE
Confidence 45555677777764 77999999999999999999999999998 67899999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|...++|+++|+++
T Consensus 84 ~~G~~~~~~~G~~~~~l~~~l~~~ 107 (112)
T 3d6i_A 84 HKGTILKELSGADPKEYVSLLEDC 107 (112)
T ss_dssp ETTEEEEEECSCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCHHHHHHHHHHH
Confidence 999999999999767799998875
No 136
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.62 E-value=8.1e-16 Score=135.28 Aligned_cols=102 Identities=26% Similarity=0.470 Sum_probs=92.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 96 (124)
T 1xfl_A 17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFM 96 (124)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCEEE
Confidence 45666677777776653 67999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+++.++.|.+.++|+++|+++
T Consensus 97 ~~~~G~~~~~~~G~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 97 FLKEGKILDKVVGAKKDELQSTIAKH 122 (124)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999999875
No 137
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=99.62 E-value=3e-16 Score=130.81 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=90.7
Q ss_pred cccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccc-c
Q 005108 608 FGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRI-V 682 (714)
Q Consensus 608 ~~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~-~ 682 (714)
|.+.+..+.+.++|++++...++++|+|+++||++|+++.|.++++..+ +++.|++||+++.++ +|..|+|++ .
T Consensus 4 ~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s 82 (112)
T 3iv4_A 4 FQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHES 82 (112)
T ss_dssp GGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred hhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence 4567788899999999998889999999999999999999999999886 789999999999866 899999995 9
Q ss_pred ceEEEEeCCeEEEEEc-CC-CHHHHHHHHh
Q 005108 683 PTFKIYKNGSRMKEIV-CP-SRDMLEHSVR 710 (714)
Q Consensus 683 Pt~~~~~~G~~~~~~~-g~-~~~~l~~~~~ 710 (714)
||+++||||+.+.+.. +. +.+.|++.|+
T Consensus 83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 83 PQAFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp SEEEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred CeEEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 9999999999998754 55 9898887653
No 138
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=1.1e-14 Score=148.60 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=151.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
+.++.++..+...|++++|+..|+++++.+|++ ...+..+|.++...|++++|+..|++++..+|+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------------ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------------ 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------------
Confidence 345677888999999999999999999999985 6677789999999999999999999999999965
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+...+..+...++.++|+..|++++..+|++..+++.+ |.++...|++++|+..|+++++.+|
T Consensus 185 --~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l------------a~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 185 --RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL------------ALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp --HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhccc
Confidence 56677777788899999999999999999999999999877 9999999999999999999999999
Q ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 512 SN--SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 512 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
++ ..++.+++.+|..+|+.++|+..|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 98 89999999999999999999999999875
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.62 E-value=6e-15 Score=136.51 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=113.6
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRF------------------DPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
.+..+..+|..+++.|+|++|+..|++++++ +|.+..+|+++|.||.++|+|++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567799999999999999999999998 6777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhhhcccc
Q 005108 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN-EIAESLFHAQVSLKKSRGEE 602 (714)
Q Consensus 541 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~L~~~~~~l~~~~~~~ 602 (714)
++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++. .+...|..+...++..+.++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 77888888888887665544
No 140
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.61 E-value=1.2e-15 Score=131.57 Aligned_cols=102 Identities=33% Similarity=0.511 Sum_probs=92.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 82 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence 45566677788877765 7799999999999999999999999999998 799999999999999999999999999
Q ss_pred EEEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 686 KIYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|++|+.+.++.|.+.++|+++|+++
T Consensus 83 ~~~~~G~~~~~~~G~~~~~l~~~l~~~ 109 (112)
T 1ep7_A 83 HVYKDGVKADDLVGASQDKLKALVAKH 109 (112)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEEECCeEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999875
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=1.3e-15 Score=138.72 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
...|++++.++|.+ ...++.+|.++...|++++|+..|++++.++|++..+|..+
T Consensus 7 ~~~~~~al~~~p~~--------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------- 61 (148)
T 2vgx_A 7 GGTIAMLNEISSDT--------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL----------- 61 (148)
T ss_dssp CCSHHHHTTCCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred hhhHHHHHcCCHhh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHH-----------
Confidence 34577788888887 78899999999999999999999999999999999999876
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++...
T Consensus 62 -g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 62 -GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.61 E-value=9.3e-15 Score=129.18 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=98.8
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-------TKALLR 553 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 553 (714)
..++++|..+++.|+|++|+.+|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|++ ..++++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455679999999999999999999999999999999999999999999999999999999998765 358899
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 554 RAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+|.++..+|++++|+++|+++++..|+ +++...|.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 999999999999999999999999885 6666555443
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=1.3e-14 Score=147.51 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=149.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
|.++..++.+|..++..|+|++|+.+|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQA--DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+|..+|++++|+..|++++... ++..... .+...+ ...++...........+. ...+...++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSAL----------RIAKKKRWNSIEERRIHQ-ESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHH----------HHHHHHHHHHHHHTCCCC-CCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHH----------HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 9999999999999999987511 1000000 000000 011111222222223333 233344344443
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhcc
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQI 463 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 463 (714)
.|++++|++.++++++.+|.+ ......++.++... +++++|.++|+++.+.
T Consensus 148 --~~~~~~A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 --AAERERELEECQRNHEGHEDD--------------GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp --HHHHHHHHTTTSGGGTTTSCH--------------HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred --HHHHHHHHHHHHhhhccccch--------------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 799999999999999999987 45555566666665 7789999999998764
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=4.9e-15 Score=133.80 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=114.3
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
..|++++.++|.+ ...++.+|..+...|++++|+..|++++..+|++..+|..+
T Consensus 5 ~~l~~al~~~p~~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------ 58 (142)
T 2xcb_A 5 GTLAMLRGLSEDT--------------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL------------ 58 (142)
T ss_dssp ----CCTTCCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------
T ss_pred hhHHHHHcCCHHH--------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHH------------
Confidence 5678888888887 78899999999999999999999999999999999999876
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.....+..+...+
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876655554444433
No 145
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.60 E-value=1.8e-15 Score=138.57 Aligned_cols=102 Identities=27% Similarity=0.466 Sum_probs=93.3
Q ss_pred ceeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..+.+.+.|..++.. .++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 92 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 45566667788887766 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+++.++.|.+.++|.++|+++
T Consensus 93 ~~G~~~~~~~G~~~~~l~~~i~~~ 116 (153)
T 2wz9_A 93 KNSQKIDRLDGAHAPELTKKVQRH 116 (153)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999888899999875
No 146
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=99.60 E-value=2.9e-15 Score=127.24 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=90.3
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.+.+.+.|...+. ..+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 3455567777776 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+.+.++.|.+.++|+++|+++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~ 103 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRH 103 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 147
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.59 E-value=2.4e-15 Score=129.73 Aligned_cols=100 Identities=32% Similarity=0.574 Sum_probs=92.3
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
....+.++|..++...+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 90 (112)
T 1syr_A 11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 90 (112)
T ss_dssp EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCc
Confidence 34455678888887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
.+.++.|.+.++|+++|+++
T Consensus 91 ~~~~~~G~~~~~l~~~l~~~ 110 (112)
T 1syr_A 91 SVDTLLGANDSALKQLIEKY 110 (112)
T ss_dssp EEEEEESCCHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999875
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=4.8e-15 Score=139.26 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=121.5
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++++|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3467899999999999999999999998876 9999999999999999999999999999999999999
Q ss_pred -HHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 524 -WFKLGQW--ERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 524 -~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
+...|++ ++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++......+..
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 8899999 999999999999999999999999999999999999999999999999998665544433
No 149
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.59 E-value=3.5e-15 Score=128.48 Aligned_cols=96 Identities=19% Similarity=0.343 Sum_probs=89.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.++|...+ ...+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 446777766 6778999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|+++|+++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADV 108 (111)
T ss_dssp EEEESSCCHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHH
Confidence 999999 999999999875
No 150
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.59 E-value=2.9e-15 Score=130.35 Aligned_cols=100 Identities=26% Similarity=0.429 Sum_probs=91.2
Q ss_pred eeeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+...+.|...+. ..++++++||++||++|+.+.|.++++..++ ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 455666677777776 5779999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|+.+.++.|.+.++|+++|+++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKF 116 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999989999999875
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=1.8e-14 Score=133.56 Aligned_cols=115 Identities=22% Similarity=0.388 Sum_probs=106.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.+++..|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..+|+.+|.+|..+|++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhhhc
Q 005108 565 ADAVRDFEVLRRELPDDNE--IAESLFHAQVSLKKSR 599 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~--~~~~L~~~~~~l~~~~ 599 (714)
++|+.+|+++++++|++.. +...+..++..+++..
T Consensus 96 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 96 KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666666666665544
No 152
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=7.2e-13 Score=149.49 Aligned_cols=318 Identities=10% Similarity=-0.037 Sum_probs=235.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGC---FGEALSMYDKAISLAP--RNAAFRSNRAAALTGLGRI--------GEAVKECEEA 302 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~---~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a 302 (714)
...|.....|...+......++ ++.+..+|++++...| .++.+|..........++. +...+.|++|
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA 173 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4678889999999999999999 9999999999999884 6778888777665555543 3344788888
Q ss_pred Hh---c-CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHhhcCCCCh-H--HHHHHHHHH--------------
Q 005108 303 VR---L-DPNYWRAHQRLGSLLV---------RLGQVENARRHLCLSGQQADP-T--EVHRLQVVE-------------- 352 (714)
Q Consensus 303 l~---~-~p~~~~a~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~-~--~~~~l~~~~-------------- 352 (714)
+. . ++.....|..+..... .+++.+.+..+|++++..+.. . .+......+
T Consensus 174 l~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 76 3 6767777777765543 344577888999998873221 1 110000000
Q ss_pred --HHHHHhHH-----------------------------------------------HHHcC--------CHHHHHHHHH
Q 005108 353 --KHLSKCTD-----------------------------------------------ARKVG--------DWKSALREGD 375 (714)
Q Consensus 353 --~~~~~a~~-----------------------------------------------~~~~g--------~~~~Al~~~~ 375 (714)
..+..+.. +.+.. ..+.....|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 00000000 00000 1223456799
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 376 AAIAAGADFSPQLSMCRVEALLKLHQLEDAE-SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 376 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
+++...|. .+.+|...+..+...|+.++|. .+|++++...|.+ ...|...+..+...|++++|.
T Consensus 334 ~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--------------~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 334 QAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--------------AVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhCCHHHHH
Confidence 99999887 6888888999999999999997 9999999999987 778999999999999999999
Q ss_pred HHHHHHhccC-----------CCC-----------HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-CC
Q 005108 455 TAAEKAGQID-----------PRN-----------VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-DP 511 (714)
Q Consensus 455 ~~~~~al~~~-----------p~~-----------~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p 511 (714)
++|++++... |.+ ..+|..+ +....+.|..+.|...|.+|++. .+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y------------~~~erR~~~l~~AR~vf~~A~~~~~~ 466 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY------------MNTMKRIQGLAASRKIFGKCRRLKKL 466 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH------------HHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 9999999752 432 2244443 66667778899999999999887 44
Q ss_pred CCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 512 SNSVLYCNRAACWFKLGQ-WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
....+|...|.+..+.++ ++.|.++|+++++..|+++..+..++......|+.+.|...|+++++..|+
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 456777777777777654 899999999999999999988888888888899999999999999998874
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=3.2e-14 Score=137.79 Aligned_cols=135 Identities=18% Similarity=0.282 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
....++.+|..+...|++++|+..|++++ ++ +..++..+ |.++...|++++|+.+|+++++++|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNI------------GCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 35568899999999999999999999996 33 55666554 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT----------------KALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+..+++++|.+|..+|++++|+..|++++++.|++. .+++.+|.+|..+|++++|+++|+++++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888766 9999999999999999999999999999
Q ss_pred hCCCCH
Q 005108 577 ELPDDN 582 (714)
Q Consensus 577 ~~p~~~ 582 (714)
++|++.
T Consensus 150 ~~p~~~ 155 (213)
T 1hh8_A 150 MKSEPR 155 (213)
T ss_dssp TCCSGG
T ss_pred cCcccc
Confidence 999764
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=7.1e-14 Score=129.08 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+..++.+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|+.+|+++++.+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4477899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhccHHHHHHHHHHHHHh
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR--AASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.+..+++.+|.++..+|++++|+.+|+++++++|++..++..+ +..+...|++++|++.++++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999999999999999888555 44488899999999999877654
No 155
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.3e-15 Score=166.43 Aligned_cols=193 Identities=17% Similarity=0.110 Sum_probs=161.0
Q ss_pred HHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 361 ARKVGD-WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ----------LEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 361 ~~~~g~-~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
....++ .++|++.+++++..+|++ ..+|..++.++..+++ +++++++++++++.+|++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------- 106 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------- 106 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----------
Confidence 334444 467899999999999985 5666779999999988 899999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-CHHHHHHHHHHh
Q 005108 430 MLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-RFTEACQAYGEG 506 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-~~~~A~~~~~~a 506 (714)
..+|+.++.++...+ ++++|+++++++++++|.+..+|... +.++...| .+++++++++++
T Consensus 107 ----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R------------~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR------------RFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTCCCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHH------------HHHHHHcCCChHHHHHHHHHH
Confidence 888999999999988 66999999999999999998888755 77888888 888999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH------
Q 005108 507 LRFDPSNSVLYCNRAACWFKL--------------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD------ 566 (714)
Q Consensus 507 l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e------ 566 (714)
++.+|.+..+|++++.++..+ +.+++|++++++++.++|++..+|+.++.++.+.+++++
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~ 250 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHV 250 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeee
Confidence 999999999999999888875 567888888888888888888888888888888887666
Q ss_pred ------HHHHHHHHHHhCCC
Q 005108 567 ------AVRDFEVLRRELPD 580 (714)
Q Consensus 567 ------A~~~~~~al~~~p~ 580 (714)
|+.+|.++++++|.
T Consensus 251 ~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 251 SREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp ETTTTEEEEEEEEEECTTBT
T ss_pred ccCCceEEEEeccceecccc
Confidence 55556666666664
No 156
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.58 E-value=6.2e-14 Score=141.03 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC--CCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP--STVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
|+..+++.+...+.. ...+..+|.++...|++++|++++.+.+..+| .+ ..++..++.++..+
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~--------------lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT--------------TELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH--------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc--------------HHHHHHHHHHHHHC
Confidence 344455555443332 33345699999999999999999999988887 44 77888999999999
Q ss_pred CcHHHHHHHHHHHhccCCC----CHHHHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCC--CHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPR----NVEVAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPS--NSVLYCN 519 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~ 519 (714)
|+.+.|.+.++++.+.+|+ +......+ ..+++.+..| ++++|...|+++.+..|+ ....+++
T Consensus 150 ~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln 219 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNAIEDTVSGDNEMILNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN 219 (310)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCccccccchHHHHHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 9999999999999999883 12222222 1254455545 999999999999988886 3445555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 520 RAACWFKLGQWERSVEDSNQALLI----------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
++.++|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.....
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 899999999999999988876 58899999999999999998 999999999999999998876543
No 157
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.58 E-value=6.2e-15 Score=127.12 Aligned_cols=93 Identities=25% Similarity=0.341 Sum_probs=86.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|...+ ..++++++||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 9 ~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (112)
T 2voc_A 9 QSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETS 87 (112)
T ss_dssp TTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEEE
T ss_pred HHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEEE
Confidence 5566666 67799999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.++|+++|+++
T Consensus 88 ~G~~~~~~l~~~l~~~ 103 (112)
T 2voc_A 88 VGFKPKEALQELVNKH 103 (112)
T ss_dssp ESCCCHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 999999999875
No 158
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.58 E-value=4.8e-15 Score=129.12 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=92.8
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 86 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEEE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEEE
Confidence 45666677778777654 67999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+.+.++.|.+.++|.++|+++
T Consensus 87 ~~~~g~~~~~~~g~~~~~l~~~l~~~ 112 (118)
T 2vm1_A 87 FIKDGEKVDSVVGGRKDDIHTKIVAL 112 (118)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEeCCeEEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999999999875
No 159
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.57 E-value=6.1e-15 Score=135.03 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=91.3
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+....+. .+.|...+....+++|+||++||++|+.+.|.++++..+++ ++.|++||+++.++++..|+|+++||+++|
T Consensus 47 ~~~~~l~-~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 125 (155)
T 2ppt_A 47 GKVAGID-PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125 (155)
T ss_dssp SSEEECC-HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE
T ss_pred CCCccCC-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE
Confidence 3444444 46777777667899999999999999999999999999987 699999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+.+.++.|. +.++|+++|+++
T Consensus 126 ~~G~~~~~~~G~~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 126 HKGRELARAAGARPASELVGFVRGK 150 (155)
T ss_dssp ETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHH
Confidence 999999999999 999999999875
No 160
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=1.2e-13 Score=134.08 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHH
Q 005108 434 AYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAY 503 (714)
Q Consensus 434 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~ 503 (714)
..+++.+|.+|.. .+++++|+.+|+++++..+. ++.+++.+ |.+|.. .+++++|+.+|
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL------------GLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH------------HHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH------------HHHHHcCCCCCCCHHHHHHHH
Confidence 4456666666665 66777777777777777663 35555544 777777 77888888888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKL-G-----QWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+++++. +.++.+++++|.+|..- | ++++|+.+|+++++.. +..+...++
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 888887 56777888888888764 2 7888888888888774 344444444
No 161
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.57 E-value=2.9e-15 Score=129.45 Aligned_cols=103 Identities=30% Similarity=0.496 Sum_probs=93.0
Q ss_pred cceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceE
Q 005108 610 GEVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
+.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEE
Confidence 345667677777776653 6789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 686 KIYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|++|+.+.++.|.+.+.|.++|+++
T Consensus 84 ~~~~~G~~~~~~~g~~~~~l~~~l~~~ 110 (113)
T 1ti3_A 84 IFLKDGKLVDKTVGADKDGLPTLVAKH 110 (113)
T ss_dssp EEEETTEEEEEEECCCTTHHHHHHHHH
T ss_pred EEEeCCEEEEEEecCCHHHHHHHHHHh
Confidence 999999999999999889999999875
No 162
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.57 E-value=4.5e-15 Score=129.96 Aligned_cols=103 Identities=29% Similarity=0.513 Sum_probs=95.8
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhCCccccceEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.....+.+.++|..++...+++++.||++||+.|+.+.|.++++...+++ +.|+.||+++.+++++.|+|.++||+++
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 45677888899999888788999999999999999999999999999875 9999999999999999999999999999
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|++|+.+.++.|.+.++|+++|+++
T Consensus 95 ~~~G~~~~~~~G~~~~~l~~~l~~~ 119 (121)
T 2j23_A 95 FKNGQKIDTVVGADPSKLQAAITQH 119 (121)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHH
T ss_pred EECCeEEeeEcCCCHHHHHHHHHHh
Confidence 9999999999999999999999875
No 163
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.57 E-value=5.5e-15 Score=127.23 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=88.6
Q ss_pred eeeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.. ++|...+. ..++++++||++||++|+.+.|.++++..+++++.|+.||++ +.+++++.|+|.++||++++
T Consensus 7 v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 85 (111)
T 2pu9_C 7 VTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 85 (111)
T ss_dssp EEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEEE
T ss_pred cEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEEE
Confidence 334443 56666665 367899999999999999999999999999999999999998 78999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|.+.++|.++|+++
T Consensus 86 ~~G~~~~~~~G~~~~~l~~~l~~~ 109 (111)
T 2pu9_C 86 KENSVVGEVTGAKYDKLLEAIQAA 109 (111)
T ss_dssp SSSSEEEEEESSCHHHHHHHHHHH
T ss_pred eCCcEEEEEcCCCHHHHHHHHHHh
Confidence 999999999999889999999875
No 164
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.57 E-value=5.7e-15 Score=132.90 Aligned_cols=102 Identities=23% Similarity=0.427 Sum_probs=92.3
Q ss_pred ceeeehhhhHHhhhcc----CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVS----LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~----~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+. .+++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 104 (139)
T 3d22_A 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFF 104 (139)
T ss_dssp TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESEEE
T ss_pred cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccEEE
Confidence 4566666777877663 467899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+++.++.|.+.++|+++|+++
T Consensus 105 ~~~~G~~~~~~~G~~~~~l~~~l~~~ 130 (139)
T 3d22_A 105 FLRDGQQVDKLVGANKPELHKKITAI 130 (139)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEcCCeEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999889999999875
No 165
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=99.57 E-value=2.3e-15 Score=134.95 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred hHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCCCcE--EEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYPSIN--FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~~~--~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++|...+...+.+++.|++.| |++|+.+.|.++++..+|+++. |++||+|+.++++.+|+|+++||+++|++|+++
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 667777777777889999877 9999999999999999996688 999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.++|+++|+++
T Consensus 105 ~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp -CEESCCCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999999875
No 166
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=8.4e-14 Score=123.07 Aligned_cols=134 Identities=22% Similarity=0.384 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+..+|.++...|++++|+..++++++.+|.+ ...+..++.++...|++++|+.++++++...|.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc--------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 35668999999999999999999999999887 7789999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
...+..+ |.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|+++++.+|+.
T Consensus 69 ~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 69 AEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHH------------HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8887765 9999999999999999999999999999999999999999999999999999999998863
No 167
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.56 E-value=8.2e-15 Score=124.91 Aligned_cols=95 Identities=28% Similarity=0.505 Sum_probs=88.0
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+ ..+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 445677777 778999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 88 ~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEESCCCHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999875
No 168
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=99.56 E-value=8.6e-15 Score=124.79 Aligned_cols=99 Identities=26% Similarity=0.418 Sum_probs=89.6
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.+.+.|...+. ..+++++.||++||++|+.+.|.++++..++ +++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 4 ~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 83 (106)
T 1xwb_A 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKN 83 (106)
T ss_dssp ECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcC
Confidence 4555567777665 5779999999999999999999999999999 679999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|.+.+.|+++|+++
T Consensus 84 G~~~~~~~g~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 84 GVKVEEFAGANAKRLEDVIKAN 105 (106)
T ss_dssp TEEEEEEESCCHHHHHHHHHHT
T ss_pred CcEEEEEcCCCHHHHHHHHHHh
Confidence 9999999999889999999875
No 169
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=99.56 E-value=3.7e-15 Score=133.22 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=89.7
Q ss_pred ccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------ccCcchhhhCCc
Q 005108 609 GGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------DESPGVAHAENV 679 (714)
Q Consensus 609 ~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------d~~~~l~~~~~v 679 (714)
.+.+..+ +.++|...+.. +++|+||++||++|+.+.|.++++..+++ +.|+.||+ ++.+++++.|+|
T Consensus 15 ~~~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v 90 (135)
T 3emx_A 15 DGRLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV 90 (135)
T ss_dssp TTEEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred cCceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence 3455555 44777777765 99999999999999999999999999998 99999999 889999999999
Q ss_pred cccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 680 RIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.++||+++|++|+++.++.|. +.+.++.+++++
T Consensus 91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~ 124 (135)
T 3emx_A 91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREI 124 (135)
T ss_dssp CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999 999999998875
No 170
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.56 E-value=6.1e-15 Score=126.37 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=89.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+...+++++.||++||++|+.+.|.++++...++ .+.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (109)
T 3tco_A 10 TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVD 89 (109)
T ss_dssp CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEEE
Confidence 446777777778899999999999999999999999999998 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|.++|+++
T Consensus 90 ~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 90 SLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred eeeccCCHHHHHHHHHHH
Confidence 99999 999999999875
No 171
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=9.3e-14 Score=134.46 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
++.+|.++...|++++|+..|++++ ++ + ..+++.+|.++...|++++|+.+|++++.++|++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-H--------------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 4568999999999999999999996 33 3 67899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHHhCCHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----------------VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~ 532 (714)
.++..+ |.++...|++++|+.+|+++++..|.+. .+++++|.+|..+|++++
T Consensus 72 ~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 72 VAYFQR------------GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHHHHH------------HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 888766 9999999999999999999999888766 999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 005108 533 SVEDSNQALLIQPNY 547 (714)
Q Consensus 533 A~~~~~~al~~~p~~ 547 (714)
|+..|+++++++|++
T Consensus 140 A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcCccc
Confidence 999999999999986
No 172
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.56 E-value=1.2e-14 Score=128.48 Aligned_cols=95 Identities=24% Similarity=0.406 Sum_probs=86.5
Q ss_pred hhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.++|.. ++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 29 ~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 108 (128)
T 2o8v_B 29 DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 108 (128)
T ss_dssp TTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEeCCEEEE
Confidence 355654 44567899999999999999999999999999997 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 109 ~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 109 TKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 999999999875
No 173
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.56 E-value=1.1e-14 Score=125.48 Aligned_cols=100 Identities=26% Similarity=0.445 Sum_probs=87.1
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
..+...+....++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 8 ~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G 87 (112)
T 1t00_A 8 KHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGG 87 (112)
T ss_dssp EEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred EecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCC
Confidence 3444433333455567799999999999999999999999999995 599999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHhhh
Q 005108 692 SRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+.++.|. +.+.|+++|+++
T Consensus 88 ~~~~~~~G~~~~~~l~~~l~~~ 109 (112)
T 1t00_A 88 EVAKTIVGAKPKAAIVRDLEDF 109 (112)
T ss_dssp EEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999 899999998875
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.2e-14 Score=147.72 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=143.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..+..++..+...|++++|+..|+++++.+|+ ...++.++|.+|..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------ 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------ 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------
Confidence 34566777788889999999999999998887 46677778999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+++.+|.++..+|++++|+..|+++++++|++...+... ..... +..++..+........+
T Consensus 72 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~------------~~~~~---~~~~~~~~~~~~~~~~~ 134 (281)
T 2c2l_A 72 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD------------IPSAL---RIAKKKRWNSIEERRIH 134 (281)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH------------HHHHH---HHHHHHHHHHHHHTCCC
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH------------HHHHH---HHHHHHHHHHHHHHHHh
Confidence 77888889999999999999999999888887653211100 00011 12222333333344566
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL-EKWADAVRDFEVLRR 576 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 576 (714)
.+..+...++..+ .|++++|++.|+++++++|++......++.++.+. +++++|.+.|+++.+
T Consensus 135 ~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 135 QESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777776654 68889999999999888888887777777777666 678888888887755
No 175
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.55 E-value=1.6e-14 Score=123.58 Aligned_cols=94 Identities=26% Similarity=0.464 Sum_probs=85.5
Q ss_pred hHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
++|.. ++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 10 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 89 (108)
T 2trx_A 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89 (108)
T ss_dssp TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEEE
Confidence 45553 44567799999999999999999999999999997 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.++|+++|+++
T Consensus 90 ~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 90 KVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EESCCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHh
Confidence 9999 999999999875
No 176
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.55 E-value=9.7e-15 Score=131.44 Aligned_cols=100 Identities=27% Similarity=0.380 Sum_probs=89.6
Q ss_pred eeeehhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.. +.|. .++...++++|.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|+
T Consensus 8 v~~l~~-~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 86 (140)
T 3hz4_A 8 IIEFED-MTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFC 86 (140)
T ss_dssp EEEECH-HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEE
T ss_pred eEEcch-HhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEe
Confidence 334444 4555 6666788999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 87 ~G~~~~~~~G~~~~~~l~~~l~~~ 110 (140)
T 3hz4_A 87 HGRPVWEQVGQIYPSILKNAVRDM 110 (140)
T ss_dssp TTEEEEEEESSCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.2e-14 Score=139.27 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=118.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-----
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----- 514 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----- 514 (714)
.+......+++++|.+.++......+.... .+..+|..++..|+|++|+.+|++++++.|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAF------------DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 344555666777666666544333222222 333559999999999999999999999988887
Q ss_pred -----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 515 -----------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 515 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.+++++|.+|..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++..
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 005108 584 IAESLFHAQVSLKKSRGEE 602 (714)
Q Consensus 584 ~~~~L~~~~~~l~~~~~~~ 602 (714)
++..+..+...+++..+.+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998887766544
No 178
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.55 E-value=1e-14 Score=127.91 Aligned_cols=100 Identities=28% Similarity=0.437 Sum_probs=89.5
Q ss_pred eeehhhhHHhhhcc----CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 613 EEVSSLEQFRAAVS----LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 613 ~~i~~~e~~~~~i~----~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
..+.+.+.|...+. ..++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (122)
T 2vlu_A 15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFM 94 (122)
T ss_dssp EEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred eeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence 34455567776664 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|...++|+++|+++
T Consensus 95 ~~G~~~~~~~G~~~~~l~~~l~~~ 118 (122)
T 2vlu_A 95 KEGDVKDRVVGAIKEELTAKVGLH 118 (122)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHH
T ss_pred eCCEEEEEEeCcCHHHHHHHHHHH
Confidence 999999999998888899999875
No 179
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.55 E-value=9.1e-15 Score=124.42 Aligned_cols=94 Identities=21% Similarity=0.421 Sum_probs=86.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|..++...+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 45666666778999999999999999999999999999975 99999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|+++|+++
T Consensus 88 ~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADV 103 (105)
T ss_dssp ESCCCHHHHHHHTTTT
T ss_pred ecCCCHHHHHHHHHHH
Confidence 999 899999998875
No 180
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.55 E-value=7.4e-15 Score=132.23 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=85.2
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
..+.+.++|...+. ..++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 6 ~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 85 (142)
T 1qgv_A 6 PHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFF 85 (142)
T ss_dssp CBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEE
T ss_pred hccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEE
Confidence 34556677776543 46799999999999999999999999999984 5999999999999999999999999999999
Q ss_pred CCeEEE---------EEcCC--CHHHHHHHHhhh
Q 005108 690 NGSRMK---------EIVCP--SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~---------~~~g~--~~~~l~~~~~~~ 712 (714)
+|+.+. ++.|. +.++|.+.|+++
T Consensus 86 ~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 86 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp TTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 999987 45566 488888888764
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.2e-14 Score=139.50 Aligned_cols=171 Identities=12% Similarity=0.006 Sum_probs=122.6
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+......++++++.+.+.......+. .+..+..+|..++..|++++|+..|++++.+.|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 75 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQ--------------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD 75 (198)
T ss_dssp ------------CCCSGGGCCHHHHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence 444555667777776666554433322 377899999999999999999999999999988876100
Q ss_pred HH----HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 472 VL----LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 472 ~~----l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
.. .........+..+|.++...|++++|+.+|+++++++|.+..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 00 00000112223459999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKWADAV-RDFEVLRR 576 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~-~~~~~al~ 576 (714)
..++..++.++..+++.+++. ..|.+++.
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887 45555443
No 182
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=99.55 E-value=1e-14 Score=126.97 Aligned_cols=97 Identities=18% Similarity=0.343 Sum_probs=87.3
Q ss_pred hhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC----C
Q 005108 617 SLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN----G 691 (714)
Q Consensus 617 ~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~----G 691 (714)
+.+.|.. +....+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++ |
T Consensus 11 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~~~~~G 90 (118)
T 2f51_A 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEI 90 (118)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTEE
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCCCcc
Confidence 4556663 4445779999999999999999999999999999889999999999999999999999999999998 9
Q ss_pred eEEEEEcCCCHHHHHHHHhhhc
Q 005108 692 SRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
+++.++.|...++|+..|+++.
T Consensus 91 ~~~~~~~G~~~~~l~~~~~~~~ 112 (118)
T 2f51_A 91 KTLDQFVGADVSRIKADIEKFK 112 (118)
T ss_dssp EEEEEEESCCHHHHHHHHHHHC
T ss_pred eEEEeecCCCHHHHHHHHHHhh
Confidence 9999999997788999998874
No 183
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.6e-14 Score=122.23 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..+|..++..|++++|+..|+++++++|++..++..+ |.++...|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR------------AAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 66899999999999999999999999999999999988866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQ------PNYTKALLRRAASNSKL 561 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 561 (714)
..+|+.+|.++..+|++++|+..|+++++++ |++..++..++.+..++
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999888888877553
No 184
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=99.55 E-value=2.2e-14 Score=138.47 Aligned_cols=103 Identities=22% Similarity=0.407 Sum_probs=91.5
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.+.+.|..++... .+++|+||++||++|+.+.|.+.++..+|+++.|++||++ ++.++..|+|.++||++
T Consensus 99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PTl~ 177 (217)
T 2trc_P 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPTLL 177 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSEEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCEEE
Confidence 3556665667787776433 6899999999999999999999999999999999999999 78899999999999999
Q ss_pred EEeCCeEEEEEcCC-CH-------HHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP-SR-------DMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~~-------~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ +. +.|+.+|.+++
T Consensus 178 ~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred EEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 99999999999999 54 89999999875
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=4.9e-16 Score=169.48 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=126.4
Q ss_pred HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------------
Q 005108 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------------ 513 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------ 513 (714)
.++++++|+..|+++++..|+....+.. +|..+++.|+|++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~------------~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKE------------KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH
Confidence 4567778888888777777666666554 4999999999999999999999999998
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 514 ---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
..+|+++|.||.++|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..+..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccc
Q 005108 591 AQVSLKKSRGE 601 (714)
Q Consensus 591 ~~~~l~~~~~~ 601 (714)
++..+++....
T Consensus 394 ~~~~~~~~~~a 404 (457)
T 1kt0_A 394 CQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888766543
No 186
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=9.5e-15 Score=130.45 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=86.7
Q ss_pred ceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+..+ +.++|...+... .+++|+||++||++|+.+.|.++++..+++++.|+.||+++.. +.|+|.++||+++
T Consensus 11 ~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 11 ELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCLPTIFV 86 (135)
T ss_dssp SCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCCSEEEE
T ss_pred ceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCCCEEEE
Confidence 45566 567777766442 4899999999999999999999999999999999999999875 7899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|++|+.+.+++|. +.++|+.+|.+++
T Consensus 87 ~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 87 YKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp ESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred EECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 9999999999998 5899999998875
No 187
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=8.9e-14 Score=124.18 Aligned_cols=123 Identities=23% Similarity=0.369 Sum_probs=111.8
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.++.+...+..+ |..++..|++++|+.+|+++++.+|++..+++++|.++..+|++++|+..|+++++
T Consensus 4 ~~~~~~~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 4 MKSPSAQELKEQ------------GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp --CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHH------------HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355666666655 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhhh
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD-----DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~L~~~~~~l~~ 597 (714)
++|++..+++.+|.++..+|++++|+.+|+++++++|+ +..+...+..+......
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 78888888877766544
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.7e-13 Score=152.58 Aligned_cols=175 Identities=10% Similarity=-0.048 Sum_probs=162.0
Q ss_pred HHcCC-HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhccCC
Q 005108 397 LKLHQ-LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR----------FENAVTAAEKAGQIDP 465 (714)
Q Consensus 397 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p 465 (714)
.+.++ .++|++.+.+++..+|++ ..+|+.++.++..+++ ++++++.++++++.+|
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~--------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDF--------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh--------------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 34444 467899999999999999 8899999999999998 9999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG-QWERSVEDSNQALL 542 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 542 (714)
++..+|... +.++.+.+ ++++|+++++++++++|.+..+|.+++.++.++| .+++++++++++++
T Consensus 105 K~y~aW~hR------------~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 105 KSYGTWHHR------------CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp TCHHHHHHH------------HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred CCHHHHHHH------------HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999865 89999999 7799999999999999999999999999999999 99999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 543 IQPNYTKALLRRAASNSKL--------------EKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+|.+..+|..++.++.++ +++++|+++++++++++|++..++..+..+......
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999999999999999885 778999999999999999999999999887766543
No 189
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.54 E-value=2.2e-13 Score=139.27 Aligned_cols=175 Identities=14% Similarity=0.040 Sum_probs=138.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
...+..+...|++++|++.++++++..+... ........++.+|.++...|++++|+.+|++++++.+....
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--------EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH--------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCCh--------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3477888899999999999999888776541 01112345677899999999999999999999986554321
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh---ccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL---RFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.+. .+..+..+|.+|...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 151 ~~~------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 151 VYQ------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp TTH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 110 01122345999999999999999999999 4455542 6899999999999999999999999998
Q ss_pred hCCC------CHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhC
Q 005108 543 IQPN------YTKALLRRAASNSKLEKWADA-VRDFEVLRREL 578 (714)
Q Consensus 543 ~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~ 578 (714)
+.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7533 268899999999999999999 88899998754
No 190
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=99.53 E-value=1.2e-14 Score=127.91 Aligned_cols=95 Identities=28% Similarity=0.404 Sum_probs=85.9
Q ss_pred hHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+. .+++++++||++||++|+.+.|.++++..+++++.|+.||++ +.+++++.|+|.++||++++++|+.+.
T Consensus 26 ~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 105 (124)
T 1faa_A 26 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVG 105 (124)
T ss_dssp TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEEE
T ss_pred hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEEE
Confidence 45655554 567899999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHhhhc
Q 005108 696 EIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~~~~ 713 (714)
++.|...++|.++|+++.
T Consensus 106 ~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 106 EVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EEESSCHHHHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHhh
Confidence 999998899999998763
No 191
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.53 E-value=8.8e-15 Score=129.51 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=84.4
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcC
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC 699 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g 699 (714)
+.......++++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+++.++.|
T Consensus 35 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G 114 (128)
T 3ul3_B 35 INGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDH 114 (128)
T ss_dssp SSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESS
T ss_pred HHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecC
Confidence 34444567799999999999999999999999999986 59999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.++|+++|+++
T Consensus 115 ~~~~~~l~~~l~~~ 128 (128)
T 3ul3_B 115 FVSSNDLIALIKKH 128 (128)
T ss_dssp CCCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhC
Confidence 8 999999999864
No 192
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=99.53 E-value=1.1e-14 Score=129.61 Aligned_cols=101 Identities=19% Similarity=0.392 Sum_probs=89.8
Q ss_pred ceeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..+.+.+.+...+.. ..+++|+||++||++|+.+.|.++++..++ ++.|+.||+++.+++++.|+|.++||+++|
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 45666666778777755 358999999999999999999999998887 689999999999999999999999999999
Q ss_pred e--CCe--EEEEEcCCCHHHHHHHHhhh
Q 005108 689 K--NGS--RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~--~G~--~~~~~~g~~~~~l~~~~~~~ 712 (714)
+ +|+ ++.++.|.+.++|+++|+++
T Consensus 100 ~~~~g~g~~~~~~~G~~~~~l~~~l~~~ 127 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGANQNDIEKAFQKY 127 (133)
T ss_dssp EEETTEEEEEEEEESCCHHHHHHHHHHH
T ss_pred EecCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 7 999 89999999999999999875
No 193
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.53 E-value=3e-14 Score=124.31 Aligned_cols=101 Identities=26% Similarity=0.344 Sum_probs=89.5
Q ss_pred eeeehhhhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
.....+.++|... +...+++++.||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 14 ~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 93 (119)
T 1w4v_A 14 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93 (119)
T ss_dssp EEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred EEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEe
Confidence 3444555667664 4556799999999999999999999999999885 6999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 94 ~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 94 NGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
No 194
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=1e-13 Score=122.43 Aligned_cols=106 Identities=31% Similarity=0.390 Sum_probs=96.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------HHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------WRA 312 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a 312 (714)
+.+.++..+|..+++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999998765 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEV 345 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 345 (714)
|..+|.++..+|++++|+.+|++++. .+++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 99999999999999999999999987 4555443
No 195
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=99.53 E-value=1.5e-14 Score=124.39 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=86.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+. .+++++.||++||++|+.+.|.++++..++ +++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 3456666665 679999999999999999999999999887 36999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhhc
Q 005108 693 RMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
.+.++.|. +.+.|.++|++.+
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~a 111 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQA 111 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHHC
T ss_pred EEEeccCCcCHHHHHHHHHhcC
Confidence 99999999 9999999998753
No 196
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.53 E-value=1.5e-14 Score=122.63 Aligned_cols=94 Identities=27% Similarity=0.512 Sum_probs=86.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEc
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~ 698 (714)
+.|...+...+++++.||++||++|+.+.|.++++...++++.|+.+|+++.+++++.|+|.++||+++|++|+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 86 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEII 86 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhcc
Confidence 45666666677999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHHhhh
Q 005108 699 CP-SRDMLEHSVRHY 712 (714)
Q Consensus 699 g~-~~~~l~~~~~~~ 712 (714)
|. +.+.|.++|+++
T Consensus 87 g~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 87 GAVPREEIEIRIKNL 101 (104)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 99 999999999875
No 197
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.53 E-value=2.6e-14 Score=122.04 Aligned_cols=94 Identities=26% Similarity=0.534 Sum_probs=85.3
Q ss_pred hHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|... ....+++++.||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 9 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 88 (107)
T 1dby_A 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCET 88 (107)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEEE
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEEE
Confidence 455554 3556789999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.++|+++|+++
T Consensus 89 ~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 89 IIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EESCCCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 9999 999999999875
No 198
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.53 E-value=2.9e-14 Score=121.66 Aligned_cols=94 Identities=23% Similarity=0.417 Sum_probs=85.4
Q ss_pred hHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
++|... ....+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 10 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 89 (107)
T 2i4a_A 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDK 89 (107)
T ss_dssp TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEEE
Confidence 455543 3567799999999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|+++
T Consensus 90 ~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 90 KVGALPKSQLKAWVESA 106 (107)
T ss_dssp EESCCCHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHhc
Confidence 9999 999999999875
No 199
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.52 E-value=2.6e-14 Score=125.26 Aligned_cols=94 Identities=26% Similarity=0.461 Sum_probs=81.0
Q ss_pred hHHh-hhccCCCceEEEeecCCCc--------------cccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCcccc
Q 005108 619 EQFR-AAVSLPGVSVVHFKSASNL--------------HCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIV 682 (714)
Q Consensus 619 e~~~-~~i~~~~~~vv~f~a~~c~--------------~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~ 682 (714)
++|. .++..+++++++||++||+ +|+.+.|.++++..+++ ++.|++||+++.+++++.|+|.++
T Consensus 11 ~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 90 (123)
T 1oaz_A 11 DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 90 (123)
T ss_dssp TTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCCBS
T ss_pred hhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcc
Confidence 4565 3456678999999999999 99999999999998886 599999999999999999999999
Q ss_pred ceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 683 PTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 683 Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
||+++|++|+.+.++.|. +.++|+++|+++
T Consensus 91 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 91 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp SEEEEEESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999 999999999875
No 200
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.52 E-value=2.1e-14 Score=130.60 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=90.7
Q ss_pred ceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
....+.. +.|...+...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 39 ~v~~l~~-~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 117 (148)
T 3p2a_A 39 EVINATA-ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYR 117 (148)
T ss_dssp CCEECCT-TTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred CceecCH-HHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEE
Confidence 3333333 6777777778899999999999999999999999999984 6999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 118 ~G~~~~~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 118 NGKMIDMLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp TTEEEEEESSCCCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
No 201
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=99.52 E-value=5.4e-14 Score=137.35 Aligned_cols=103 Identities=23% Similarity=0.396 Sum_probs=90.1
Q ss_pred cceeeehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.+.+.|...+.. ..+++|+||++||++|+.+.|.+.+|..+|+++.|++||++. +.++..|+|.++||++
T Consensus 112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~PTll 190 (245)
T 1a0r_P 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLPTLL 190 (245)
T ss_dssp CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCSEEE
T ss_pred CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCCEEE
Confidence 355666666788877743 568999999999999999999999999999999999999988 7899999999999999
Q ss_pred EEeCCeEEEEEcCC-C-------HHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP-S-------RDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~-------~~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ . .+.|+.+|.+++
T Consensus 191 ~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 191 VYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp EEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred EEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 99999999999997 2 457999998865
No 202
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.52 E-value=4.9e-13 Score=134.50 Aligned_cols=260 Identities=14% Similarity=0.070 Sum_probs=191.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
.+++.++.+ +..|-.|+|..++.... +..|.+ ....+.+.++|+.+|++.... .++....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence 345555543 45677899999998543 344443 456677889999999987421 12223334455554
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~ 397 (714)
.+. ++ |+..|++.+....+... .++.++.++...|++++|++.+.+.+..+| ....+.+...+.++.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~~~~~~-------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDKQNSPY-------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTSCCCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHhcCCCCcH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 88889888764322221 123566778889999999999999998887 346777788999999
Q ss_pred HcCCHHHHHHHhhccccCCCC-----CCCchhhhhhhhhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPS-----TVSSSQTRFFGMLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~ 470 (714)
++|+.+.|.+.++++.+.+|+ + ...+...-+++.+..| ++++|..+|+++.+..|+....
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d-------------~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDN-------------EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHH-------------HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccch-------------HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 999999999999999998882 2 1333444455566667 9999999999998888862222
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----------DPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
...+ . ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++
T Consensus 215 ~lLl------------n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 215 LGLL------------N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHH------------H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HHHH------------H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 2222 3 799999999999999988876 48899999999999999998 999999999
Q ss_pred HHhCCCCHHHH
Q 005108 541 LLIQPNYTKAL 551 (714)
Q Consensus 541 l~~~p~~~~~~ 551 (714)
.+.+|+++.+.
T Consensus 280 ~~~~P~hp~i~ 290 (310)
T 3mv2_B 280 VKLDHEHAFIK 290 (310)
T ss_dssp HHTTCCCHHHH
T ss_pred HHhCCCChHHH
Confidence 99999998544
No 203
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=7.9e-14 Score=121.99 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 005108 565 ADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~ 583 (714)
++|+..|+++++++|++..
T Consensus 102 ~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCcCCCC
Confidence 9999999999999998754
No 204
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=99.52 E-value=6.5e-14 Score=121.24 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=88.3
Q ss_pred eeeehhhhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+. .++|... +...+++++.||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++|+
T Consensus 9 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 87 (115)
T 1thx_A 9 VITIT-DAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 87 (115)
T ss_dssp EEECC-GGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEee-ccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEc
Confidence 33443 3556654 4567799999999999999999999999999997 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|+++|+++
T Consensus 88 ~G~~~~~~~g~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 88 GEQILDSTEGVISKDKLLSFLDTH 111 (115)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
No 205
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=2.2e-13 Score=139.28 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=136.1
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+..+...|++++|+..++++++..+.... .......+..+|.++...+++++|+.+|++++.+.+.....+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPE--------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHH--------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChH--------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 577888999999999999999987766511 000123445689999999999999999999998654433221
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-------DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
. .+..+..+|.+|...|++++|+.+|+++++. .+....+++++|.+|.++|++++|++++++++++.
T Consensus 153 ~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 153 Q------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 1112234599999999999999999999952 22235689999999999999999999999999875
Q ss_pred CCC------HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Q 005108 545 PNY------TKALLRRAASNSKLE-KWADAVRDFEVLRREL 578 (714)
Q Consensus 545 p~~------~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~ 578 (714)
+.. ..+++.+|.+|.++| ++++|+++|++++++.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 433 789999999999999 5799999999998753
No 206
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.51 E-value=4.3e-14 Score=120.14 Aligned_cols=94 Identities=30% Similarity=0.534 Sum_probs=84.9
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|...+ ...+++++.||++||++|+.+.|.++++..++++ +.|+.+|+++.+++++.|+|.++||++++++|+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (105)
T 1fb6_A 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKES 87 (105)
T ss_dssp TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEEE
Confidence 4455533 4567899999999999999999999999999975 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|+++|+++
T Consensus 88 ~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 88 IIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHhh
Confidence 9999 999999999875
No 207
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=120.18 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|.++...|++++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++.+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 56777778888888888888888888887777777766655 777777888888888888888777777
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77788888888888888888888888887777777777777777776653
No 208
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.6e-13 Score=127.15 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
.+..++.+|.+++..|++++|+.+|+++++++|++..++..+ |.+|...|++++|+.+|+++++++|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------AAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 477899999999999999999999999999999999988876 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+..+|+++|.+|..+|++++|+.+|+++++++|++..+++.++....
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887776665543
No 209
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.51 E-value=1.5e-14 Score=157.82 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=131.1
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH----HHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE----VAVL 473 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 473 (714)
.++++++|+..|+.+++..|.. +..++.+|..++..|+|++|+..|+++++++|.+.. ....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~--------------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ--------------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence 4566777777777777766665 788999999999999999999999999999998830 0000
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
..-.....+.++|.+|.++|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..
T Consensus 312 -~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 312 -SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0001122233559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHHHHH-HHHHHH
Q 005108 554 RAASNSKLEKWADAVR-DFEVLR 575 (714)
Q Consensus 554 la~~~~~~g~~~eA~~-~~~~al 575 (714)
++.++.+++++++|.. .|++++
T Consensus 391 l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 344433
No 210
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=3.9e-13 Score=118.17 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|..+...|++++|+..|++++..+|++..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 45566666667677777777777777766666666655544 666666667777777776666666666
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..+++.+|.++...|++++|+.+|+++++++|++..++..++.++..+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666777777666666666666666666666666666553
No 211
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.50 E-value=3.1e-14 Score=121.86 Aligned_cols=94 Identities=21% Similarity=0.413 Sum_probs=86.4
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|..++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 9 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 88 (109)
T 2yzu_A 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVL 88 (109)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeeeE
Confidence 4555666667899999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|.++|+++
T Consensus 89 ~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 89 VGAQPKRNYQAKIEKH 104 (109)
T ss_dssp ESCCCHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 899999999875
No 212
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=5.5e-14 Score=131.92 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=117.2
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+...|++++|+..++++++.+|.+ ..+|+.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l- 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN--------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL- 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHH-
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH-
Confidence 456789999999999999999998 88999999999999999999999999999999999888766
Q ss_pred hHHHHHHHHHHHhH-HhhCcCH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 476 NVKLVARARARGND-LFKSERF--TEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 476 ~l~~~~~~~~~g~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.+ +...|++ ++|+.+|+++++.+|++..+++.+|.+|...|++++|+..|+++++++|++....
T Consensus 85 -----------a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 85 -----------ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp -----------HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred -----------HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888 8899999 9999999999999999999999999999999999999999999999999976443
No 213
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=99.49 E-value=5.2e-14 Score=123.15 Aligned_cols=99 Identities=23% Similarity=0.383 Sum_probs=87.2
Q ss_pred eeehhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.. +.|. .++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 15 ~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 93 (121)
T 2i1u_A 15 IKVTD-ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKD 93 (121)
T ss_dssp EECCT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred eecCH-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEEC
Confidence 33444 4444 455667799999999999999999999999999996 59999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+.+.++.|. +.+.|.++|+++
T Consensus 94 g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 94 GQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp TEEEEEEESCCCHHHHHHHTCSC
T ss_pred CEEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 899999998864
No 214
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-13 Score=119.51 Aligned_cols=111 Identities=23% Similarity=0.466 Sum_probs=106.0
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.++...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
++|+.+|+++++++|++..++..+..++...
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999998888877654
No 215
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.5e-14 Score=124.41 Aligned_cols=94 Identities=20% Similarity=0.272 Sum_probs=85.0
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC-----CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.|...+ ...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 15 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 94 (133)
T 1x5d_A 15 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE 94 (133)
T ss_dssp THHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTE
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCC
Confidence 5566544 557799999999999999999999999998874 5999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|+++
T Consensus 95 ~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 95 SPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHHH
Confidence 99999999 999999999874
No 216
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=99.49 E-value=4e-14 Score=125.05 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhC------CCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRY------PSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~------~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+.+.|...+ ...++++|+||++||++|+.+.|.++++...+ +++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 345666666 45789999999999999999999999997654 35999999999999999999999999999999
Q ss_pred CCeEE--EEEcCC-CHHHHHHHHhhhc
Q 005108 690 NGSRM--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 690 ~G~~~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|+.+ .++.|. +.+.|.++|++++
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~s 127 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQNT 127 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred CCCCCCceEecCCccHHHHHHHHHhcC
Confidence 98775 477788 9999999998864
No 217
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=3.7e-14 Score=127.68 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=87.7
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEE
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
+..+ +.+.|...+...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++..++++.|+|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 3344 456777777778899999999999999999999999988874 38999999999999999999999999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|++|+ +.++.|. +.+.|.++|+++
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~ 122 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREV 122 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHH
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHh
Confidence 99999 7788888 999999999875
No 218
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1e-12 Score=113.19 Aligned_cols=111 Identities=27% Similarity=0.520 Sum_probs=105.2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+|.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 562 EKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 562 g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
|++++|+.+|+++++++|++..+...+..+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988887664
No 219
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=99.48 E-value=7e-14 Score=125.84 Aligned_cols=94 Identities=30% Similarity=0.519 Sum_probs=80.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|...+...+.++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 41 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 120 (140)
T 1v98_A 41 KGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATW 120 (140)
T ss_dssp --------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEEE
Confidence 4566555444449999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|.++|+++
T Consensus 121 ~G~~~~~~l~~~i~~~ 136 (140)
T 1v98_A 121 VGASPRRVLEERLRPY 136 (140)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 899999999875
No 220
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=1.5e-12 Score=114.43 Aligned_cols=113 Identities=34% Similarity=0.578 Sum_probs=108.1
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..+++.+|.++..+|++
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
++|+.+|+++++++|++..+...+..++..+++
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888877654
No 221
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=119 Identities=29% Similarity=0.397 Sum_probs=109.7
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
...+.+...+..+ |..++..|++++|+.+|+++++.+|++ ..+++++|.+|..+|++++|+.+|+
T Consensus 22 ~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 22 TPGASSVEQLRKE------------GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp CTTCCCHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3456667666655 999999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 539 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776653
No 222
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.9e-12 Score=132.24 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=140.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP-----QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 426 (714)
..+...+..+...|++++|++.++++++..+.... .++..++.++...|++++|+.+|+++++..+....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----- 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----- 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----
Confidence 44556677788999999999999999998775321 33556888999999999999999999987655411
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh---ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 427 FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG---QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 427 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
......++..+|.+|...|++++|+.+|++++ +..+++..... ..+.++|.+|...|+|++|+.+|
T Consensus 151 ---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~--------~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 151 ---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV--------KVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp ---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH--------HHHHhHHHHHHHHhhHHHHHHHH
Confidence 11236689999999999999999999999999 55565543220 11234599999999999999999
Q ss_pred HHhhccCCC------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHh
Q 005108 504 GEGLRFDPS------NSVLYCNRAACWFKLGQWERS-VEDSNQALLI 543 (714)
Q Consensus 504 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 543 (714)
++++++.+. ...+++++|.+|..+|++++| ..+|++++.+
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999987532 278999999999999999999 7889999864
No 223
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=1.1e-13 Score=124.47 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-------CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-------NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
+..++.+..+|..++..|+|++|+..|+++++++|+ +.... ....+.++|.++.++|+|++|+..|
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~-------~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGF-------DAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccc-------hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456888999999999999999999999999999999 43310 0112335699999999999999999
Q ss_pred HHhhcc-------CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 504 GEGLRF-------DPSNSVLY----CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 504 ~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+++|++ +|++..+| +++|.++..+|++++|+..|+++++++|++..+.-.+.
T Consensus 81 ~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 81 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999 99999999 99999999999999999999999999998865444333
No 224
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.47 E-value=4.5e-14 Score=119.72 Aligned_cols=85 Identities=13% Similarity=0.237 Sum_probs=70.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccC--cchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDES--PGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
.+.++|+||++||++|+++.+.+....... ..+.+++||++++ +.++..|+|+++|||++|++|+++.|++|+ +
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 357899999999999999987554332221 1267899999986 479999999999999999999999999999 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+++..+|+++
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 225
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.47 E-value=9.4e-15 Score=129.75 Aligned_cols=102 Identities=27% Similarity=0.460 Sum_probs=90.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 94 (130)
T 1wmj_A 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94 (130)
T ss_dssp SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCCC
T ss_pred ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceEE
Confidence 45556666777766643 67899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+.+.++.|.+.++|+++|+++
T Consensus 95 ~~~~g~~~~~~~g~~~~~l~~~l~~~ 120 (130)
T 1wmj_A 95 FIKDGAEADKVVGARKDDLQNTIVKH 120 (130)
T ss_dssp BCTTTTCCBCCCTTCTTTHHHHHHHH
T ss_pred EEeCCeEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999888899998875
No 226
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.47 E-value=1.2e-13 Score=124.37 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=78.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE-eCCeEEEEEcCC-CHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDM 704 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~ 704 (714)
.++++|+||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++| ++|+.+ ++.|. +.+.
T Consensus 51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~ 129 (141)
T 3hxs_A 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQ 129 (141)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCE-EEESCCCHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHHH
Confidence 5789999999999999999999999999997 599999999999999999999999999999 777766 88888 9999
Q ss_pred HHHHHhhh
Q 005108 705 LEHSVRHY 712 (714)
Q Consensus 705 l~~~~~~~ 712 (714)
|+++|+++
T Consensus 130 l~~~l~~~ 137 (141)
T 3hxs_A 130 LKGYIDKV 137 (141)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999875
No 227
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.46 E-value=8.9e-13 Score=121.60 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+..+|.++...|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+.+|+++++.+|+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345668888999999999999999999988887 778999999999999999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHh
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC--WFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~ 543 (714)
+..++..+ |.++...|++++|+.+|+++++++|.+..++..++.+ +...|++++|++.++++..+
T Consensus 80 ~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 YIKGYYRR------------AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 98888766 8999999999999999999999999998888555444 88889999999999887654
No 228
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.46 E-value=1.5e-13 Score=134.04 Aligned_cols=96 Identities=25% Similarity=0.447 Sum_probs=88.2
Q ss_pred hhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.++|.. ++...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 3456665 566778999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|+++|+++
T Consensus 98 ~~~~G~~~~~~l~~~l~~~ 116 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDAN 116 (222)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEeccccChHHHHHHHHhh
Confidence 999999 999999999875
No 229
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.46 E-value=7.4e-14 Score=123.15 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=82.7
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEe--cccCcchhhhCCccccceEEEEe-CCeEEEEEcC
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVD--IDESPGVAHAENVRIVPTFKIYK-NGSRMKEIVC 699 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd--~d~~~~l~~~~~v~~~Pt~~~~~-~G~~~~~~~g 699 (714)
.....+++++.||++||++|+.+.|.++++..++ +++.|+.|| +++..++++.|+|.++||+++|+ +|+.+.++.|
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G 101 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQG 101 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecC
Confidence 3445678999999999999999999999999999 579999999 99999999999999999999997 9999999999
Q ss_pred C-CHHHHHHHHhhhc
Q 005108 700 P-SRDMLEHSVRHYS 713 (714)
Q Consensus 700 ~-~~~~l~~~~~~~~ 713 (714)
. +.++|+++|+++.
T Consensus 102 ~~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 102 LMRKNNIETILNSLG 116 (126)
T ss_dssp CCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh
Confidence 8 9999999998753
No 230
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=122.05 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=86.0
Q ss_pred eeeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.. ++|.. ++...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++..++++.|+|.++||+++|+
T Consensus 19 v~~l~~-~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 97 (130)
T 2dml_A 19 VIELTP-SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFG 97 (130)
T ss_dssp SEECCT-TTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEES
T ss_pred cEECCH-HHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEe
Confidence 344443 56666 445677999999999999999999999999999976 999999999999999999999999999997
Q ss_pred CCeE-EEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSR-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.. +.++.|. +.+.|.++|.+.
T Consensus 98 ~~~~~~~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 98 ANKNKPEDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp SCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCHHHHHHHHHHH
Confidence 7766 7888998 899998888764
No 231
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=1.5e-12 Score=114.70 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 558 (714)
.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 459999999999999999999999999988 899999999999999999999999999999999 89999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..+|++++|+..|+++++.+|+++.+...+..+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999887766655443
No 232
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.46 E-value=1.7e-13 Score=122.55 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=78.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE-eCCeEEEEEcCC-CHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRD 703 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~ 703 (714)
..++++|.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~ 115 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKA 115 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE-EEeCCCCHH
Confidence 35689999999999999999999999999997 599999999999999999999999999999 999988 67787 999
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.|+++|+++
T Consensus 116 ~l~~~l~~~ 124 (136)
T 2l5l_A 116 SFKKAIDEF 124 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 233
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.8e-14 Score=123.01 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=82.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.|...+.. .++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+ +
T Consensus 13 ~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~ 89 (126)
T 1x5e_A 13 TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGE-F 89 (126)
T ss_dssp CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEeCCe-E
Confidence 34567766643 38999999999999999999999998886 5999999999999999999999999999999999 5
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.++|.++|+++
T Consensus 90 ~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 90 RRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EECCSCCCHHHHHHHHHTC
T ss_pred EEeecCCCHHHHHHHHHHH
Confidence 788898 999999999875
No 234
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=99.45 E-value=8.3e-14 Score=121.51 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=86.0
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+...+++++.||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 14 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 93 (120)
T 1mek_A 14 KSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDT 93 (120)
T ss_dssp TTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCS
T ss_pred hhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCCc
Confidence 35666667677899999999999999999999999998874 58899999999999999999999999999999998
Q ss_pred E--EEEcCC-CHHHHHHHHhhh
Q 005108 694 M--KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~ 712 (714)
+ .++.|. +.+.|.++|+++
T Consensus 94 ~~~~~~~g~~~~~~l~~~l~~~ 115 (120)
T 1mek_A 94 ASPKEYTAGREADDIVNWLKKR 115 (120)
T ss_dssp SSCEECCCCSSHHHHHHHHHTT
T ss_pred CCcccccCccCHHHHHHHHHhc
Confidence 7 888898 999999999875
No 235
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=3.7e-13 Score=124.30 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
..+..+..+|..++..|++++|+..|++++.+ +|.+..... + .-.....+.++|.++...|+|++|+.+|
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE-L-DRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH-H-HHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH-H-HHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44778999999999999999999999999998 333332100 0 0011122334599999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-KALLRRAASNSKLEKWAD 566 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~e 566 (714)
+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++. .+...++.+..++++..+
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 667777777766655543
No 236
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.45 E-value=2.9e-12 Score=111.48 Aligned_cols=110 Identities=23% Similarity=0.405 Sum_probs=104.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.++...|++++|+.+|+++++..|.+..+++.+|.++...|++++|+.+|+++++..|++..+++.+|.++...|++
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+.+|+++++.+|++..+...+..++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999888877654
No 237
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.45 E-value=9.4e-13 Score=117.43 Aligned_cols=119 Identities=9% Similarity=0.017 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.+++..|++++|+.+|++++..+|++..++..+ |.++...|++++|+.+|+++++++|++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR------------ALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 77899999999999999999999999999999999988876 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPN-----YTKALLRRAASNSKLEKW 564 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~ 564 (714)
+.+++.+|.+|..+|++++|+..|+++++++|+ +..+...+..+..+....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 666776666666554443
No 238
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=3e-13 Score=121.35 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=95.0
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW----------ERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
.+.++|++|++.|+++++++|+++++|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred hc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 561 LE-----------KWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 561 ~g-----------~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
+| ++++|+++|++|++++|++......+..+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 85 89999999999999999999888877665433
No 239
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=99.44 E-value=6.5e-14 Score=122.73 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=82.9
Q ss_pred hHH-hhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQF-RAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~-~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.| ..++...++++++||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|..+.+
T Consensus 11 ~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~ 90 (122)
T 3aps_A 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS 90 (122)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGGTE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCccce
Confidence 555 4466677899999999999999999999999999987 69999999999999999999999999999977766777
Q ss_pred EcCC-----CHHHHHHHHhhh
Q 005108 697 IVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-----~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|+++
T Consensus 91 ~~g~~~~~~~~~~l~~~l~~~ 111 (122)
T 3aps_A 91 IWEEQINSRDAKTIAALIYGK 111 (122)
T ss_dssp EEEEEECCSCHHHHHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHH
Confidence 7763 899999998874
No 240
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=2.9e-12 Score=111.48 Aligned_cols=117 Identities=26% Similarity=0.436 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+.+|+++++..|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 56789999999999999999999999999999998887766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..++..+|.++...|++++|+..|+++++++|++..++..++.++...|
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999987764
No 241
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.44 E-value=1.5e-12 Score=133.11 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=136.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSP-----QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
...+..+...+++++|+..+++++...+.... .++..++.++...+++++|+.+|+++++..+....
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~-------- 150 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------- 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc--------
Confidence 34456678899999999999999987664332 23445888999999999999999999987655421
Q ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID---PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
......++..+|.+|..+|++++|+.+|+++++.. +.+.... +..+.++|.+|...|+|++|+.+++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11235679999999999999999999999999532 1222211 112335699999999999999999999
Q ss_pred hccCCCC------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Q 005108 507 LRFDPSN------SVLYCNRAACWFKLG-QWERSVEDSNQALLI 543 (714)
Q Consensus 507 l~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 543 (714)
+++.+.. ..+++++|.+|.++| ++++|+++|++++.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9875433 789999999999999 579999999999875
No 242
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.44 E-value=1.5e-13 Score=132.94 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=87.9
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 3456777766778999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.+.|.++|+++
T Consensus 183 ~~~G~~~~~~l~~~i~~~ 200 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQH 200 (210)
T ss_dssp ECCSCCCHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHh
Confidence 99998 999999999874
No 243
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-14 Score=129.21 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=80.9
Q ss_pred hhHHhhhccCCC--ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCcc------ccceEEE
Q 005108 618 LEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVR------IVPTFKI 687 (714)
Q Consensus 618 ~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~------~~Pt~~~ 687 (714)
.+.|...+.... +++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|. ++||+++
T Consensus 14 ~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~ 93 (137)
T 2dj0_A 14 DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLIL 93 (137)
T ss_dssp TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEE
T ss_pred HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEE
Confidence 356666564433 88999999999999999999999999985 6999999999999999999999 9999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|++|+++.++.|. +.+.|.++|.+
T Consensus 94 ~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 94 FQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp ESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred EECCEEEEEecCcCchHHHHHHHhc
Confidence 9999999999998 76666555443
No 244
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=2.1e-12 Score=111.25 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|..+...|++++|+..|++++..+|.+..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 66789999999999999999999999999999999888766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998887753
No 245
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=5.1e-13 Score=116.77 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
.++.+|..+...|++++|+..|+++++.+|++..+|..+ |.++...|++++|+..|+++++++|++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL------------GLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 478899999999999999999999999999999999877 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998753
No 246
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=2.1e-12 Score=113.47 Aligned_cols=115 Identities=26% Similarity=0.378 Sum_probs=107.1
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-------TKALLRRA 555 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la 555 (714)
+..+|..+...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|++++++.|++ ..+++.+|
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999998877 89999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
.++..+|++++|+++|++++++.| ++.+...+..+...+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 688888888888777654
No 247
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=99.44 E-value=4.2e-14 Score=123.14 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=78.6
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc------CcchhhhCCccccceEEEEeC
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE------SPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~------~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.+...+...+.++++||++||++|+.+.|.++++..++. ..+..+|++. ..++++.|+|.++||+++|++
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 96 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITD 96 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEET
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEEC
Confidence 445666667677899999999999999999999999998875 3344454443 457889999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+.+.++.|. +.+.|+++|++
T Consensus 97 G~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 97 GQINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp TEEEEECCTTCCHHHHHHHHTC
T ss_pred CEEEEEecCCCCHHHHHHHhhC
Confidence 9999999999 99999999864
No 248
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=99.43 E-value=3.6e-13 Score=109.42 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
+.++.||++||++|+.+.|.++++..+++ ++.|+.+|+++++++++.|+|.++||+++ ||+. ++.|. +.++|++
T Consensus 4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 79 (85)
T 1fo5_A 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALVE 79 (85)
T ss_dssp EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHHH
T ss_pred eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHHH
Confidence 67899999999999999999999999998 69999999999999999999999999988 9987 78898 9999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
+|+++
T Consensus 80 ~l~~~ 84 (85)
T 1fo5_A 80 AIKKR 84 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 249
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=99.42 E-value=3.2e-13 Score=109.80 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=73.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
+.++.||++||++|+.+.|.++++..+++ ++.|+.+|+++++++++.|+|.++||+++ ||+. ++.|. +.++|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 46899999999999999999999999987 69999999999999999999999999988 9997 78888 9999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
+|+++
T Consensus 79 ~l~~~ 83 (85)
T 1nho_A 79 AINDE 83 (85)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 250
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.42 E-value=7.2e-14 Score=124.66 Aligned_cols=98 Identities=11% Similarity=0.233 Sum_probs=85.2
Q ss_pred ehhhhHHhhhccC--CCceEEEeecCCCccccccchHH---HHHHhhCCCcEEEEEec----ccCcchhhhCCccccceE
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYV---ETLCGRYPSINFLKVDI----DESPGVAHAENVRIVPTF 685 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~~~~~~vd~----d~~~~l~~~~~v~~~Pt~ 685 (714)
+.+.+.+...+.. .++++|+||++||++|+.+.|.+ .++...++++.|+.||+ +...++++.|+|.++||+
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~ 95 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI 95 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence 4445555555532 67899999999999999999998 89999998999999999 567789999999999999
Q ss_pred EEE-eCCeEE--EEEcCC-CHHHHHHHHhhh
Q 005108 686 KIY-KNGSRM--KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~-~~G~~~--~~~~g~-~~~~l~~~~~~~ 712 (714)
++| ++|+++ .++.|. +.++|++.|+++
T Consensus 96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 999 999998 789999 999999999875
No 251
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-12 Score=115.26 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...++.+|..+...|++++|+.+|+++++.+|++ ..++..+ |.++...|++++|+.+|+++++.+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhC
Confidence 7789999999999999999999999999999987 5555544 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998888877543
No 252
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.3e-12 Score=137.96 Aligned_cols=118 Identities=30% Similarity=0.505 Sum_probs=110.7
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhc----------------cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLR----------------FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+|..+++.|+|++|+..|+++++ .+|.+..+|+++|.+|.++|++++|+++|+++++++|++
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 3459999999999999999999998 778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
..+++.+|.+|..+|++++|+.+|+++++++|++..++..+..++..+++.++.
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765543
No 253
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=7.7e-14 Score=152.72 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.++...|++++|+++|+++++++|++..++..+ |.++.++|++++|+++|+++++++|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44567778888999999999999999999999999988866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhccHHHHHHHHH-----------HHHHhCCC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS--NSKLEKWADAVRDFE-----------VLRRELPD 580 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~~~p~ 580 (714)
+.+++++|.+|..+|++++|++.|+++++++|++..++..++.+ +.++|++++|++.++ ++++++|+
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999988 899999999999999 77777765
Q ss_pred C
Q 005108 581 D 581 (714)
Q Consensus 581 ~ 581 (714)
.
T Consensus 154 ~ 154 (477)
T 1wao_1 154 Y 154 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 254
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=99.40 E-value=2.6e-13 Score=124.67 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=79.8
Q ss_pred hhhHHhhhccC--CCceEEEeec-------CCCccccccchHHHHHHhhCC------CcEEEEEecccCcchhhhCCccc
Q 005108 617 SLEQFRAAVSL--PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP------SINFLKVDIDESPGVAHAENVRI 681 (714)
Q Consensus 617 ~~e~~~~~i~~--~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~------~~~~~~vd~d~~~~l~~~~~v~~ 681 (714)
+.+.|++.+.. +..++|+||| .||++|+++.|.+++++..+. .+.|++||+|++++++++|+|++
T Consensus 24 t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~s 103 (178)
T 3ga4_A 24 TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN 103 (178)
T ss_dssp CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCS
T ss_pred CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCC
Confidence 34677777643 4479999999 499999999999999998874 48999999999999999999999
Q ss_pred cceEEEEeCCeEE------------EEE----c-CCCHHHHHHHHhhh
Q 005108 682 VPTFKIYKNGSRM------------KEI----V-CPSRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~~~G~~~------------~~~----~-g~~~~~l~~~~~~~ 712 (714)
+||+++|++|... .++ . |.+.+.|.+||.+.
T Consensus 104 iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 104 VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 9999999998632 233 2 45999999999763
No 255
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.40 E-value=4.5e-10 Score=123.02 Aligned_cols=318 Identities=10% Similarity=-0.021 Sum_probs=219.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---CCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECEEAVRL---DPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~a~~~ 315 (714)
+.+...+..+...+-.|+++.+..+|++++...| +...|........+.+. .+.....|+.++.. ++.....|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3566777777778878999999999999999888 78888888877777663 45677788888864 6778889988
Q ss_pred HHHHHH----HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH---HH----HhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 316 LGSLLV----RLGQVENARRHLCLSGQQADPTEVHRLQVVEKH---LS----KCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 316 la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~---~~----~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
.+..+. ..++.+.+...|++++..+.............+ .+ ..........+..|...|+.+...-+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 887754 356788999999999984332221111111110 00 0111122344555666666665543333
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 385 SPQLSMCRVEALLKL--HQ-----LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 385 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
....|......-... +- .+.....|++++...|.. ..+|+..+..+...|+.++|...|
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--------------~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA--------------EEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444554433332221 11 345678999999999987 788999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHH----------------------------HHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKL----------------------------VARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~----------------------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
++++.. |.+...|..+..+.. ...+...+..+.+.+..+.|...|+++ +.
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred HHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 999999 998877765533200 011223344444567788888899888 43
Q ss_pred CCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 510 DPSNSVLYCNRAACWFKLG-QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
.+....+|...|.+....+ +.+.|...|+.+++..|+.+..+..++......|+.+.|...|+++
T Consensus 315 ~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 315 EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3335567777777666666 5888999999999888888888777888788888888888888876
No 256
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=2.4e-13 Score=141.91 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH-----HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL-----LNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
..+..++.+|..++..|++++|+..|++++.+.|++...... .........+.++|.+|.+.|+|++|+.+|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999876520000 000000112334577777777777777777777
Q ss_pred hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN-SKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 507 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 7777777777777777777777777777777777777777777777777773 4455666777777777777776543
No 257
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=6.8e-13 Score=115.19 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred hCcCHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 492 KSERFTEACQAYGEGLRF---DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 492 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
..|++++|+.+|++++++ +|++..+++++|.+|..+|++++|+..|+++++++|++..+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
..|+++++..|+++.+......+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999998776544443
No 258
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=1.3e-12 Score=124.98 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=122.9
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC---CHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR---NVEVAV 472 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 472 (714)
++..|++++|++.++.+.. +|.. ...++..+|.++...|++++|+.++++++.+... .....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 66 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT-------------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH- 66 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-
T ss_pred ccccccHHHHHHHHHHhcC-ChHH-------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-
Confidence 3567888999884444333 3322 3778999999999999999999999999974321 11111
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---DPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+..+|.++...|++++|+.+|++++++ .++ ...++.++|.++..+|++++|+.++++++++.+
T Consensus 67 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 67 --------RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12234599999999999999999999987 442 356789999999999999999999999997532
Q ss_pred --CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 546 --NY----TKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 546 --~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.+ ..++..+|.++..+|++++|+++|++++++..
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22 24568999999999999999999999998753
No 259
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=1.2e-12 Score=111.57 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+|++...+..+ |.++...|++++|+.+|+++++.+|.+..+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46666666554 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCC
Q 005108 544 QPN--YTKALLRRAASNSKL-EKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 544 ~p~--~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~ 581 (714)
+|+ +..+++.+|.++..+ |++++|+++++++++..|.+
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 999999999999999 99999999999999999875
No 260
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=99.39 E-value=2.9e-13 Score=118.70 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=87.8
Q ss_pred eeeehhhhHHhhhccC--CCceEEEeecC-------CCccccccchHHHHHHhhCC-CcEEEEEec-------ccCcchh
Q 005108 612 VEEVSSLEQFRAAVSL--PGVSVVHFKSA-------SNLHCKQISPYVETLCGRYP-SINFLKVDI-------DESPGVA 674 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~--~~~~vv~f~a~-------~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~-------d~~~~l~ 674 (714)
...+.+.+.|...+.. .++++++||++ ||++|+.+.|.++++..+++ ++.|+.||+ +..++++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3456667788877755 77999999999 99999999999999999996 699999999 7899999
Q ss_pred hhCCccccceEEEEeCCeEEEEEcCCCHHHHHHHHhh
Q 005108 675 HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 675 ~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
+.|+|.++||+++|++|.++....|.+.+.|+++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 9999999999999999888877777788999998864
No 261
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.39 E-value=2.1e-13 Score=121.50 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=80.9
Q ss_pred cCCCceEEEeecCCCccccccchHHH--HHHhhC-CCcEEEEEec---ccCcchhhhCCc---cccceEEEE-eCCeEEE
Q 005108 626 SLPGVSVVHFKSASNLHCKQISPYVE--TLCGRY-PSINFLKVDI---DESPGVAHAENV---RIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~p~l~--~l~~~~-~~~~~~~vd~---d~~~~l~~~~~v---~~~Pt~~~~-~~G~~~~ 695 (714)
...++++|+||++||++|+.+.|.++ ++...+ .++.|+.||+ ++..++++.|+| .++||+++| ++|+++.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 45779999999999999999999999 888887 4699999999 899999999999 999999999 9999999
Q ss_pred EEcC-------C-CHHHHHHHHhhhc
Q 005108 696 EIVC-------P-SRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g-------~-~~~~l~~~~~~~~ 713 (714)
+..| . +.++++++|+++.
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHhc
Confidence 9999 5 8999999998863
No 262
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.38 E-value=4e-12 Score=134.19 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc----------------cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQ----------------IDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
..+..+..+|..++..|++++|+..|+++++ .+|.+..++. ++|.+|+++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~------------nla~~~~~~g~ 288 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVL------------NIGACKLKMSD 288 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHH------------HHHHHHHhccC
Confidence 3466789999999999999999999999998 4444444444 45999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
+++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+++|+++++++|++..++..++.++..+++++++.+.
T Consensus 289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888654
No 263
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=1.1e-11 Score=109.02 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
.++.+|.++...|++++|+..|+++++.+|++. .+++.+ |.++...|++++|+.+|+++++.+|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWL------------GESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 478899999999999999999999999999987 566655 99999999999999999999999999
Q ss_pred C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 513 N---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 513 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
+ +.+++.+|.++..+|++++|+..|+++++..|++..+...+..+....+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9 8999999999999999999999999999999999877766655554433
No 264
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.9e-11 Score=130.56 Aligned_cols=211 Identities=8% Similarity=-0.001 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----------------AFRSNRAAALTGLGRIGEAVKECEEAVR 304 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (714)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|..+|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788899999999999999999999887652 3466677777777777777777776665
Q ss_pred cCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Q 005108 305 LDPNYW------RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAI 378 (714)
Q Consensus 305 ~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al 378 (714)
..+... .+...++.++...|++++|+.++ ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------------------------------------~~~~ 122 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVC-----------------------------------------EKSI 122 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHH-----------------------------------------HHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHH-----------------------------------------HHHH
Confidence 433321 12333444444445555555444 4444
Q ss_pred HcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHH
Q 005108 379 AAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453 (714)
Q Consensus 379 ~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 453 (714)
.... .....++..+|.+|...|++++|+.++++++....... +......++..++.+|...|++++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 123 EFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD--------DKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--------CSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHhCcHHHH
Confidence 3311 11245667799999999999999999998875433220 1113467899999999999999999
Q ss_pred HHHHHHHhccCC---CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 454 VTAAEKAGQIDP---RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 454 ~~~~~~al~~~p---~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
..++++++.+.+ ........ .+...|..+...++|++|..+|.++++.
T Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 195 KASLTAARTAANSIYCPTQTVAE--------LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHH--------HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999986543 22222111 1224589999999999999999999874
No 265
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.35 E-value=2e-12 Score=116.03 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=84.4
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC----------HHHHHHHHHHhhccCCCCH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER----------FTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~ 514 (714)
.+.++|++|++.++++++++|++.++|..+ |.++...++ +++|+..|+++|+++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~------------G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRW------------GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 456789999999999999999999999877 777877766 4699999999999999999
Q ss_pred HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCH
Q 005108 515 VLYCNRAACWFKLG-----------QWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 515 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 548 (714)
.+|+++|.+|..+| ++++|+++|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999975
No 266
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.34 E-value=1.7e-12 Score=127.13 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=83.8
Q ss_pred hHHhhhccCCCce-EEEeecCCCccccccchHHHHHHhhCC-----CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAVSLPGVS-VVHFKSASNLHCKQISPYVETLCGRYP-----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~~~~~-vv~f~a~~c~~C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+..+....+.+ ++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 203 (226)
T 1a8l_A 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE 203 (226)
T ss_dssp HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTE
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCc
Confidence 3444444455566 999999999999999999999999886 7999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|+++
T Consensus 204 ~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 204 DRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp EEEEEESCCCHHHHHHHHHHH
T ss_pred eeEEEcCCCCHHHHHHHHHHh
Confidence 99999999 999999999875
No 267
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=5.3e-13 Score=118.84 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred hHHhhhcc-CCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVS-LPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~-~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.|...+. ...+++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+.+++.|+|.++||+++|++|..+
T Consensus 15 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp TTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT
T ss_pred CCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc
Confidence 55666554 36799999999999999999999999999885 599999999999999999999999999999888755
Q ss_pred E--EEc-CC-CHHHHHHHHhhh
Q 005108 695 K--EIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~--~~~-g~-~~~~l~~~~~~~ 712 (714)
. ++. |. +.+.|.++|+++
T Consensus 95 ~~~~~~gg~~~~~~l~~~l~~~ 116 (133)
T 2dj3_A 95 NPIKFEGGNRDLEHLSKFIDEH 116 (133)
T ss_dssp SCEECCSSCCSTTHHHHHHHHH
T ss_pred cceEecCCCcCHHHHHHHHHHh
Confidence 4 455 64 899999999875
No 268
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=9.7e-12 Score=109.18 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.++...|++++|+.+|++++..+|.+..++..+ |.++...|++++|+.+|+++++..|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQ------------AAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH------------HHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 56789999999999999999999999999999998888766 999999999999999999999998877
Q ss_pred -------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 514 -------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 514 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+++.+|.++...|++++|+++|++++++.| +...+..++.++..+++
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 58888888888766554
No 269
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=99.34 E-value=1.1e-12 Score=114.63 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=79.6
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC------CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP------SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~------~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.|...+ ...++++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+ +++ +|.++||+++|++
T Consensus 14 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~ 90 (121)
T 2djj_A 14 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPA 90 (121)
T ss_dssp TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECS
T ss_pred ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeC
Confidence 35666664 567799999999999999999999999999886 4899999999876 665 9999999999988
Q ss_pred CeE--EEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSR--MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~--~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.. +.++.|. +.+.|.++|+++
T Consensus 91 ~~~~~~~~~~G~~~~~~l~~~i~~~ 115 (121)
T 2djj_A 91 GAKGQPVTYSGSRTVEDLIKFIAEN 115 (121)
T ss_dssp SCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred cCCCCceEecCCCCHHHHHHHHHhc
Confidence 755 7788898 999999999875
No 270
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=4.8e-12 Score=107.82 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN--YWRAHQR 315 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~ 315 (714)
+|+++..++.+|..++..|++++|+.+|+++++.+|.+..+++.+|.++..+|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677778889999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHhhcC
Q 005108 316 LGSLLVRL-GQVENARRHLCLSGQ 338 (714)
Q Consensus 316 la~~~~~~-g~~~~A~~~~~~al~ 338 (714)
+|.++..+ |++++|+++|++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999 999999999999886
No 271
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=6.8e-12 Score=119.93 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=119.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Q 005108 252 LYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVR------LDPNYWRAHQRLGSLLVRLG 324 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~g 324 (714)
++..|++++|++.++.... +| ....++..+|.++...|++++|+..|+++++ ..+....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996655544 44 5688899999999999999999999999988 34445778888888888888
Q ss_pred CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005108 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED 404 (714)
Q Consensus 325 ~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (714)
++++|+.+|++++.. +...++ ++......+..+|.++...|++++
T Consensus 81 ~~~~A~~~~~~al~~---------------------~~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 81 NWDAARRCFLEEREL---------------------LASLPE--------------DPLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp CHHHHHHHHHHHHHH---------------------HHHSCC--------------CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHH---------------------HHHcCc--------------cHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888888776420 000010 000113345568888888888888
Q ss_pred HHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 405 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
|+.++++++++.+.. ........++..+|.++...|++++|+.++++++++.
T Consensus 126 A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 126 ARQEYEKSLVYAQQA--------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888888887653322 1112235667899999999999999999999998753
No 272
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=99.33 E-value=2.1e-12 Score=114.75 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=82.4
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccc--cceEEEEeC--Ce
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRI--VPTFKIYKN--GS 692 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~--~Pt~~~~~~--G~ 692 (714)
.+.|...+..+.+++++||++ |++|+++.|.+++++.+|.+ +.|++||+|+.+.+++.|||++ +||++++++ |+
T Consensus 13 ~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 13 PETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp HHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred hHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcCc
Confidence 356666666677899999999 89999999999999999964 9999999999999999999999 999999987 77
Q ss_pred EEEEEc--CC-CHHHHHHHHhhh
Q 005108 693 RMKEIV--CP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~--g~-~~~~l~~~~~~~ 712 (714)
. .++. |. +.+.|+++|+++
T Consensus 92 ~-~~~~~~g~~~~~~l~~fi~~~ 113 (133)
T 2djk_A 92 K-FPFDQEKEITFEAIKAFVDDF 113 (133)
T ss_dssp B-CCCCSSSCCCHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHHHHHH
Confidence 6 5766 88 999999999875
No 273
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=99.01 E-value=1.2e-13 Score=117.39 Aligned_cols=89 Identities=25% Similarity=0.487 Sum_probs=81.4
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
++...+++++.||++||+.|+.+.|.++++..+++ ++.|+.+|+++.+++++.|+|.++||+++|++|+.+.++.|. +
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 94 (106)
T 2yj7_A 15 VLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQP 94 (106)
Confidence 33556789999999999999999999999999987 599999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+.|.++|+++
T Consensus 95 ~~~l~~~l~~~ 105 (106)
T 2yj7_A 95 KEALKERIDKH 105 (106)
Confidence 89999988764
No 274
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=99.32 E-value=7.6e-13 Score=121.79 Aligned_cols=82 Identities=6% Similarity=-0.025 Sum_probs=69.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCC---ccccceEEEEeC-CeEEEEEcCCCHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN---VRIVPTFKIYKN-GSRMKEIVCPSRD 703 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~---v~~~Pt~~~~~~-G~~~~~~~g~~~~ 703 (714)
.++++++||++||++|+.+.|.|+++...++++.|+.||+|++++++..|. |+++||+++|++ |+++.++.+.. +
T Consensus 54 ~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g~~p-~ 132 (167)
T 1z6n_A 54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP-Q 132 (167)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESSC-H
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEcCCC-H
Confidence 458899999999999999999999999999999999999999999999997 999999999977 58887774434 3
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
.++..|.
T Consensus 133 ~~~~~i~ 139 (167)
T 1z6n_A 133 AVLDGGP 139 (167)
T ss_dssp HHHHHCH
T ss_pred HHHHhHH
Confidence 3444443
No 275
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=9.3e-12 Score=113.66 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+.++..+|.++...|++++|+.++++++++.+....... ....+..+|.++...|++++|+.+|++++++.+
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999987543221100 112233569999999999999999999998754
Q ss_pred CC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 512 SN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQP------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 512 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.. ..++.++|.++...|++++|++++++++++.+ ....++..+|.++..+|++++|++++++++++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 67899999999999999999999999998632 2246789999999999999999999999998754
Q ss_pred C
Q 005108 580 D 580 (714)
Q Consensus 580 ~ 580 (714)
.
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 4
No 276
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.31 E-value=2.9e-12 Score=133.77 Aligned_cols=113 Identities=29% Similarity=0.418 Sum_probs=89.3
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNS-----------------VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+.+|..++..|+|++|+.+|++++++.|++. .+|+++|.+|.++|+|++|+.+|+++++++|+
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3459999999999999999999999999876 48999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
+..+|+++|.+|..+|++++|+.+|+++++++|++..++..|..+....+
T Consensus 263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887755443
No 277
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.29 E-value=2.9e-12 Score=126.91 Aligned_cols=95 Identities=23% Similarity=0.301 Sum_probs=85.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+...++++|+||++||++|+.+.|.++++..++.+ +.|+.||+++..++++.|+|.++||+++|++|+
T Consensus 21 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 100 (241)
T 3idv_A 21 NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100 (241)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCC
Confidence 3467777887788999999999999999999999999987743 899999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ ++.|. +.+.|.++|+++
T Consensus 101 ~~-~~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 101 AV-DYEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EE-ECCSCSCHHHHHHHHHHH
T ss_pred cc-cccCcccHHHHHHHHhhc
Confidence 88 57777 999999999874
No 278
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.29 E-value=2.1e-12 Score=107.95 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=69.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
..++.||++||++|+++.|.|+++..++. +.|.+||++++++++..|+++ +|++++++||+.+. .|+ +.++|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~~ 105 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGAY 105 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence 56899999999999999999999998875 899999999999999999997 99999999999873 465 99999988
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|.
T Consensus 106 L~ 107 (107)
T 2fgx_A 106 LS 107 (107)
T ss_dssp HC
T ss_pred hC
Confidence 73
No 279
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.28 E-value=3.2e-12 Score=110.88 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=83.3
Q ss_pred HhCcHHHHHHHHHHHhcc---CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 446 ALGRFENAVTAAEKAGQI---DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
.+|++++|+.+|++++++ +|++..++..+ |.++...|++++|+.+|+++++++|+++.+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGL------------GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999999999 47666666655 999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
++..+|++++|+..|+++++..|+++.+..
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999987653
No 280
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=99.28 E-value=1.9e-12 Score=104.63 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
.++.||++||++|+++.|.|+++..++ |.+||++++++++.+|+++ +||+++ +||+.+. |+ +.++|+++|
T Consensus 2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 2 ALTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 378999999999999999999887654 7899999999999999998 999998 9999985 65 999999999
Q ss_pred hhh
Q 005108 710 RHY 712 (714)
Q Consensus 710 ~~~ 712 (714)
+++
T Consensus 73 ~~~ 75 (87)
T 1ttz_A 73 DAA 75 (87)
T ss_dssp HTC
T ss_pred HHH
Confidence 864
No 281
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.4e-11 Score=130.11 Aligned_cols=204 Identities=9% Similarity=0.018 Sum_probs=161.2
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCC
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFS----------------PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 418 (714)
+..+..+...|+|++|++.|.++++..+... ...+..+|.+|...|++++|++++.++++..+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999877532 234667999999999999999999999876554
Q ss_pred CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC------HHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN------VEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
.. .......+...++.++...|++++|+.++++++...+.. ..++. .+|.++..
T Consensus 88 ~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------~la~~~~~ 147 (434)
T 4b4t_Q 88 FA--------KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI------------KLATLHYQ 147 (434)
T ss_dssp SC--------HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH------------HHHHHHHH
T ss_pred cc--------chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH------------HHHHHHHH
Confidence 31 111223456778888888999999999999998653221 22222 45999999
Q ss_pred CcCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHH
Q 005108 493 SERFTEACQAYGEGLRF------DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ---PNY----TKALLRRAASNS 559 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~ 559 (714)
.|+|++|+.++++++.. .+....++..++.+|..+|++++|...|++++.+. ++. ...+..+|.++.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999998865 23346899999999999999999999999998763 222 356778889999
Q ss_pred HhccHHHHHHHHHHHHHhC
Q 005108 560 KLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~ 578 (714)
..++|++|..+|.++++..
T Consensus 228 ~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp SSSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 282
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1e-11 Score=126.40 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc--cCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID--ESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+ ....+++|+||++||++|+.+.|.++++..++++ +.++.||+| +..++++.|+|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 346777777 4467899999999999999999999999999976 889999998 688999999999999999999997
Q ss_pred -----------------EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 -----------------RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 -----------------~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|.+.
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHh
Confidence 36677888 999999998764
No 283
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.90 E-value=5.6e-13 Score=118.16 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHH---HHHHhhCCC-cEEEEEec--ccCcchhhhCCccccceEEEE--eCC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYPS-INFLKVDI--DESPGVAHAENVRIVPTFKIY--KNG 691 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~-~~~~~vd~--d~~~~l~~~~~v~~~Pt~~~~--~~G 691 (714)
.+.......++++|+||++||++|+.+.|.+ +++...+.+ +.|+.||+ ++..++++.|+|.++||+++| ++|
T Consensus 11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G 90 (130)
T 2lst_A 11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAG 90 (130)
Confidence 3444445567899999999999999999999 888888765 88999999 467889999999999999999 789
Q ss_pred eE--EEEEcCC-CHHHHHHHHhhh
Q 005108 692 SR--MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~--~~~~~g~-~~~~l~~~~~~~ 712 (714)
+. +.++.|. +.+.|.++|+++
T Consensus 91 ~~~~~~~~~G~~~~~~l~~~l~~~ 114 (130)
T 2lst_A 91 AWEEVGRLFGSRPRAEFLKELRQV 114 (130)
Confidence 99 8999999 888999988875
No 284
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.25 E-value=8.1e-12 Score=123.62 Aligned_cols=97 Identities=25% Similarity=0.346 Sum_probs=85.7
Q ss_pred hhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 616 SSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 616 ~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.+.+.|...+....+++|+||++||++|+.+.|.+.++..++ +++.|++||+++.+++++.|+|.++||+++|++|
T Consensus 135 ~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 214 (241)
T 3idv_A 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG 214 (241)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence 344566777767789999999999999999999999998876 4499999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHhhhc
Q 005108 692 SRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+.+. +.|. +.+.|.++|.+..
T Consensus 215 ~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 215 RPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEE-CCSCCSHHHHHHHHHHHT
T ss_pred eEEE-ecCCCCHHHHHHHHHhhh
Confidence 9887 7788 9999999998753
No 285
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.25 E-value=1.5e-11 Score=134.60 Aligned_cols=110 Identities=27% Similarity=0.515 Sum_probs=104.9
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..++..|++++|+++|+++++++|++..+|+++|.+|.++|++++|+++|+++++++|++..+++++|.+|..+|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+++|+++++++|++..++..+..+...
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999888887333
No 286
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=5.9e-12 Score=111.51 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCCceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEecc--cCcchhhhCCccccceEEEE-eCCeEEEEEcC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDID--ESPGVAHAENVRIVPTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g 699 (714)
..++++|.||++||++|+.+.|.+ +.+...+. .+.++.||++ +...+++.|+|.++||+++| ++|+++.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 467899999999999999999988 66655543 5889999998 47789999999999999999 89999999999
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.+.|.++|+++
T Consensus 106 ~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 106 AEDAPELLKKVKLG 119 (130)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 9 999999999875
No 287
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.23 E-value=6e-12 Score=117.46 Aligned_cols=85 Identities=8% Similarity=0.190 Sum_probs=71.0
Q ss_pred cCCCceEEEeecCCCccccccc------hHHHHHHhhCCCcEEEEEecccCcch--------------------------
Q 005108 626 SLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYPSINFLKVDIDESPGV-------------------------- 673 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~~~~~~~vd~d~~~~l-------------------------- 673 (714)
..+++++|+||++||++|+.+. |.+.+...+ ++.|+.||+++..++
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQ 122 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHH
Confidence 4577999999999999999983 444444333 589999999987766
Q ss_pred hhhCCccccceEEEE-eCCeEEEEEcCC-C-HHHHHHHHhhh
Q 005108 674 AHAENVRIVPTFKIY-KNGSRMKEIVCP-S-RDMLEHSVRHY 712 (714)
Q Consensus 674 ~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~-~~~l~~~~~~~ 712 (714)
+..|+|.++||+++| ++|+++.++.|. + .+++.++|++.
T Consensus 123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 789999999999999 999999999999 6 88888887753
No 288
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=132.22 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=84.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-------CcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-------SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-------~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.|..++...++++|.||++||++|+.+.|.++++...+. ++.|++||+++..++++.|+|.++||+++|++|
T Consensus 13 ~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G 92 (382)
T 2r2j_A 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG 92 (382)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETT
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCC
Confidence 5666777677899999999999999999999999988762 389999999999999999999999999999999
Q ss_pred eEEEE-EcCC-CHHHHHHHHhhh
Q 005108 692 SRMKE-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~-~~g~-~~~~l~~~~~~~ 712 (714)
+.+.+ +.|. +.+.|.++|.+.
T Consensus 93 ~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 93 MMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp EEEEEECCSCCSHHHHHHHHHHH
T ss_pred cEeeeeecCcchHHHHHHHHHHh
Confidence 99884 8898 999999999874
No 289
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=99.22 E-value=2.5e-11 Score=127.22 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=84.2
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchH-------HHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPY-------VETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~-------l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
+.+.|...+...++++|+|||+||+ |+.+.|. ++++...+. ++.|++||+++.++++++|+|+++||+++
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~ 95 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYV 95 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEE
Confidence 3467888887888999999999999 9999888 888887774 59999999999999999999999999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|++|+ +.++.|. +.+.|.++|.+.
T Consensus 96 ~~~g~-~~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 96 LKGDR-TIEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp EETTE-EEEECSCCCHHHHHHHHHTT
T ss_pred EECCc-EEEecCCCCHHHHHHHHHHh
Confidence 99999 5688898 999999999874
No 290
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.22 E-value=1.5e-10 Score=99.74 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhhh
Q 005108 577 ELPD--DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 577 ~~p~--~~~~~~~L~~~~~~l~~ 597 (714)
+.|+ +......+......+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9874 45555556555555544
No 291
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=121.79 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred eeeehhhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEec--ccCcchhhhCCccccce
Q 005108 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDI--DESPGVAHAENVRIVPT 684 (714)
Q Consensus 612 ~~~i~~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~--d~~~~l~~~~~v~~~Pt 684 (714)
+..+.. +.|...+ ...++++|+||++||++|+.+.|.++++..+++ .+.|+.||+ ++..++++.|+|.++||
T Consensus 14 v~~l~~-~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt 92 (244)
T 3q6o_A 14 LTLLQA-DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92 (244)
T ss_dssp SEEECT-TTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred ceeCCh-hhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence 333444 4555544 455899999999999999999999999999986 499999999 67899999999999999
Q ss_pred EEEEeCCeEEE-----EEcCCCHHHHHHHHhhh
Q 005108 685 FKIYKNGSRMK-----EIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~~~G~~~~-----~~~g~~~~~l~~~~~~~ 712 (714)
+++|++|+.+. ++.|.+.+.|+++|.++
T Consensus 93 ~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDA 125 (244)
T ss_dssp EEEECTTCCSSSCEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHH
Confidence 99999854432 66677899999888764
No 292
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=99.21 E-value=1.5e-11 Score=134.96 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=88.0
Q ss_pred hhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+... ++++|.||++||++|+.+.|.++++...+.+ +.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 8 ~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~~ 87 (481)
T 3f8u_A 8 DDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEE 87 (481)
T ss_dssp TTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCce
Confidence 35677777666 8999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.+.
T Consensus 88 ~~~~~G~~~~~~l~~~~~~~ 107 (481)
T 3f8u_A 88 AGAYDGPRTADGIVSHLKKQ 107 (481)
T ss_dssp EEECCSCSSHHHHHHHHHHH
T ss_pred eeeecCccCHHHHHHHHHhh
Confidence 9999999 999999999875
No 293
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.9e-11 Score=104.29 Aligned_cols=96 Identities=28% Similarity=0.408 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------HHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY------WRAHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~ 314 (714)
++..++.+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh
Q 005108 315 RLGSLLVRLGQVENARRHLCLS 336 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~a 336 (714)
.+|.++..+|++++|+..|++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766554
No 294
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=99.19 E-value=1.1e-11 Score=104.98 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=61.7
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc----cCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID----ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
.+.+|+||++||++|+.+.|.++++..+++ ++.+|++ +.+++++.|+|+++||+++ +|++ +.|. +.+
T Consensus 13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~~~~ 84 (106)
T 3kp8_A 13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLE 84 (106)
T ss_dssp HHTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCCCHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCCCHH
Confidence 356899999999999999999999988775 4444433 6788999999999999877 9984 7788 999
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
.|++++.
T Consensus 85 ~l~~~~~ 91 (106)
T 3kp8_A 85 ALAVASG 91 (106)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9998874
No 295
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.18 E-value=4.3e-11 Score=106.62 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=78.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCccccce
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVRIVPT 684 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~~~Pt 684 (714)
..+++++.||++||++|+...|.+.++..+++++.|+.|+++. ..++++.|+|.++|+
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 102 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence 3568999999999999999999999999999999999999987 678999999999999
Q ss_pred EEEE-eCCeEEEEEc---CC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++ ++. |. +.++|++.|+++
T Consensus 103 ~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 103 FVFYRADGTST-FVNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp EEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred EEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence 9999 899999 999 98 999999999875
No 296
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.18 E-value=3.6e-12 Score=117.71 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=78.6
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcc-hhhhCCc--cccceEEEE-eCCeE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPG-VAHAENV--RIVPTFKIY-KNGSR 693 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~-l~~~~~v--~~~Pt~~~~-~~G~~ 693 (714)
+.+.......++++|+||++||++|+.+.|.++++...+. ++.|+.||+++.++ ++..|+| ..+||+++| ++|++
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 116 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 116 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence 4555565667899999999999999999999998765543 47889999998877 8889998 669999999 89999
Q ss_pred EEEEcC-----------CCHHHHHHHHhhh
Q 005108 694 MKEIVC-----------PSRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g-----------~~~~~l~~~~~~~ 712 (714)
+.++.| .+.++|.+.|+++
T Consensus 117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 117 HPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred EEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 999998 3778888888764
No 297
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=7.3e-11 Score=107.60 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+..+|.++...|++++|+.+++++++..+.. ........++..+|.++...|++++|+.++++++++.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888888888765432 111223568899999999999999999999999976543
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
...... ....+..+|.++...|++++|+.++++++++.+. ...++..+|.++..+|++++|+++++++
T Consensus 82 ~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 LKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp TTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCcHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 211100 0112235699999999999999999999986322 2578899999999999999999999999
Q ss_pred HHhCCC
Q 005108 541 LLIQPN 546 (714)
Q Consensus 541 l~~~p~ 546 (714)
+++...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987543
No 298
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.17 E-value=2.2e-11 Score=111.15 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=74.6
Q ss_pred cCCCceEEEee-cCCCccccccchHH---HHHHhhC-CCcEEEEEecccCc-----------chhhhCCccccceEEEE-
Q 005108 626 SLPGVSVVHFK-SASNLHCKQISPYV---ETLCGRY-PSINFLKVDIDESP-----------GVAHAENVRIVPTFKIY- 688 (714)
Q Consensus 626 ~~~~~~vv~f~-a~~c~~C~~~~p~l---~~l~~~~-~~~~~~~vd~d~~~-----------~l~~~~~v~~~Pt~~~~- 688 (714)
...++++|+|| ++||++|+.+.|.+ .++...+ .++.++.||+++.. ++++.|+|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34678999999 99999999999999 7776655 46899999998765 88999999999999999
Q ss_pred eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
++|+++.++ |. +.+.+.++|+++
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~ 150 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSA 150 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHH
Confidence 999999999 87 588888888764
No 299
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=99.17 E-value=3.7e-11 Score=117.82 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=79.8
Q ss_pred hHHhhhccCCCce-EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVS-VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~-vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.+..++...+.+ ++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++ ||+ +.++
T Consensus 126 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~~ 202 (229)
T 2ywm_A 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAEF 202 (229)
T ss_dssp HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEEE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEEe
Confidence 4455555455555 88999999999999999999999999889999999999999999999999999988 999 7778
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.++|.++|+++
T Consensus 203 ~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 203 VGAQPENAFLGYIMAV 218 (229)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 899 999999998764
No 300
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=99.17 E-value=2.6e-11 Score=133.83 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=88.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeE-
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR- 693 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~- 693 (714)
+.+.|...+....+++|.||++||++|+.+.|.++++...+. ++.|++||+++..++++.|+|.++||+++|++|+.
T Consensus 20 ~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 99 (504)
T 2b5e_A 20 ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 99 (504)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccc
Confidence 446788888888899999999999999999999999999987 49999999999999999999999999999999997
Q ss_pred -EEEEcCC-CHHHHHHHHhhh
Q 005108 694 -MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 -~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.+.
T Consensus 100 ~~~~~~G~~~~~~l~~~l~~~ 120 (504)
T 2b5e_A 100 NSIDYEGPRTAEAIVQFMIKQ 120 (504)
T ss_dssp CEEECCSCCSHHHHHHHHHHH
T ss_pred cceeecCCCCHHHHHHHHHHh
Confidence 8889998 999999999864
No 301
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.16 E-value=5.5e-12 Score=113.58 Aligned_cols=81 Identities=9% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHh--hCCCcEEEEEecc-cCcchhhhCCccccceEEEEe-CCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCG--RYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYK-NGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~--~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~-~G~~~~ 695 (714)
.+..+...+++++|+||++||++|+.+.|.+.+... .+.+..|+.||+| +..+++..|+|.++||+++|+ +|+++.
T Consensus 36 al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~ 115 (151)
T 3ph9_A 36 GLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRA 115 (151)
T ss_dssp HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCT
T ss_pred HHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEE
Confidence 445555667899999999999999999998876421 2223457777775 456788999999999999997 999999
Q ss_pred EEcCC
Q 005108 696 EIVCP 700 (714)
Q Consensus 696 ~~~g~ 700 (714)
+++|.
T Consensus 116 ~~~G~ 120 (151)
T 3ph9_A 116 DIAGR 120 (151)
T ss_dssp TCCCS
T ss_pred EEeCC
Confidence 99996
No 302
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=99.15 E-value=4.1e-11 Score=95.07 Aligned_cols=72 Identities=8% Similarity=0.177 Sum_probs=63.7
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEH 707 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~ 707 (714)
..|+||++||++|+.+.|.++++..++. ++.++.|| .++++++|+|.++||+++ ||+.+.+ |. +.++|++
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~ 74 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK 74 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence 3589999999999999999999999887 58888888 778999999999999988 9998887 65 7888887
Q ss_pred HH
Q 005108 708 SV 709 (714)
Q Consensus 708 ~~ 709 (714)
+|
T Consensus 75 ~l 76 (77)
T 1ilo_A 75 IL 76 (77)
T ss_dssp HC
T ss_pred Hh
Confidence 65
No 303
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=2e-11 Score=104.07 Aligned_cols=91 Identities=24% Similarity=0.388 Sum_probs=77.3
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAA 556 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~ 556 (714)
+..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..+++.+|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 34558888899999999999999999999888899999999999999999999999999988888 788888888
Q ss_pred HHHHhccHHHHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEV 573 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~ 573 (714)
++..+|++++|+..|++
T Consensus 87 ~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 87 AQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHCCCCCSSSSSS
T ss_pred HHHHHHhHhhhHhHHHH
Confidence 88888888777766554
No 304
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.14 E-value=6.1e-11 Score=116.03 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=80.2
Q ss_pred hhHHhhhc-c--CCCceEEEeecC-CCccccccchHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEEeCC
Q 005108 618 LEQFRAAV-S--LPGVSVVHFKSA-SNLHCKQISPYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 618 ~e~~~~~i-~--~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.++++..+ . ...++++.||++ ||++|+.+.|.++++....+.+.|++||+++ .+++++.|+|.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34454444 1 235778999999 9999999999999999877789999999999 9999999999999999999999
Q ss_pred eEE-EEEcCC-CHHHHHHHHhhh
Q 005108 692 SRM-KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~-~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+ .++.|. +.+.+..++..+
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHH
Confidence 876 788888 778888877653
No 305
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.14 E-value=7.4e-11 Score=106.33 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
..+++++.||++||++|+.+.|.+.++..+++ ++.|+.|+++. ...+++.|+|
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 45689999999999999999999999999997 69999999864 6689999999
Q ss_pred cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
.++|+++++ ++|+++.++.|. +.++|++.|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 999999999999 9999998874
No 306
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=99.14 E-value=3.8e-11 Score=126.34 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=81.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccc------hHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+.++|...+....+++|+|||+||++|.... |.++.+...+. ++.|++||+++.+++|++|+|+++||+++|
T Consensus 19 t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f 98 (367)
T 3us3_A 19 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVF 98 (367)
T ss_dssp CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEE
Confidence 4467888887788999999999999974333 57778777664 499999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+++ ++.|. +.+.|.++|.+.
T Consensus 99 ~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 99 KEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp ETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred ECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 999876 77888 999999999874
No 307
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=99.13 E-value=7.2e-11 Score=114.95 Aligned_cols=91 Identities=10% Similarity=0.164 Sum_probs=80.5
Q ss_pred hhHHhhhccCCCceEEEeec--CCCccccccchHHHHHHhhC---CCcEEEEEeccc-----CcchhhhCCcc--ccceE
Q 005108 618 LEQFRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRY---PSINFLKVDIDE-----SPGVAHAENVR--IVPTF 685 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~-----~~~l~~~~~v~--~~Pt~ 685 (714)
..+|..++....+++|+||+ +||+ +.|.++++...+ +++.|++||+++ ++++++.|+|. ++|||
T Consensus 12 ~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl 87 (240)
T 2qc7_A 12 TVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVF 87 (240)
T ss_dssp TTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEE
T ss_pred HHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEE
Confidence 36777777777899999999 9999 999999999887 469999999665 88999999999 99999
Q ss_pred EEEeCCe--EEEEEcCC-CHHHHHHHHhhh
Q 005108 686 KIYKNGS--RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~--~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|++|+ .+.++.|. +.+.|.++|.++
T Consensus 88 ~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 88 YLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 9999998 46788898 999999999875
No 308
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.13 E-value=9.5e-11 Score=106.05 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec---------------------------ccCcchhhhCC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI---------------------------DESPGVAHAEN 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~~ 678 (714)
..+++++.||++||+.|+...|.+.++..++++ +.|+.|++ +....+++.|+
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 456899999999999999999999999999876 99999985 44567899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.+..|. +.++|++.|+++
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 143 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 999999999998 889999998875
No 309
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.12 E-value=5.4e-10 Score=91.26 Aligned_cols=85 Identities=35% Similarity=0.519 Sum_probs=81.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.++..++.+|..++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 005108 320 LVRLG 324 (714)
Q Consensus 320 ~~~~g 324 (714)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88764
No 310
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.12 E-value=1.3e-10 Score=103.31 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
..+++++.||++||++|+...|.+.++..+++++.|+.|++++ ...+++.|+|.++|
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 103 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence 3468999999999999999999999999999999999999854 56789999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++ ++.|. +.++|++.|+++
T Consensus 104 ~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 104 AYAFVDPHGNVD-VVRGRMSQDELTRRVTAL 133 (136)
T ss_dssp EEEEECTTCCEE-EEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCEE-EEecCCCHHHHHHHHHHH
Confidence 99999 799999 99998 999999999875
No 311
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=99.12 E-value=9.1e-11 Score=114.56 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=79.9
Q ss_pred hhhHHhhhccCCCceEEEee--cCCCccccccchHHHHHHhhC----CCcEEEEEeccc-----CcchhhhCCcc--ccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFK--SASNLHCKQISPYVETLCGRY----PSINFLKVDIDE-----SPGVAHAENVR--IVP 683 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~--a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~-----~~~l~~~~~v~--~~P 683 (714)
+..+|..++.....++|+|| ++||+ +.|.++++...+ +++.|++||+++ +++++..|+|+ ++|
T Consensus 22 t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 22 DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 34677777777789999999 99998 999999999887 469999999998 89999999999 999
Q ss_pred eEEEEeCCeE--EEEE--cCC-CHHHHHHHHhhh
Q 005108 684 TFKIYKNGSR--MKEI--VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~~--~~~~--~g~-~~~~l~~~~~~~ 712 (714)
||++|+ |+. +.++ .|. +.+.|..+|.++
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHh
Confidence 999999 983 5666 787 999999999875
No 312
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=99.11 E-value=1e-10 Score=115.38 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC-----CCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY-----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
..+.++.||++||++|+.+.|.++++...+ +++.+..||+++.+++++.|+|+++||+++ ||+.+ +.|. +
T Consensus 138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~ 213 (243)
T 2hls_A 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPY 213 (243)
T ss_dssp SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCC
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCC
Confidence 346789999999999999999999999888 679999999999999999999999999988 99865 7788 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.++|.++|.++
T Consensus 214 ~~~l~~~l~~~ 224 (243)
T 2hls_A 214 EEDFLDYVKSA 224 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 313
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=3.5e-10 Score=97.37 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 530 (714)
++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++++|++..+|+.+|.+|..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTL------------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 368899999999999999988876 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhc
Q 005108 531 ERSVEDSNQALLIQPN--YTKALLRRAASNSKLE 562 (714)
Q Consensus 531 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 562 (714)
++|+..|++++++.|. +......+...+..++
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999998774 3444445554444444
No 314
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.09 E-value=1.4e-10 Score=105.47 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=76.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------~~~l~~~~~v~~~P 683 (714)
.+++++.||++||++|+...|.+.++..+++ ++.|+.|++++ ...+++.|+|.++|
T Consensus 26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 105 (151)
T 2f9s_A 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 105 (151)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence 4689999999999999999999999999886 49999999876 34789999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 106 ~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l 136 (151)
T 2f9s_A 106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136 (151)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 98888 999999999999 999999999875
No 315
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=1.6e-10 Score=105.13 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc------------------------CcchhhhCC--
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE------------------------SPGVAHAEN-- 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~------------------------~~~l~~~~~-- 678 (714)
.+++++|+||++||++|+...|.+.++..++. ++.++.|++|. ...+++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 35689999999999999999999999999984 59999999873 344678899
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 138 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLA 138 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999988777 999999999999 999999999875
No 316
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.08 E-value=1.3e-10 Score=106.02 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=77.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------------------------ccCcchhhhCCccc
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------DESPGVAHAENVRI 681 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------d~~~~l~~~~~v~~ 681 (714)
+++++.||++||++|+...|.+.++..++ ++.|+.|++ +....+++.|+|.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 68999999999999999999999999999 999999999 35677899999999
Q ss_pred cceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 682 VPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|+++++ ++|+++.++.|. +.++|++.|+++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 9997777 999999999999 9999999998864
No 317
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=1.4e-07 Score=103.19 Aligned_cols=309 Identities=7% Similarity=-0.076 Sum_probs=208.0
Q ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCcHH-
Q 005108 241 DAEELKRMGNELYRKGC-FGEALSMYDKAISL---APRNAAFRSNRAAALT----GLGRIGEAVKECEEAVRLDPNYWR- 311 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~-~~~Al~~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~- 311 (714)
+.+.|..........++ .+.....|+.++.. ++.+..+|...+..+. ..++.+.+...|++++..-..+..
T Consensus 46 s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~ 125 (493)
T 2uy1_A 46 NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSE 125 (493)
T ss_dssp CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHH
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHH
Confidence 88888888888777764 45677889999975 7888888888887654 346788999999999996433332
Q ss_pred HHHHHHHHHH-------------HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC---------HHH
Q 005108 312 AHQRLGSLLV-------------RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD---------WKS 369 (714)
Q Consensus 312 a~~~la~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~---------~~~ 369 (714)
.|......-. ....+..|...|+.+....... .+..+..... + ..++ .+.
T Consensus 126 lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~------s~~~W~~y~~-~-E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 126 LWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW------SVKNAARLID-L-EMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------SHHHHHHHHH-H-HHTCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc------cHHHHHHHHH-H-HhcCCccCcchhhHHH
Confidence 2222222111 1123333444443332100000 0011111111 1 1111 345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchh--hhh------hhh-----------
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ--TRF------FGM----------- 430 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~------~~~----------- 430 (714)
....|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+..... ..+ ...
T Consensus 198 v~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 198 MHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccc
Confidence 678999999988864 888888999999999999999999999999 87632111 000 000
Q ss_pred -------hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-CHHHHHHH
Q 005108 431 -------LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-RFTEACQA 502 (714)
Q Consensus 431 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-~~~~A~~~ 502 (714)
.....+|...+..+.+.+..+.|...|+++ ...+.....|... +...+..+ +.+.|...
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~------------A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC------------AFIEYYATGSRATPYNI 342 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH------------HHHHHHHHCCSHHHHHH
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH------------HHHHHHHCCChHHHHHH
Confidence 001245667777777788899999999999 4333344454433 55455545 69999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 503 YGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 503 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
|+.+++..|+++..+...+......|+.+.|...|+++ +.....|......-...|+.+.+...++++++
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999888899899999999999999998 34567777777777788998888888887765
No 318
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.06 E-value=2.8e-10 Score=103.55 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc-----------------------chhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP-----------------------GVAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~-----------------------~l~~~~~v~~~ 682 (714)
.+++++.||++||+.|+...|.+.++..++++ +.|+.|+++... ++++.|+|.++
T Consensus 30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 109 (152)
T 2lja_A 30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGI 109 (152)
T ss_dssp TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSS
T ss_pred CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCC
Confidence 46899999999999999999999999999964 889999988754 68899999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
|+++++ ++|+++.+..|. +.++|++.|+++.
T Consensus 110 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 142 (152)
T 2lja_A 110 PRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142 (152)
T ss_dssp CCEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence 999999 599999999998 8899999998763
No 319
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.06 E-value=1.4e-10 Score=126.41 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=81.9
Q ss_pred eeehhhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecc--cCcchhhhCCccccceE
Q 005108 613 EEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDID--ESPGVAHAENVRIVPTF 685 (714)
Q Consensus 613 ~~i~~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d--~~~~l~~~~~v~~~Pt~ 685 (714)
..+.. +.|...+ ...++++|+||++||++|+.+.|.++++..++.+ +.|+.||++ +..++++.|+|.++||+
T Consensus 15 ~~Lt~-~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl 93 (519)
T 3t58_A 15 TLLDA-DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTV 93 (519)
T ss_dssp EEECT-TTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEE
T ss_pred EECCh-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEE
Confidence 33433 4566544 5567999999999999999999999999998864 999999995 58899999999999999
Q ss_pred EEEe----CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 686 KIYK----NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~----~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+ +|+.+....|. +.+.|+++|.++
T Consensus 94 ~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~ 125 (519)
T 3t58_A 94 RFFQAFTKNGSGATLPGAGANVQTLRMRLIDA 125 (519)
T ss_dssp EEECTTCCSCCCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEcCcccCCCceeEecCCCCHHHHHHHHHHH
Confidence 9998 56666666666 999999988764
No 320
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.06 E-value=3.5e-10 Score=103.69 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCceEEEeecCCCcccccc-chHHHHHHhhCC--CcEEEEEecc----------------------------cCc-----
Q 005108 628 PGVSVVHFKSASNLHCKQI-SPYVETLCGRYP--SINFLKVDID----------------------------ESP----- 671 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~--~~~~~~vd~d----------------------------~~~----- 671 (714)
.++++++||++||++|+.. .|.+.++..+|+ ++.|+.|+++ ...
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 5689999999999999996 999999999997 4889988853 222
Q ss_pred chhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 672 GVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 672 ~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+++.|+|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 150 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 58999999999998888 999999999999 999999998875
No 321
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.06 E-value=1.1e-10 Score=107.91 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEe----------------------------cccCcchhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVD----------------------------IDESPGVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd----------------------------~d~~~~l~~~ 676 (714)
..++++++||++||++|+.+.|.+.++..++ .++.|+.|+ .+...++++.
T Consensus 37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 116 (164)
T 2h30_A 37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN 116 (164)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence 4568999999999999999999999999886 346665554 4446678999
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+|.++|+++++ ++|+++.++.|. +.++|+++|+++
T Consensus 117 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~ 154 (164)
T 2h30_A 117 LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154 (164)
T ss_dssp TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred cCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 999999999988 999999999998 999999999875
No 322
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.06 E-value=1.5e-10 Score=134.97 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=82.3
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..+.++|...+...++++|+||++||++|+.+.|.++++...+.+ +.|++||+++.+++++.|+|.++||+++|++|+.
T Consensus 120 ~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 199 (780)
T 3apo_A 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMA 199 (780)
T ss_dssp ECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSC
T ss_pred eechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcE
Confidence 344567888888888999999999999999999999999999865 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.++
T Consensus 200 ~~~~~G~~~~~~l~~~l~~~ 219 (780)
T 3apo_A 200 AVKYNGDRSKESLVAFAMQH 219 (780)
T ss_dssp CEECCSCSCHHHHHHHHHTT
T ss_pred eeEecCCCCHHHHHHHHHHh
Confidence 9999999 999999999875
No 323
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.06 E-value=3.5e-10 Score=103.88 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=74.8
Q ss_pred CCceEEEeecCCCccccc-cchHHHHHHhhCCC--cEEEEEec----------------------------ccCcc----
Q 005108 628 PGVSVVHFKSASNLHCKQ-ISPYVETLCGRYPS--INFLKVDI----------------------------DESPG---- 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~-~~p~l~~l~~~~~~--~~~~~vd~----------------------------d~~~~---- 672 (714)
.++++|+||++||++|+. +.|.+.++..+|++ +.|+.|++ +....
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI 109 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence 568999999999999999 59999999999974 89999885 33344
Q ss_pred --hhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 --VAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 --l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|.++|+++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 110 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 153 (160)
T 3lor_A 110 PSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153 (160)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHH
T ss_pred hhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHH
Confidence 8999999999999888 799999999999 999999998875
No 324
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.04 E-value=6.7e-11 Score=108.72 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=65.7
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchH-H--HHHHhhCC-CcEEEEEecccCcchhhhC--------CccccceE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPY-V--ETLCGRYP-SINFLKVDIDESPGVAHAE--------NVRIVPTF 685 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~-l--~~l~~~~~-~~~~~~vd~d~~~~l~~~~--------~v~~~Pt~ 685 (714)
.+.+..+...+++++|+||++||++|+.+.|. + .++...+. ++.+++||+|+.++++..| +|.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 35566666678899999999999999998882 2 34444332 5889999999999999988 99999999
Q ss_pred EEE-eCCeEEEEEc
Q 005108 686 KIY-KNGSRMKEIV 698 (714)
Q Consensus 686 ~~~-~~G~~~~~~~ 698 (714)
++| ++|+++....
T Consensus 109 v~l~~dG~~v~~~t 122 (173)
T 3ira_A 109 IIMTPGKKPFFAGT 122 (173)
T ss_dssp EEECTTSCEEEEES
T ss_pred eeECCCCCceeeee
Confidence 999 5999998643
No 325
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.03 E-value=3.3e-10 Score=104.64 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=76.8
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhC---------------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAE--------------------------- 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~--------------------------- 677 (714)
..+++++.||++||++|+.+.|.+.++..++++ +.|+.|++++.++..+.|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 346899999999999999999999999999874 899999999877766666
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 149 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA 149 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 89999998888 999999999998 999999998875
No 326
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.03 E-value=2.9e-10 Score=102.79 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcc-------------------------hhhhCCc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPG-------------------------VAHAENV 679 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~-------------------------l~~~~~v 679 (714)
..+++++.||++||++|+...|.+.++..++++ +.|+.|++++.++ ++..|+|
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 356899999999999999999999999999864 9999999998776 9999999
Q ss_pred cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
.++|+++++ ++|+++.+..|. ..+.+.+.|.+
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 999999999 999999999888 66666655543
No 327
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.03 E-value=3.9e-10 Score=94.01 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=74.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSV-LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
.+|..+...|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|++.|+++++++|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4588888889999999999999998888888 88899999999999999999999999999888877643 67
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 005108 564 WADAVRDFEVLRRELPDD 581 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~ 581 (714)
+.+++..|+++...+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 788888888887777765
No 328
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.03 E-value=5.2e-10 Score=99.54 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=76.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEec----------------------------ccCcchhhhC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDI----------------------------DESPGVAHAE 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~----------------------------d~~~~l~~~~ 677 (714)
..+++++.||++||++|+...|.+.++..+++ ++.++.|+. +....+++.|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 34689999999999999999999999999986 488888842 3456789999
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|.++|+++++ ++|+++.+..|. +.++|.+.|++++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 138 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKELA 138 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHCC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhhC
Confidence 99999999999 999999999998 9999999998763
No 329
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=1.9e-09 Score=117.06 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHH
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGE 505 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 505 (714)
+..+......+..+..+|+|++|+.+++++++ +.++++.....++++ |.+|..+|+|++|+.+|++
T Consensus 306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nL---------a~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIA---------SEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------HHHHHHhcCHHHHHHHHHH
Confidence 33344455666778889999999999999986 467888877766554 9999999999999999999
Q ss_pred hhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhccHHHHHH
Q 005108 506 GLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 506 al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~ 569 (714)
++++ .|++ ...+++||.+|..+|++++|+.+|++|+++ .|+++ +....++.++..++++++|..
T Consensus 377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9975 3444 678999999999999999999999999974 67765 556788999999999999999
Q ss_pred HHHHHHHhC
Q 005108 570 DFEVLRREL 578 (714)
Q Consensus 570 ~~~~al~~~ 578 (714)
.|.++.+..
T Consensus 457 ~~~~~~~~~ 465 (490)
T 3n71_A 457 MYHKMREAA 465 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999986543
No 330
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.7e-09 Score=90.51 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=72.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD--DNEIAE 586 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 586 (714)
.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..+|+.+|.+|..+|++++|++.|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999998764 344444
Q ss_pred HHHHHH
Q 005108 587 SLFHAQ 592 (714)
Q Consensus 587 ~L~~~~ 592 (714)
.+..+.
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 331
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.02 E-value=1.7e-10 Score=122.32 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred hhhHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhhCC---------CcEEEEEecccCcchhhhCCccccceE
Q 005108 617 SLEQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGRYP---------SINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 617 ~~e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---------~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
+.++|...+... ++++|+||++||++|+.+.|.++++..+++ .+.|+.||+++.++++++|+|.++||+
T Consensus 29 t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTl 108 (470)
T 3qcp_A 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRL 108 (470)
T ss_dssp SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeE
Confidence 335677776543 589999999999999999999999999986 389999999999999999999999999
Q ss_pred EEEeCCeE--EEEEcC
Q 005108 686 KIYKNGSR--MKEIVC 699 (714)
Q Consensus 686 ~~~~~G~~--~~~~~g 699 (714)
++|++|.. +.++.|
T Consensus 109 ilf~~gg~~~~~~y~G 124 (470)
T 3qcp_A 109 FFFYPRDSCRSNEECG 124 (470)
T ss_dssp EEEEESSCCCTTSCCC
T ss_pred EEEECCCceEEEEeeC
Confidence 99975542 344445
No 332
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.01 E-value=2.9e-09 Score=86.79 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+...++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777666655
Q ss_pred HH
Q 005108 593 VS 594 (714)
Q Consensus 593 ~~ 594 (714)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 333
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.99 E-value=5.5e-10 Score=101.66 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
.+++++.||++||++|+...|.+.++..++++ +.++.|+++. ...+++.|+|.
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 46899999999999999999999999998864 8999999987 46789999999
Q ss_pred ccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 681 IVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+++++ ++|+++.+..+ .++|++.|+++
T Consensus 109 ~~P~~~lid~~G~i~~~~~~--~~~l~~~l~~l 139 (152)
T 2lrn_A 109 GFPHIILVDPEGKIVAKELR--GDDLYNTVEKF 139 (152)
T ss_dssp SSCEEEEECTTSEEEEECCC--TTHHHHHHHHH
T ss_pred cCCeEEEECCCCeEEEeeCC--HHHHHHHHHHH
Confidence 99999888 99999998653 35566666553
No 334
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.99 E-value=6.7e-10 Score=100.99 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc----------------------chhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP----------------------GVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~----------------------~l~~~~~v~~~P 683 (714)
.+++++.||++||+.|+...|.+.++..++++ +.++.|+++... ++++.|+|.++|
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 107 (152)
T 3gl3_A 28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP 107 (152)
T ss_dssp TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence 46899999999999999999999999999864 899999988654 678899999999
Q ss_pred eEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.+..|. +.++|++.|+++
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 108 TSFLIDRNGKVLLQHVGFRPADKEALEQQILAA 140 (152)
T ss_dssp EEEEECTTSBEEEEEESCCTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEccCCCcCHHHHHHHHHHH
Confidence 98877 999999999996 557899988875
No 335
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.99 E-value=4.2e-10 Score=104.38 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=71.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec-----------------------ccCcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI-----------------------DESPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~-----------------------d~~~~l~~~~~v~~~P 683 (714)
..++++++||++||++|+.+.|.++++..+ ++.++.|++ |....++..|+|.++|
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 127 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 127 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence 466899999999999999999999999887 788888884 4566789999999999
Q ss_pred eE-EEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TF-KIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~-~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++ +|.++|+++.++.|. +.+.+++.|+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 55 555999999999998 888888877653
No 336
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.99 E-value=5.1e-10 Score=122.75 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=83.5
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
..+.|...+.. .+.++|+||++||++|+.+.|.++++...+. ++.|+++|++.+ +++..|+|.++||+++|++|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 34566665544 6789999999999999999999999999886 488999999988 899999999999999998887
Q ss_pred E--EEEEcCC-CHHHHHHHHhhhc
Q 005108 693 R--MKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~--~~~~~g~-~~~~l~~~~~~~~ 713 (714)
. +.++.|. +.+.|.++|+++.
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 6 6788898 9999999998864
No 337
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.98 E-value=8.5e-10 Score=99.70 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=73.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhC-CC--cEEEEEeccc-------------------------CcchhhhCC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRY-PS--INFLKVDIDE-------------------------SPGVAHAEN 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~--~~~~~vd~d~-------------------------~~~l~~~~~ 678 (714)
..+++++.||++||++|+...|.+.++..++ ++ +.|+.|+++. ...++..|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 3568999999999999999999999999999 53 8999998886 347899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.+.. +.+.|++.|+++
T Consensus 112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 144 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKEL 144 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHH
Confidence 9999999988 9999998876 788888888764
No 338
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.97 E-value=7e-10 Score=116.80 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=80.0
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEecccCcchhhhCCccccceEEEEeCC--e
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDESPGVAHAENVRIVPTFKIYKNG--S 692 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G--~ 692 (714)
+.|...+ ...+.++|.||++||++|+.+.|.++++...+.+ +.+++||++.+. +..|+|.++||+++|++| +
T Consensus 257 ~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~~ 334 (361)
T 3uem_A 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADR 334 (361)
T ss_dssp TTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSSC
T ss_pred CchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCCc
Confidence 4555544 5677999999999999999999999999999864 889999998877 789999999999999655 6
Q ss_pred EEEEEcCC-CHHHHHHHHhhhc
Q 005108 693 RMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
.+.++.|. +.+.|.++|++.+
T Consensus 335 ~~~~~~G~~~~~~l~~~l~~~~ 356 (361)
T 3uem_A 335 TVIDYNGERTLDGFKKFLESGG 356 (361)
T ss_dssp CCEECCSCSSHHHHHHHHTTTS
T ss_pred ceeEecCCCCHHHHHHHHHhcC
Confidence 67888898 9999999998764
No 339
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.97 E-value=8.7e-10 Score=100.72 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----------------------cCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----------------------ESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----------------------~~~~l~~~~~v~~~Pt 684 (714)
.+++++.||++||++|+.+.|.+.++..+ +++.|+.|+++ ....+++.|+|.++|+
T Consensus 42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 120 (156)
T 1kng_A 42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE 120 (156)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence 56899999999999999999999999887 66999988864 3557888999999997
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 121 ~~~id~~G~i~~~~~g~~~~~~l~~~l~~~ 150 (156)
T 1kng_A 121 TFVVGREGTIVYKLVGPITPDNLRSVLLPQ 150 (156)
T ss_dssp EEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred EEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 6555 999999999999 888888888764
No 340
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=98.96 E-value=3.8e-10 Score=94.26 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--cCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l 705 (714)
..+.++.|+++||++|+++.+.|+++.. ++.|..||++ +.++++..|+ +.+|++ +.+|+.+ .+.|++.++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 3467889999999999999999987653 3889999999 7889999999 999976 5799876 5667799999
Q ss_pred HHHHhhh
Q 005108 706 EHSVRHY 712 (714)
Q Consensus 706 ~~~~~~~ 712 (714)
+++|+++
T Consensus 88 ~~~l~~~ 94 (100)
T 1wjk_A 88 EKQLRKL 94 (100)
T ss_dssp HHHHHSS
T ss_pred HHHHHHH
Confidence 9999875
No 341
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=1.3e-08 Score=90.83 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK- 526 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 526 (714)
+++++|+++|+++.+....... + |.+|...+.+++|+++|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----l------------g~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----L------------SLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----H------------HHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----H------------HHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 5789999999999988754443 4 88899999999999999999987 689999999999999
Q ss_pred ---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 527 ---LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 527 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.+++++|+++|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+.. ++.....|
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 89999999999999987 679999999999999 899999999999999874 45554443
No 342
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.95 E-value=1.1e-09 Score=98.40 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCceEEEeecCCCccccccchHHHH---HHhhC--CCcEEEEEecccCcc------------------------hhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET---LCGRY--PSINFLKVDIDESPG------------------------VAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~---l~~~~--~~~~~~~vd~d~~~~------------------------l~~~~~ 678 (714)
.++++++||++||++|+...|.+.+ +.+++ .++.++.|++|...+ ++..|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 4689999999999999999999999 88887 469999999887533 478999
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
|.++|+++++ ++|+++.+..+ .++|+++|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CCcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 9999998888 99999988765 6888888763
No 343
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.95 E-value=1.3e-09 Score=99.84 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------CcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------SPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||+.|+...|.+.++..+++ ++.|+.|+++. ..++++.|+|.++|+++
T Consensus 41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 120 (158)
T 3hdc_A 41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTF 120 (158)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEE
Confidence 4689999999999999999999999999997 69999999987 67899999999999977
Q ss_pred EE-eCCeEEEEEcCC---CHHHHHHHHhh
Q 005108 687 IY-KNGSRMKEIVCP---SRDMLEHSVRH 711 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~---~~~~l~~~~~~ 711 (714)
++ ++|+++.++.|. +.+++.+.+++
T Consensus 121 lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 121 IVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 66 999999999998 44555555544
No 344
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.95 E-value=3.2e-09 Score=88.85 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=71.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--WRAHQ 314 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~ 314 (714)
.+|+++..++.+|.+++..|++++|+.+|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999999999886643 34444
Q ss_pred HHHHHHHH
Q 005108 315 RLGSLLVR 322 (714)
Q Consensus 315 ~la~~~~~ 322 (714)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 345
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.95 E-value=5.8e-10 Score=123.03 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=80.1
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
+.|...+ ...+.++|+||++||++|+.+.|.++++..+++ ++.++++|++.+... . |+|.++||+++|++|+.
T Consensus 366 ~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~ 443 (504)
T 2b5e_A 366 KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKK 443 (504)
T ss_dssp TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTS
T ss_pred ccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCce
Confidence 4566554 456789999999999999999999999998875 699999999887654 4 99999999999999987
Q ss_pred --EEEEcCC-CHHHHHHHHhhhc
Q 005108 694 --MKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 --~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+.++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 444 SESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp CCCCBCCSCCCHHHHHHHHHHHC
T ss_pred ecceEecCCCCHHHHHHHHHhcC
Confidence 7788898 9999999998753
No 346
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.94 E-value=1.2e-09 Score=99.54 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=75.0
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec-----------------------ccCcchhhhCCccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI-----------------------DESPGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~-----------------------d~~~~l~~~~~v~~ 681 (714)
..+++++.||++||+.|+...|.+.++..+++ ++.++.|++ +....+++.|+|..
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 35689999999999999999999999999886 478876653 45667899999999
Q ss_pred cceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 682 VPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.++.|. +.+.|.+.|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 139 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 9999988 999999999998 999999998874
No 347
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.94 E-value=1.7e-09 Score=99.91 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc------------------cC------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID------------------ES------------------ 670 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d------------------~~------------------ 670 (714)
..+++++.||+.||++|+...|.+.++..+++++.|+.|+++ +.
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence 346899999999999999999999999999999999999998 44
Q ss_pred ----cchhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 671 ----PGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 671 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..++..|+|.++|+++++ ++|+++. .... +.++|++.|+++
T Consensus 116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l 162 (165)
T 3ha9_A 116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSV 162 (165)
T ss_dssp EECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC
T ss_pred EeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHH
Confidence 378999999999999888 8999998 3333 789999999875
No 348
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.91 E-value=1.6e-09 Score=101.14 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----------------------cCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----------------------ESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----------------------~~~~l~~~~~v~~~Pt 684 (714)
.+++++.||++||++|+...|.+.++..+ ++.|+.|+++ ....++..|+|..+|+
T Consensus 58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 135 (176)
T 3kh7_A 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE 135 (176)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence 46899999999999999999999999887 7888888863 3556788999999997
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++.++.|. +.+.+++.|+++
T Consensus 136 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 136 TYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp EEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 7666 999999999999 888888877654
No 349
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.90 E-value=2e-09 Score=98.04 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccC-----------------------cchhhhCCccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDES-----------------------PGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~-----------------------~~l~~~~~v~~ 681 (714)
..+++++.||++||+.|+...|.+.++..++++ +.|+.|+++.. ..++..|+|.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 346899999999999999999999999999975 88999998875 44888999999
Q ss_pred cceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 682 VPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.++.|. +.+++.+.|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 9976665 999999999998 567898888875
No 350
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=2.5e-09 Score=97.03 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred CCceEEEeecCCCcc--ccccchHHHHHHhhC---CCcEEEEEecccCc-------------------------chhhhC
Q 005108 628 PGVSVVHFKSASNLH--CKQISPYVETLCGRY---PSINFLKVDIDESP-------------------------GVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~--C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~-------------------------~l~~~~ 677 (714)
.++++++||++||++ |+...|.+.++..+| .++.|+.|++|..+ .+++.|
T Consensus 33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 112 (150)
T 3fw2_A 33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY 112 (150)
T ss_dssp TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence 468999999999999 999999999999998 35899999988754 688999
Q ss_pred CccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.+.. +.++|++.|+++
T Consensus 113 ~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 146 (150)
T 3fw2_A 113 SIYKIPANILLSSDGKILAKNL--RGEELKKKIENI 146 (150)
T ss_dssp TCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHH
Confidence 99999999998 9999998875 677777777654
No 351
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.89 E-value=1.4e-09 Score=106.46 Aligned_cols=77 Identities=10% Similarity=-0.040 Sum_probs=68.4
Q ss_pred ecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 636 KSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 636 ~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|++||++|+.+.|.+.++..++ +.+.|++||+++.++++++|+|+++||+++|++|+...++.|. +.+.+..++..
T Consensus 33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~ 112 (229)
T 2ywm_A 33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLING 112 (229)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCCCTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCccHHHHHHHHHH
Confidence 4889999999999999987665 4599999999999999999999999999999988888999998 88888888765
Q ss_pred h
Q 005108 712 Y 712 (714)
Q Consensus 712 ~ 712 (714)
+
T Consensus 113 ~ 113 (229)
T 2ywm_A 113 I 113 (229)
T ss_dssp H
T ss_pred H
Confidence 3
No 352
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.89 E-value=1.4e-09 Score=102.31 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--c------EEEEEeccc-CcchhhhC---------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--I------NFLKVDIDE-SPGVAHAE--------------------- 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~------~~~~vd~d~-~~~l~~~~--------------------- 677 (714)
.++++|+||++||++|+...|.|.++..++++ + .|+.|+++. .++..+.|
T Consensus 59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 138 (183)
T 3lwa_A 59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAAS 138 (183)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGG
T ss_pred CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHH
Confidence 46899999999999999999999999998853 7 999999988 56555544
Q ss_pred ----CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 ----NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ----~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 139 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 179 (183)
T 3lwa_A 139 LGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL 179 (183)
T ss_dssp TTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHH
T ss_pred hccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 78999976555 999999999998 999999999875
No 353
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=6.4e-09 Score=86.48 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 005108 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRNAA-FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 245 ~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 323 (714)
.+.+|..++..|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred CCHHHHHHHHHhhc
Q 005108 324 GQVENARRHLCLSG 337 (714)
Q Consensus 324 g~~~~A~~~~~~al 337 (714)
+.+.+++..|++++
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 55677777776664
No 354
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.88 E-value=2.2e-09 Score=96.30 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHH---HHhhCC--CcEEEEEecccCcch------------------------hhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET---LCGRYP--SINFLKVDIDESPGV------------------------AHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~---l~~~~~--~~~~~~vd~d~~~~l------------------------~~~~~ 678 (714)
.++++++||++||++|+...|.+.+ +..+++ ++.++.|++|+.++. +..|+
T Consensus 27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (142)
T 3ewl_A 27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD 106 (142)
T ss_dssp CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence 5689999999999999999999888 777773 599999999875543 45899
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++. .+.+.++|++.|+++
T Consensus 107 v~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC-
T ss_pred CCCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHH
Confidence 9999999888 8999887 244899999999875
No 355
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.87 E-value=2.8e-09 Score=95.79 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccC--------------------------cchhhhCCc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDES--------------------------PGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~--------------------------~~l~~~~~v 679 (714)
.++++++||+.||++|+...|.+.++..+|+ ++.++.|++|.. ..+++.|+|
T Consensus 32 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 111 (143)
T 4fo5_A 32 GRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL 111 (143)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTG
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCC
Confidence 4689999999999999999999999999996 489999988743 246789999
Q ss_pred cccceEEEE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
..+|+++++ ++|+++.+.. +.++|++.|++
T Consensus 112 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ 142 (143)
T 4fo5_A 112 RKGFKNFLINDEGVIIAANV--TPEKLTEILKA 142 (143)
T ss_dssp GGCCCEEEECTTSBEEEESC--CHHHHHHHHTC
T ss_pred CCCCcEEEECCCCEEEEccC--CHHHHHHHHHh
Confidence 999988777 7999988754 56778888765
No 356
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.87 E-value=1.6e-08 Score=89.53 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHHH
Q 005108 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG---QWERSVEDSNQALLIQ-P-NYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
....+.+.|.+.++.++.+.++.+++|+++.+.+ ++++++..++.+++.+ | +..+.+|.+|..|+++|+|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788888888888899999999999999988 7779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 570 DFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 570 ~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++++++++|++.++......+...+.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877776654
No 357
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.86 E-value=2e-09 Score=97.85 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcc-----------------------hhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPG-----------------------VAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~-----------------------l~~~~~v~~~ 682 (714)
.+++++.||++||++|+...|.+.++..+++ ++.++.|++|...+ ++..|+|..+
T Consensus 35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~ 114 (152)
T 2lrt_A 35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL 114 (152)
T ss_dssp GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence 4589999999999999999999999999886 48999999887653 8889999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHH
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~ 707 (714)
|+++++ ++|+++.+..|. +.++...
T Consensus 115 P~~~lid~~G~i~~~~~g~~~~e~~~~ 141 (152)
T 2lrt_A 115 PSVFLVNRNNELSARGENIKDLDEAIK 141 (152)
T ss_dssp SEEEEEETTTEEEEETTTCSCHHHHHH
T ss_pred ceEEEECCCCeEEEecCCHHHHHHHHH
Confidence 999888 899999999999 6655443
No 358
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=4.5e-08 Score=100.05 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----C---c-C---HHHH
Q 005108 434 AYTFFVRAQIEMALGR---FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----S---E-R---FTEA 499 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~---g-~---~~~A 499 (714)
++-++..|..++..++ +.+|+.+|+++++++|++..++..+ +.+|.. . + . ...|
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~l------------a~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK------------ALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhccCCCchhhHHHHHHH
Confidence 6667777887777644 6899999999999999999888755 222211 0 0 1 1122
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 500 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+.. ..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|
T Consensus 264 ~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 264 IDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 221 1234667999999999999999999999999999999999975 67889999999999999999999999999999
Q ss_pred CCH
Q 005108 580 DDN 582 (714)
Q Consensus 580 ~~~ 582 (714)
..+
T Consensus 342 ~~~ 344 (372)
T 3ly7_A 342 GAN 344 (372)
T ss_dssp SHH
T ss_pred CcC
Confidence 875
No 359
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.86 E-value=1.5e-09 Score=126.55 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=83.5
Q ss_pred hHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|.. ++....+++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+.+++.|+|.++||+++|++|+.+.+
T Consensus 665 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 744 (780)
T 3apo_A 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS 744 (780)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTTE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCcccc
Confidence 55654 44566789999999999999999999999999985 69999999999999999999999999999999999888
Q ss_pred EcC----C-CHHHHHHHHhhh
Q 005108 697 IVC----P-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g----~-~~~~l~~~~~~~ 712 (714)
+.| . +.+.|.++|+++
T Consensus 745 ~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 745 IWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp EEEEEECCCCHHHHHHHHHHH
T ss_pred ccCcccCCcCHHHHHHHHHHH
Confidence 877 3 899999998874
No 360
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.82 E-value=7.2e-10 Score=95.69 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=64.5
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----cchhhhCCccccceEEEEeCCeEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----PGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
.+..++.. ..+++ ||++||++|+.+.|.|+++... +.++.||.+.. .++++.|+|.++||+ |.+|+.+
T Consensus 12 ~~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v 84 (116)
T 2e7p_A 12 KAKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQI 84 (116)
T ss_dssp HHHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred HHHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 33444433 34444 9999999999999999988654 34555555544 468999999999999 6699999
Q ss_pred EEEcCC----CHHHHHHHHhhhc
Q 005108 695 KEIVCP----SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~----~~~~l~~~~~~~~ 713 (714)
.++.|. +.++|+++|++++
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~g 107 (116)
T 2e7p_A 85 GGCDTVVEKHQRNELLPLLQDAA 107 (116)
T ss_dssp ECHHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHHHHHHhCChHHHHHHHcc
Confidence 877665 5667888888764
No 361
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.82 E-value=5.3e-09 Score=98.88 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec-----------------------------ccCcchhhhC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI-----------------------------DESPGVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~-----------------------------d~~~~l~~~~ 677 (714)
.++++|+||++||++|+...|.++++..++.+ +.|+.|++ |...++++.|
T Consensus 33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 112 (188)
T 2cvb_A 33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY 112 (188)
T ss_dssp SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence 46899999999999999999999999999977 89999988 3356789999
Q ss_pred CccccceEEEE-eCCeEEEE--------EcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKE--------IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~--------~~g~-~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.+ +.|. +.++|++.|+++
T Consensus 113 ~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 113 RALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp TCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 99999999888 99999887 2233 678888888765
No 362
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.82 E-value=1.2e-08 Score=110.71 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---C
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISL-----APRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRL-----D---P 307 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~---p 307 (714)
.....+..+..+|+|++|+.+|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ . |
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445566678899999999999999986 3444 567889999999999999999999999875 3 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC--C
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF--S 385 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~--~ 385 (714)
+-...+.+||.+|..+|++++|+.+|++++ +.+++.+ +|++ .
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al----------------------------------~i~~~~l--G~~Hp~~ 434 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAY----------------------------------AILLVTH--GPSHPIT 434 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------------HHHHHHT--CTTSHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------HHHHHHh--CCCChHH
Confidence 446788999999999999999999987764 2222222 2222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcccc
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPK 414 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (714)
..+..+++.++..++++++|...|.++.+
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777788888888877777654
No 363
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.81 E-value=4.6e-09 Score=108.52 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc---------------------------cCcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID---------------------------ESPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d---------------------------~~~~l~~~~~ 678 (714)
.++++|+||++||++|+.+.|.|.++..+++ ++.|+.|+++ ....+++.|+
T Consensus 82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg 161 (352)
T 2hyx_A 82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR 161 (352)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence 5689999999999999999999999999986 4899999764 2457889999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 162 V~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~l 197 (352)
T 2hyx_A 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQL 197 (352)
T ss_dssp CCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHH
T ss_pred CCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998888 999999999998 899999988874
No 364
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.81 E-value=6.2e-09 Score=114.88 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLE 706 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~ 706 (714)
....++.||++||++|+++.|.++++...++++.|.++|+++.+++++.|+|+++||+++ ||+.+.+ |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999977 9998865 88 999999
Q ss_pred HHHhhh
Q 005108 707 HSVRHY 712 (714)
Q Consensus 707 ~~~~~~ 712 (714)
++|++.
T Consensus 193 ~~l~~~ 198 (521)
T 1hyu_A 193 AKVDTG 198 (521)
T ss_dssp HHHCCS
T ss_pred HHHhhc
Confidence 988653
No 365
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.80 E-value=3.5e-09 Score=100.86 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=72.7
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-----------------------------cCcchhhhCC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-----------------------------ESPGVAHAEN 678 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-----------------------------~~~~l~~~~~ 678 (714)
+++++||++||++|+...|.+.++..++. ++.|+.|+++ ...++++.|+
T Consensus 48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 127 (196)
T 2ywi_A 48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD 127 (196)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence 49999999999999999999999999886 4999999983 3567899999
Q ss_pred ccccceEEEE-eCCeEEEE---------EcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKE---------IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~---------~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.+ +.|. +.++|++.|+++
T Consensus 128 v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 128 AACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp CCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 9999998888 89999988 4577 889999988875
No 366
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.79 E-value=4.3e-08 Score=87.35 Aligned_cols=120 Identities=10% Similarity=0.002 Sum_probs=102.1
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
+++++|+.+|+++.+..... + . +|.+|...+.+++|+++|+++.+. .++.+++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--------------a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L----- 63 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--------------G--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL----- 63 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--------------H--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH-----
T ss_pred cCHHHHHHHHHHHHcCCCHh--------------h--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH-----
Confidence 46788999999998877554 3 3 899999999999999999999986 567777665
Q ss_pred HHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 480 VARARARGNDLFK----SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 480 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+. .+..+.
T Consensus 64 -------g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 132 (138)
T 1klx_A 64 -------GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDAC 132 (138)
T ss_dssp -------HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred -------HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHH
Confidence 999998 89999999999999987 689999999999999 99999999999999987 455666
Q ss_pred HHHH
Q 005108 552 LRRA 555 (714)
Q Consensus 552 ~~la 555 (714)
..++
T Consensus 133 ~~l~ 136 (138)
T 1klx_A 133 GILN 136 (138)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 6554
No 367
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=98.79 E-value=1.2e-09 Score=87.24 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=56.4
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLE 706 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~ 706 (714)
.++.|+++||++|+.+.|.++++..++. .+.++.||.+ +..+++..|||+++||+++ ||+.+. +|. +.++|+
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l~ 78 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDLK 78 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHHC
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHhh
Confidence 3678999999999999999999987764 3555555554 5778899999999999877 998764 343 666664
No 368
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.79 E-value=4.3e-09 Score=97.10 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=63.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++|+||++||++|+.+.|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 127 (165)
T 3s9f_A 48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE 127 (165)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence 4689999999999999999999999999986 488999998876 6789999999
Q ss_pred ccceEEEE-eC-CeEEEEEcC
Q 005108 681 IVPTFKIY-KN-GSRMKEIVC 699 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~~~~g 699 (714)
.+|+++++ ++ |+++.+..+
T Consensus 128 ~~Pt~~lid~~~G~iv~~~~~ 148 (165)
T 3s9f_A 128 SIPTLIGLNADTGDTVTTRAR 148 (165)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEeCCCCEEEecccH
Confidence 99999988 55 999886543
No 369
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.78 E-value=6.7e-09 Score=102.23 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=80.4
Q ss_pred eehhhhHHhhhccC-CCceEEEeecCC--CccccccchHHHHHHhhCCC------cEEEEEecccCcchhhhCCccccce
Q 005108 614 EVSSLEQFRAAVSL-PGVSVVHFKSAS--NLHCKQISPYVETLCGRYPS------INFLKVDIDESPGVAHAENVRIVPT 684 (714)
Q Consensus 614 ~i~~~e~~~~~i~~-~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~------~~~~~vd~d~~~~l~~~~~v~~~Pt 684 (714)
.....++++..+.. .++++++||++| |++|+++.+.++++...++. +.|+++|+++.++++..|+|+++||
T Consensus 10 ~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt 89 (243)
T 2hls_A 10 SEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPT 89 (243)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCE
Confidence 34555677766644 468899999999 99999999999999988765 9999999999999999999999999
Q ss_pred EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 685 FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 685 ~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++++ +| ..++.|. +.+.+..++..
T Consensus 90 ~~i~-~g--~~~~~G~~~~~~l~~fv~~ 114 (243)
T 2hls_A 90 VAFL-GG--EVRWTGIPAGEEIRALVEV 114 (243)
T ss_dssp EEET-TT--TEEEESCCCTTHHHHHHHH
T ss_pred EEEE-CC--ceeEcCCCcHHHHHHHHHH
Confidence 9999 77 7778787 77778777665
No 370
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=98.78 E-value=1.2e-09 Score=108.80 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=59.6
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe---c-ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD---I-DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd---~-d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.+++|+++||++|+++.|.++++.++++ ++.+| . ++.++++++|+|+++||+++ ||++ +.|. +.++|
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L 271 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEAL 271 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHH
Confidence 3689999999999999999999987764 44444 2 34789999999999999655 9974 7788 99999
Q ss_pred HHHHh
Q 005108 706 EHSVR 710 (714)
Q Consensus 706 ~~~~~ 710 (714)
+++++
T Consensus 272 ~~~l~ 276 (291)
T 3kp9_A 272 AVASG 276 (291)
T ss_dssp HHHTC
T ss_pred HHHHC
Confidence 98875
No 371
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=7.2e-10 Score=101.73 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHH-HHhhCC---CcEEEEEecccCcchhhhC----------------------C--c
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET-LCGRYP---SINFLKVDIDESPGVAHAE----------------------N--V 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~-l~~~~~---~~~~~~vd~d~~~~l~~~~----------------------~--v 679 (714)
.+++++.||++||++|+...|.+.+ +..++. ++.++.|++|+.++..++| + +
T Consensus 33 gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 112 (159)
T 2ls5_A 33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRD 112 (159)
Confidence 4588999999999999999999998 877775 5889999888765544444 3 6
Q ss_pred cccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
.++|+++++ ++|+++.+..|.+.+++++.|+++
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l 146 (159)
T 2ls5_A 113 AGITRNVLIDREGKIVKLTRLYNEEEFASLVQQI 146 (159)
Confidence 779999888 999999999898777788777664
No 372
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.75 E-value=1.9e-08 Score=93.38 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhC------CCcEEEEEecccC----------------------------cc
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRY------PSINFLKVDIDES----------------------------PG 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~------~~~~~~~vd~d~~----------------------------~~ 672 (714)
.+++++.||++||++ |....|.+.++..++ .++.++.|++|.. ..
T Consensus 26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (171)
T 2rli_A 26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ 105 (171)
T ss_dssp TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 468999999999998 999999999999888 4799999988731 14
Q ss_pred hhhhCCccccc---------------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 VAHAENVRIVP---------------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 l~~~~~v~~~P---------------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|..+| +++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 162 (171)
T 2rli_A 106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRH 162 (171)
T ss_dssp HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 78899999888 65555 999999999998 888898888764
No 373
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.75 E-value=4.8e-09 Score=94.63 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++++||++||++|+...|.+.++..+++ ++.++.|++|+. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (146)
T 1o8x_A 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 107 (146)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence 4689999999999999999999999999886 588999988863 4688999999
Q ss_pred ccceEEEEe--CCeEEEEEcC
Q 005108 681 IVPTFKIYK--NGSRMKEIVC 699 (714)
Q Consensus 681 ~~Pt~~~~~--~G~~~~~~~g 699 (714)
++|+++++. +|+++.+..+
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 108 SIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEECCCCeEEEecch
Confidence 999999886 9999887543
No 374
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.74 E-value=1.9e-07 Score=91.41 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-hccHH
Q 005108 495 RFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKL-----GQWERSVEDSNQALLIQPNY-TKALLRRAASNSK-LEKWA 565 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~ 565 (714)
...+|...++++++++|+ +..+|..+|.+|.+. |+.++|.++|+++++++|+. ..+++.+|..++. +|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 467899999999999999 677999999999995 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHHHHhCCCC
Q 005108 566 DAVRDFEVLRRELPDD 581 (714)
Q Consensus 566 eA~~~~~~al~~~p~~ 581 (714)
+|.+++++++..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999988763
No 375
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.74 E-value=5.2e-09 Score=94.11 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++++||++||++|+.+.|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (144)
T 1i5g_A 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK 107 (144)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence 4689999999999999999999999999886 588999998863 4688999999
Q ss_pred ccceEEEE--eCCeEEEEEc
Q 005108 681 IVPTFKIY--KNGSRMKEIV 698 (714)
Q Consensus 681 ~~Pt~~~~--~~G~~~~~~~ 698 (714)
.+|+++++ ++|+++.+..
T Consensus 108 ~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 108 SIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCcEEeccc
Confidence 99999988 5999988654
No 376
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=98.74 E-value=6.8e-09 Score=83.85 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=62.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc----chhhhCC--ccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP----GVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
.++.|+++||+.|+.+.+.|+++..+++++.|..+|+++.+ ++++.++ |.++|++ +.+|+.+. |. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~ 74 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TD 74 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HH
Confidence 36789999999999999999999988888999999998754 7888999 9999998 45898764 33 56
Q ss_pred HHHHHhh
Q 005108 705 LEHSVRH 711 (714)
Q Consensus 705 l~~~~~~ 711 (714)
|..++++
T Consensus 75 l~~~~~~ 81 (85)
T 1ego_A 75 FAAWVKE 81 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 377
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=98.71 E-value=3e-08 Score=91.16 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhC------CCcEEEEEecccCc----------------------------c
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRY------PSINFLKVDIDESP----------------------------G 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~------~~~~~~~vd~d~~~----------------------------~ 672 (714)
.+++++.||+.||++ |....|.+.++..++ +++.++.|++|... .
T Consensus 23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 102 (164)
T 2ggt_A 23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ 102 (164)
T ss_dssp TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 468999999999998 999999999998877 37889998887521 3
Q ss_pred hhhhCCccccc---------------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 VAHAENVRIVP---------------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 l~~~~~v~~~P---------------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|..+| +++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 103 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 159 (164)
T 2ggt_A 103 VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 159 (164)
T ss_dssp HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 78899999999 55555 999999999998 888888888764
No 378
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.70 E-value=9.4e-08 Score=78.27 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 510 DPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 58899999999999987766 799999999999999999999999999999999999999999999999998543
No 379
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.70 E-value=2.4e-08 Score=94.14 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccC-----cchhhhCCcc--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDES-----PGVAHAENVR-------------------- 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~-----~~l~~~~~v~-------------------- 680 (714)
.++++++||++||++|+...|.+.++..++. ++.++.|++|.. .+.++.+++.
T Consensus 60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 139 (186)
T 1jfu_A 60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG 139 (186)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT
T ss_pred CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc
Confidence 4689999999999999999999999999886 699999998864 2345556653
Q ss_pred ---ccceEEEE-eCCeEEEEEcCC-C--HHHHHHHHhhh
Q 005108 681 ---IVPTFKIY-KNGSRMKEIVCP-S--RDMLEHSVRHY 712 (714)
Q Consensus 681 ---~~Pt~~~~-~~G~~~~~~~g~-~--~~~l~~~~~~~ 712 (714)
++|+++++ ++|+++.++.|. + .++|++.|+++
T Consensus 140 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 140 RALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp CCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89998888 999999999998 4 68888888875
No 380
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.69 E-value=9.5e-09 Score=92.33 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=62.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.+++++.||++||++|+...|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (144)
T 1o73_A 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE 107 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence 4689999999999999999999999999886 588999988863 3588899999
Q ss_pred ccceEEEEe--CCeEEEEEc
Q 005108 681 IVPTFKIYK--NGSRMKEIV 698 (714)
Q Consensus 681 ~~Pt~~~~~--~G~~~~~~~ 698 (714)
++|+++++. +|+++.+..
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 108 SIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCeEEecch
Confidence 999999987 999887654
No 381
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=98.69 E-value=1.7e-08 Score=97.73 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecc-----------------------------cCcchhhhCC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDID-----------------------------ESPGVAHAEN 678 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d-----------------------------~~~~l~~~~~ 678 (714)
+++|.||++||++|+...|.|.++..++.+ +.|+.|+++ ....+++.|+
T Consensus 61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~ 140 (218)
T 3u5r_E 61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYG 140 (218)
T ss_dssp EEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHT
T ss_pred eEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcC
Confidence 599999999999999999999999999964 899999984 4567899999
Q ss_pred ccccceEEEE-eCCeEEEEEc---------CC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIV---------CP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~---------g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.+-. +. +.++|++.|+++
T Consensus 141 v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 141 AACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 9999999988 9999986532 23 578888888774
No 382
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=5e-07 Score=88.46 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhC-----cCHHHHHHHHHHhhccCCCC-HHHHHHH
Q 005108 449 RFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKS-----ERFTEACQAYGEGLRFDPSN-SVLYCNR 520 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l 520 (714)
...+|...++++++++|+ +..+|..+ |.+|... |+.++|.++|+++++++|+. ...++.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~L------------G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVL------------TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHH------------HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHH------------HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 368999999999999999 55577766 8889985 99999999999999999975 9999999
Q ss_pred HHHHHH-hCCHHHHHHHHHHHHHhCCC
Q 005108 521 AACWFK-LGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 521 a~~~~~-~g~~~~A~~~~~~al~~~p~ 546 (714)
|..++. .|++++|.+++++++..+|.
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999988 59999999999999998776
No 383
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=98.66 E-value=2.8e-08 Score=92.20 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=71.4
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEecccC----------------------------cch
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDIDES----------------------------PGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~----------------------------~~l 673 (714)
.+++++.||+.||++ |+...|.+.++..++. ++.++.|++|.. ..+
T Consensus 35 gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 114 (172)
T 2k6v_A 35 DKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREA 114 (172)
T ss_dssp TSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence 468999999999998 9999999999999997 699999998742 245
Q ss_pred hhhCC---------------ccccceEEEEeCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 674 AHAEN---------------VRIVPTFKIYKNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 674 ~~~~~---------------v~~~Pt~~~~~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
++.|+ |..+|+++++.+|+++.++.|. +.++|.+.|+++
T Consensus 115 ~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 115 AQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 55554 5789998888899999998877 788999988874
No 384
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=1.8e-07 Score=76.63 Aligned_cols=72 Identities=21% Similarity=0.074 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 238 CGGDAEELKRMGNELYRKGC---FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
+|++++.+..+|.+++..++ .++|..+++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57889999999999987766 7999999999999999999999999999999999999999999999999884
No 385
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=98.10 E-value=2.8e-09 Score=95.65 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=61.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccC-------------------------cchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDES-------------------------PGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~-------------------------~~l~~~~~v~ 680 (714)
++++.||++||++|+.+.|.+.++..++ +++.++.|++++. ..+++.|+|.
T Consensus 28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (143)
T 2lus_A 28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT 107 (143)
Confidence 8999999999999999999999999888 4688888888765 3689999999
Q ss_pred ccceEEEE-eCCeEEEEEcCC
Q 005108 681 IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
++|+++++ ++|+++.+..+.
T Consensus 108 ~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 108 GIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 99999888 599998875433
No 386
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.65 E-value=4.7e-07 Score=92.55 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=100.2
Q ss_pred HHHHHHHHcCC---HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc-----------HHHHHHH
Q 005108 391 CRVEALLKLHQ---LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR-----------FENAVTA 456 (714)
Q Consensus 391 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~ 456 (714)
..|..++..+. +.+|+.+|+++++++|++ +.+|..++.+|..... ...|+..
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~--------------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEF--------------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35666655443 578999999999999998 6666666666643211 1112221
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
..++..+|.++.++..+ +..+...|++++|+..+++++.++| +...|..+|.++...|++++|++.
T Consensus 267 -~~a~~~~~~~a~~~~al------------al~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 267 -IVTLPELNNLSIIYQIK------------AVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp -HHTCGGGTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HHhcccCCcCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 12346778888888766 7778888999999999999999997 577888999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 005108 537 SNQALLIQPNYTK 549 (714)
Q Consensus 537 ~~~al~~~p~~~~ 549 (714)
|++|+.++|....
T Consensus 333 ~~~AlrL~P~~~t 345 (372)
T 3ly7_A 333 YLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHSCSHHH
T ss_pred HHHHHhcCCCcCh
Confidence 9999999998753
No 387
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=98.60 E-value=6.4e-08 Score=91.24 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=73.4
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.|| +.||++|....|.+.++..++. ++.++.|++|. ..++++.|+|
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 110 (187)
T 1we0_A 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV 110 (187)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence 468999999 9999999999999999998885 68999998874 4567889999
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 111 ~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred CcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9 99999888 999999998875 578888888764
No 388
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.60 E-value=5e-08 Score=89.49 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=67.7
Q ss_pred CCc-eEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEecc---------------------cCcchhhhCCccc-
Q 005108 628 PGV-SVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDID---------------------ESPGVAHAENVRI- 681 (714)
Q Consensus 628 ~~~-~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d---------------------~~~~l~~~~~v~~- 681 (714)
.+. +++.|| +.||++|....|.+.++..++. ++.++.|++| ...++++.|+|.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 345 899999 9999999999999999999985 4899999887 4667899999999
Q ss_pred ---cceEEEE-eCCeEEEEEcCC--CHHHHHHHH
Q 005108 682 ---VPTFKIY-KNGSRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 682 ---~Pt~~~~-~~G~~~~~~~g~--~~~~l~~~~ 709 (714)
+|+++++ ++|+++....|. ..+.+++.+
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence 9988777 899999999993 333344333
No 389
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=6.5e-07 Score=75.18 Aligned_cols=84 Identities=10% Similarity=-0.086 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-------PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++.-.+.+|..+++.|+|+.|+.+|++|++.. +....++..+|.++.++|++++|+.+++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556778888888888888888888888752 34567888888888888888888888888888888888887
Q ss_pred HHHHHHHHHhh
Q 005108 586 ESLFHAQVSLK 596 (714)
Q Consensus 586 ~~L~~~~~~l~ 596 (714)
..+......+.
T Consensus 84 ~n~~~~~~~~~ 94 (104)
T 2v5f_A 84 GNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 77765554443
No 390
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=98.58 E-value=3.8e-08 Score=88.49 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=68.5
Q ss_pred hhhccCCCceEEEeecCCCccccccc------hHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE-eC-C
Q 005108 622 RAAVSLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY-KN-G 691 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~~-G 691 (714)
..+....++++|+|+++||..|+.+. |.+.++..+ ++.++++|++. ...+++.|+|.++|+++|+ .+ |
T Consensus 36 ~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G 113 (153)
T 2dlx_A 36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113 (153)
T ss_dssp HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC
T ss_pred HHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCC
Confidence 33444577999999999999999985 444444332 67888999975 3458899999999999998 55 8
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+++.++.|.+.+++...|+++
T Consensus 114 ~~l~~~~g~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 114 QKLVEWHQLDVSSFLDQVTGF 134 (153)
T ss_dssp CCCEEESSCCHHHHHHHHHHH
T ss_pred cEeeecCCCCHHHHHHHHHHH
Confidence 888887666888888777654
No 391
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=98.58 E-value=6.3e-08 Score=89.82 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=66.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-------c----Ccchh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-------E----SPGVA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-------~----~~~l~-------------------- 674 (714)
.+++++.||++||++|+ ..|.+.++..++. ++.++.|+++ + ..+.+
T Consensus 32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 110 (171)
T 3cmi_A 32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGN 110 (171)
T ss_dssp TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCcc
Confidence 46899999999999999 9999999999885 4889988764 1 01111
Q ss_pred ----------hhCCccccc------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----------HAENVRIVP------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----------~~~~v~~~P------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|+|.++| +++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 111 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (171)
T 3cmi_A 111 EDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166 (171)
T ss_dssp BCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHH
T ss_pred chHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 247899999 65555 999999999997 888898888775
No 392
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.56 E-value=3.9e-07 Score=97.24 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=86.7
Q ss_pred HhHHhhCcCHHHHHHHHHHhhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KA 550 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 550 (714)
.......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44445678999999999999984 4555 577889999999999999999999999974 45554 66
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRE-----LPDDNEIAESLF 589 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~L~ 589 (714)
+++||.+|..+|++++|+.+|++|+++ .|+++.+.+...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 899999999999999999999999875 588888776544
No 393
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.56 E-value=7.4e-08 Score=91.49 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=73.1
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.|| +.||++|....|.+.++..++. ++.++.|++|. ...+++.|+|
T Consensus 45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 124 (195)
T 2bmx_A 45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV 124 (195)
T ss_dssp TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence 458999999 9999999999999999998885 58999998874 3457889999
Q ss_pred c-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 125 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9 99998888 899999998875 578888888775
No 394
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=98.56 E-value=1.1e-07 Score=90.47 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.++++++|| +.||++|....|.+.++..++. ++.++.|++|. ..++++.
T Consensus 33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (198)
T 1zof_A 33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD 112 (198)
T ss_dssp SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence 458999999 9999999999999999998874 58899998874 3467889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 113 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp TTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred hCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999 99988777 899999998875 467888887764
No 395
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=98.54 E-value=8.8e-08 Score=90.54 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=68.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~-------------------- 674 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|+ .++ .+
T Consensus 48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~ 127 (190)
T 2vup_A 48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 127 (190)
T ss_dssp TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence 4689999999999999999999999999886 49999998762 111 11
Q ss_pred ----------hhCCccccc------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----------HAENVRIVP------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----------~~~~v~~~P------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|+|.++| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 183 (190)
T 2vup_A 128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183 (190)
T ss_dssp BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 125888999 55555 999999999998 899999888764
No 396
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=5.9e-07 Score=79.45 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc---CHHHHHHHHHHhhccC-C-CCHHHHHHHHHH
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE---RFTEACQAYGEGLRFD-P-SNSVLYCNRAAC 523 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 523 (714)
....+.+.|.+.++.++.+.+..+.+ |+++.+.+ ++++++..+++.++.+ | .+.++++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~y------------a~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEY------------AWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHH------------HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 34567778888888888888888877 99999988 7779999999999998 7 568999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|+++|+|++|+++++++++++|++.++...+-.+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988776554443
No 397
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.52 E-value=7.7e-07 Score=74.69 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLA-------PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
++..++.+|..++..++|..|+..|++|++.. +....++..+|.+++++|++++|+.+++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 56788999999999999999999999999863 34588999999999999999999999999999999999888
Q ss_pred HHHH
Q 005108 314 QRLG 317 (714)
Q Consensus 314 ~~la 317 (714)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 398
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=98.51 E-value=2.9e-07 Score=86.67 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc--------Ccchh-----------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE--------SPGVA----------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~--------~~~l~----------------------- 674 (714)
.++++|+||++||++|....|.|.++..++. ++.++.|.+|+ .+++.
T Consensus 46 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (187)
T 3dwv_A 46 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 125 (187)
T ss_dssp TSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-
T ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCcc
Confidence 4689999999999999999999999999986 48899888762 11110
Q ss_pred -------------hhCCccccc---eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 -------------HAENVRIVP---TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 -------------~~~~v~~~P---t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..+++..+| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~l 181 (187)
T 3dwv_A 126 AHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181 (187)
T ss_dssp CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 223455677 76666 999999999998 999999998875
No 399
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=98.50 E-value=1.1e-07 Score=87.75 Aligned_cols=85 Identities=7% Similarity=0.045 Sum_probs=65.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc-ch----hh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP-GV----AH------------------ 675 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~-~l----~~------------------ 675 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. .+ .+ .+
T Consensus 31 gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 110 (169)
T 2v1m_A 31 GHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSD 110 (169)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTT
T ss_pred CCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCcc
Confidence 4689999999999999999999999999886 48999998753 10 11 01
Q ss_pred ---hC--------C-----ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 676 ---AE--------N-----VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 ---~~--------~-----v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.| + |..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 111 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 165 (169)
T 2v1m_A 111 ADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165 (169)
T ss_dssp SCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 11 4 4456876666 999999999998 888888888764
No 400
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.50 E-value=9.9e-07 Score=94.28 Aligned_cols=104 Identities=7% Similarity=0.016 Sum_probs=87.7
Q ss_pred HhHHhhCcCHHHHHHHHHHhhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KA 550 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 550 (714)
...+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44567889999999999999975 3444 578899999999999999999999999974 45554 66
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRE-----LPDDNEIAESLFH 590 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~L~~ 590 (714)
+++||.+|..+|++++|+.+|++|+++ .|+++.+.+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 899999999999999999999999875 6888887765443
No 401
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=98.50 E-value=1.8e-07 Score=85.62 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=68.4
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
++++.|| +.||++|....|.+.++..++. ++.++.|++|. ...+++.|+|.
T Consensus 38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~ 117 (160)
T 1xvw_A 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ 117 (160)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence 7899998 9999999999999999999984 58899998864 56789999999
Q ss_pred -ccc--eEE-EEeCCeEEEEEcCC-C----HHHHHHHHhhh
Q 005108 681 -IVP--TFK-IYKNGSRMKEIVCP-S----RDMLEHSVRHY 712 (714)
Q Consensus 681 -~~P--t~~-~~~~G~~~~~~~g~-~----~~~l~~~~~~~ 712 (714)
++| +++ |.++|+++.+..|. + .+++...|+++
T Consensus 118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 554 44999999999887 2 35566666654
No 402
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=98.48 E-value=1.3e-07 Score=88.01 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------------------- 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------------------- 667 (714)
..++|+.|+..||++|+.+.|.+.++..+++++.++.+++
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~ 101 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANET 101 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHH
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHH
Confidence 4578999999999999999999999999998877776663
Q ss_pred -----------------------------ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 -----------------------------DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 -----------------------------d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+...++++++||.++|||+| ||+ .+.|. +.+.|++.|++.
T Consensus 102 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 102 GVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 33445678899999999987 885 45688 999999998764
No 403
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=98.48 E-value=1.3e-07 Score=74.05 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=57.3
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
++.|+++||++|+.+.+.++++ ++.|..+|+++.+++.. .+++..+|++++ +|+. +.|++.++|+++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHHH
Confidence 5779999999999999998865 47788899998877665 899999999874 8864 568888999888
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
No 404
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.48 E-value=1.3e-05 Score=87.61 Aligned_cols=174 Identities=12% Similarity=-0.018 Sum_probs=124.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHhhccccCCCCCCCchhhhhh
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ---------LEDAESSLSNIPKIEPSTVSSSQTRFF 428 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~~~~ 428 (714)
...+.+.|++++|++.|+++.+.+-..+...|..+..++...+. +++|.++|+++....-..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P--------- 103 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP--------- 103 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC---------
Confidence 35578999999999999999998877677778777777765543 677888888776554321
Q ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 429 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
+..+|..+...|.+.|++++|+++|+++.+. .|+ ...|..+ -..|.+.|++++|.++|+++
T Consensus 104 ----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~l------------I~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 104 ----NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPA------------LFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHH------------HHHHHHCCCHHHHHHHHHHH
Confidence 1567888888888888888888888887754 343 3334333 56677888888888888887
Q ss_pred hccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 005108 507 LRFD-PSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--QPNYTKALLRRAASN 558 (714)
Q Consensus 507 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 558 (714)
.+.. .-+...|..+..+|.+.|++++|.++|+++.+. .|+ ...+..+-..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 7642 226677888888888888888888888887663 454 33443333333
No 405
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=98.48 E-value=5.4e-08 Score=77.62 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=57.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
++.|+++||++|+.+.+.|+++ ++.|..+|+++.+++.+ .+++.++|++ +.+|+. +.|++.++|++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~~ 72 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINRL 72 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGGG
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHHH
Confidence 6789999999999999998763 46788999998776654 4899999998 358874 457888889888
Q ss_pred Hhhhc
Q 005108 709 VRHYS 713 (714)
Q Consensus 709 ~~~~~ 713 (714)
|+++.
T Consensus 73 l~~~~ 77 (81)
T 1h75_A 73 HPAPH 77 (81)
T ss_dssp SCCC-
T ss_pred Hhccc
Confidence 87653
No 406
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=89.04 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=67.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hhh-------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VAH------------------- 675 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~~------------------- 675 (714)
.+++++.||++||++|....|.|.++..++. ++.++.|++|+ .++ .++
T Consensus 49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~ 128 (181)
T 2p31_A 49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG 128 (181)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCcc
Confidence 4689999999999999999999999999886 38999998753 111 111
Q ss_pred -----hCCccccc-------e-EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 676 -----AENVRIVP-------T-FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 -----~~~v~~~P-------t-~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.|.+..+| + ++|.++|+++.++.|. +.++|++.|+++
T Consensus 129 ~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 179 (181)
T 2p31_A 129 AHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179 (181)
T ss_dssp SCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred chhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 23467789 5 4555999999999998 999999999875
No 407
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.47 E-value=8.9e-06 Score=88.87 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhcCC-CcHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLA-PRNAAFRSNRAAALTGLGR---------IGEAVKECEEAVRLDP-NYWRA 312 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~a 312 (714)
.+...-..+.+.|++++|+++|+++.+.. .-+...|..+..++...+. +++|.+.|+++.+..- -+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666788899999999999999998863 2366777777777765543 7899999999877542 25779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
|..+...|.+.|++++|+++|+++... ..|+.. .+..+...+.+.|++++|.+.|+++.+.+-..+...|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999998762 333321 233344558899999999999999999988778889999
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCC
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIE 416 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~ 416 (714)
+..+|.+.|++++|.++|+++.+..
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987644
No 408
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=98.44 E-value=2.5e-07 Score=88.62 Aligned_cols=85 Identities=8% Similarity=-0.009 Sum_probs=65.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C-cchh---h------hCC----------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S-PGVA---H------AEN---------- 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~-~~l~---~------~~~---------- 678 (714)
.++++|.||++||++|+...|.|+++..+|. ++.++.|++++ . +++. + .++
T Consensus 47 Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d 126 (208)
T 2f8a_A 47 GKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCE 126 (208)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEee
Confidence 4689999999999999999999999999885 48899998751 1 1111 1 222
Q ss_pred -------------------------------------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 -------------------------------------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 -------------------------------------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+.+++ ++|+++.++.|. +.++|++.|+++
T Consensus 127 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 127 VNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred cCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3445866555 999999999998 888898888775
No 409
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=98.42 E-value=1.7e-07 Score=86.74 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=67.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc-c---hhh-hC----------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP-G---VAH-AE---------------- 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~-~---l~~-~~---------------- 677 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. .+ . .++ .+
T Consensus 32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (170)
T 2p5q_A 32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGEN 111 (170)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCc
Confidence 4689999999999999999999999999886 48999998752 11 1 112 21
Q ss_pred -------------Cc--cccc---eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 -------------NV--RIVP---TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 -------------~v--~~~P---t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+| ..+| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (170)
T 2p5q_A 112 ASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166 (170)
T ss_dssp BCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHH
Confidence 45 6789 66555 999999999998 888899988875
No 410
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.42 E-value=2.1e-06 Score=91.51 Aligned_cols=99 Identities=7% Similarity=0.007 Sum_probs=83.5
Q ss_pred HHHhCcHHHHHHHHHHHhc-----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----CCCC
Q 005108 444 EMALGRFENAVTAAEKAGQ-----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----DPSN 513 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~ 513 (714)
....|+|++|+.+++++++ +.|+++.....++++ |.+|..+|+|++|+.+|++++++ .|++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nL---------a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQA---------MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHH---------HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456889999999999986 578888877766554 99999999999999999999975 3444
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005108 514 ---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYTKAL 551 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 551 (714)
...++++|.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 678999999999999999999999999984 67877544
No 411
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=98.41 E-value=5.8e-07 Score=83.56 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCcccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVRIV-- 682 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~~~-- 682 (714)
.+++++.||+.| |++|....|.|.++..+ .++.|+.|++|. ...+++.|+|..+
T Consensus 44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 122 (175)
T 1xvq_A 44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADG 122 (175)
T ss_dssp TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccccc
Confidence 458999999999 99999999999999988 889999998872 3567889999988
Q ss_pred -------ceEEEE-eCCeEEEEEcC--C-CHHHHHHHHhh
Q 005108 683 -------PTFKIY-KNGSRMKEIVC--P-SRDMLEHSVRH 711 (714)
Q Consensus 683 -------Pt~~~~-~~G~~~~~~~g--~-~~~~l~~~~~~ 711 (714)
|+++++ ++|+++....| . ....+++.|+.
T Consensus 123 ~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 123 PMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp TTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred ccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 776666 89999999874 2 33345555544
No 412
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=98.41 E-value=5.2e-07 Score=85.33 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||++|....|.|.++..++ .++.++.|++|. ..++++.
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 110 (192)
T 2h01_A 31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS 110 (192)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence 458999999 999999999999999999888 568999988763 2457889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++....|. +.+++.+.|+.+
T Consensus 111 ~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 111 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred hCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999 99999888 999999998874 467777777654
No 413
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=98.39 E-value=2.4e-07 Score=86.95 Aligned_cols=85 Identities=20% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc------------------------chh
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP------------------------GVA 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~------------------------~l~ 674 (714)
.+++++.||++||++|....|.|.++..++. ++.++.|++|. .+ ..+
T Consensus 47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 126 (183)
T 2obi_A 47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDA 126 (183)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTS
T ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcch
Confidence 4689999999999999999999999999886 48899998752 10 111
Q ss_pred h-hC----------C-----ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 H-AE----------N-----VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~-~~----------~-----v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
. .| + |..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 127 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp CHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred hHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 12 3 3446987666 999999999998 888898888764
No 414
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.39 E-value=1.7e-06 Score=92.44 Aligned_cols=113 Identities=11% Similarity=0.021 Sum_probs=89.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQI-----DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---- 509 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---- 509 (714)
....-+..+|++++|++.+++++++ .|+++.....++++ |.+|..+|+|++|+.++++++++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L---------~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA---------MDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHH---------HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHH---------HHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 3344566789999999999999864 57788776666554 99999999999999999999975
Q ss_pred -CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 005108 510 -DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYTKA---LLRRAASNSK 560 (714)
Q Consensus 510 -~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 560 (714)
.|++ ...++++|.+|..+|++++|+.+|++|+++ .|+++.+ +.+|+.+...
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444 678999999999999999999999999984 6777644 3445554433
No 415
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=98.38 E-value=5.6e-07 Score=87.03 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=72.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.++.|++|. ..++++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 368999999 999999999999999999988 578999888763 3457889
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++.+..|. +.+++.+.|+.+
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999 99999888 999999988775 457788777754
No 416
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=98.37 E-value=1.7e-07 Score=79.02 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=62.4
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEEeCCe
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++..+... .++.|+++||++|+.+.+.|+++...+++ |..+|++.. .++++.+++.++|++ |.+|+
T Consensus 4 ~~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~ 77 (105)
T 1kte_A 4 FVNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKE 77 (105)
T ss_dssp HHHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTE
T ss_pred HHHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCE
Confidence 445555443 46779999999999999999988776665 566777765 357888999999997 45898
Q ss_pred EEEEE---cCC-CHHHHHHHHhhhc
Q 005108 693 RMKEI---VCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~---~g~-~~~~l~~~~~~~~ 713 (714)
.+..+ .+. ...+|.+.|+..+
T Consensus 78 ~i~g~~~~~~~~~~g~L~~~l~~~g 102 (105)
T 1kte_A 78 CIGGCTDLESMHKRGELLTRLQQVG 102 (105)
T ss_dssp EEESHHHHHHHHHHTHHHHHHHHHT
T ss_pred EEeccHHHHHHHHCCcHHHHHHHcC
Confidence 76532 122 3466777776543
No 417
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.37 E-value=7.2e-07 Score=93.58 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=77.3
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc--cCcchhhhCCccc--cceEEEEeCCe
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID--ESPGVAHAENVRI--VPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d--~~~~l~~~~~v~~--~Pt~~~~~~G~ 692 (714)
+.+...+.. ...+++.|+++||++|+.+.|.+++++.++.+ +.|+.||++ +...+++.|||.. +|+++++.+|+
T Consensus 125 ~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 125 QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC
Confidence 334444433 34668999999999999999999999999975 999999999 6889999999998 99999999877
Q ss_pred EEEEEc---CC-CHHHHHHHHhhh
Q 005108 693 RMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
...++. |. +.+.|+++++.+
T Consensus 205 ~~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 205 EMTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp -CCEECCSSCCCCHHHHHHHHHHH
T ss_pred cccccCCCccccCHHHHHHHHHHH
Confidence 666665 55 999999999875
No 418
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=98.36 E-value=3.7e-07 Score=87.09 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.|+.|++|. ..++++.
T Consensus 36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 115 (202)
T 1uul_A 36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 115 (202)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence 458999999 999999999999999999988 469999998864 3467889
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+.+
T Consensus 116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 9999 99988777 999999988775 458888877764
No 419
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=98.34 E-value=6.1e-07 Score=86.22 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=70.9
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....|.|.++..+| .++.++.|++|. ..+++++
T Consensus 52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 131 (213)
T 2i81_A 52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD 131 (213)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence 358999999 999999999999999999888 468888888764 3457889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+.+
T Consensus 132 ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 132 YNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp TTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999 89987777 999999998764 478888887764
No 420
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.33 E-value=4.2e-06 Score=71.15 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=89.2
Q ss_pred cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWER---SVEDSNQALLIQ-P-NYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
.....+.+.|.+.+..++....+.+++|+++.+..+..+ ++..++..++.+ | ..-+.+|.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445667777888888778889999999999999887666 999999998876 5 45689999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+++.+++..|+|..+......+...+.+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998887777666543
No 421
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=98.33 E-value=1.2e-06 Score=80.73 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.||+.| |++|+...|.+.++..++.++.++.|++|. ..++++.|+|..
T Consensus 44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~ 123 (167)
T 2jsy_A 44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKE 123 (167)
T ss_dssp TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTT
T ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcccc
Confidence 458999999999 999999999999999988779999988773 235677899987
Q ss_pred ----cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 124 ~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 124 LRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred CCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4987766 899999998764 347777777764
No 422
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=98.31 E-value=3.2e-07 Score=88.46 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
..++++.||++||++|+++.|.++++... ++.++.+.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~ 163 (216)
T 1eej_A 86 EKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC 163 (216)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHH
Confidence 45789999999999999999999998763 44444332
Q ss_pred ---cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 667 ---IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 667 ---~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++..++++.+||.++||+ ++.||+ .+.|. +.++|++.|++.
T Consensus 164 ~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 164 DVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp SCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 2334567889999999998 567885 45688 899999988764
No 423
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=98.31 E-value=8.2e-07 Score=84.31 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=70.8
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||++|....|.|.++..++ .++.++.|++|. ..++++.
T Consensus 34 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 113 (197)
T 1qmv_A 34 GKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED 113 (197)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHHHHHH
Confidence 458999999 999999999999999999888 368999998873 2357889
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.++.|. +.+++.+.|+.+
T Consensus 114 ~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 9999 89987777 999999998875 457777777654
No 424
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.30 E-value=4.6e-07 Score=84.68 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=62.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc-------Cc----chhhh-CCc--------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE-------SP----GVAHA-ENV-------------- 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~-------~~----~l~~~-~~v-------------- 679 (714)
+++++|+||++||++|....|.|.++..+|.+ +.++.|.++. .+ +.++. +++
T Consensus 38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 117 (180)
T 3kij_A 38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSE 117 (180)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCcc
Confidence 45899999999999999999999999999864 8888887653 11 12223 221
Q ss_pred ------------cccce-----EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 680 ------------RIVPT-----FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 680 ------------~~~Pt-----~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
..+|+ ++|.++|+++.++.|. +.+.|+..|++
T Consensus 118 ~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ 167 (180)
T 3kij_A 118 GEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAA 167 (180)
T ss_dssp CCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHH
T ss_pred ccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence 12665 5666999999999998 77776666654
No 425
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=98.28 E-value=1.8e-07 Score=80.06 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=62.0
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-------chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-------GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-------~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.++..+.. ..++.|+++||+.|+.+.+.|+++...++. |..+|+++.+ ++++.++++++|++++ +|
T Consensus 10 ~~~~~~i~~--~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g 83 (114)
T 2hze_A 10 EFVQQRLAN--NKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GK 83 (114)
T ss_dssp HHHHTTCCT--TCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TT
T ss_pred HHHHHHhcc--CCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CC
Confidence 444555543 357789999999999999998765433322 7888998875 7888999999998744 89
Q ss_pred eEEEEEc---CC-CHHHHHHHHhhh
Q 005108 692 SRMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
+.+..+. +. +..+|++.|+..
T Consensus 84 ~~igg~~~~~~~~~~~~L~~~L~~~ 108 (114)
T 2hze_A 84 TSIGGYSDLLEIDNMDALGDILSSI 108 (114)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCcHHHHHHHHCChHHHHHHHc
Confidence 8775432 22 335577777654
No 426
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.28 E-value=9.1e-07 Score=84.20 Aligned_cols=84 Identities=10% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEeccc----------------------------Ccch
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDIDE----------------------------SPGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d~----------------------------~~~l 673 (714)
.++++|.||++||++ |....|.|.++..++. ++.++.|++|. ...+
T Consensus 41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 120 (200)
T 2b7k_A 41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA 120 (200)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence 468999999999998 9999999999766552 68899888872 1246
Q ss_pred hhhCCcc-ccc---------------e-EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 674 AHAENVR-IVP---------------T-FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 674 ~~~~~v~-~~P---------------t-~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++.|+|. .+| + ++|.++|+++..+.|. +.+.+.+.|.+
T Consensus 121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~ 176 (200)
T 2b7k_A 121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE 176 (200)
T ss_dssp HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 7788887 454 4 4555999999999887 76666666654
No 427
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=98.24 E-value=7.1e-07 Score=83.83 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=65.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----C-------cchhhh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----S-------PGVAHA------------------ 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----~-------~~l~~~------------------ 676 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. . .+.++.
T Consensus 49 Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 128 (185)
T 2gs3_A 49 GFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDA 128 (185)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTB
T ss_pred CCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChhh
Confidence 4689999999999999999999999999885 48899987652 0 011111
Q ss_pred ---C----------Cc-----cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 ---E----------NV-----RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 ---~----------~v-----~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
| ++ +.+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 129 ~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 129 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp CHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred hHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 1 32 235877666 999999999998 888888888764
No 428
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=98.23 E-value=5.5e-07 Score=86.36 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
..++++.|+++||++|+++.|.++++... ++.+..+.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~ 163 (211)
T 1t3b_A 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT 163 (211)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHH
Confidence 45789999999999999999999997653 45544332
Q ss_pred ---cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 667 ---IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 667 ---~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+++..++++.+||+++||+++ .||+ .+.|. +.++|+++|++..
T Consensus 164 ~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~~ 210 (211)
T 1t3b_A 164 PNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEETA 210 (211)
T ss_dssp SSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhcc
Confidence 223456788999999999988 8997 56788 9999999998753
No 429
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.22 E-value=1.8e-06 Score=80.08 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhCC----CcEEEEEeccc---Cc-------------------------chh
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRYP----SINFLKVDIDE---SP-------------------------GVA 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~~----~~~~~~vd~d~---~~-------------------------~l~ 674 (714)
.++++++||+.||+ +|....|.+.++..++. ++.++.|++|. .+ +++
T Consensus 33 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 112 (174)
T 1xzo_A 33 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI 112 (174)
T ss_dssp TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHH
Confidence 46899999999999 99999999999988774 38999998862 11 111
Q ss_pred hh----------------CCccccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 675 HA----------------ENVRIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~~----------------~~v~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
.. |++..+|+++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 170 (174)
T 1xzo_A 113 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA 170 (174)
T ss_dssp HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 11 346778976655 999999999997 378899888875
No 430
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.5e-07 Score=80.24 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=60.0
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---c----chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---P----GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~----~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+..++... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++++.+++..+|+++ .+|
T Consensus 18 ~~~~~~i~~~-~-vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G 88 (130)
T 2cq9_A 18 NQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 88 (130)
T ss_dssp HHHHHHHHHS-S-EEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETT
T ss_pred HHHHHHHcCC-c-EEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 4455555443 2 44499999999999999998874 34566777765 3 377889999999984 499
Q ss_pred eEEEE---EcCC-CHHHHHHHHhhhc
Q 005108 692 SRMKE---IVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~---~~g~-~~~~l~~~~~~~~ 713 (714)
+.+.. +.+. ...+|.++|+.++
T Consensus 89 ~~igg~~~l~~~~~~~~L~~~L~~~g 114 (130)
T 2cq9_A 89 TFIGGATDTHRLHKEGKLLPLVHQCY 114 (130)
T ss_dssp EEEEEHHHHHHHHHHTSSHHHHHHHS
T ss_pred EEEcChHHHHHHHHcCcHHHHHHHcC
Confidence 87765 2333 4456677776653
No 431
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=98.17 E-value=2.7e-06 Score=82.32 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.++++|.||+ .||++|....|.|.++..+|. ++.|+.|.+|. ...++..
T Consensus 69 Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 148 (222)
T 3ztl_A 69 GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKA 148 (222)
T ss_dssp TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHH
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHH
Confidence 4689999997 999999999999999999984 58999888773 2356789
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
|+|. .+|+++++ ++|+++....|. ..+++.+.|+.
T Consensus 149 ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 149 YGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp TTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred cCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999 89988777 999999988776 34555555554
No 432
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=98.10 E-value=6.5e-07 Score=79.93 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=59.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---c----chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---P----GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~----~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+...+... .++.|+++||++|+++.+.|+++. +.|..+|++.. + ++++.+++.++|+++ .+|
T Consensus 40 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G 110 (146)
T 2ht9_A 40 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 110 (146)
T ss_dssp HHHHHHHHHC--SEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred HHHHHHhcCC--CEEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECC
Confidence 4555555443 244499999999999999998874 34566777655 3 378889999999984 599
Q ss_pred eEEEEE---cCC-CHHHHHHHHhhhc
Q 005108 692 SRMKEI---VCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~---~g~-~~~~l~~~~~~~~ 713 (714)
+.+... .+. ...+|+.+|+..+
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~g 136 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQCY 136 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHTT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHcC
Confidence 876542 233 3445677776543
No 433
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=98.06 E-value=7.1e-06 Score=75.05 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=67.3
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~-- 681 (714)
.+++++.||+ .||+.|....|.+.++..++. ++.++.|.+|. ..++++.|+|..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 3478999998 999999999999999998884 58888888763 445788999987
Q ss_pred ----------cceEEEE-eCCeEEEEEcCC-C---HHHHHHHHhhh
Q 005108 682 ----------VPTFKIY-KNGSRMKEIVCP-S---RDMLEHSVRHY 712 (714)
Q Consensus 682 ----------~Pt~~~~-~~G~~~~~~~g~-~---~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++..+.+. . .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 9998888 999999888665 2 35555555543
No 434
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=98.05 E-value=5.7e-06 Score=66.98 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=59.1
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhh-----CCccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA-----ENVRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
..|+.|..+||+.|.+....|++ .++.|..+|++++++..+. .|.+.+|+++ +.||+. ++||+.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~-----~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~---l~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTA-----NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGST---LTNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCE---EESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHh-----cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEE---EeCCCHHH
Confidence 35778999999999999888866 3577889999987765442 3789999865 478875 46899999
Q ss_pred HHHHHhhhc
Q 005108 705 LEHSVRHYS 713 (714)
Q Consensus 705 l~~~~~~~~ 713 (714)
|+..|.+++
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998864
No 435
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=98.05 E-value=7.8e-06 Score=78.80 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.++.|.+|. ...+++.
T Consensus 56 Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 135 (221)
T 2c0d_A 56 QKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKN 135 (221)
T ss_dssp TCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHH
Confidence 358999999 999999999999999998887 468888777653 1235678
Q ss_pred CCc-----cccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENV-----RIVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v-----~~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+| ..+|+++++ ++|+++...+|. +.++|.+.|+.+
T Consensus 136 ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 136 YNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp TTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 898 479988877 899999988763 567888877764
No 436
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=98.04 E-value=6.4e-06 Score=75.05 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=57.4
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccccc--
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIVP-- 683 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~P-- 683 (714)
++++.|| +.||+.|....|.|.++..++. + .++.|.+|. ..++++.|+|..+|
T Consensus 37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 6788886 8999999999999999988875 4 677776643 44578899999999
Q ss_pred -----eEEEEeCCeEEEEEcCC
Q 005108 684 -----TFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 684 -----t~~~~~~G~~~~~~~g~ 700 (714)
+++| ++|+++....|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 6777 999999999887
No 437
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=98.03 E-value=5.4e-06 Score=75.36 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~--- 680 (714)
.+.+++.|| +.||++|....|.+.++..++. ++.++-|.+|. ..+++++|||.
T Consensus 30 Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~ 109 (157)
T 4g2e_A 30 GKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEF 109 (157)
T ss_dssp TSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEC
T ss_pred CCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcccc
Confidence 457888998 9999999999999988888774 57787777664 34567888884
Q ss_pred --------ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 681 --------IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
..|+++++ ++|+++...++. +.+++.+.|+.+
T Consensus 110 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 110 PALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp TTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred ccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 46766666 999998876543 567888888765
No 438
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=98.01 E-value=5.4e-06 Score=81.16 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=64.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------------------- 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------------------- 667 (714)
..++++.|+.+||+.|+++.+.+.++... .++.|..+.+
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~ 175 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA 175 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence 34689999999999999999999987765 3566655443
Q ss_pred ----------ccCcchhhhCCccccceEEEEe-CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 ----------DESPGVAHAENVRIVPTFKIYK-NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 ----------d~~~~l~~~~~v~~~Pt~~~~~-~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++..++++.+||.++||+++.. +|+. ..+.|. +.++|++.|+++
T Consensus 176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHH
Confidence 1234467899999999999985 6864 677898 999999988764
No 439
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=97.99 E-value=4.1e-06 Score=68.39 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=55.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----cC----cchhhhCCccccceEEEEeCCeEEEEEcCCC
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----ES----PGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----~~----~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~ 701 (714)
.++.|+.+||+.|+++.+.|+++. +.|-.+|++ +. +++.+.+++..+|++++ +|+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 367789999999999999998874 334456665 33 66778889999999887 8853 56889
Q ss_pred HHHHHHHHh
Q 005108 702 RDMLEHSVR 710 (714)
Q Consensus 702 ~~~l~~~~~ 710 (714)
.++|+++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999885
No 440
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=97.97 E-value=4.7e-06 Score=78.64 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc-------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE------------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~------------------------------------- 669 (714)
..++|+.|+..||++|+.+.|.+.++..++++ +.|..+.+.-
T Consensus 25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~ 104 (192)
T 3h93_A 25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKK 104 (192)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcC
Confidence 45789999999999999999999999999985 6666554420
Q ss_pred ------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 670 ------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 670 ------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
...++..+||.++|||+| ||+.+....|. +.+.|.+.|+.+
T Consensus 105 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~l 182 (192)
T 3h93_A 105 LATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADYL 182 (192)
T ss_dssp CCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHHH
Confidence 112356789999999987 99987766677 888888887764
No 441
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.95 E-value=0.00013 Score=61.96 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHH---HHHHHHHhhccC-C-CCHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTE---ACQAYGEGLRFD-P-SNSVLYCNRAA 522 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 522 (714)
.....+...|.+.+..++...+..+.+ |+++.+..+..+ ++.+++..++.+ | ..-+.++.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~y------------Aw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEY------------AWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHH------------HHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344566677777777777788887766 899998887766 999999999987 5 46789999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.++++|+|++|+.+++.+|++.|++.++......+-
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998876555443
No 442
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=97.94 E-value=5.6e-06 Score=80.84 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.|.++..++. ++.++.|++|. ..+++..|+|.
T Consensus 36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~ 115 (249)
T 3a2v_A 36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL 115 (249)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCC
T ss_pred EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCc
Confidence 56678999999999999999999988885 68899888763 34578899998
Q ss_pred -------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++..++|. +.++|...|+.+
T Consensus 116 ~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 116 HAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp CTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 89987777 899999988765 578888887764
No 443
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=97.92 E-value=1.5e-05 Score=76.26 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=67.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||++|....|.|.++..++ .++.++.|.+|. ..++++.
T Consensus 48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 127 (211)
T 2pn8_A 48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD 127 (211)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence 458999999 999999999999999998887 458888777653 1235678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++...+|. +.+++.+.|+.+
T Consensus 128 ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 128 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8985 69988877 899999988764 567777777654
No 444
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=97.91 E-value=3e-05 Score=74.17 Aligned_cols=84 Identities=6% Similarity=-0.088 Sum_probs=62.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C----cchhh------hCCcc--------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S----PGVAH------AENVR-------- 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~----~~l~~------~~~v~-------- 680 (714)
.++++|.||++||++|+ ..|.|+++..+|. ++.++-|.+++ . .+.++ .|++.
T Consensus 56 GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~d 134 (215)
T 2i3y_A 56 GKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGD 134 (215)
T ss_dssp TSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCC
T ss_pred CCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeeec
Confidence 45899999999999999 8999999999885 48888887542 1 11122 33220
Q ss_pred --------------------------------------cc---ceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 681 --------------------------------------IV---PTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------------------------------------~~---Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ |+.+++ ++|+++.++.|. +.++|+..|+++
T Consensus 135 ~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~l 209 (215)
T 2i3y_A 135 VNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAY 209 (215)
T ss_dssp SSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 11 555555 999999999988 888999888764
No 445
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=97.90 E-value=9.4e-06 Score=76.75 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=36.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d 668 (714)
..++++.|++.||+.|+.+.|.+.++.+++++ +.|..++++
T Consensus 25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 45789999999999999999999999999985 888888875
No 446
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=97.89 E-value=2.6e-05 Score=71.43 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...+++.|+|..
T Consensus 43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 122 (165)
T 1q98_A 43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQT 122 (165)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECS
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceecc
Confidence 457899999 799999999999999999888668887776553 234667788864
Q ss_pred -------cceEEEE-eCCeEEEEEcCC
Q 005108 682 -------VPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 682 -------~Pt~~~~-~~G~~~~~~~g~ 700 (714)
+|+++++ ++|+++....|.
T Consensus 123 ~~~~g~~~p~~~liD~~G~i~~~~~~~ 149 (165)
T 1q98_A 123 GPLAGLTSRAVIVLDEQNNVLHSQLVE 149 (165)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred cccCCccceeEEEEcCCCEEEEEEeCC
Confidence 5988777 899999998763
No 447
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=97.88 E-value=1.7e-05 Score=73.05 Aligned_cols=85 Identities=7% Similarity=-0.071 Sum_probs=66.0
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhCC----CcEEEEEeccc-------------------------------Cc
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRYP----SINFLKVDIDE-------------------------------SP 671 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~~----~~~~~~vd~d~-------------------------------~~ 671 (714)
.+++++.||+.||+ .|....+.+.++..++. ++.++.|.+|. ..
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 46899999999998 59999999999988873 48888777651 11
Q ss_pred chhhhCC---------ccccceEEEE-eCCeEEEEEcCC--CHHHHHHHHhhh
Q 005108 672 GVAHAEN---------VRIVPTFKIY-KNGSRMKEIVCP--SRDMLEHSVRHY 712 (714)
Q Consensus 672 ~l~~~~~---------v~~~Pt~~~~-~~G~~~~~~~g~--~~~~l~~~~~~~ 712 (714)
+++++|| +...|+++++ ++|+++..+.|. +.++|...|++.
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 3455555 4566776666 999999988887 889999988875
No 448
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.85 E-value=1.5e-05 Score=72.96 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..+.+++.|| +.||++|....|.+.++..++. ++.++-|..|. ..+++++|||.
T Consensus 32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~ 111 (164)
T 4gqc_A 32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE 111 (164)
T ss_dssp TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCccc
Confidence 3456777777 9999999999998888888774 58888887663 44578899985
Q ss_pred --------ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 681 --------IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
..|+++++ ++|+++...++. +.+++.+.|+++
T Consensus 112 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 112 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred ccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36766555 999999876643 567777777665
No 449
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=97.85 E-value=3e-05 Score=70.85 Aligned_cols=84 Identities=6% Similarity=-0.029 Sum_probs=65.5
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
.+++++.||+ .||+.|....|.+.++..++.++.++.|.+|. ...+++.|+|.
T Consensus 42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 121 (163)
T 1psq_A 42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINE 121 (163)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTT
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcccc
Confidence 4588999995 99999999999999999888668887776653 23466778887
Q ss_pred -c--cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhh
Q 005108 681 -I--VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRH 711 (714)
Q Consensus 681 -~--~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~ 711 (714)
+ .|+++++ ++|+++....|. +.+++.+.|++
T Consensus 122 ~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 122 WHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 3888777 899999998764 33677777765
No 450
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=97.85 E-value=2.9e-05 Score=72.67 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=66.7
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.||+ .||+.|....|.|.++..++. ++.++.|.+|. ...+++.|+|
T Consensus 30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv 109 (186)
T 1n8j_A 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 109 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence 3588999995 899999999999999988774 57887777653 2235678888
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++....|. +.++|.+.|+.+
T Consensus 110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7 47988777 899999988764 477888877764
No 451
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.84 E-value=0.00041 Score=59.83 Aligned_cols=99 Identities=12% Similarity=-0.044 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPN-YTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
...+.|++-+. ......+.+++|+++.+..+ ..+++..++..++..|. .-+.+|.+|..++++|+|++|.++.+.
T Consensus 24 ~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 24 ILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444443322 34578999999999998775 55799999999998884 568899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 574 LRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 574 al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++..|+|..+......+...+.+
T Consensus 103 lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 103 LFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999998877777666544
No 452
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=97.82 E-value=3.6e-05 Score=73.20 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=34.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d 668 (714)
.++++|.||++||++| ...|.|.++..+|. ++.++-|.++
T Consensus 38 GKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d 79 (207)
T 2r37_A 38 GKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN 79 (207)
T ss_dssp TSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence 4589999999999999 67899999999885 4888888754
No 453
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=97.80 E-value=3.6e-05 Score=71.57 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=64.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~-- 681 (714)
.+.+++.|| +.||+.|....|.|.++..++. ++.++.|.+|. ..++++.|+|..
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~ 130 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK 130 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence 347788888 9999999999999999998884 48888887664 445688899864
Q ss_pred ----------cceEEEE-eCCeEEEEEcCC----CHHHHHHHHhhh
Q 005108 682 ----------VPTFKIY-KNGSRMKEIVCP----SRDMLEHSVRHY 712 (714)
Q Consensus 682 ----------~Pt~~~~-~~G~~~~~~~g~----~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++..+.+. ..+++.+.|+.+
T Consensus 131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH 176 (179)
T ss_dssp CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 5877777 899999888654 335555555543
No 454
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.80 E-value=0.00031 Score=59.80 Aligned_cols=99 Identities=12% Similarity=-0.059 Sum_probs=80.9
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPN-YTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
...+.|++-+ ...-.+.+.+++|+++.+..+ ..+++..++..++.+|. .-+.++.+|..+.++|+|++|.++.+.
T Consensus 25 ~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 25 ILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444433 233367999999999998765 45799999999998884 468899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 574 LRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 574 al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++..|+|..+......+...+.+
T Consensus 104 lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 104 LFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999888777777664
No 455
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=97.79 E-value=9e-05 Score=63.76 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
...+.+.+++...+....++||-|+..||.+| .+.+.+++..++++.|..++. .++++.|+|. .|++++|+.+
T Consensus 23 ~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~-~~~vvlfkkf 95 (124)
T 2l4c_A 23 PTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGISTD---SEVLTHYNIT-GNTICLFRLV 95 (124)
T ss_dssp CEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEECC---HHHHHHTTCC-SSCEEEEETT
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEECh---HHHHHHcCCC-CCeEEEEEcC
Confidence 34466777888888888899999999999988 677888888888899988865 5689999998 8999999987
Q ss_pred e-EEEEEcC----C-CHHHHHHHHhhhc
Q 005108 692 S-RMKEIVC----P-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~-~~~~~~g----~-~~~~l~~~~~~~~ 713 (714)
. ....+.| . +.+.|++||....
T Consensus 96 de~~~~~~g~~~~~~~~~~L~~FI~~n~ 123 (124)
T 2l4c_A 96 DNEQLNLEDEDIESIDATKLSRFIEINS 123 (124)
T ss_dssp TTEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred CCCceeecCcccCCCCHHHHHHHHHHhc
Confidence 4 4455665 4 9999999998764
No 456
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=97.78 E-value=5.3e-05 Score=71.74 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...++++|+|.
T Consensus 78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~ 157 (200)
T 3zrd_A 78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITE 157 (200)
T ss_dssp TSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECS
T ss_pred CCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeec
Confidence 457899999 689999999999999999998778888887663 23456778886
Q ss_pred ------ccceEEEE-eCCeEEEEEcCC
Q 005108 681 ------IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 ------~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.+|+++++ ++|+++...++.
T Consensus 158 ~~~~g~~~p~~~lID~~G~I~~~~~~~ 184 (200)
T 3zrd_A 158 GPLAGLTARAVVVLDGQDNVIYSELVN 184 (200)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred ccCCCccccEEEEECCCCeEEEEEecC
Confidence 36988777 999999987654
No 457
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=97.78 E-value=3.1e-06 Score=72.63 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=51.9
Q ss_pred HHhhhccCCCceEEEeecCCCcccccc-chHHHHHHhhCCCcEEEEEecccCc-------chhhhCCccccceEEEEeCC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQI-SPYVETLCGRYPSINFLKVDIDESP-------GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~~~~~~~vd~d~~~-------~l~~~~~v~~~Pt~~~~~~G 691 (714)
.++..+... .++.|+++||+.|+.+ .+.|+++.. +.+.|..+|++..+ ++.+.++++++|++ |.+|
T Consensus 17 ~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 90 (118)
T 3c1r_A 17 HVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YING 90 (118)
T ss_dssp HHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 444444333 3667999999999998 887765441 23788899998765 48888999999986 6699
Q ss_pred eEEE
Q 005108 692 SRMK 695 (714)
Q Consensus 692 ~~~~ 695 (714)
+.+.
T Consensus 91 ~~ig 94 (118)
T 3c1r_A 91 KHIG 94 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 458
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=97.78 E-value=5.1e-05 Score=69.91 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...+ +.|+|..
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~ 125 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGE 125 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCS
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecc
Confidence 457899999 799999999999999999888668887776553 2345 7788762
Q ss_pred -------cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 682 -------VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 682 -------~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++....|. +.+++.+.|+++
T Consensus 126 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 126 GALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred cccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 6887777 899999988752 557788877764
No 459
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.77 E-value=0.0003 Score=60.96 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=92.6
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCH------HHHHHHHHHhhccCCCC--------HHHHHHHHHHHHHh
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERF------TEACQAYGEGLRFDPSN--------SVLYCNRAACWFKL 527 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~ 527 (714)
-+.|++++.|..+ ...+.+.|+. ++-++.|++|+..-|.. ..+|...|.. ...
T Consensus 7 ~~~p~~yd~W~~y------------l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPEDWLSL------------LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHHHHHHH------------HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHHHHHHH------------HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 3578999999877 4555555777 88889999999876543 4566666644 677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 528 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
++.++|.+.|+.++.+......+|...|..-.++|+...|.+.+.+++.+.|...+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999999999999988899999999999999999999999999999999998876554
No 460
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=97.73 E-value=4.1e-05 Score=70.18 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=65.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..+ .++.++.|..|. ...++..|+|..
T Consensus 46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 124 (166)
T 3p7x_A 46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEE 124 (166)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETT
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcccc
Confidence 457888998 78999999999999999887 778888777653 235677889985
Q ss_pred ----cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhh
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRH 711 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~ 711 (714)
+|+++++ ++|+++....+. +.+++.+.|++
T Consensus 125 ~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 125 LRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred CCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988777 899999885533 45777777765
No 461
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=97.69 E-value=1.9e-05 Score=63.83 Aligned_cols=57 Identities=7% Similarity=0.210 Sum_probs=46.6
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--cCcchhhhC-CccccceEEEEeCCeEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--ESPGVAHAE-NVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--~~~~l~~~~-~v~~~Pt~~~~~~G~~~ 694 (714)
.++.|+++||+.|+.+.+.|+++. +.|..+|++ ..+++.+.+ ++..+|+++ .+|+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~-----i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKG-----VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHT-----CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 467899999999999999998763 567888887 566788888 999999985 488754
No 462
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=97.68 E-value=6.5e-05 Score=68.82 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=55.3
Q ss_pred CceEEEee-cCCCccccc-cchHHHHHHhhC--CCc-EEEEEeccc-----------------------CcchhhhCCcc
Q 005108 629 GVSVVHFK-SASNLHCKQ-ISPYVETLCGRY--PSI-NFLKVDIDE-----------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~-~~p~l~~l~~~~--~~~-~~~~vd~d~-----------------------~~~l~~~~~v~ 680 (714)
+.+++.|| +.||+.|.. ..|.+.++..++ .++ .++-|.+|. ..+++++|+|.
T Consensus 32 k~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 32 KKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 45677765 999999999 899999888777 368 888887653 23457788987
Q ss_pred cc-----------ceEEEEeCCeEEEEEcCC
Q 005108 681 IV-----------PTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 681 ~~-----------Pt~~~~~~G~~~~~~~g~ 700 (714)
.. |+.+|+++|+++...+++
T Consensus 112 ~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 112 LDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp ECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred cccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 54 865544999999988876
No 463
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=97.68 E-value=3.2e-05 Score=64.71 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=50.2
Q ss_pred hHHhhhccCCCceEEEeec-----CCCccccccchHHHHHHhhCCCcEEEEEecccCcch----hhhCCccccceEEEEe
Q 005108 619 EQFRAAVSLPGVSVVHFKS-----ASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV----AHAENVRIVPTFKIYK 689 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a-----~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~ 689 (714)
+.+...+... .+ +.|+. +||+.|+++.+.|+++. +.|..+|+++++++ ...+++..+|++ |.
T Consensus 8 ~~~~~~i~~~-~v-vvf~~g~~~~~~C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i 78 (105)
T 2yan_A 8 ERLKVLTNKA-SV-MLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQL--YV 78 (105)
T ss_dssp HHHHHHHTSS-SE-EEEESBCSSSBCTTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred HHHHHHhccC-CE-EEEEecCCCCCCCccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence 4455555544 33 34666 99999999999998863 66888999987764 455799999998 45
Q ss_pred CCeEEE
Q 005108 690 NGSRMK 695 (714)
Q Consensus 690 ~G~~~~ 695 (714)
||+.+.
T Consensus 79 ~g~~ig 84 (105)
T 2yan_A 79 KGELVG 84 (105)
T ss_dssp TTEEEE
T ss_pred CCEEEe
Confidence 898654
No 464
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=97.67 E-value=5.4e-05 Score=63.08 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=51.1
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----cchh----hhCCccccceEEEEeCC-eEEEEEcC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----PGVA----HAENVRIVPTFKIYKNG-SRMKEIVC 699 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----~~l~----~~~~v~~~Pt~~~~~~G-~~~~~~~g 699 (714)
..++.|+++||+.|+++.+.|+++. +.|-.+|++.. +++. ...++.++|++++ +| + .+.|
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~---~igg 91 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEK---AIVG 91 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTE---EEES
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCE---EEEc
Confidence 4577899999999999999998874 33455666542 2232 3469999999876 44 3 3457
Q ss_pred CCHHHHHHHHh
Q 005108 700 PSRDMLEHSVR 710 (714)
Q Consensus 700 ~~~~~l~~~~~ 710 (714)
++.++|++.|+
T Consensus 92 ~~~~~l~~~L~ 102 (103)
T 3nzn_A 92 FKEKEIRESLG 102 (103)
T ss_dssp CCHHHHHHHTT
T ss_pred CCHHHHHHHhC
Confidence 79999988763
No 465
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=97.66 E-value=7.7e-05 Score=72.77 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.6
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.||+ .||+.|....|.|.++..++. ++.++.|.+|. ..++++.
T Consensus 77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ 156 (240)
T 3qpm_A 77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKD 156 (240)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHH
Confidence 4588999999 999999999999999999884 58888777663 2346788
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 157 ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 157 YGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998 78988777 899999887753 566777766653
No 466
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=97.66 E-value=2e-05 Score=70.27 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------------------------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI--------------------------------------- 667 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~--------------------------------------- 667 (714)
+..++++.|...+|+.|+++.+.++++ +++.++.++.
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~ 88 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG 88 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence 456889999999999999999987653 5555543321
Q ss_pred -------ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 -------DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 -------d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.++++.+||+++|||++ .||+. +.|. +.++|++.|++.
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~~---i~G~~~~~~l~~~i~~~ 137 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGRT---QSGYSPMPQLEEIIRKN 137 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSCE---EESCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCEE---eeCCCCHHHHHHHHHHH
Confidence 11345678999999999998 78973 6788 999999999874
No 467
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=97.65 E-value=8e-05 Score=72.93 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCceEEEee-cCCCcccc-ccchHHHHHHhhC--CCc-EEEEEeccc----------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFK-SASNLHCK-QISPYVETLCGRY--PSI-NFLKVDIDE----------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~-~~~p~l~~l~~~~--~~~-~~~~vd~d~----------------------~~~l~~~~~v~ 680 (714)
.+.+++.|| +.||++|. ...|.+.++..++ .++ .++-|.+|. ..+++++|||.
T Consensus 33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 112 (241)
T 1nm3_A 33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGML 112 (241)
T ss_dssp TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCE
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCce
Confidence 357889998 99999999 9999999998877 368 888887764 23467888886
Q ss_pred -----------ccceEEEEeCCeEEEEEcCC
Q 005108 681 -----------IVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 681 -----------~~Pt~~~~~~G~~~~~~~g~ 700 (714)
.+|+.+++++|+++...+|.
T Consensus 113 ~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~ 143 (241)
T 1nm3_A 113 VGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP 143 (241)
T ss_dssp EECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred eecccccCcccceeEEEEEECCEEEEEEEec
Confidence 45765444999999988886
No 468
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=97.63 E-value=5.8e-05 Score=70.26 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=61.3
Q ss_pred ceEEEeecCCCccccc-cchHHHHHHhhCC--CcE-EEEEeccc-----------------------CcchhhhCCccc-
Q 005108 630 VSVVHFKSASNLHCKQ-ISPYVETLCGRYP--SIN-FLKVDIDE-----------------------SPGVAHAENVRI- 681 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~-~~p~l~~l~~~~~--~~~-~~~vd~d~-----------------------~~~l~~~~~v~~- 681 (714)
++++.||+.||+.|.. ..|.+.++..++. ++. ++-|.+|. ..+++++|||..
T Consensus 59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 138 (184)
T 3uma_A 59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEID 138 (184)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCcee
Confidence 5667788999999999 6999999988873 577 88887764 234678899863
Q ss_pred ----------cceEEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 682 ----------VPTFKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 682 ----------~Pt~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
.|+.+|+++|+++...++. +...+++.|++
T Consensus 139 ~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 139 LSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred ccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 4656555999999988875 24556666654
No 469
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=97.62 E-value=0.00015 Score=68.24 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=33.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
..+.|+.|+..||+.|..+.|.+.++..++++ +.|..+.+
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 45789999999999999999999999998874 66655543
No 470
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=97.56 E-value=0.00016 Score=70.98 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=66.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....|.|.++..+|. ++.++-|.+|. ..++++.
T Consensus 91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ 170 (254)
T 3tjj_A 91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD 170 (254)
T ss_dssp TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHH
Confidence 457889999 8999999999999999998884 58888777663 2345778
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++....+. +.+++...|+.+
T Consensus 171 ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al 218 (254)
T 3tjj_A 171 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218 (254)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8886 58987777 899999887753 567777766653
No 471
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=97.55 E-value=7.2e-05 Score=59.19 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=49.6
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
++.|+.+||+.|+.+.+.+++. ++.|..+|+++.+. +.+.+++..+|+++ .+|+.+. |. +.|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe---CH--HHHHH
Confidence 5678999999999999998875 35677788877544 45678999999984 4887653 32 44555
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 5543
No 472
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.00039 Score=61.77 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------C----
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---------SVLYCNRAACWFKLGQWERSVEDSNQALLIQ------P---- 545 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p---- 545 (714)
+....++..+.|+.|+-....++.+..++ ..++..+|.+++..++|.+|...|++++++. +
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44777899999999999999877664333 3588899999999999999999999997631 1
Q ss_pred ---------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 546 ---------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 546 ---------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
.+.++.+.++.||.+++++++|+..++..-. .-..+.+...|++.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 1237889999999999999999998765311 11345555555543
No 473
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=97.52 E-value=0.00013 Score=68.62 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
..++|+.|+..||++|+.+.|.+.++.+++++ +.|..+++
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 35789999999999999999999999999985 77766665
No 474
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=97.50 E-value=7.8e-05 Score=61.46 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=47.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC-----CccccceEEEEeCCeEEE
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE-----NVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~-----~v~~~Pt~~~~~~G~~~~ 695 (714)
...|+.|+.+||+.|+++.+.|+++. +.|..+|++..++..+.+ ++..+|++ |.+|+.+.
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKG-----VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-----CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 35678899999999999999998864 557788888877654444 89999987 56887654
No 475
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.47 E-value=0.00092 Score=59.36 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------C
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN---------AAFRSNRAAALTGLGRIGEAVKECEEAVRLD------P 307 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 307 (714)
..++.....++..|.|+.|+-..+.++....++ ..++..+|.+++..++|..|...|++++++. +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346778889999999999999999987664332 3588999999999999999999999987542 1
Q ss_pred -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 308 -------------------NYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 308 -------------------~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+.+..+.++.||..++++++|+..++.+-
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 123788999999999999999999997763
No 476
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.46 E-value=0.00076 Score=58.45 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCF------GEALSMYDKAISLAPRN--------AAFRSNRAAALTGLGRIGEAVKECEEA 302 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (714)
+.|+|++.|......+-+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999999999 89999999999987642 4556666644 5669999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+.+....+..|...|..-.++|+...|.+.+.+++.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 999888999999999999999999999999999876
No 477
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=97.45 E-value=0.00021 Score=65.06 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=57.3
Q ss_pred CCceEEEee-cCCCcccc-ccchHHHHHHhhC--CCcE-EEEEeccc-----------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCK-QISPYVETLCGRY--PSIN-FLKVDIDE-----------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~-~~~p~l~~l~~~~--~~~~-~~~vd~d~-----------------------~~~l~~~~~v 679 (714)
.+.+++.|| +.||+.|. ...|.+.++..++ .++. ++-|.+|. ..+++++|||
T Consensus 35 gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
T 1tp9_A 35 GKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGL 114 (162)
T ss_dssp TSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTC
T ss_pred CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCc
Confidence 457899999 89999999 8999999988777 3577 77776553 2346778888
Q ss_pred c-----------ccceEEEEeCCeEEEEEcCC
Q 005108 680 R-----------IVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 680 ~-----------~~Pt~~~~~~G~~~~~~~g~ 700 (714)
. .+|+++++.+|+++...+|.
T Consensus 115 ~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 115 ELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp EEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred ccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 7 37987666799999988876
No 478
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=97.43 E-value=0.00017 Score=66.37 Aligned_cols=82 Identities=7% Similarity=0.104 Sum_probs=59.7
Q ss_pred ceEEEeecCCCcccc-ccchHHHHHHhhCC--CcEEEE-Eeccc-----------------------CcchhhhCCcc--
Q 005108 630 VSVVHFKSASNLHCK-QISPYVETLCGRYP--SINFLK-VDIDE-----------------------SPGVAHAENVR-- 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~-~~~p~l~~l~~~~~--~~~~~~-vd~d~-----------------------~~~l~~~~~v~-- 680 (714)
++++.||+.||+.|. ...|.+.++..++. ++.++. |..|. ..+++++|||.
T Consensus 46 vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 125 (173)
T 3mng_A 46 GVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLD 125 (173)
T ss_dssp EEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCC
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcc
Confidence 556667799999999 58899999888773 477765 65553 33567888886
Q ss_pred -----------ccceEEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 681 -----------IVPTFKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 681 -----------~~Pt~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
..|+.+|+.+|+++...+++ +..+.++.|++
T Consensus 126 ~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 126 DSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp STTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred cccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 45876666699999988875 45666666654
No 479
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=97.40 E-value=0.00019 Score=66.84 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=63.3
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--------------------------------------
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE-------------------------------------- 669 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~-------------------------------------- 669 (714)
.++|+.|..-.||.|+.+.|.+.++..++++ +.+..+.+.-
T Consensus 22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (184)
T 4dvc_A 22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRK 101 (184)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999975 6665543220
Q ss_pred -------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 -------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 -------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
...+++.+||.++|||+| ||+.+-...+. +.+++.+.|+.
T Consensus 102 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~~ 179 (184)
T 4dvc_A 102 PPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVNY 179 (184)
T ss_dssp CCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHHH
Confidence 222366889999999877 99866555566 88999888876
Q ss_pred h
Q 005108 712 Y 712 (714)
Q Consensus 712 ~ 712 (714)
+
T Consensus 180 L 180 (184)
T 4dvc_A 180 L 180 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 480
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=97.36 E-value=0.0001 Score=59.90 Aligned_cols=58 Identities=10% Similarity=0.286 Sum_probs=45.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.++.|+.+||+.|+.+.+.|++. ++.|..+|+++.+. +.+.+++..+|++ +.+|+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 46789999999999999988764 46678888887654 4447899999975 45887544
No 481
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=97.35 E-value=0.00012 Score=68.28 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc--------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-------------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-------------------------------------- 669 (714)
..++||.|+..||++|+.+.|.+.++.+++ ++.|.++.+.-
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~ 100 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE 100 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999999887 66665554320
Q ss_pred ----------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 670 ----------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 670 ----------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
...+++++||.++|||+| ||+.+-...|. +.+.+.+.
T Consensus 101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~~ 178 (185)
T 3feu_A 101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT 178 (185)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHHH
Confidence 000134568899999987 89876555788 99999988
Q ss_pred Hhhh
Q 005108 709 VRHY 712 (714)
Q Consensus 709 ~~~~ 712 (714)
|+.+
T Consensus 179 i~~l 182 (185)
T 3feu_A 179 IRYL 182 (185)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 482
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=97.34 E-value=8.5e-05 Score=63.06 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=47.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cc----hhhhCCccccceEEEEeC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PG----VAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~----l~~~~~v~~~Pt~~~~~~ 690 (714)
+.++..+.... ++.|+.+||+.|+++.+.|+++. +.|-.+|++.. ++ +...+++..+|++ |.+
T Consensus 10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~ 80 (113)
T 3rhb_A 10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG-----VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVC 80 (113)
T ss_dssp HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC-----CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 44455554433 67799999999999999998753 34556666652 22 4555699999998 569
Q ss_pred CeEEE
Q 005108 691 GSRMK 695 (714)
Q Consensus 691 G~~~~ 695 (714)
|+.+.
T Consensus 81 g~~ig 85 (113)
T 3rhb_A 81 GKHIG 85 (113)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 98765
No 483
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=97.32 E-value=0.00023 Score=65.68 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--C-CcEEEEEeccc-----------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--P-SINFLKVDIDE----------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~-~~~~~~vd~d~----------------------------------- 669 (714)
..+.|+.|+..+|+.|+.+.+.+.++..+| + ++.++.+++.-
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 346899999999999999999999988887 4 47776655420
Q ss_pred -------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 -------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 -------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
..++++.+||.++|||+| ||+. +.|. +.+.|++.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~---~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE---ccCCCCHHHHHHHhcC
Confidence 011245779999999765 8984 4687 99999988763
No 484
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=97.29 E-value=0.0002 Score=65.78 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=54.1
Q ss_pred CceEEEeecCCCcccccc-chHHHHHHhhC--CCcE-EEEEeccc-----------------------CcchhhhCCccc
Q 005108 629 GVSVVHFKSASNLHCKQI-SPYVETLCGRY--PSIN-FLKVDIDE-----------------------SPGVAHAENVRI 681 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~--~~~~-~~~vd~d~-----------------------~~~l~~~~~v~~ 681 (714)
.++++.||+.||++|... .|.+.++..++ .++. ++-|+++. ..+++++|||..
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~ 124 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT 124 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCcc
Confidence 467889999999999998 89999888777 3577 88887653 233567778763
Q ss_pred -----------cc-eEEEEeCCeEEEEEcCC
Q 005108 682 -----------VP-TFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 682 -----------~P-t~~~~~~G~~~~~~~g~ 700 (714)
.| +++|. +|+++...+|.
T Consensus 125 ~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~ 154 (171)
T 2pwj_A 125 DLSAGLLGIRSERWSAYVV-DGKVKALNVEE 154 (171)
T ss_dssp ECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred ccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence 34 55665 99999988886
No 485
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=97.28 E-value=0.00027 Score=67.83 Aligned_cols=83 Identities=4% Similarity=0.047 Sum_probs=64.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhCCc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAENV 679 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~~v 679 (714)
++++.||+.||+.|....+.|.++..++. ++.++.|.+|. ..++++.|+|
T Consensus 34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv 113 (220)
T 1xcc_A 34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI 113 (220)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence 56666799999999999999999988774 57888777653 2335778888
Q ss_pred c------------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 680 R------------IVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
. .+|+++|+ ++|+++..+.+ .+.++|...|+.+
T Consensus 114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4 47887777 89999998864 3778888887764
No 486
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.26 E-value=0.00099 Score=61.06 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhC----CCcEEEEEeccc---Ccch----hhh-------------------
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRY----PSINFLKVDIDE---SPGV----AHA------------------- 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~----~~~~~~~vd~d~---~~~l----~~~------------------- 676 (714)
++++++.||.+||+ .|....+.+.++...+ .++.++.|.+|- .++. ++.
T Consensus 32 Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~ 111 (170)
T 4hde_A 32 GKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDI 111 (170)
T ss_dssp TSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHH
T ss_pred CCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHHH
Confidence 56899999999997 7998888888877665 358888887652 1111 111
Q ss_pred -----------------CCccccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 677 -----------------ENVRIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 677 -----------------~~v~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+.|.+.|+++++ ++|+.+..+.|. ..++|.+.|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 112 TKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 233445666666 999999988875 567788777765
No 487
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=97.24 E-value=0.00044 Score=64.93 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=32.7
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
.+.++.|+..+|+.|..+.|.+.++..++++ +.|..+.+
T Consensus 26 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred CeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 4678999999999999999999999998874 66655544
No 488
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=97.24 E-value=0.00016 Score=61.46 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=48.1
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.++..+.... ++.|+.+||+.|..+.+.|+++. +.|-.+|++.. +.+.+..|...+|++++ +
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~-----i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLG-----VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 345555554433 45599999999999999988753 44566676642 23556778999999865 8
Q ss_pred CeEEE
Q 005108 691 GSRMK 695 (714)
Q Consensus 691 G~~~~ 695 (714)
|+.+.
T Consensus 78 g~~ig 82 (114)
T 3h8q_A 78 KVHVG 82 (114)
T ss_dssp TEEEE
T ss_pred CEEEe
Confidence 87654
No 489
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=97.23 E-value=0.00061 Score=65.59 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=64.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------------Ccchhhh
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------------SPGVAHA 676 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------------~~~l~~~ 676 (714)
++++.||+.||+.|....+.+.++..++. ++.++.|.+|. ..++++.
T Consensus 34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ 113 (224)
T 1prx_A 34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL 113 (224)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence 56777799999999999999999998874 57777776653 2235678
Q ss_pred CCcc------------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++..+.++ +.++|...|+.+
T Consensus 114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8884 47887777 899999988753 678888877754
No 490
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=97.22 E-value=0.00021 Score=66.96 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=33.9
Q ss_pred CceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEecc
Q 005108 629 GVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDID 668 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d 668 (714)
.++++.|++.||++|+.+.|.+ ..+.++++ ++.|+++++.
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 4789999999999999999986 68888887 4888877754
No 491
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.21 E-value=0.022 Score=50.07 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=110.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC--------
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR--LD-------- 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-------- 306 (714)
+.|..++....++..++-.|+|..|+-++.+ -+.....+..+.||..+.+|.+|+..++..+. .+
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 5667778888899999999999999988764 35678888999999999999999999999983 22
Q ss_pred -------CCcH-HHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH---------HHHHHHhHHHHHcCCHH
Q 005108 307 -------PNYW-RAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV---------EKHLSKCTDARKVGDWK 368 (714)
Q Consensus 307 -------p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~---------~~~~~~a~~~~~~g~~~ 368 (714)
|.+. -.+..+|.++.+.|+.++|+.+|..... ..-......+..- +.....+..-.+...+.
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~ 182 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVS 182 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhh
Confidence 3333 3567889999999999999999976532 1100000000000 00000000000000011
Q ss_pred HHH--------HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCC
Q 005108 369 SAL--------REGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418 (714)
Q Consensus 369 ~Al--------~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 418 (714)
... ...++-...-|..-..+....+..|+.+|..++...+|..+-..+|.
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 111 12222223345433444556788899999999999999998888875
No 492
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=97.11 E-value=0.00023 Score=57.26 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=45.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cchhhhCCc-----cccceEEEEeCCeEEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PGVAHAENV-----RIVPTFKIYKNGSRMK 695 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~l~~~~~v-----~~~Pt~~~~~~G~~~~ 695 (714)
..++.|+.+||+.|+++...|+++.. .+.++.||+++. +++.+.++. ..+|++++ +|+.+.
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~ 73 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG 73 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe
Confidence 34778999999999999988876542 345666666554 457777787 99999865 887654
No 493
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=97.10 E-value=9.6e-05 Score=64.25 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=50.8
Q ss_pred hhhHHhhhccCCCceEEEeecCCCcccccc-chHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQI-SPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~ 688 (714)
..+.++..+... .|+.|+.+||+.|+++ .+.|+++... .+.|..+|++.. .++.+.+|+..+|++ |
T Consensus 26 ~~~~v~~~i~~~--~Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--f 99 (129)
T 3ctg_A 26 TVAHVKDLIGQK--EVFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--Y 99 (129)
T ss_dssp HHHHHHHHHHHS--SEEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred HHHHHHHHHcCC--CEEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--E
Confidence 334555555433 3678899999999999 8887665421 255666776654 357788899999995 6
Q ss_pred eCCeEEE
Q 005108 689 KNGSRMK 695 (714)
Q Consensus 689 ~~G~~~~ 695 (714)
.+|+.+.
T Consensus 100 i~g~~ig 106 (129)
T 3ctg_A 100 INGKHIG 106 (129)
T ss_dssp ETTEEEE
T ss_pred ECCEEEc
Confidence 6888654
No 494
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=97.09 E-value=0.00072 Score=65.32 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=63.8
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------------CcchhhhC
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------------SPGVAHAE 677 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------------~~~l~~~~ 677 (714)
.+++.|| +.||+.|....+.|.++..++. ++.++.|.+|. ..++++.|
T Consensus 31 ~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~y 110 (233)
T 2v2g_A 31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKL 110 (233)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHT
T ss_pred eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHh
Confidence 6788887 8999999999999999888773 57777776553 22356788
Q ss_pred Ccc------------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 678 NVR------------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~------------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
+|. .+|+++|+ ++|+++..++++ +.++|...|+.+
T Consensus 111 gv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 111 GMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp TCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 885 57888777 899999888653 678888877754
No 495
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=97.09 E-value=0.0018 Score=61.66 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=60.6
Q ss_pred CCceEEEeecCC-Ccccc-----ccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSAS-NLHCK-----QISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~-----~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~ 678 (714)
.+.+|+.||..| |+.|. ...+.+.++ +.++.++-|.+|. ...++++||
T Consensus 48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yG 124 (224)
T 3keb_A 48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYG 124 (224)
T ss_dssp TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTT
T ss_pred CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhC
Confidence 457899999988 99999 666666555 5677887776653 246888999
Q ss_pred ccc---------cceEEEE-eCCeEEEEEcC------CCHHHHHHHHhhh
Q 005108 679 VRI---------VPTFKIY-KNGSRMKEIVC------PSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~---------~Pt~~~~-~~G~~~~~~~g------~~~~~l~~~~~~~ 712 (714)
|.. +|+++|+ ++|+++...+. ++.+++.+.|+.+
T Consensus 125 v~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 125 VLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred CccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence 975 7887777 89999987653 2567777777654
No 496
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.05 E-value=0.0051 Score=52.34 Aligned_cols=80 Identities=8% Similarity=-0.052 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCF---GEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..++..+..|.++.+..+. .+++.+++..++.+|. .-++++.+|..++++|+|++|+++.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4678899999999888754 5789999999998884 47899999999999999999999999999999999877665
Q ss_pred HHHH
Q 005108 316 LGSL 319 (714)
Q Consensus 316 la~~ 319 (714)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 497
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.03 E-value=0.0077 Score=51.91 Aligned_cols=82 Identities=7% Similarity=-0.068 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCF---GEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
....++..+..|.++.+..+. .+++.+++..++.+|. .-++++.+|..++++|+|++|.++.+.+++.+|++..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 356889999999999988754 5799999999998884 577999999999999999999999999999999998776
Q ss_pred HHHHHH
Q 005108 314 QRLGSL 319 (714)
Q Consensus 314 ~~la~~ 319 (714)
.....+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 498
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.038 Score=63.92 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKA 460 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~a 460 (714)
...|..+|..+.+.++++.|+++|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345666677777777777766666654
No 499
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=96.97 E-value=0.0023 Score=61.77 Aligned_cols=94 Identities=10% Similarity=0.124 Sum_probs=71.3
Q ss_pred hHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--CcchhhhCCcc--ccceEEEEeC-C
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE--SPGVAHAENVR--IVPTFKIYKN-G 691 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~--~~~l~~~~~v~--~~Pt~~~~~~-G 691 (714)
+.+......+. ..++.|...||..|..+.+.+.+++.++.+ +.|+.+|.++ ...+++.|||. .+|++.|+.. +
T Consensus 121 ~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~ 200 (227)
T 4f9z_D 121 VTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLD 200 (227)
T ss_dssp HHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSS
T ss_pred ccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCC
Confidence 44444444432 445567788999999999999999999975 9999999964 56788999998 8999999953 3
Q ss_pred eEEEEEc-CC-CHHHHHHHHhhh
Q 005108 692 SRMKEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~-g~-~~~~l~~~~~~~ 712 (714)
.....+. +. +.+.|+++|+.+
T Consensus 201 ~~ky~~~~~~~t~~~i~~Fv~~~ 223 (227)
T 4f9z_D 201 DEWDTLPTAEVSVEHVQNFCDGF 223 (227)
T ss_dssp CCEEEETTCCCCHHHHHHHHHHH
T ss_pred CccccCCcCCCCHHHHHHHHHHH
Confidence 3334443 44 999999999876
No 500
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.96 E-value=0.3 Score=50.54 Aligned_cols=123 Identities=14% Similarity=-0.026 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCC
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID---PRN 467 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 467 (714)
.++..|+..|+|.+|.+.+.++.+.-... .+......++....++|...+++.++...+.++.... +.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--------dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL--------DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS--------SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 58999999999999999988877532221 0112336678888999999999999999999987542 233
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHh-hCcCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFDPSN-----SVLYCNRAACWFKLGQ 529 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~ 529 (714)
+.....+.. .-|..+. ..++|.+|..+|-++++-...- ..+...++.|-...++
T Consensus 176 p~i~a~i~~--------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 176 PKVQGALDL--------QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHH--------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--------HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 333322211 3488888 8999999999999887532211 2334445555555555
Done!