Query 005109
Match_columns 714
No_of_seqs 456 out of 2882
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 7E-113 2E-117 904.0 47.9 567 105-714 1-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 4E-110 8E-115 938.8 48.2 597 99-714 41-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 4E-106 1E-110 922.9 61.6 539 103-714 60-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 2E-103 4E-108 906.3 61.5 538 104-714 58-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 3E-100 6E-105 862.1 51.3 541 103-714 46-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.6E-78 3.5E-83 673.1 45.1 395 311-714 2-416 (416)
7 cd06203 methionine_synthase_re 100.0 5.2E-77 1.1E-81 657.9 43.6 381 319-714 2-398 (398)
8 cd06202 Nitric_oxide_synthase 100.0 1.6E-76 3.4E-81 655.2 45.0 386 319-714 2-402 (406)
9 cd06207 CyPoR_like NADPH cytoc 100.0 9.8E-77 2.1E-81 653.4 42.9 378 319-714 2-382 (382)
10 cd06206 bifunctional_CYPOR The 100.0 1.4E-73 3E-78 628.7 43.0 375 318-714 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 3.2E-71 7E-76 604.4 38.7 355 319-714 2-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.8E-70 3.8E-75 616.8 41.3 370 305-714 159-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 5.2E-47 1.1E-51 386.5 19.5 217 308-531 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 7.4E-39 1.6E-43 347.1 28.1 273 308-714 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 2.6E-36 5.6E-41 316.8 24.0 233 475-714 31-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 4E-33 8.7E-38 296.0 30.6 189 491-714 100-289 (289)
17 cd06200 SiR_like1 Cytochrome p 100.0 4.4E-34 9.5E-39 296.5 21.1 211 475-714 31-245 (245)
18 PLN03116 ferredoxin--NADP+ red 100.0 1.1E-33 2.5E-38 302.8 21.9 213 490-714 80-307 (307)
19 TIGR03224 benzo_boxA benzoyl-C 100.0 1.4E-32 3E-37 304.5 30.2 270 308-714 136-411 (411)
20 cd06208 CYPOR_like_FNR These f 100.0 4.2E-33 9.2E-38 295.6 21.7 225 477-714 42-286 (286)
21 PRK09004 FMN-binding protein M 100.0 3.5E-33 7.5E-38 266.5 16.6 144 104-259 1-146 (146)
22 PRK05723 flavodoxin; Provision 100.0 6.6E-33 1.4E-37 265.5 16.1 147 105-260 1-150 (151)
23 PRK08105 flavodoxin; Provision 100.0 9.2E-33 2E-37 264.5 16.6 145 104-259 1-147 (149)
24 PF00258 Flavodoxin_1: Flavodo 99.9 1.3E-26 2.9E-31 220.4 11.0 137 109-251 1-143 (143)
25 cd00322 FNR_like Ferredoxin re 99.9 1.3E-24 2.8E-29 221.3 15.2 188 475-684 22-213 (223)
26 PRK07308 flavodoxin; Validated 99.9 3.7E-24 8E-29 204.7 16.4 140 104-255 1-142 (146)
27 PRK10926 ferredoxin-NADP reduc 99.9 1.6E-24 3.5E-29 225.3 13.9 186 476-684 31-228 (248)
28 cd06188 NADH_quinone_reductase 99.9 1.9E-24 4.1E-29 229.2 14.7 179 491-684 86-271 (283)
29 cd06189 flavin_oxioreductase N 99.9 2.4E-24 5.2E-29 220.4 14.9 183 475-684 25-212 (224)
30 cd06211 phenol_2-monooxygenase 99.9 7.6E-24 1.7E-28 218.8 15.2 184 475-684 35-226 (238)
31 PRK08051 fre FMN reductase; Va 99.9 7E-24 1.5E-28 218.4 14.6 183 475-684 29-217 (232)
32 cd06190 T4MO_e_transfer_like T 99.9 6.9E-24 1.5E-28 218.1 14.6 185 476-684 24-218 (232)
33 PRK07609 CDP-6-deoxy-delta-3,4 99.9 5E-24 1.1E-28 231.7 14.2 182 476-684 132-320 (339)
34 PRK13289 bifunctional nitric o 99.9 8.8E-24 1.9E-28 234.7 15.5 183 477-684 186-380 (399)
35 PRK05464 Na(+)-translocating N 99.9 9.5E-24 2.1E-28 234.9 15.0 181 489-684 208-395 (409)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 1.5E-23 3.3E-28 216.1 15.2 184 475-684 34-223 (236)
37 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.5E-23 3.1E-28 215.2 14.6 180 475-683 30-214 (228)
38 cd06191 FNR_iron_sulfur_bindin 99.9 1.6E-23 3.5E-28 215.3 14.1 185 476-683 28-218 (231)
39 TIGR01941 nqrF NADH:ubiquinone 99.9 1.7E-23 3.8E-28 232.5 15.4 181 489-684 204-391 (405)
40 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2.1E-23 4.6E-28 215.9 14.4 187 476-685 25-224 (241)
41 PRK11872 antC anthranilate dio 99.9 2.2E-23 4.9E-28 226.5 15.2 181 476-684 137-323 (340)
42 cd06187 O2ase_reductase_like T 99.9 3.2E-23 6.9E-28 211.8 15.1 182 476-684 24-212 (224)
43 cd06212 monooxygenase_like The 99.9 3E-23 6.5E-28 213.4 14.8 183 475-684 29-219 (232)
44 PRK10684 HCP oxidoreductase, N 99.9 3.3E-23 7E-28 224.6 14.8 184 476-684 37-225 (332)
45 PRK08345 cytochrome-c3 hydroge 99.9 3.4E-23 7.3E-28 220.1 14.4 180 476-684 38-234 (289)
46 cd06194 FNR_N-term_Iron_sulfur 99.9 8.5E-23 1.8E-27 208.6 15.9 183 476-684 24-209 (222)
47 PRK06703 flavodoxin; Provision 99.9 2.9E-22 6.2E-27 192.7 17.3 146 104-261 1-149 (151)
48 PRK05713 hypothetical protein; 99.9 1E-22 2.2E-27 218.9 14.0 176 476-684 119-296 (312)
49 cd06213 oxygenase_e_transfer_s 99.9 1.9E-22 4E-27 206.9 14.3 179 476-684 28-215 (227)
50 cd06184 flavohem_like_fad_nad_ 99.9 2.2E-22 4.7E-27 209.0 14.7 180 476-684 37-231 (247)
51 cd06215 FNR_iron_sulfur_bindin 99.9 2.1E-22 4.5E-27 206.8 14.2 185 476-684 28-219 (231)
52 PRK12359 flavodoxin FldB; Prov 99.9 6.3E-22 1.4E-26 193.1 16.7 144 105-262 1-171 (172)
53 cd06221 sulfite_reductase_like 99.9 2.3E-22 5.1E-27 209.7 14.2 181 475-684 27-212 (253)
54 cd06216 FNR_iron_sulfur_bindin 99.9 2E-22 4.3E-27 208.8 12.6 181 476-684 46-232 (243)
55 cd06196 FNR_like_1 Ferredoxin 99.9 4.5E-22 9.8E-27 202.6 13.2 177 475-684 27-208 (218)
56 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 7.7E-22 1.7E-26 215.6 14.5 187 475-684 32-229 (352)
57 cd06217 FNR_iron_sulfur_bindin 99.9 7.7E-22 1.7E-26 203.1 13.4 183 476-684 31-223 (235)
58 cd06214 PA_degradation_oxidore 99.9 1.2E-21 2.6E-26 202.5 14.8 187 475-684 32-228 (241)
59 PTZ00274 cytochrome b5 reducta 99.9 8.5E-22 1.8E-26 211.7 13.1 185 475-680 81-281 (325)
60 cd06198 FNR_like_3 NAD(P) bind 99.9 9E-22 1.9E-26 200.2 12.3 177 476-684 23-203 (216)
61 PRK08221 anaerobic sulfite red 99.9 1.2E-21 2.7E-26 205.4 13.6 177 476-684 33-214 (263)
62 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.7E-21 3.8E-26 202.3 13.9 171 476-684 25-202 (246)
63 KOG1160 Fe-S oxidoreductase [E 99.9 2E-21 4.4E-26 204.6 13.9 141 106-261 48-194 (601)
64 cd06183 cyt_b5_reduct_like Cyt 99.9 3.4E-21 7.4E-26 197.9 14.3 185 475-683 28-223 (234)
65 COG1018 Hmp Flavodoxin reducta 99.9 4.1E-21 8.8E-26 200.6 14.8 180 476-685 35-219 (266)
66 TIGR02911 sulfite_red_B sulfit 99.9 2.9E-21 6.3E-26 202.4 13.6 177 476-684 31-212 (261)
67 PTZ00319 NADH-cytochrome B5 re 99.8 6E-21 1.3E-25 203.8 14.2 194 476-684 64-290 (300)
68 PRK09271 flavodoxin; Provision 99.8 1.8E-20 4E-25 182.0 14.8 142 105-259 1-147 (160)
69 cd06185 PDR_like Phthalate dio 99.8 1.7E-20 3.7E-25 190.0 14.6 172 475-684 25-198 (211)
70 PRK06756 flavodoxin; Provision 99.8 5.7E-20 1.2E-24 176.1 16.2 137 104-252 1-137 (148)
71 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1.4E-20 3E-25 192.4 12.2 147 491-683 60-211 (220)
72 TIGR01752 flav_long flavodoxin 99.8 1.2E-19 2.5E-24 177.6 16.0 140 106-259 1-166 (167)
73 PRK00054 dihydroorotate dehydr 99.8 2.8E-20 6E-25 193.8 12.2 167 475-684 31-203 (250)
74 TIGR01754 flav_RNR ribonucleot 99.8 7.5E-20 1.6E-24 173.7 13.3 136 105-255 1-139 (140)
75 COG0543 UbiB 2-polyprenylpheno 99.8 7.4E-20 1.6E-24 190.6 13.9 177 475-684 35-214 (252)
76 TIGR01753 flav_short flavodoxi 99.8 2.5E-19 5.5E-24 169.3 14.5 120 107-239 1-121 (140)
77 cd06220 DHOD_e_trans_like2 FAD 99.8 1.1E-19 2.4E-24 187.3 12.7 165 475-684 23-189 (233)
78 PRK06222 ferredoxin-NADP(+) re 99.8 6.8E-20 1.5E-24 194.1 11.4 172 476-684 28-203 (281)
79 cd06192 DHOD_e_trans_like FAD/ 99.8 1.3E-19 2.8E-24 187.9 13.2 172 476-685 25-201 (243)
80 COG2871 NqrF Na+-transporting 99.8 1.2E-19 2.5E-24 182.6 12.3 184 491-689 211-401 (410)
81 cd06219 DHOD_e_trans_like1 FAD 99.8 2E-19 4.4E-24 187.1 12.1 171 476-683 27-201 (248)
82 PRK05802 hypothetical protein; 99.8 1.4E-19 3E-24 194.6 9.8 169 477-684 96-276 (320)
83 PLN02252 nitrate reductase [NA 99.8 4.4E-19 9.5E-24 211.7 14.3 194 476-684 665-878 (888)
84 COG4097 Predicted ferric reduc 99.8 7.1E-19 1.5E-23 183.5 13.9 164 488-684 259-423 (438)
85 COG0716 FldA Flavodoxins [Ener 99.8 6.1E-18 1.3E-22 162.7 16.0 143 104-258 1-150 (151)
86 PTZ00306 NADH-dependent fumara 99.8 1.4E-18 3.1E-23 215.3 13.4 186 476-684 948-1151(1167)
87 KOG0534 NADH-cytochrome b-5 re 99.8 6.9E-18 1.5E-22 175.5 16.4 179 476-681 82-273 (286)
88 PRK09267 flavodoxin FldA; Vali 99.8 1.1E-17 2.5E-22 163.8 16.3 142 104-259 1-167 (169)
89 PF00175 NAD_binding_1: Oxidor 99.7 1.4E-17 3.1E-22 150.4 8.9 104 568-679 1-109 (109)
90 PRK12778 putative bifunctional 99.7 3.6E-17 7.8E-22 195.6 12.3 171 476-683 28-202 (752)
91 cd06186 NOX_Duox_like_FAD_NADP 99.7 1.2E-16 2.6E-21 161.7 11.5 169 475-683 24-197 (210)
92 cd06193 siderophore_interactin 99.7 5.7E-17 1.2E-21 167.3 8.8 157 490-683 63-219 (235)
93 PRK12779 putative bifunctional 99.7 5.8E-16 1.3E-20 187.4 14.8 182 476-684 677-869 (944)
94 TIGR00333 nrdI ribonucleoside- 99.6 1.5E-15 3.2E-20 140.1 9.3 92 109-226 1-93 (125)
95 PRK12775 putative trifunctiona 99.6 3.3E-15 7.2E-20 182.3 11.8 170 476-683 28-202 (1006)
96 PRK11921 metallo-beta-lactamas 99.6 7.9E-15 1.7E-19 162.7 13.1 145 102-257 245-391 (394)
97 PRK02551 flavoprotein NrdI; Pr 99.6 1.2E-14 2.6E-19 138.6 11.3 138 104-255 1-146 (154)
98 PRK05452 anaerobic nitric oxid 99.6 2.2E-14 4.8E-19 162.3 13.7 146 103-260 250-397 (479)
99 PRK05569 flavodoxin; Provision 99.5 1E-13 2.2E-18 131.6 13.4 115 104-234 1-117 (141)
100 PRK05568 flavodoxin; Provision 99.5 1.4E-13 3E-18 130.8 13.0 114 104-234 1-116 (142)
101 PRK03600 nrdI ribonucleotide r 99.5 2.7E-13 5.8E-18 127.2 11.8 121 106-257 2-130 (134)
102 PLN02292 ferric-chelate reduct 99.4 1.2E-12 2.6E-17 152.5 13.3 177 477-670 353-546 (702)
103 PLN02844 oxidoreductase/ferric 99.4 1.1E-12 2.4E-17 153.2 12.5 182 475-670 338-535 (722)
104 PLN02631 ferric-chelate reduct 99.4 1.2E-12 2.7E-17 152.0 9.9 148 475-638 334-492 (699)
105 PRK06242 flavodoxin; Provision 99.3 2.5E-11 5.3E-16 116.4 11.0 107 105-234 1-108 (150)
106 PRK03767 NAD(P)H:quinone oxido 99.1 6.3E-10 1.4E-14 112.2 13.4 126 104-232 1-141 (200)
107 TIGR01755 flav_wrbA NAD(P)H:qu 99.1 7.7E-10 1.7E-14 111.2 13.4 124 106-232 2-140 (197)
108 PRK11104 hemG protoporphyrinog 99.1 3.8E-10 8.3E-15 111.5 9.0 87 105-206 1-87 (177)
109 PRK07116 flavodoxin; Provision 99.1 1.1E-09 2.3E-14 106.5 11.4 133 104-255 2-158 (160)
110 COG0426 FpaA Uncharacterized f 99.0 1.3E-09 2.8E-14 117.7 11.4 117 105-234 247-363 (388)
111 PF07972 Flavodoxin_NdrI: NrdI 99.0 1.2E-09 2.7E-14 100.2 7.2 115 109-251 1-120 (122)
112 KOG3378 Globins and related he 98.9 6.4E-10 1.4E-14 112.2 2.7 180 475-687 180-371 (385)
113 PF12724 Flavodoxin_5: Flavodo 98.8 1.9E-08 4.2E-13 95.9 9.1 86 108-208 1-86 (143)
114 COG1780 NrdI Protein involved 98.8 3.7E-08 8E-13 90.4 9.1 124 106-259 2-133 (141)
115 PF08030 NAD_binding_6: Ferric 98.7 3.1E-08 6.8E-13 95.3 8.1 73 565-637 3-78 (156)
116 PF03358 FMN_red: NADPH-depend 98.6 2.8E-07 6E-12 88.4 11.3 124 105-233 1-141 (152)
117 PF12641 Flavodoxin_3: Flavodo 98.5 3.1E-07 6.6E-12 89.1 9.4 96 108-226 1-98 (160)
118 COG4635 HemG Flavodoxin [Energ 98.4 4.4E-07 9.5E-12 85.5 6.1 88 105-206 1-88 (175)
119 PF12682 Flavodoxin_4: Flavodo 98.4 1.7E-06 3.8E-11 83.7 9.2 132 106-255 1-156 (156)
120 KOG0039 Ferric reductase, NADH 98.3 3.6E-06 7.8E-11 98.9 11.0 131 477-621 383-536 (646)
121 PRK10569 NAD(P)H-dependent FMN 98.1 6.3E-05 1.4E-09 75.3 15.6 120 105-232 1-133 (191)
122 PRK06934 flavodoxin; Provision 98.1 5.7E-05 1.2E-09 76.9 13.5 135 104-255 59-217 (221)
123 PRK06567 putative bifunctional 98.0 1.4E-05 3E-10 96.0 8.7 83 476-578 819-908 (1028)
124 TIGR03567 FMN_reduc_SsuE FMN r 97.9 0.00019 4.2E-09 70.5 14.2 121 106-234 1-134 (171)
125 PRK00170 azoreductase; Reviewe 97.9 0.00031 6.8E-09 70.6 15.4 155 104-260 1-196 (201)
126 PRK09739 hypothetical protein; 97.9 0.00029 6.3E-09 70.9 15.1 156 104-262 3-197 (199)
127 PRK01355 azoreductase; Reviewe 97.9 0.00036 7.7E-09 70.3 15.3 158 104-262 1-195 (199)
128 TIGR03566 FMN_reduc_MsuE FMN r 97.8 0.00039 8.5E-09 68.5 14.2 120 106-232 1-135 (174)
129 PF02525 Flavodoxin_2: Flavodo 97.7 0.0012 2.6E-08 66.4 15.0 153 105-259 1-199 (199)
130 PRK13556 azoreductase; Provisi 97.5 0.003 6.5E-08 64.1 16.0 155 104-260 1-202 (208)
131 PF00970 FAD_binding_6: Oxidor 97.4 5.4E-05 1.2E-09 67.1 1.3 67 475-557 29-98 (99)
132 COG0655 WrbA Multimeric flavod 97.2 0.0029 6.3E-08 64.1 11.6 122 106-231 5-147 (207)
133 PRK04930 glutathione-regulated 96.8 0.075 1.6E-06 52.9 16.5 158 102-263 3-179 (184)
134 TIGR02690 resist_ArsH arsenica 96.5 0.049 1.1E-06 55.6 13.8 127 101-232 23-161 (219)
135 PRK13555 azoreductase; Provisi 96.3 0.18 3.8E-06 51.3 16.4 127 104-231 1-174 (208)
136 COG0431 Predicted flavoprotein 94.8 0.28 6.2E-06 48.7 11.3 122 105-233 1-135 (184)
137 COG2375 ViuB Siderophore-inter 94.7 0.42 9.1E-06 50.0 12.3 173 488-701 84-258 (265)
138 PRK00871 glutathione-regulated 94.3 0.94 2E-05 44.8 13.4 151 107-261 2-169 (176)
139 KOG3135 1,4-benzoquinone reduc 93.4 0.16 3.5E-06 48.7 5.8 129 104-237 1-145 (203)
140 COG2249 MdaB Putative NADPH-qu 90.2 5.1 0.00011 40.1 12.6 157 105-262 1-187 (189)
141 cd06182 CYPOR_like NADPH cytoc 87.9 0.61 1.3E-05 49.2 4.4 42 319-360 2-44 (267)
142 KOG1160 Fe-S oxidoreductase [E 85.5 1.4 3E-05 48.6 5.6 164 60-234 317-487 (601)
143 KOG0560 Sulfite reductase (fer 85.2 0.37 8.1E-06 53.4 1.1 62 202-263 1-70 (638)
144 PRK02261 methylaspartate mutas 77.1 63 0.0014 30.5 13.0 129 105-256 2-134 (137)
145 PLN03116 ferredoxin--NADP+ red 65.7 12 0.00026 40.3 5.9 51 309-360 19-69 (307)
146 cd06208 CYPOR_like_FNR These f 65.0 13 0.00028 39.5 6.1 48 311-359 5-52 (286)
147 TIGR00640 acid_CoA_mut_C methy 61.4 72 0.0016 29.9 9.6 111 107-236 3-113 (132)
148 cd05566 PTS_IIB_galactitol PTS 58.9 30 0.00065 29.6 6.2 29 105-133 1-29 (89)
149 TIGR01501 MthylAspMutase methy 58.5 1.7E+02 0.0036 27.7 12.1 127 108-254 3-130 (134)
150 cd02072 Glm_B12_BD B12 binding 58.4 1.1E+02 0.0024 28.6 10.2 115 109-236 2-116 (128)
151 PF08022 FAD_binding_8: FAD-bi 57.8 3.4 7.3E-05 37.0 0.0 49 475-536 29-82 (105)
152 KOG4530 Predicted flavoprotein 53.9 14 0.00031 35.6 3.4 54 156-210 83-136 (199)
153 cd05563 PTS_IIB_ascorbate PTS_ 53.8 33 0.00072 29.1 5.6 40 106-145 1-40 (86)
154 PRK10310 PTS system galactitol 53.3 25 0.00055 30.8 4.8 29 105-133 3-31 (94)
155 COG1182 AcpD Acyl carrier prot 53.3 2.6E+02 0.0056 28.3 13.4 127 104-231 1-171 (202)
156 PF08021 FAD_binding_9: Sidero 50.9 9.9 0.00021 34.9 1.9 54 488-556 64-117 (117)
157 TIGR00853 pts-lac PTS system, 43.3 43 0.00093 29.5 4.7 30 104-134 3-32 (95)
158 cd02067 B12-binding B12 bindin 42.1 2.5E+02 0.0054 25.2 9.8 108 109-236 2-110 (119)
159 PRK09622 porA pyruvate flavodo 40.5 2.6E+02 0.0056 31.5 11.5 108 104-221 268-381 (407)
160 PF08357 SEFIR: SEFIR domain; 40.2 69 0.0015 30.1 6.0 64 105-168 1-67 (150)
161 PRK15083 PTS system mannitol-s 39.2 1.2E+02 0.0026 36.4 8.9 39 104-143 378-416 (639)
162 cd00133 PTS_IIB PTS_IIB: subun 37.4 55 0.0012 26.7 4.3 28 106-133 1-28 (84)
163 COG3414 SgaB Phosphotransferas 36.5 96 0.0021 27.3 5.7 58 104-170 1-58 (93)
164 TIGR02667 moaB_proteo molybden 36.1 29 0.00062 33.8 2.7 57 195-251 2-58 (163)
165 PRK05907 hypothetical protein; 35.0 4.5E+02 0.0097 28.4 11.9 126 106-260 19-151 (311)
166 PRK09590 celB cellobiose phosp 34.0 68 0.0015 28.8 4.5 30 104-134 1-30 (104)
167 cd05564 PTS_IIB_chitobiose_lic 34.0 72 0.0016 28.0 4.6 28 106-134 1-28 (96)
168 PRK09548 PTS system ascorbate- 33.7 1.4E+02 0.0031 35.2 8.1 44 103-146 505-548 (602)
169 PF03908 Sec20: Sec20; InterP 33.5 40 0.00088 29.4 2.9 18 59-76 74-91 (92)
170 cd05567 PTS_IIB_mannitol PTS_I 32.5 77 0.0017 27.1 4.5 29 105-133 1-29 (87)
171 COG2185 Sbm Methylmalonyl-CoA 32.2 2.7E+02 0.0059 26.6 8.4 109 106-236 14-123 (143)
172 PF00970 FAD_binding_6: Oxidor 29.6 1.3E+02 0.0028 25.9 5.5 38 317-359 2-41 (99)
173 PF06283 ThuA: Trehalose utili 28.5 3.6E+02 0.0078 27.1 9.4 74 106-187 1-79 (217)
174 PF02878 PGM_PMM_I: Phosphoglu 27.5 2E+02 0.0043 26.7 6.8 62 104-170 40-101 (137)
175 KOG4723 Uncharacterized conser 27.4 94 0.002 31.4 4.5 115 594-714 17-139 (248)
176 cd00578 L-fuc_L-ara-isomerases 26.9 5.9E+02 0.013 28.8 11.7 129 106-254 2-151 (452)
177 PF04954 SIP: Siderophore-inte 26.6 2E+02 0.0044 26.1 6.5 97 565-683 3-101 (119)
178 PF02302 PTS_IIB: PTS system, 26.6 2.1E+02 0.0046 24.1 6.3 28 106-133 1-28 (90)
179 cd05568 PTS_IIB_bgl_like PTS_I 26.1 37 0.00081 28.4 1.4 27 106-132 2-28 (85)
180 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.1 2.1E+02 0.0047 26.4 6.8 70 107-187 17-86 (153)
181 cd01075 NAD_bind_Leu_Phe_Val_D 26.0 1.1E+02 0.0023 30.8 4.9 33 192-232 23-55 (200)
182 PRK13608 diacylglycerol glucos 25.8 1.1E+02 0.0024 33.9 5.5 42 103-144 4-46 (391)
183 cd06200 SiR_like1 Cytochrome p 25.3 1.2E+02 0.0026 31.3 5.3 36 325-360 8-44 (245)
184 PRK05928 hemD uroporphyrinogen 24.4 3.7E+02 0.0081 27.0 8.8 56 155-232 48-103 (249)
185 cd02071 MM_CoA_mut_B12_BD meth 23.8 5E+02 0.011 23.5 8.6 109 109-237 2-111 (122)
186 cd00758 MoCF_BD MoCF_BD: molyb 23.4 54 0.0012 30.5 2.0 53 199-251 1-55 (133)
187 PF09651 Cas_APE2256: CRISPR-a 22.8 1.3E+02 0.0029 28.2 4.6 34 107-142 24-57 (136)
188 TIGR01917 gly_red_sel_B glycin 22.1 6.4E+02 0.014 28.6 10.2 97 116-262 319-420 (431)
189 PF04689 S1FA: DNA binding pro 22.0 1.3E+02 0.0028 24.6 3.5 24 55-78 18-42 (69)
190 PF09921 DUF2153: Uncharacteri 21.9 1.4E+02 0.003 27.7 4.2 49 660-709 54-105 (126)
191 PRK05752 uroporphyrinogen-III 20.7 5.2E+02 0.011 26.7 9.0 57 155-234 51-107 (255)
192 PRK08811 uroporphyrinogen-III 20.6 5.2E+02 0.011 27.1 9.0 55 154-233 64-118 (266)
193 cd06212 monooxygenase_like The 20.6 1.8E+02 0.0038 29.4 5.4 40 316-360 2-42 (232)
194 PHA03164 hypothetical protein; 20.4 2.7E+02 0.0059 23.5 5.2 25 43-67 45-73 (88)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=7e-113 Score=903.98 Aligned_cols=567 Identities=34% Similarity=0.599 Sum_probs=494.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+||||||||+.+|+.|.+++.+++ ..+.|+.+|+|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~--~~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRG--LQCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhcc--CCceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 47899999999999999999999999887 4467899999995 678999999999999999999999999999
Q ss_pred HHH-hccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHh
Q 005109 185 WFT-EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 185 ~L~-~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 261 (714)
+|. ++.+...|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||+. +++.+|..|+..+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 998 5566778999999999999999999999999999999999999999999999965 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCcc--ccCCCCeeeEEeeeecccCCCCCCceeEEEE
Q 005109 262 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV--YDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 339 (714)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 339 (714)
+............+ ....+.|++-....... . ..+..+ ...+-| ++++.|+++|+.++.++++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~~------~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKASD------F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhcccccc------C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 87511110001111 11223344332222110 0 001111 111222 78999999999999999999999
Q ss_pred EecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccC
Q 005109 340 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 418 (714)
Q Consensus 340 di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~ 418 (714)
+|.++.+.|+|||++.|+|.|+++.|++++..+||++++...+.....+. .+..+-+| |+|+++++.+|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999998877665433221 12222578 9999999999999999
Q ss_pred CccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCC
Q 005109 419 SPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 498 (714)
Q Consensus 419 ~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsS 498 (714)
.|++.||..|++|++|+.|||+|++++|++|.|+|.+|+.+++||++|+|++|++.+.|++++++. +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 5999999999999
Q ss_pred CCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhH
Q 005109 499 SPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPF 578 (714)
Q Consensus 499 sp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPf 578 (714)
+|..+ .++++|++|.++|.....+.|+||+||+++.+|+ .+++.+++|++.+|.+..+|+||||+|||||||
T Consensus 376 ~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPf 447 (574)
T KOG1159|consen 376 SPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPF 447 (574)
T ss_pred CCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccH
Confidence 99854 4999999999999999999999999999999987 589999999999999889999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcc
Q 005109 579 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 658 (714)
Q Consensus 579 rs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i 658 (714)
||++++|..++. .+..||||||++++||+|.+||.+..+.+. +.|||||+++|.||||+|++.++.+|+++
T Consensus 448 Ra~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 448 RALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred HHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 999999997553 456999999999999999999999877653 45999999999999999999999999998
Q ss_pred -cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 659 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 659 -~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+.||+|||||++..|.++|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 519 ~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 519 DNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 589999999999999999999999999999999777776 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.8e-110 Score=938.76 Aligned_cols=597 Identities=47% Similarity=0.786 Sum_probs=512.3
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCch
Q 005109 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (714)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdn 178 (714)
.....+.+++|+|||||||||.+|+.+.+++ +++....+++.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 3456778999999999999999999999999 7775444556666666532 456899999999999999999
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~ 258 (714)
++.|.+||.... ......++|+|||+||++|+|||++|+.+|++|.++||+|++.+|+||++.+.|++|..|++.+|++
T Consensus 112 ~~~f~~~l~~~~-~~~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~~ 190 (645)
T KOG1158|consen 112 AEAFYQSLTELK-VLPSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLPE 190 (645)
T ss_pred HHHHHHHHhhcc-CchhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhHh
Confidence 999999998221 2234558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCccccccceEEEEecC-CCcccCcc-ccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeE
Q 005109 259 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN-ADASVGEK-SWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 336 (714)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~h 336 (714)
+++.+..++.. .++.......++...... ........ .....+...+++..+|+.+.++.+++|+++.++|+|+|
T Consensus 191 ~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~ 267 (645)
T KOG1158|consen 191 LCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCIH 267 (645)
T ss_pred hhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEEE
Confidence 99887644221 111111111111111100 00000000 00011223567889999999999999999899999999
Q ss_pred EEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhccc
Q 005109 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYAD 415 (714)
Q Consensus 337 le~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~D 415 (714)
+++++.+.+++|+||||++|+|.|..+.|++++++|+++++..+.++....+++.......+.||| |||++++|+||+|
T Consensus 268 ~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ld 347 (645)
T KOG1158|consen 268 LELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYLD 347 (645)
T ss_pred EEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988887776554322112245788999 9999999999999
Q ss_pred ccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccc
Q 005109 416 LLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 495 (714)
Q Consensus 416 l~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YS 495 (714)
|+++|+|++|+.||+||+|+.||++|+.|+|++|+.+|..|+....++++|||.+||+++||+.++++. +|+++||+||
T Consensus 348 i~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~YS 426 (645)
T KOG1158|consen 348 ITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYYS 426 (645)
T ss_pred ccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Cccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888875 6999999999
Q ss_pred cCCCCCCCCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCc
Q 005109 496 ISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTG 574 (714)
Q Consensus 496 IsSsp~~~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTG 574 (714)
|||||..+++++|+++.++.+.++.| +.+.|+||+||.++.+++.+. .++.++.+.|+||.|+.+||||||+|||
T Consensus 427 IssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGTG 502 (645)
T KOG1158|consen 427 ISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGTG 502 (645)
T ss_pred cccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCCc
Confidence 99999999999999999998888775 778899999999999987632 1477788999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhcCC--CCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC-CCcccccchhhhch
Q 005109 575 LAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEKS 651 (714)
Q Consensus 575 IAPfrs~lq~~~~~~~~~~--~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~-~~k~yVq~~l~e~~ 651 (714)
|||||||+|+|..+++.+. ..+ +|||||||+++.||||++||+++.+.+.++++.+||||++ +.|.||||+|++++
T Consensus 503 iAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~ 581 (645)
T KOG1158|consen 503 IAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREYA 581 (645)
T ss_pred chhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHHH
Confidence 9999999999999876542 234 8999999999999999999999999999999999999998 78999999999999
Q ss_pred HHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 652 SDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 652 ~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++||++| .++++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 582 d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 582 DEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 9999998 56999999999777999999999999999999999999999999999999999999
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=4.4e-106 Score=922.95 Aligned_cols=539 Identities=29% Similarity=0.508 Sum_probs=468.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|||||||||.+|++|++.+.+.| ..++++++++|+. .+|.+++.+||++||||+|+|||||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHHH
Confidence 4788999999999999999999999998876 5578999999985 4688899999999999999999999999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
|+||.... ...|.+++||||||||++|++||.++|.+|++|+++||+|+++++.+| .+.+++|+.|++++|++|...
T Consensus 132 ~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D--~~~e~~~~~W~~~~~~~l~~~ 208 (600)
T PRK10953 132 HKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDAD--VEYQAAASEWRARVVDALKSR 208 (600)
T ss_pred HHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccc--cccHHHHHHHHHHHHHHHHhh
Confidence 99997322 346999999999999999999999999999999999999999998655 457999999999999999876
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEec
Q 005109 263 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342 (714)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 342 (714)
+.... ...... . . .... ......++..+|+.|+|+.|++|+.++++++|+||||||+
T Consensus 209 ~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~ 265 (600)
T PRK10953 209 APAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLG 265 (600)
T ss_pred cCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecC
Confidence 53110 000000 0 0 0000 0001245678999999999999999999999999999999
Q ss_pred CCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccH
Q 005109 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 422 (714)
Q Consensus 343 ~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k 422 (714)
+++++|+|||||+|||+|+++.|+++|++||+++++.+.+. + .++|++++|++|+||+.+ ++
T Consensus 266 ~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~-~~ 327 (600)
T PRK10953 266 DSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN-TA 327 (600)
T ss_pred CCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-cH
Confidence 99999999999999999999999999999999999987664 1 156999999999999876 67
Q ss_pred HHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC
Q 005109 423 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 502 (714)
Q Consensus 423 ~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~ 502 (714)
.+|+.+++++.+++ |+.|. ++++.+.+|+. +++++|||++|| .+++++||++. +|+++||+|||||+|..
T Consensus 328 ~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~ 397 (600)
T PRK10953 328 NIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAE 397 (600)
T ss_pred HHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCC
Confidence 89999999998754 44443 25667777764 699999999998 68999999975 58999999999999987
Q ss_pred CCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHH
Q 005109 503 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRG 580 (714)
Q Consensus 503 ~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs 580 (714)
.+++++|+|++|.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+|||||||||
T Consensus 398 ~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 470 (600)
T PRK10953 398 VENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRA 470 (600)
T ss_pred CCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHH
Confidence 789999999988765 3578889999999986 55554 68888875 589999888899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccC
Q 005109 581 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE 660 (714)
Q Consensus 581 ~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~ 660 (714)
|+|++...+. .+++|||||||++..||+|++||++|.+.|.+++++++|||++.+|+||||+|.++++++|+++.+
T Consensus 471 flq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ 546 (600)
T PRK10953 471 FMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWIND 546 (600)
T ss_pred HHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 9999987543 378999999999777999999999999999999999999999988999999999999999999988
Q ss_pred CcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 661 GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 661 ~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 547 ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 547 GAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999778999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.6e-103 Score=906.33 Aligned_cols=538 Identities=35% Similarity=0.610 Sum_probs=469.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++|+|+|||||||||.+|+.|++++.++| ..+++.++++|+. .++.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 678999999999999999999999999876 5578999999985 45888999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
+||.... ...|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|++|.+++|+.|...+
T Consensus 130 ~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~~ 206 (597)
T TIGR01931 130 KFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQA 206 (597)
T ss_pred HHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhhc
Confidence 9997322 3469999999999999999999999999999999999999999987765 578999999999999998654
Q ss_pred CCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecC
Q 005109 264 RDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG 343 (714)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~ 343 (714)
... ... +.+.+. .... ......|+..+|+.++|+.|++|+..+++++|+||||||++
T Consensus 207 ~~~-----~~~------~~~~~~--~~~~----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~ 263 (597)
T TIGR01931 207 KGS-----AST------PSLSET--PARS----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEG 263 (597)
T ss_pred cCc-----cCC------Ccceec--cccc----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCC
Confidence 211 001 111110 0000 01123456789999999999999999999999999999999
Q ss_pred CCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHH
Q 005109 344 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKS 423 (714)
Q Consensus 344 ~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~ 423 (714)
++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+. ++|.
T Consensus 264 ~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~~~ 325 (597)
T TIGR01931 264 SGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NTKP 325 (597)
T ss_pred CCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CCHH
Confidence 9999999999999999999999999999999999987663 1 15799999999999998 5799
Q ss_pred HHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC
Q 005109 424 ALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA 503 (714)
Q Consensus 424 ~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~ 503 (714)
+|+.||++++|++.++ +.+ +++.|.+|+. +++++|+|.+|| +++++|||+++ +|+++||+|||||+|...
T Consensus 326 ~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~ 395 (597)
T TIGR01931 326 LLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEV 395 (597)
T ss_pred HHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccC
Confidence 9999999999986544 332 5778888885 789999999999 89999999975 588999999999999877
Q ss_pred CCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHHH
Q 005109 504 PSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGF 581 (714)
Q Consensus 504 ~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~ 581 (714)
+++++|+|++|.+. ..|+.+.|.||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||
T Consensus 396 ~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsf 468 (597)
T TIGR01931 396 GDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAF 468 (597)
T ss_pred CCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHH
Confidence 88999999988664 4678899999999998 66654 58888864 5799998888999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCC
Q 005109 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG 661 (714)
Q Consensus 582 lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~ 661 (714)
+|++...+. .++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++..++++++.++
T Consensus 469 lq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~ 544 (597)
T TIGR01931 469 MQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEG 544 (597)
T ss_pred HHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCC
Confidence 999987643 2789999999996569999999999999999989999999987789999999999999999988788
Q ss_pred cEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 662 AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 662 ~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 545 a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 545 AHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred cEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999995489999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-100 Score=862.12 Aligned_cols=541 Identities=38% Similarity=0.663 Sum_probs=482.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
...+++|+||||||||+.+|+.+++++.+.| ..+.+.++++|+.. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 5788999999999999999999999999887 56789999999963 344447899999999999999999999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
+++|... +...|.+++|+||||||++|+.||.++|.++++|.++||+++.+++++|+. +++++...|...+++.+...
T Consensus 118 ~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~~ 195 (587)
T COG0369 118 HEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKSK 195 (587)
T ss_pred HHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHhh
Confidence 9999832 346799999999999999999999999999999999999999999999876 78999999999999999876
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEec
Q 005109 263 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342 (714)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 342 (714)
....... ...++. .+. . ...+....++.+.+..|++|+...++|+|+|++||++
T Consensus 196 ~~~~~~~--~~~~~~--~~~---------------------~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~ 249 (587)
T COG0369 196 FPGQEAA--PAQVAT--SPQ---------------------S-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDLP 249 (587)
T ss_pred ccccccc--cccccc--hhc---------------------c-cccccccCcceeEeeccccCCccccCceeEEEEeecc
Confidence 6422110 000100 000 0 1223345677899999999999999999999999999
Q ss_pred CCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccH
Q 005109 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 422 (714)
Q Consensus 343 ~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k 422 (714)
+++++|+|||+|+|||+|+++.|+++|..||+++++.++++ + .+.++.++|.+|+|+++.| |
T Consensus 250 ~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~-~ 311 (587)
T COG0369 250 DSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP-K 311 (587)
T ss_pred cccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-H
Confidence 99999999999999999999999999999999998666332 1 1679999999999999999 9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC
Q 005109 423 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 502 (714)
Q Consensus 423 ~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~ 502 (714)
+++..|+.|+.+++.++.|+.++ ...|..|.. +++++|+|++||++++|++++++. +|++.||+|||||+|..
T Consensus 312 ~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~ 384 (587)
T COG0369 312 SLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGV 384 (587)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCC
Confidence 99999999999999999999886 455666664 899999999999999999999975 59999999999999999
Q ss_pred CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC-CccCCCCCCCCeEEEecCCcchhHHHH
Q 005109 503 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGF 581 (714)
Q Consensus 503 ~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~-~F~lp~~~~~piImIa~GTGIAPfrs~ 581 (714)
++++||+||.+|.+.+. ++.+.|+||+||+++...++ .++++++.+ +|++|.++.+||||||+||||||||||
T Consensus 385 ~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRaf 458 (587)
T COG0369 385 SPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAF 458 (587)
T ss_pred CCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHH
Confidence 99999999999988777 56899999999999988443 689999876 899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCC
Q 005109 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG 661 (714)
Q Consensus 582 lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~ 661 (714)
+|+|...+.. |++|||||||+.+.||+|++||++|.+.|.++++.+|||||+.+|.||||+|+++++.||+++.++
T Consensus 459 vq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~g 534 (587)
T COG0369 459 VQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEG 534 (587)
T ss_pred HHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCC
Confidence 9999987754 689999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 662 AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 662 ~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++|||||+++.|+++|+++|.+|+.+.++++.++|++++++|++++||++|||
T Consensus 535 a~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 535 AHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999997799999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.6e-78 Score=673.10 Aligned_cols=395 Identities=53% Similarity=0.934 Sum_probs=357.0
Q ss_pred CCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCC-CCcEEEEeeCCCCC
Q 005109 311 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 389 (714)
Q Consensus 311 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 389 (714)
..+|+.|+|+.+++|+.+ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357899999999999988 9999999999999889999999999999999999999999999999 899988874332
Q ss_pred CCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 005109 390 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 468 (714)
Q Consensus 390 ~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 468 (714)
....+.|+| |||++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++ +|+++|.+|+...+++++|+|
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL 153 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVL 153 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHH
Confidence 123456899 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhCCCCC---CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCC-----
Q 005109 469 SEFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK----- 540 (714)
Q Consensus 469 ~~fps~~---~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~----- 540 (714)
.+||+++ +|++.|++. +|+++||+|||||+|..++++|+|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 154 ~~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 232 (416)
T cd06204 154 QDFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPP 232 (416)
T ss_pred HhCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccc
Confidence 9999999 999999975 5999999999999998788999999999988888889999999999999874110
Q ss_pred ----------CCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcc
Q 005109 541 ----------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD 610 (714)
Q Consensus 541 ----------~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D 610 (714)
...++.++++++.|.|.+|.++.+|+||||+||||||||||++++....+.+...++++||||||+++.|
T Consensus 233 ~~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d 312 (416)
T cd06204 233 TPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDED 312 (416)
T ss_pred cccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcc
Confidence 0012368899999999999887899999999999999999999987654333335799999999998559
Q ss_pred cchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005109 611 YIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 690 (714)
Q Consensus 611 ~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 690 (714)
++|++||++|.+.+.+++++++|||++..++|||++|.++.+.+++++.++++||+|||+..|+++|.++|.+|++++++
T Consensus 313 ~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 313 FIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred cchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence 99999999999988888999999998878999999999988888888877899999999434999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEecC
Q 005109 691 LDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 691 ~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++.++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=5.2e-77 Score=657.89 Aligned_cols=381 Identities=39% Similarity=0.709 Sum_probs=343.0
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCC--CCcEEEEeeCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 396 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~~~~ 396 (714)
|..+++||++++.++++||+||+++++++|+|||||+|+|+|+++.|++++++||++ +|+.+.++.....+. .+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999998889999999999999999999999999999999 889888875222111 1235
Q ss_pred CCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 005109 397 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 475 (714)
Q Consensus 397 ~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~ 475 (714)
++.+|| |+|++++|++|+||+++|+|++|+.||+||+|++||++|++|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 778899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccC-----CCCCCCCCceeeEE
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 550 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~-----~g~~~~~~~~v~i~ 550 (714)
+|++.+++. +|+++||+|||||+|..++++++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999975 599999999999999866799999998875422 699999999987 554 57888
Q ss_pred Ee-cCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhh--cCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 551 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 551 v~-~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~--~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
++ .|.|.+|.+ +.+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||++|++.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 85 567999876 67999999999999999999999976431 123358999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005109 627 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702 (714)
Q Consensus 627 ~~l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 702 (714)
+++++||||++. .++||||+|.++.+.+++++ .++++||||||++.|+++|+++|.+|+++.++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 58999999999999999887 57899999999778999999999999999999999999999999
Q ss_pred HHHCCCeEEecC
Q 005109 703 LQMTGRYLRDVW 714 (714)
Q Consensus 703 l~~~gRy~~DvW 714 (714)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=1.6e-76 Score=655.21 Aligned_cols=386 Identities=41% Similarity=0.738 Sum_probs=340.9
Q ss_pred EeeeecccCCCCCCceeEEEEEecC-CCCccCCCCeeEEeccCCHHHHHHHHHHhCC--CCCcEEEEeeCCCCCCCCC--
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHTDKEDGTPLG-- 393 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l--~~d~~~~i~~~~~~~~~~~-- 393 (714)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|+|+|+++.|+++|++||+ +.++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 6999999999999999999999999999998 4577788775433211100
Q ss_pred CCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 005109 394 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 472 (714)
Q Consensus 394 ~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp 472 (714)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|+.|++ +++.|.+|+...+++++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 012334565 99999999999999999999999999999999999999999996 889999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 473 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 473 s~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
++++|++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.++
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999975 59999999999999987789999999988765543 4567899999999988866 57788
Q ss_pred Eec-CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhh----hcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC
Q 005109 551 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625 (714)
Q Consensus 551 v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~----~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~ 625 (714)
++. +.|.+|.++.+|+||||+||||||||||+|++.... ..+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 764 589999888899999999999999999999986542 122345899999999999559999999999999999
Q ss_pred CcEEEEEEecCCC-CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005109 626 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 703 (714)
Q Consensus 626 ~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 703 (714)
++++++||||++. .++||||+|.++++.+++++ .++++|||||| +.|+++|+++|.+|+++.++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9899999999864 68999999999999999987 67999999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEecC
Q 005109 704 QMTGRYLRDVW 714 (714)
Q Consensus 704 ~~~gRy~~DvW 714 (714)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 9
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=9.8e-77 Score=653.38 Aligned_cols=378 Identities=43% Similarity=0.785 Sum_probs=346.7
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 398 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 398 (714)
|+.+++|+.++++++|+||+|++++++++|+|||||+|+|+|+++.|++++++||+++++.+.++... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999888999999999999999999999999999999999999887433 12346
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 005109 399 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 477 (714)
Q Consensus 399 ~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p 477 (714)
.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|..|++.++.+.|.++ .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6889 999999999999999999999999999999999999999999999999999888 789999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCcc
Q 005109 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 557 (714)
Q Consensus 478 ~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~ 557 (714)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.+|+ .+.+.++.|.|.
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999999866789999999998888888889999999999987765 588999999999
Q ss_pred CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005109 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 637 (714)
Q Consensus 558 lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~ 637 (714)
+|.+..+|+||||+||||||||||+|++......+...++++||||||+++.|++|++||++|.+.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999998654333445899999999999559999999999999999889999999998
Q ss_pred CCcccccchhhhchHHHHhcccCC-cEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 638 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 638 ~~k~yVq~~l~e~~~~l~~~i~~~-~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
..++||||++.++.+.+++++.++ ++|||||| +. |+++|+++|.+++++.+++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888887555 49999999 55 999999999999999999999999999999999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.4e-73 Score=628.73 Aligned_cols=375 Identities=36% Similarity=0.618 Sum_probs=334.5
Q ss_pred EEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCC
Q 005109 318 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397 (714)
Q Consensus 318 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~ 397 (714)
+|+.+++|+.++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 36789999999999999999999975 8999999999999999999999999999999999998875221 23
Q ss_pred CCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 005109 398 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 476 (714)
Q Consensus 398 ~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~ 476 (714)
+.|+| |+|++++|++|+||+++|+|.+|+.||.||+|+++|++|..++ ++.|.+++...++|++|+|.+||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 45778 9999999999999999999999999999999999999999885 467999999999999999999999999
Q ss_pred ChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCCceeeEEE--ec
Q 005109 477 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQ 553 (714)
Q Consensus 477 p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~~~v~i~v--~~ 553 (714)
|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||.++.+|+ .+.+.+ +.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 999999865 99999999999999766789999999887666554 567899999999887766 456654 45
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+ +++++|
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 7899998778999999999999999999999976543333457899999999995599999999999986654 899999
Q ss_pred ecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Q 005109 634 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 708 (714)
Q Consensus 634 Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gR 708 (714)
||++.. ++|||++|.++.+.+++++.++++|||||| ++|+++|.++|.+|+.+.+ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998754 899999999988888887778899999999 6799999999999999999 9999999999999999999
Q ss_pred eEEecC
Q 005109 709 YLRDVW 714 (714)
Q Consensus 709 y~~DvW 714 (714)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=3.2e-71 Score=604.41 Aligned_cols=355 Identities=40% Similarity=0.670 Sum_probs=317.0
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 398 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 398 (714)
|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6789999999999999999999998899999999999999999999999999999999887531
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CCC
Q 005109 399 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SAK 475 (714)
Q Consensus 399 ~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp--s~~ 475 (714)
++| |+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|+++|.+ .++++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 245 89999999999999987 45568999999999888775 68888764 589999999999 999
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec-C
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-S 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~-~ 554 (714)
+|+|||++. +|+++||+|||||+|..++++++++|+++.+.+. ++.+.|+||+||+++...|+ .+.++++. +
T Consensus 132 ~~~gq~l~l-~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~ 204 (360)
T cd06199 132 LTAEELLDL-LRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPNP 204 (360)
T ss_pred CCHHHHHHh-CcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecCC
Confidence 999999975 5889999999999998777899999998866553 46688999999998763333 57888765 5
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
.|++|.++.+|+||||+||||||||||+|++..... .++++||||||++..|++|++||++|++.+.+++++++||
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 799998878999999999999999999999876532 3789999999998559999999999999998889999999
Q ss_pred cCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 635 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 635 r~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
|++..++||||+|.++.+.+++++.++++||||||++.|+++|+++|.+|+++.++++.++|++|+++|+++|||++|||
T Consensus 281 r~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 281 RDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred cCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99888999999999998899888877899999999448999999999999999999999999999999999999999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.8e-70 Score=616.85 Aligned_cols=370 Identities=38% Similarity=0.654 Sum_probs=326.0
Q ss_pred CCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEee
Q 005109 305 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 384 (714)
Q Consensus 305 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 384 (714)
+...++.++|+.++|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|+++|++||++++..+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4445677899999999999999999999999999999989999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCH
Q 005109 385 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 464 (714)
Q Consensus 385 ~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l 464 (714)
.++|++++|++|+||.++| +.+|+.|+.++++++ +++|+.|++....+.. ....++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 1579999999999999876 788999999988766 7888888754333221 124689
Q ss_pred HHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCC
Q 005109 465 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSND 543 (714)
Q Consensus 465 ~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~ 543 (714)
+|+|++||++++|+++|++. +|+++||+|||||+|..++++++|+|++|.+.+ .++.+.|+||+||++ +.+|+
T Consensus 291 ldvL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd---- 364 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT---- 364 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC----
Confidence 99999999999999999975 599999999999999877899999999887653 567789999999984 55554
Q ss_pred CceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 544 CSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 544 ~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.++++. ++|++|.++.+|+||||+||||||||||+|++...+. .++++||||||+...|++|++||++|.+
T Consensus 365 --~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 365 --RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred --EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 57787754 3499998878999999999999999999999876542 2789999999887679999999999999
Q ss_pred cCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005109 623 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702 (714)
Q Consensus 623 ~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 702 (714)
.+.+++++++|||++..|+||||+|.++..++++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~ 518 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAE 518 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99988899999999888999999999998999998888899999999667889999999999999999999999999999
Q ss_pred HHHCCCeEEecC
Q 005109 703 LQMTGRYLRDVW 714 (714)
Q Consensus 703 l~~~gRy~~DvW 714 (714)
|+++|||++|||
T Consensus 519 l~~~gRY~~Dvw 530 (530)
T PRK06214 519 LKKAGRYQADVY 530 (530)
T ss_pred HHHCCCEEEecC
Confidence 999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=5.2e-47 Score=386.54 Aligned_cols=217 Identities=45% Similarity=0.812 Sum_probs=186.0
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999997553
Q ss_pred CCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 005109 388 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 466 (714)
Q Consensus 388 ~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~d 466 (714)
. .....||| |||++++|++|+||+++|+|.+|+.||+|++|+++|++|++|++.+|++.|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 24567899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchh
Q 005109 467 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 531 (714)
Q Consensus 467 vl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~ 531 (714)
+|.+||++++|+++|++. +|+++||+|||||||..++++++|||++|.+.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999975 5999999999999999999999999999999889999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=7.4e-39 Score=347.09 Aligned_cols=273 Identities=24% Similarity=0.456 Sum_probs=225.4
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..++|+.++|+.|.+++..+....++||+|+..+ .+.|++|.+++|.|+..
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~-------------------------- 136 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGI-------------------------- 136 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCc--------------------------
Confidence 367789999999999999988888899999998754 78999999999865410
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
|.. |
T Consensus 137 ---------------------------~~~-------------------------------g------------------ 140 (367)
T PLN03115 137 ---------------------------DKN-------------------------------G------------------ 140 (367)
T ss_pred ---------------------------CCC-------------------------------C------------------
Confidence 000 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||||+|.. .+++++|+|+.+.+.+..|....|+||+||+++.+|+
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd----- 196 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 196 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC-----
Confidence 1134699999999853 2568999998876666667778899999999988876
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.+.+|.|.|. +|.++.+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|++
T Consensus 197 -~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 197 -EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred -EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 477888888765 56566789999999999999999999876543211 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
... .+++++++||++. .++|||++|.++.+++++++ ..+++||+||| ++|+++|.++|.++....| + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 754 7899999999864 57899999999988998877 45789999999 9999999999999998875 3 57
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++++++|+++|||+.|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=2.6e-36 Score=316.83 Aligned_cols=233 Identities=48% Similarity=0.875 Sum_probs=198.4
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|. ..+|+|||+|+|....+.++|+|+.+......+..+.|.+|+||+++++|+ .+.+.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45679998765443 468999999999755689999998876655555667899999999988765 57788888
Q ss_pred C-CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 554 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 554 ~-~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
| .|.++.+..+|+||||+|||||||++|+++++.....+...++++||||+|+.+.|++|.+||++|++.+.+++++++
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~ 184 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVA 184 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEE
Confidence 8 899987777899999999999999999999886421122237899999999993399999999999998888899999
Q ss_pred EecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005109 633 FSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710 (714)
Q Consensus 633 ~Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 710 (714)
+||+... ++||++.+.+..+.+++.+.+++.||+||| ++ |+++|.++|.++++++++++.++|++++++|++.|||+
T Consensus 185 ~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (267)
T cd06182 185 FSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYV 263 (267)
T ss_pred EccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeE
Confidence 9997653 789999998777777776666779999999 78 99999999999999999999999999999999999999
Q ss_pred EecC
Q 005109 711 RDVW 714 (714)
Q Consensus 711 ~DvW 714 (714)
+|+|
T Consensus 264 ~~~~ 267 (267)
T cd06182 264 EDVW 267 (267)
T ss_pred EecC
Confidence 9999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=4e-33 Score=296.04 Aligned_cols=189 Identities=34% Similarity=0.679 Sum_probs=159.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE-ecCCccCCCCCCCCeEEE
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v-~~~~F~lp~~~~~piImI 569 (714)
+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++.+|+ .+.+.+ +.+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 4789988863 24699999999987766 466665 46789876 446899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+|||||||+||++++.. .++++||||+|+++.|++|++||++|.+++.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999999888888899999975 48999999887
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+.+ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77666666667899999999 8999999999999998764 2 3889999999999998
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=4.4e-34 Score=296.51 Aligned_cols=211 Identities=32% Similarity=0.501 Sum_probs=174.0
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccC-CCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-PMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~-~g~~~~~~~~v~i~v~ 552 (714)
..-+|||+.+..+. ..+|+|||||+|. ++.++|+|+.+.. +. .+.|.||+||++.. +|+ .+.+.+|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~--~~~G~~S~~L~~~~~~Gd------~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--AD--GGLGLGSGWLTRHAPIGA------SVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CC--CCCeeechhhhhCCCCCC------EEEEEec
Confidence 34579998765442 5789999999985 4789998876522 11 23499999999864 544 5778876
Q ss_pred -cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 553 -QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 553 -~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
++.|.+|. ..+|+||||+|||||||+||++++...+ .++++||||+|+.+.|++|.+||++|.+.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 45788875 5689999999999999999999987643 1578999999998448999999999999998889999
Q ss_pred EEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 710 (714)
++||++..++||++.+.++.+.+++++..+++||+||| + +|+++|.+.|.+++++ +.+++|+++|||+
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~ 241 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYR 241 (245)
T ss_pred EEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeE
Confidence 99998777899999998887777666556789999999 7 9999999999999975 3489999999999
Q ss_pred EecC
Q 005109 711 RDVW 714 (714)
Q Consensus 711 ~DvW 714 (714)
+|+|
T Consensus 242 ~d~~ 245 (245)
T cd06200 242 RDVY 245 (245)
T ss_pred EecC
Confidence 9999
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=302.76 Aligned_cols=213 Identities=30% Similarity=0.486 Sum_probs=171.3
Q ss_pred cccccccCCCCCCC---CCeEEEEEEEEEecCCC-C--c-cccCccchhhcccCCCCCCCCCceeeEEEecCCccC-CC-
Q 005109 490 QPRYYSISSSPRVA---PSRIHVTCALVYEKTPT-G--R-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA- 560 (714)
Q Consensus 490 ~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~-g--r-~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~l-p~- 560 (714)
..|+|||||+|... ..+|+|+|+.+.+..+. + . ...|.+|+||+++.+|+ .+.|..|.|.|.+ |.
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~ 153 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEE 153 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCC
Confidence 47999999999532 23799999876443332 1 1 26799999999977765 5778888898876 43
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEEEEecCCC
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 638 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~a~Sr~~~ 638 (714)
+..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++|++.+. .++++.++||+..
T Consensus 154 ~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~ 232 (307)
T PLN03116 154 DPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQK 232 (307)
T ss_pred CCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCc
Confidence 4568999999999999999999988764321 11236899999999997 9999999999998875 6789999999754
Q ss_pred ----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 639 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 639 ----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++||++.|.+..+.++..+..++.||+||| ++|++++.+.|.+++++.| + +|+++++.|+++|||++|||
T Consensus 233 ~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 233 NKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---cHHHHHHHHHHcCceEEecC
Confidence 3679999888776666655556789999999 9999999999999988764 4 36789999999999999999
No 19
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.4e-32 Score=304.53 Aligned_cols=270 Identities=24% Similarity=0.418 Sum_probs=214.3
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..+.|..++|+.+++++.......++||.|+..+....|+||.++.|.++...
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------- 190 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------- 190 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC-------------------------
Confidence 3667889999999999998776677899999998765688999988877543100
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
. .|
T Consensus 191 ----------------------------~-------------------------------~g------------------ 193 (411)
T TIGR03224 191 ----------------------------A-------------------------------SG------------------ 193 (411)
T ss_pred ----------------------------c-------------------------------CC------------------
Confidence 0 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC---CCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||+|+|... .++++|+|+.+. ....|+.+.|.+|+||+++++|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC-----
Confidence 11246999999987421 147999998764 24456677899999999988876
Q ss_pred ceeeEEEecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc
Q 005109 545 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 623 (714)
Q Consensus 545 ~~v~i~v~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 623 (714)
.+.+.+|.|. |.+|..+.+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||+++.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 5778888776 6677555689999999999999999999987643211 237999999999998 99999999999865
Q ss_pred CCCcEEEEEEecCCC-CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005109 624 GALSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 701 (714)
Q Consensus 624 g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~ 701 (714)
. .++++++||+.. .++|||+.+.+....+++++. .+..||+||| ++|+++|.+.|.++..+.+ +. ++++++
T Consensus 326 ~--~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~ 398 (411)
T TIGR03224 326 F--IDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEP 398 (411)
T ss_pred C--ceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHH
Confidence 4 357779998643 689999999988777777663 4689999999 9999999999999997653 33 567999
Q ss_pred HHHHCCCeEEecC
Q 005109 702 NLQMTGRYLRDVW 714 (714)
Q Consensus 702 ~l~~~gRy~~DvW 714 (714)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
No 20
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=4.2e-33 Score=295.65 Aligned_cols=225 Identities=30% Similarity=0.483 Sum_probs=179.5
Q ss_pred ChHHHHHHhcCC--------CcccccccCCCCCC---CCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCC
Q 005109 477 PLGVFFAAIVPR--------LQPRYYSISSSPRV---APSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 477 p~~~~l~~i~p~--------l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
-+|||+.+..|. ..+|+|||||+|.. +++.++|+|+.+...++.+ ..+.|.+|+||+++.+|+
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 116 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD----- 116 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC-----
Confidence 458887654332 24799999999863 2468999998875544332 455699999999987765
Q ss_pred ceeeEEEecCCccCC-CCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~lp-~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.+..+.|.|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|.+||+++++
T Consensus 117 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 117 -DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred -EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 57788888887654 34567999999999999999999998765211 11236899999999998 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
+.. .+++++++||++. .++||++.+.+....+++.+. .+..||+||| ++|+++|.+.|.+++. +..+|
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~ 268 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAW 268 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHH
Confidence 653 6789999999753 578999999887777776664 4569999999 8999999999999987 23679
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++++++|+++|||.+|+|
T Consensus 269 ~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 269 EEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHcCCeEEecC
Confidence 999999999999999999
No 21
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=3.5e-33 Score=266.50 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=127.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|.|+|||||||||.+|++|++.+.+.+ ..++++++.+ .+++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g--~~~~~~~~~~--------~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAG--FSTETLHGPL--------LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcC--CceEEeccCC--------HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998876 4466776643 245788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC--chhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~--~e~~f~~W~~~l~~~L 259 (714)
+||... ...|++++||||||||++|++||.+++.++++|+++||+++.|++++|++.. .|++|++|.+.++..|
T Consensus 71 ~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999732 2469999999999999999999999999999999999999999999998753 6899999999988653
No 22
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=6.6e-33 Score=265.53 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=122.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++|.|+|||||||||.+|++|++++.+.+ ..+.++ ......+ ..+. ..+.+||++||||+|+||+|+..|++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g--~~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAG--FEAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCC--Cceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 57999999999999999999999998765 233332 2222211 1111 23789999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCC--CCchhhHHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 260 (714)
||.... ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .++|++|.+|++.+|++|.
T Consensus 73 ~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 997321 2369999999999999999 8999999999999999999999999999987 4689999999999998774
No 23
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=9.2e-33 Score=264.49 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|.|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998776 5578888876542 12345789999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L 259 (714)
++|... ...|++++|||||||||+|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999832 236999999999999999999999999999999999999999999999865 478999999999 7654
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=1.3e-26 Score=220.42 Aligned_cols=137 Identities=39% Similarity=0.629 Sum_probs=121.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHH-HHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~-~F~~~L~ 187 (714)
|+|+|+|||||++|+.|++++.+++ ..++++++++++.+ ..++..++.++|++||||+|+||+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999876 56899999998842 246889999999999999999999998 6666776
Q ss_pred hc---cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHH
Q 005109 188 EK---EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 251 (714)
Q Consensus 188 ~~---~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W 251 (714)
.. .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 21 23456899999999999999988999999999999999999999999999977 789999999
No 25
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.92 E-value=1.3e-24 Score=221.27 Aligned_cols=188 Identities=27% Similarity=0.458 Sum_probs=145.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.+..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34579998765553 57899999999863 47899988754 3599999999987665 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+..+|+||||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++++.+..+++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 88998766566789999999999999999999987753 126899999999997 9999999999998877889999
Q ss_pred EEecCCCCcccccchhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++|++....+.++.+.......... ...+..+|+||| ++|++.+.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99987654444443332111111111 135789999999 89999999998764
No 26
>PRK07308 flavodoxin; Validated
Probab=99.92 E-value=3.7e-24 Score=204.68 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=118.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.|+++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 4567888887764 34778899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC--chhhHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 255 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~--~e~~f~~W~~~l 255 (714)
++|. ...+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|...|
T Consensus 73 ~~l~----~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLA----DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHh----cCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9997 4568999999999999999999999999999999999999988777665432 223344555444
No 27
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=1.6e-24 Score=225.28 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=137.8
Q ss_pred CChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.-+|||+.+.++ . ...|+|||+|+|. .+.++++|+.+ ..|.+|+||+++.+|+ .+.+..+
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp 93 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecC
Confidence 357899754332 2 2369999999985 35788888654 4699999999887766 4677776
Q ss_pred c-CCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcEE
Q 005109 553 Q-SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 629 (714)
Q Consensus 553 ~-~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~l 629 (714)
. |.|.++.. ..+|+||||+|||||||+||++++...+. .++++||||+|+.+ |++|.+||+++++.. ..+++
T Consensus 94 ~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v 168 (248)
T PRK10926 94 AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRI 168 (248)
T ss_pred CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEE
Confidence 5 55677643 34799999999999999999999765332 26899999999997 999999999998875 35689
Q ss_pred EEEEecCCC---Ccccccchhhhch-HHHHh-cc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~---~k~yVq~~l~e~~-~~l~~-~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++||++. .+++|++.+.+.. ..... .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 999998643 2567776553321 11111 11 34689999999 89999999887653
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.91 E-value=1.9e-24 Score=229.16 Aligned_cols=179 Identities=17% Similarity=0.342 Sum_probs=137.7
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEe
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 570 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa 570 (714)
.|+|||+|+|. ..+.++|+|+.........+...|.+|+||+++.+|+ .+.|..|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 49999999986 3478999887543211111345799999999987765 577888889998864 468999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccccc
Q 005109 571 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQ 644 (714)
Q Consensus 571 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~yVq 644 (714)
+|||||||++|+++++..... ..+++||||+|+.+ |++|.+||+++++....+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987664321 25899999999997 99999999999988777788888887531 457888
Q ss_pred chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 645 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 645 ~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 7765532 11111 23578999999 99999999988764
No 29
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=2.4e-24 Score=220.43 Aligned_cols=183 Identities=20% Similarity=0.318 Sum_probs=145.8
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
+..+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.+..|.
T Consensus 25 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 25 DFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred ccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 4567999876656667999999999863 47899888643 35899999876 66655 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++++++...... ..+++|+||+|+.. |++|.+||++++++...++++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 9998876667899999999999999999999876532 26899999999997 999999999999887778888899
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 98543 45777776654311 1 24678999999 89999999988653
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.91 E-value=7.6e-24 Score=218.81 Aligned_cols=184 Identities=24% Similarity=0.355 Sum_probs=143.4
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 346789986655554 5899999999863 47899888643 4699999997 566655 5678888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+..+|+||||+|||||||++++++....+. .++++||||+|+.+ |++|.+||+++++....++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 89998876556899999999999999999999876532 26899999999997 99999999999988777788888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+||+.. .++|+++.+.+.. ....++..+|+||| ++|++++.+.|.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHF----KNDFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhc----ccccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 998642 3567776554321 10124678999999 99999999988764
No 31
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=7e-24 Score=218.35 Aligned_cols=183 Identities=17% Similarity=0.228 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhh-cccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L-~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|....|+|||+|.|. ..+.++|+|+.+ ..|..++++ .++.+|+ .+.+..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~-~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPR-EKGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCC-CCCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCC
Confidence 346789986655666789999999985 347799887643 224455555 5566655 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+|+||||+||||||++++++++..... ..+++|+||+|+.+ |.+|.+||++++++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 9998876556899999999999999999999876532 26899999999998 999999999999887778899888
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHH-HHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L-~~i 684 (714)
|+++. .++||++.+.+.. .+ ..+..+|+||| ++|+++|.+.| .+.
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 87543 4677777665431 11 13568999999 89999999888 554
No 32
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=6.9e-24 Score=218.06 Aligned_cols=185 Identities=22% Similarity=0.210 Sum_probs=142.9
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++ +.+|+ .+.|.+|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECCc
Confidence 45789987655666 6899999999863 47899888643 45899999987 45554 56788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 9888765556899999999999999999999876421 1236899999999987 999999999999887778888888
Q ss_pred ecCCC--------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~--------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+++. .++|+++.+.+.. .....+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATL----GDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhc----cCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87642 2356665544321 11124689999999 89999999888664
No 33
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.91 E-value=5e-24 Score=231.66 Aligned_cols=182 Identities=18% Similarity=0.281 Sum_probs=144.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~ 554 (714)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCce
Confidence 456899876556566899999999863 47899988743 46999999974 66655 577888899
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
.|.++....+|+||||+|||||||++|++++...+. .++++||||+|+.+ |+++.++|++|.++...++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999876667899999999999999999999886432 26899999999997 9999999999988777788999999
Q ss_pred cCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+.+ .++||++.+.+.. .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8421 4577777665431 11 14578999999 99999999988663
No 34
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.90 E-value=8.8e-24 Score=234.74 Aligned_cols=183 Identities=17% Similarity=0.256 Sum_probs=138.9
Q ss_pred ChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005109 477 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 550 (714)
Q Consensus 477 p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~ 550 (714)
.+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +.+|+ .+.+.
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~ 248 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNVGD------VLELA 248 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCCCC------EEEEE
Confidence 46888865433 1 1349999999986 3678888763 245999999987 77765 57788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++.+..+|+||||+|||||||+||++++..... .++++||||+|+.+ |++|++||+++++.+..++++
T Consensus 249 gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~ 323 (399)
T PRK13289 249 APAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAH 323 (399)
T ss_pred cCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEE
Confidence 8899999987667899999999999999999999876432 26899999999998 999999999999887777899
Q ss_pred EEEecCCCC----ccccc-chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~~----k~yVq-~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++|++... ..|++ .++.+ +.+.+.+ ..+..+|+||| ++|+++|.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 999985431 11222 22221 1223333 24789999999 99999999988653
No 35
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=9.5e-24 Score=234.90 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=142.6
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEE
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 568 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piIm 568 (714)
...|+|||+|.|.. .+.++|+|+.+......++.+.|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35799999999863 468999998765544455667899999999887766 57788889999876 35689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005109 569 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 642 (714)
Q Consensus 569 Ia~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~y 642 (714)
||+|||||||+||+++.+..... .++++||||+|+.+ |++|.+||+++++...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 99999999999999988764321 26899999999997 99999999999988888889999987532 4577
Q ss_pred ccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 643 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 877665431 11111 24579999999 99999999988654
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=1.5e-23 Score=216.06 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=143.2
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. ..+|+|||+|+|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 34679998655453 35799999999863 46888888643 35899999997 66665 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+.+ |++|.+||+++++....++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 89999876556899999999999999999999876432 26899999999987 99999999999988777889999
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+||++. .++++++.+.+. +.+ ......+|+||| ++|++++.+.|.+.
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 997532 356666655432 111 123578999999 89999999988753
No 37
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.90 E-value=1.5e-23 Score=215.18 Aligned_cols=180 Identities=23% Similarity=0.352 Sum_probs=142.4
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 345789986655544 4799999999863 7888887643 46999999998 66655 5677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.. .+|++|||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++.+....++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 888887644 489999999999999999999987643 236899999999987 99999999999988777888899
Q ss_pred EecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+||+.. .++|+++.+.+.. +...+..+|+||| ++|+++|++.|.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998643 4568887665431 1124578999999 8999999999875
No 38
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.90 E-value=1.6e-23 Score=215.26 Aligned_cols=185 Identities=19% Similarity=0.312 Sum_probs=137.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.++ ...+|+|||+|.|. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 457888854333 22479999999986 47899888643 3589999998 577765 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.+++....++||||+||||||+++++++...... ..+++||||+|+.+ |++|.+||+++++....+++++
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 899999876666899999999999999999999876432 26899999999997 9999999999998777778999
Q ss_pred EEecCCCCcccccchhhhchHHHHhccc--CCcEEEEecCchhhHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~--~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++||++....+.+++..........++. .+..+|+||| ++|++++.+.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 9998653322222211111111111221 3579999999 8999999988865
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.90 E-value=1.7e-23 Score=232.50 Aligned_cols=181 Identities=18% Similarity=0.333 Sum_probs=139.8
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEE
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 568 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piIm 568 (714)
...|+|||+|+|.. .+.++|+|+.+.......+.+.|.+|+||+++.+|+ .+.+..|.|.|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999963 478999998653222223456799999999987766 577888999998764 4689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005109 569 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 642 (714)
Q Consensus 569 Ia~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~y 642 (714)
||+|||||||++|+++.+..... ..+++||||+|+++ |++|.+||+++.+....+++++++|+++. .+++
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 99999999999999987754321 26899999999997 99999999999988888888989887532 3567
Q ss_pred ccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 643 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.+.+.. +.+.. ..++.||+||| ++|++++.+.|.+.
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 877664321 11111 24678999999 99999999888653
No 40
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=2.1e-23 Score=215.86 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=143.4
Q ss_pred CChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 476 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 476 ~p~~~~l~~i~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
..+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECc
Confidence 45688876544432 4699999999863 6888887643 4599999999887766 46777
Q ss_pred EecCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc-CCCcE
Q 005109 551 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-g~~~~ 628 (714)
.+.|.|.++.. ..++++|||+|||||||++++++...... .++++||||+|+.+ |++|.+||+++++. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER----FDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC----CCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 78889998765 45899999999999999999999875432 26899999999997 99999999999877 55678
Q ss_pred EEEEEecCCCC---cccccchhhhc-hHHHHhc--ccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 629 LIVAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 629 l~~a~Sr~~~~---k~yVq~~l~e~-~~~l~~~--i~~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
+++++||++.. ++|+++.+.+. ....... ...+..||+||| ++|++++.+.|.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 224 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKG 224 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88888987643 57888766521 1111111 124679999999 899999999887653
No 41
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.90 E-value=2.2e-23 Score=226.48 Aligned_cols=181 Identities=19% Similarity=0.327 Sum_probs=143.4
Q ss_pred CChHHHHHHhcCCCc-ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~-pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|... .|+|||+|+|. ..+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~-~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPN-ATNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCC-CCCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 457899866556443 79999999986 347899988753 46899999974 66665 57788889
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++. ..+|+||||+|||||||++|++++...+. .++++||||+|+++ |++|.+||++|++....++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9999864 35899999999999999999999876432 26899999999997 999999999999888888999988
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+.+. .++||++.+.+.. +......||+||| ++|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~-----l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ-----LRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh-----cCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 4678887765421 1123468999999 99999999998654
No 42
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=3.2e-23 Score=211.82 Aligned_cols=182 Identities=22% Similarity=0.304 Sum_probs=143.8
Q ss_pred CChHHHHHHhcCCC--cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.. .+|.+|+||.+ +.+|+ .+.|.+|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 35689987655544 3799999999863 46788888642 35999999998 77765 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+...++||||+|||||||+++++++.... ...+++|+|++|+.+ |++|.+||+++.+....++++++
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8999887655689999999999999999999987643 226899999999997 99999999999988777788888
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++. .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 887542 46788776654311 1 24689999999 99999999988653
No 43
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.90 E-value=3e-23 Score=213.41 Aligned_cols=183 Identities=22% Similarity=0.347 Sum_probs=142.2
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 345789986554543 5799999999863 47899888642 45899999986 66665 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++....+++||||+|||||||++++++...... .++++|+||+|+.. |++|.+||+++++....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 89998876556899999999999999999999886532 26899999999997 99999999999987777788888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. ..+++++.+.+.. .+ .++..+|+||| ++|++++.+.|.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 998542 2456665443321 11 14678999999 99999999988754
No 44
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.90 E-value=3.3e-23 Score=224.64 Aligned_cols=184 Identities=16% Similarity=0.277 Sum_probs=139.9
Q ss_pred CChHHHHHHhcCC--CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~--l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
.-+|||+.+-+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.+..|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 3578987654442 23599999999863 46799988743 5699999997 576665 5677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++....+|+||||+|||||||+||+++...... ..+++||||+|+.+ |++|.+||+++++....+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 89999876667899999999999999999998866432 26899999999997 99999999999987766677777
Q ss_pred EecCCCCcccccchhhhchHHHHhccc--CCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~~k~yVq~~l~e~~~~l~~~i~--~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++++ .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66543 355666666432 1222221 3578999999 99999999988764
No 45
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.89 E-value=3.4e-23 Score=220.15 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=137.2
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
..+|||+.+.+|....|+|||+|+|. .++.++|+|+. .|.+|+||.++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~-~~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPT-RKGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCC-CCCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 45799986555655569999999986 34789988863 288999999887765 4677788787
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++....+|+||||+|||||||++|+++++.... ..++++||||+|+.+ |++|++||+++++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 66654445799999999999999999999876431 126899999999997 9999999999988777778899999
Q ss_pred cCCCC---------------cccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~~---------------k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333222211 11 24578999999 99999999988764
No 46
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.89 E-value=8.5e-23 Score=208.56 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=138.9
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~ 554 (714)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCcC
Confidence 457999876556667899999999863 36788887643 35999999998 46655 577888888
Q ss_pred CccCCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~F~lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
.|.+.+ ...+|++|||+|||||||+++++++..... .++++||||+|+.+ |++|.+||+++++....++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 887653 456799999999999999999999876432 26899999999998 999999999999876667888888
Q ss_pred ecCCCCcc-cccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGPTKE-YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~~k~-yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++..... +..+.+.+. +. .+..+..+|+||| ++|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88654321 111122211 11 1235689999999 99999999998764
No 47
>PRK06703 flavodoxin; Provisional
Probab=99.89 E-value=2.9e-22 Score=192.70 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=122.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+.+|+.|++++.+.+ ..+++.++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 568999999999999999999999998765 5578888887664 34788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC---CchhhHHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~---~~e~~f~~W~~~l~~~L~ 260 (714)
++|. ...+++++++|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...++
T Consensus 73 ~~l~----~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 73 EDLE----NIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred HHHh----cCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 9996 345789999999999999999999999999999999999887766554433 234466788888766554
Q ss_pred h
Q 005109 261 N 261 (714)
Q Consensus 261 ~ 261 (714)
+
T Consensus 149 ~ 149 (151)
T PRK06703 149 Q 149 (151)
T ss_pred h
Confidence 3
No 48
>PRK05713 hypothetical protein; Provisional
Probab=99.88 E-value=1e-22 Score=218.89 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=132.8
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC-
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~- 554 (714)
..+|||+.+..+....|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd------~v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGD------LLRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCC------EEEEccCCCC
Confidence 457899865445556899999999863 47889888643 4699999998887776 455655665
Q ss_pred CccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
.|.++.+ ..+|+||||+|||||||+|++++..+.+. .++++|+||+|+.+ |++|.+||++|++....++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666544 46899999999999999999999876542 26899999999998 999999999999877667777766
Q ss_pred ecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++ ++++.+.+. . ....+..+|+||| ++|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAEL----R-LVSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhc----c-CCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 53 233332211 1 1124578999999 99999999998653
No 49
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=1.9e-22 Score=206.90 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=137.7
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCC
Confidence 34688886554543 4899999999863 47899888642 45889999965 56654 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc-CCCcEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVA 632 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-g~~~~l~~a 632 (714)
|.|.++. ..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++++. ...++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAGT----KRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9998864 35789999999999999999999876432 26799999999997 99999999999865 356678888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. .++++++.+.+. +..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 887532 235666655432 135689999999 89999998888653
No 50
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.88 E-value=2.2e-22 Score=208.99 Aligned_cols=180 Identities=20% Similarity=0.306 Sum_probs=138.2
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.++ . ...|+|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i 99 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEV 99 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 456888765443 2 35799999999863 4788877532 35999999998 77765 4678
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++.+.+..+++
T Consensus 100 ~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 174 (247)
T cd06184 100 SAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLKL 174 (247)
T ss_pred EcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEE
Confidence 88889999886556899999999999999999999876422 26899999999997 89999999999887677789
Q ss_pred EEEEecCCCC--------cccccchhhhchHHHHh-cccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGPT--------KEYVQHKMMEKSSDIWN-MLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~~--------k~yVq~~l~e~~~~l~~-~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++|++... .++++.. .+.+ ....+..||+||| ++|++++.+.|.+.
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9999986432 2333321 1222 2245789999999 89999999988653
No 51
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.88 E-value=2.1e-22 Score=206.79 Aligned_cols=185 Identities=18% Similarity=0.295 Sum_probs=136.9
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+| ....|+|||+|.|. ..+.++|+|+.. ..|.+|.||. ++.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~g 91 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASG 91 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEc
Confidence 457888865444 22369999999986 346799888643 3589999997 576665 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.....++||||+|||||||++++++....+. .++++||||+|+.+ |++|.+||+++.++...+++++
T Consensus 92 P~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (231)
T cd06215 92 PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLHL 166 (231)
T ss_pred CcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEE
Confidence 889999875556899999999999999999999876432 26799999999997 9999999999998766678888
Q ss_pred EEecCCCC-cccccchhhhchHHHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPT-KEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~-k~yVq~~l~e~~~~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.+++... ..+.++++.+. .+.+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 88875432 22223333221 112222 13468999999 99999999888653
No 52
>PRK12359 flavodoxin FldB; Provisional
Probab=99.88 E-value=6.3e-22 Score=193.12 Aligned_cols=144 Identities=19% Similarity=0.347 Sum_probs=120.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|++.|+|+|+|||||.+|++|++.+.. ..++++++++++. +++..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 579999999999999999999998732 2368888888775 457899999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCC-ch-hHHHHHHHHHHHHHHHcCCccccc-----------------------ccccc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLGD 239 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~~~~-----------------------~g~gD 239 (714)
.|. ...|+|+++||||+||+ .| ++||.+++.++++|.+.||+.+.. +.+.+
T Consensus 71 ~l~----~~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~ 146 (172)
T PRK12359 71 QLD----DLNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDE 146 (172)
T ss_pred HHh----hCCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcC
Confidence 986 45699999999999998 58 899999999999999999985421 22222
Q ss_pred CCCC--chhhHHHHHHHHHHHHHhh
Q 005109 240 DDQC--IEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 240 ~~~~--~e~~f~~W~~~l~~~L~~~ 262 (714)
+++. +++++++|.++|.+++..+
T Consensus 147 ~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 147 VNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhh
Confidence 3332 6889999999998887643
No 53
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.88 E-value=2.3e-22 Score=209.75 Aligned_cols=181 Identities=21% Similarity=0.331 Sum_probs=140.2
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
+..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||.++.+|+ .+.+..|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcC
Confidence 4457899876556555699999999863 4789988853 388999999877665 567888877
Q ss_pred C-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
. |.++....+|+||||+||||||++++++++.+... ..++++|||+.|+.+ |++|++||+++.+. ..+++.+++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 7 66554356899999999999999999999987532 126899999999998 99999999999987 556788888
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. ..+++++.+.+.. ....+..||+||| +.|++++.+.|.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 87542 3466766554431 1125689999999 99999999988764
No 54
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.88 E-value=2e-22 Score=208.81 Aligned_cols=181 Identities=23% Similarity=0.357 Sum_probs=138.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+| ...+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +.+|+ .+.+..
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEEC
Confidence 356899865443 234799999998852247899988743 35889999986 66665 567888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+..+++||||+||||||+++++++..... ..++++||||+|+.+ |.+|.+||+++.+++..+++++
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88999998765689999999999999999999987643 226899999999997 9999999999987777778888
Q ss_pred EEecCCCCcccccchhhhchHHHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.+|++ ..++++...+. .+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 186 ~~s~~-~~~g~~~~~~l------~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~ 232 (243)
T cd06216 186 LYTRE-ELDGRLSAAHL------DAVVPDLADRQVYACGP-PGFLDAAEELLEAA 232 (243)
T ss_pred EEcCC-ccCCCCCHHHH------HHhccCcccCeEEEECC-HHHHHHHHHHHHHC
Confidence 88876 23455543222 1121 23579999999 89999999988764
No 55
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=4.5e-22 Score=202.65 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=132.1
Q ss_pred CCChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+ ...|..|.||.++.+|+ .+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~--------~~~g~~s~~l~~l~~G~------~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY--------PDHDGVTEQLGRLQPGD------TLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc--------CCCCcHhHHHHhCCCCC------EEEEE
Confidence 35678988654442 3579999999986 37899888743 11366799999988876 47788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++ .|+||||+|||||||+++++++..... ..+++|+||+|+.+ |++|.+||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 888988753 579999999999999999999886432 25789999999997 9999999999852 3567
Q ss_pred EEEecCCCCcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||++. ..|.++++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 78888653 3455555532 1222333 23578999999 89999999988654
No 56
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.87 E-value=7.7e-22 Score=215.63 Aligned_cols=187 Identities=19% Similarity=0.332 Sum_probs=137.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.+.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 3457999865443 22369999999984 47899988754 3589999997 566655 56777
Q ss_pred EecCCccCCCCC--CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-Cc
Q 005109 551 VRQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LS 627 (714)
Q Consensus 551 v~~~~F~lp~~~--~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~ 627 (714)
.|.|.|.++.+. .+++||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 788999886542 3789999999999999999999876432 26899999999997 9999999999987654 46
Q ss_pred EEEEEEecCCCCcccccchhhh-chH-HHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGPTKEYVQHKMME-KSS-DIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~~k~yVq~~l~e-~~~-~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.++|++.....+.+.++.. ... .+.++. .....+|+||| ++|++++++.|.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7888899865432233333311 111 111121 23468999999 99999999999765
No 57
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.87 E-value=7.7e-22 Score=203.08 Aligned_cols=183 Identities=21% Similarity=0.330 Sum_probs=137.2
Q ss_pred CChHHHHHHhcC--CC--cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005109 476 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 550 (714)
Q Consensus 476 ~p~~~~l~~i~p--~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~ 550 (714)
..+|||+.+.+| .- ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 346899865544 21 2499999999863 46899988643 35889999986 55654 57788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++....++++|||+||||||+++++++...... .++++|+||+|+.+ |.+|.+||.++.++...++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 8888898765446899999999999999999999876532 26899999999997 999999999999876667888
Q ss_pred EEEecCCC-----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||+.. .++++...+.+. +... ..+..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88898621 234443332211 1111 25689999999 99999999988764
No 58
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.87 E-value=1.2e-21 Score=202.48 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=137.7
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ...+|+|||+|.|.. +.++|.|+.+ ..|.+|.||. ++.+|+ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 4567999876544 236799999998863 3788887643 4589999997 566655 57788
Q ss_pred EecCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcE
Q 005109 551 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~ 628 (714)
.|.|.|.++++ ...++||||+|||||||+++++++..... .++++||||+|+.. |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 88899988765 57899999999999999999999876432 26899999999997 9999999999986653 557
Q ss_pred EEEEEecCCCCcccccchhhhc-hHHHH-hcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~~k~yVq~~l~e~-~~~l~-~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+..++|+++....+.++++.+. ..... +++ .++..||+||| +.|+++|.+.|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7778887654322222333221 11111 111 34679999999 89999999988654
No 59
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.86 E-value=8.5e-22 Score=211.69 Aligned_cols=185 Identities=11% Similarity=0.149 Sum_probs=130.3
Q ss_pred CCChHHHHHHhcC-C-----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p-~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~ 548 (714)
...+|||+....+ . ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EE
Confidence 3457888764323 1 23699999999963 47899998753 56999999999877763 44
Q ss_pred EEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-
Q 005109 549 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA- 625 (714)
Q Consensus 549 i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~- 625 (714)
+..+.+.|.++++..+|+||||+|||||||++|+++.+..+.. .....+++|+||+|+.+ |++|++||+++++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 5444344444444457999999999999999999998765321 11225899999999997 9999999999988654
Q ss_pred CcEEEEEEecCCC------CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHH
Q 005109 626 LSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 680 (714)
Q Consensus 626 ~~~l~~a~Sr~~~------~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~ 680 (714)
.+++++++|++.. ..++|.+.+... +..... ....+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5788888886421 235555443221 111111 2357999999 9999999554
No 60
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.86 E-value=9e-22 Score=200.23 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=132.6
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+. .|.+|++|. ++.+|+ .+.+..
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~g 84 (216)
T cd06198 23 HRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVEG 84 (216)
T ss_pred cCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEEC
Confidence 4578998655453 56899999999863 3689988863 277899999 676665 567888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.. .++++|||+||||||+++++++...... .++++|+||+|+.+ |++|.+||+++.+.. .+++++
T Consensus 85 P~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~ 157 (216)
T cd06198 85 PYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHV 157 (216)
T ss_pred CCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEE
Confidence 8899998765 6899999999999999999999876432 26899999999998 999999999998876 556776
Q ss_pred EEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..++.+. .......+.+ .. ....+..+|+||| ++|++++++.|.+.
T Consensus 158 ~~~~~~~-~~~~~~~~~~----~~-~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 158 IDSPSDG-RLTLEQLVRA----LV-PDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EeCCCCc-ccchhhhhhh----cC-CCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 6654332 1111111100 01 0134679999999 89999999988763
No 61
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.86 E-value=1.2e-21 Score=205.40 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=132.2
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
.-+|||+.+-+|...+|+|||++.+ .++++|+|+. .|.+|+||.++.+|+ .+.|..|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGD------KLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCC------EEEEECCCCC
Confidence 3579998765676567999999975 3678888752 289999999887766 4667777776
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++....+|+||||+|||||||+|++++...... ..++++||||+|+.+ |++|++||++|.+.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88776556899999999999999999999875321 235899999999997 999999999998753 3455566
Q ss_pred cCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+... ..+++++.+.+.. ... ..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 5432 2456654433310 000 14678999999 99999999988654
No 62
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.86 E-value=1.7e-21 Score=202.34 Aligned_cols=171 Identities=20% Similarity=0.306 Sum_probs=130.0
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.|..
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEe
Confidence 4568888665453 35799999998852 47888887532 77899999988765 577888
Q ss_pred ecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 552 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 552 ~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
|.|. |.++. ...++||||+|||||||+++++++...+ ++++||||+|+.+ |.+|++||+++.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 8775 77764 5689999999999999999999887622 6899999999998 9999999998842 223
Q ss_pred EEEecCC--CCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~--~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+ +++++ ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+.
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~ 202 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAER 202 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 2 23332 2457888766554221 14689999999 89999999999764
No 63
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.86 E-value=2e-21 Score=204.59 Aligned_cols=141 Identities=31% Similarity=0.580 Sum_probs=121.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
+-.|||+||||||+++|+.+++++++.. ..++++|++ |.+.| ++ +++++|+++|+-+|+|| +..|+.|
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~~ 115 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQW 115 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHHH
Confidence 3489999999999999999999998864 447889998 77543 55 77888888888899999 8999999
Q ss_pred HHh-----ccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHH
Q 005109 186 FTE-----KEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 186 L~~-----~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L 259 (714)
|.. ..+...|++++||||||||+.| ++||..|+++|+++..|||+|++|+|+||.+. ..+++|+..+...|
T Consensus 116 L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~L 192 (601)
T KOG1160|consen 116 LEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAETL 192 (601)
T ss_pred HHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHHH
Confidence 981 1245679999999999999997 99999999999999999999999999999883 44569999998887
Q ss_pred Hh
Q 005109 260 DN 261 (714)
Q Consensus 260 ~~ 261 (714)
+.
T Consensus 193 k~ 194 (601)
T KOG1160|consen 193 KD 194 (601)
T ss_pred cC
Confidence 64
No 64
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.86 E-value=3.4e-21 Score=197.92 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=138.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.+..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 34678988655453 45799999998863 46788887642 3599999999887765 467778
Q ss_pred ecCCccCCCCCC-CCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcEE
Q 005109 552 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 629 (714)
Q Consensus 552 ~~~~F~lp~~~~-~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~l 629 (714)
+.|.|.++.+.. .++||||+||||||+++++++...... ...+++||||+|+.+ |.+|.+||+++.+.. ..+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 889998876554 789999999999999999999876421 136899999999997 999999999998762 45577
Q ss_pred EEEEecCCCC----cccccchhhhchHHHHhc-ccCCcEEEEecCchhhHH-HHHHHHHH
Q 005109 630 IVAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~----k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~-~V~~~L~~ 683 (714)
++++++.+.. .+++++.+.... ... ...+..+|+||| ++|++ ++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 8888875432 456654432211 110 124678999999 99999 99988864
No 65
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.86 E-value=4.1e-21 Score=200.58 Aligned_cols=180 Identities=18% Similarity=0.300 Sum_probs=132.7
Q ss_pred CChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++. ..|..|+||+ ++++|+ .+.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEec
Confidence 45788887655533 5799999999974 35788877643 3499999999 677765 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++..+..|++||++|||||||+||+++....+ . .+++|+|++|+.+ |..|++| +.+.++......+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 89999998766779999999999999999999987753 2 5799999999998 9999999 88887766433333
Q ss_pred EEecCCCCcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
.+...+...+|..- ..+...+. .+..+|+||| .+|+++|+..|.++.
T Consensus 172 ~~~~~~~~~g~~~~------~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g 219 (266)
T COG1018 172 LYTERGKLQGRIDV------SRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALG 219 (266)
T ss_pred EEEecCCccccccH------HHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 33321112222221 11111222 2389999999 899999999987664
No 66
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.85 E-value=2.9e-21 Score=202.36 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=131.7
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
.-+|||+.+.+|...+|+|||+|.+ .++++|+|+. .|.+|++|.++.+|+ .+.|..|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCC
Confidence 4578998766676678999999853 4789988853 289999999887765 4677788776
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++.+..+|++|||+|||||||+++++++..... ..++++||||+|+.+ |++|.+||++|++.. .+...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 87776556899999999999999999998765321 226899999999998 999999999998753 2344455
Q ss_pred cCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++.. ..+++++.+.+.. +.+ ..+.++|+||| ++|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4322 3356655443310 001 13578999999 99999999988764
No 67
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.85 E-value=6e-21 Score=203.80 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=134.6
Q ss_pred CChHHHHHHhcCC-------CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceee
Q 005109 476 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548 (714)
Q Consensus 476 ~p~~~~l~~i~p~-------l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~ 548 (714)
..+|||+.+.++. ...|+||++|+|. +++.++|+|+.+...........|.+|+||.++.+|+ .+.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEE
Confidence 4578887654432 2469999999985 4578999987652111000123599999998887766 567
Q ss_pred EEEecCCccCCCC---------------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccch
Q 005109 549 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613 (714)
Q Consensus 549 i~v~~~~F~lp~~---------------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 613 (714)
+..|.|.|.++.+ ...|++|||+|||||||++++++...... ...+++|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhH
Confidence 8888888865422 12589999999999999999999876421 125799999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhhchHHHHhc-----ccCCcEEEEecCchhhHH-HHHHHHH
Q 005109 614 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNM-----LSEGAYLYVCGDAKSMAR-DVHRTLH 682 (714)
Q Consensus 614 ~dEL~~~~~~g~~~~l~~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~-----i~~~~~iyvCGpa~~M~~-~V~~~L~ 682 (714)
.+||++++ ....++++.+.+++.. ..++|+..+.+.. +... ...+..+|+||| ++|++ .+.+.|.
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~ 288 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLE 288 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--cCCccccccccCCeEEEEECC-HHHHHHHHHHHHH
Confidence 99999865 4445678888887422 3466665443321 1100 013478999999 99998 5677775
Q ss_pred HH
Q 005109 683 TI 684 (714)
Q Consensus 683 ~i 684 (714)
+.
T Consensus 289 ~~ 290 (300)
T PTZ00319 289 KI 290 (300)
T ss_pred Hc
Confidence 43
No 68
>PRK09271 flavodoxin; Provisional
Probab=99.84 E-value=1.8e-20 Score=181.97 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+|+|+|+|+|||||++|+.|++.+...+ ..+.+.++++.+.++. ..++.+++.++|++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 58999999999999999999999998876 4566777766553221 2345678999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCC---CchhhHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~---~~e~~f~~W~~~l~~~L 259 (714)
+|. ....++++++|||+||+.| ++||.+++.++++|... .+....+... ...+.+.+|..++++.+
T Consensus 77 ~l~----~~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 77 ELA----ETIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred HHH----HHhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 997 2234678999999999999 89999999999999753 2333333221 12478899999988877
No 69
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.84 E-value=1.7e-20 Score=189.96 Aligned_cols=172 Identities=20% Similarity=0.272 Sum_probs=127.7
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCcccc-Cccchhhccc-CCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHK-GLCSTWMKNS-LPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~-G~~S~~L~~~-~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+ .. +.+|.||.+. .+|+ .+.+..|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~Gd------~v~i~gP 88 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRVGD------ELEVSAP 88 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCCCC------EEEEcCC
Confidence 3467999876556667899999999863 47899888643 12 3479999764 4454 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++++ .+|+||||+||||||+++++++..... .+++||||+|+.+ |.+|.+||+++. .. .+.+.
T Consensus 89 ~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~ 156 (211)
T cd06185 89 RNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLH 156 (211)
T ss_pred ccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEE
Confidence 899988654 579999999999999999999886522 5799999999987 899999999987 22 34455
Q ss_pred EecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.. ...++++.+.. +..+..+|+||| +.|++++.+.|.+.
T Consensus 157 ~~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 157 FDDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred ECCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66532 22333322221 224679999999 89999999988664
No 70
>PRK06756 flavodoxin; Provisional
Probab=99.84 E-value=5.7e-20 Score=176.13 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=114.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|+|+|+|+|||||++|+.|++++.+.+ ..++++|+.+... ..++.+++.+||++||||+|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 478999999999999999999999998765 4567788765432 245788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 252 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~ 252 (714)
+.+. ...++++++++||+|++.|.|||.+.+.+.+.|.++|++.+.+.....-. ..++|++.|.
T Consensus 74 ~~l~----~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMD----SIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHh----cCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 9985 34589999999999999999999999999999999999998876554332 2366665554
No 71
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.83 E-value=1.4e-20 Score=192.35 Aligned_cols=147 Identities=19% Similarity=0.302 Sum_probs=109.3
Q ss_pred ccccccCCCCCCC--CCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCC---CCCCC
Q 005109 491 PRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 565 (714)
Q Consensus 491 pR~YSIsSsp~~~--~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~---~~~~p 565 (714)
.|+|||||+|..+ .++++|+|+. .|.+|+||.+...... ..+..+.+..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 4999999999743 2678887753 2899999988654210 0112678888899999875 34578
Q ss_pred eEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccc
Q 005109 566 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 645 (714)
Q Consensus 566 iImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~ 645 (714)
+||||+|||||||+++++++..... ...+++|+||+|+.+ |.+|.+||+++... ...+.. ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 9999999999999999998875321 236899999999998 99999999876531 111111 11
Q ss_pred hhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 646 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 646 ~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 116999999 9999999888764
No 72
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.83 E-value=1.2e-19 Score=177.59 Aligned_cols=140 Identities=27% Similarity=0.431 Sum_probs=115.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
+|.|+|+|+|||||++|++|++.+.. ..++++|+.+.+. .++.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 48999999999999999999999863 2367888877653 3577899999999999999999999999998
Q ss_pred HHhccCCCccCCceEEEEeccCC-ch-hHHHHHHHHHHHHHHHcCCcccccc----------------------ccccCC
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDDD 241 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~~~~~----------------------g~gD~~ 241 (714)
|. ...++++++++||+||+ .| ++||.+.+.+++.|++.|++.+... .++.++
T Consensus 71 l~----~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~ 146 (167)
T TIGR01752 71 LE----ELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDN 146 (167)
T ss_pred hh----cCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCCC
Confidence 85 45688999999999998 47 6999999999999999999977643 112222
Q ss_pred C--CchhhHHHHHHHHHHHH
Q 005109 242 Q--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 ~--~~e~~f~~W~~~l~~~L 259 (714)
+ -.++.+..|.++|.+++
T Consensus 147 ~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 147 QPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred chhhhHHHHHHHHHHHHHhh
Confidence 2 25778899998887654
No 73
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.83 E-value=2.8e-20 Score=193.79 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=127.7
Q ss_pred CCChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEc
Confidence 346789986554543 58999999998 3788988763 288999999887765 577888
Q ss_pred ecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 552 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 552 ~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
|.|. |.++. ..+|+||||+|||||||++++++....+ .+++|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 8775 88764 4579999999999999999999987532 4789999999997 9999999998431 22
Q ss_pred EEEecCC--CCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~--~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+. ++++ ..++||++.+.+.. ....+||+||| +.|++++.+.|.+.
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 22 2333 24578887665431 23468999999 99999999988763
No 74
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.82 E-value=7.5e-20 Score=173.70 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=103.3
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE-EecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 47999999999999999999999998765 3344 4555543211 124567899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
+++. .++++|+|||+||+.| ++||.++++++++|.+++..--+....++ ....+.+..|.+++
T Consensus 75 ~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 9985 2679999999999999 79999999999999765211111111111 12356678998875
No 75
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=7.4e-20 Score=190.61 Aligned_cols=177 Identities=22% Similarity=0.313 Sum_probs=141.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
...+|||+.+..|....|+|||+|.+.. .+.++|.+++. ..|.+|.+++.+.+++ .+.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCC
Confidence 3678999988878888999999999873 46666666543 4599999999998776 467888888
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
++.+.++..+|+++||+|||+||+++++++....+ ...+++++||.|++. |.++.+||+++... +++++.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 87777666788999999999999999999988743 236899999999998 99999999999875 4555555
Q ss_pred cCCC--Ccccc-cchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~--~k~yV-q~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++. .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+-
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~ 214 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEY 214 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhc
Confidence 332 57888 666654311 14689999999 99999999888764
No 76
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.81 E-value=2.5e-19 Score=169.29 Aligned_cols=120 Identities=24% Similarity=0.329 Sum_probs=105.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F~~~ 185 (714)
|+|+|+|+||||+++|+.|++.+...+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 579999999999999999999998765 5678888887764 3577899999999999999999 999999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
|. ...+++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+
T Consensus 73 l~----~~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~ 121 (140)
T TIGR01753 73 LE----DIDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVD 121 (140)
T ss_pred hh----hCCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeee
Confidence 96 33578999999999999998 999999999999999999998754433
No 77
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=1.1e-19 Score=187.34 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=123.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
..-+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||.++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 34579998765565567999999997 578887752 288999999977765 567778877
Q ss_pred C-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
+ |.++ .+|+||||+|||||||++++++.... ++++||||+|+.+ |++|.+||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 7 8775 57999999999999999999987652 5799999999997 99999999972 1 233332
Q ss_pred ecC-CCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SRE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~-~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.. ....+++++.+.+.. ......||+||| ++|++++.+.|.+.
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 211 113467766544321 123468999999 99999999998764
No 78
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.81 E-value=6.8e-20 Score=194.09 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=125.5
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
.-+|||+.+-++. ..+|+|||+|++. +.+.++|+|+.+ |..|++|.++.+|+ .+ .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~-~~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDR-EKGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcC-CCCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcCC
Confidence 3578998654443 3468999999875 347899887642 88999999887776 46 588888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|+|..... .+|+||||+|+||||+++++++....+ .+++||||+|+.+ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 88655433 579999999999999999999876532 4799999999997 99999999987642 222 2
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.++. .+++|++.+.+. .........||+||| ++|+++|.+.|.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~----~~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL----LESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHH----hhcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 33332 456777655432 111112457999999 99999999988654
No 79
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.81 E-value=1.3e-19 Score=187.94 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=125.7
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ....|+|||+|.|.. .++++|+|+. .|..|+||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEcc
Confidence 356888865443 445799999999853 4788887753 388999999887765 5677788
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|+|.+..+..++++|||+|||||||++++++....+ .+++||||+|+.+ |.+|.+||+++. . ..+.
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 8877655444679999999999999999999987532 5899999999998 999999998872 1 2223
Q ss_pred EecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 633 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 633 ~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
.++++. ..+++++... ... ...+..+|+||| ++|++++++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 344432 3345544311 111 123468999999 999999999998764
No 80
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.81 E-value=1.2e-19 Score=182.59 Aligned_cols=184 Identities=18% Similarity=0.329 Sum_probs=147.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEe
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 570 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa 570 (714)
-|.||+||-|.+ .+.|.+-|++-..+......+.|.||+|+.++++|+ ++.|.+|.|.|... +.++|+|+|+
T Consensus 211 ~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 211 IRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 489999999974 478888777653333344678899999999999987 57899999998865 4579999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC------ccccc
Q 005109 571 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQ 644 (714)
Q Consensus 571 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~------k~yVq 644 (714)
||.|.||+||.+-+.+.+... .+++.+.||+|+.. +.+|++|.++++++.++|+.++|+|.+.++ .+++.
T Consensus 283 GGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 283 GGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHH
Confidence 999999999999888876644 37899999999998 999999999999999999999999987553 23444
Q ss_pred chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhC
Q 005109 645 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQG 689 (714)
Q Consensus 645 ~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~ 689 (714)
..+.++ .+.++- .++..+|+||| +-|..+|.++|.....+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCcccc
Confidence 444443 223332 56889999999 8898899888888765543
No 81
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.80 E-value=2e-19 Score=187.11 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=124.7
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
..+|||+.+.++ ....|+|||+|.|. +.++++|+|+. .|..|.+|.++.+|+ .+ .+..|.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~-~~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP~ 88 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDP-EKGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGPL 88 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcC-CCCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecCC
Confidence 457898765333 23569999999875 34788888753 278899998887765 45 477788
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.+..+ .+|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 89 G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~- 154 (248)
T cd06219 89 GKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT- 154 (248)
T ss_pred CCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88765433 579999999999999999999976532 5799999999997 99999999998643 2222
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+++.. ..+|+++.+.+.. .+. .....||+||| ++|++.+.+.|.+
T Consensus 155 ~~~~~~~~~g~v~~~l~~~~---~~~-~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 TDDGSYGEKGFVTDPLKELI---ESG-EKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred eCCCCCCccccchHHHHHHH---hcc-CCccEEEEECC-HHHHHHHHHHHHH
Confidence 44322 3467766554321 111 23458999999 9999999998864
No 82
>PRK05802 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-19 Score=194.55 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=121.8
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 477 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 477 p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
-+|||+.+-.| ....|+|||+|+|. ..+.++|+|+. .|..|++|.++.+|+ .+.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~-----------~G~~T~~L~~l~~Gd------~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEI-----------RGVKTKKIAKLNKGD------EILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEe-----------cChhHHHHhcCCCCC------EEEEeCCC
Confidence 46888854433 23459999999986 35789988864 389999999888876 46677775
Q ss_pred --CCccCC---CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 554 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 554 --~~F~lp---~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
|.|.++ ....+++++||+|+||||++++++++...+ .+++||||+|+++ |.+|.+||+++..+..+++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 337653 234568999999999999999999887643 4799999999997 9999999999865422211
Q ss_pred EEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+..++. .+++|++.+.+. +...||+||| +.|++.|.+.|.+.
T Consensus 231 ----~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 231 ----LLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----ecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 112321 133444333221 2367999999 99999999988764
No 83
>PLN02252 nitrate reductase [NADPH]
Probab=99.79 E-value=4.4e-19 Score=211.74 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=137.3
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.++|||+.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+ .+.|..|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd------~V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGD------TIDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCC------EEEEecC
Confidence 467888754332 234799999999863 478999998653211111124599999999888776 4667777
Q ss_pred cCCc--------cCCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 553 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 553 ~~~F--------~lp~~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.|.| .++.. ..++++|||+|||||||++++++++.... ...+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 6665 44422 24799999999999999999999876432 236899999999997 9999999999998
Q ss_pred cC-CCcEEEEEEecCC-C----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHHH
Q 005109 623 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 684 (714)
Q Consensus 623 ~g-~~~~l~~a~Sr~~-~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~i 684 (714)
+. ..++++.++|++. . .+++|+..+.+. .......+..+|+||| ++|++. +...|.++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 75 4568888888743 1 346666544322 1111124578999999 999985 67777553
No 84
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.1e-19 Score=183.55 Aligned_cols=164 Identities=19% Similarity=0.321 Sum_probs=128.1
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecCCccCCCCCCCCe
Q 005109 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 566 (714)
Q Consensus 488 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~pi 566 (714)
++.|+|||||++.. ..+++++|+.. |..|+-|++ +++|. ++.+.+|.|.|.......+ -
T Consensus 259 ~~~~HPFTIa~s~~--~sel~FsIK~L-----------GD~Tk~l~dnLk~G~------k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHE--GSELRFSIKAL-----------GDFTKTLKDNLKVGT------KLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCC--CceEEEEehhh-----------hhhhHHHHHhccCCc------eEEEecCcceeecccCCcc-c
Confidence 45699999999976 34899988654 999999987 55543 6788899999998754333 8
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccch
Q 005109 567 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 646 (714)
Q Consensus 567 ImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~ 646 (714)
|.||||+|||||+|+++.....+.+ .++.|||.||+.+ +-+|.+||++++++.+++.+++. |.+.++|+...
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCccCHH
Confidence 9999999999999999998875433 7899999999998 99999999999998888777763 34456777543
Q ss_pred hhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 647 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 647 l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+... + ......||+||| ++|++++++.|++.
T Consensus 391 ~ler~~---~-~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYP---D-RPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhccc---c-ccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 333210 0 012348999999 99999999998864
No 85
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.77 E-value=6.1e-18 Score=162.70 Aligned_cols=143 Identities=24% Similarity=0.331 Sum_probs=114.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+|||||.+|+.|+++|.+.+ ..+. ++......+ ..+..++.++|+++|||.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~--~~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADG--FEVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCC--ceEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 689999999999999999999999998865 2232 222222211 12357899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcC--Cccccccccc--cC--CCCchhhHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELVW 256 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~~~~~g~g--D~--~~~~e~~f~~W~~~l~ 256 (714)
..+. ...+++++||+||+||+.|.. ||.+...+...|+..| +....+.... |. ....++....|.++++
T Consensus 73 ~~~~----~~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~ 148 (151)
T COG0716 73 EELE----PIDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQIL 148 (151)
T ss_pred HHhc----ccCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHH
Confidence 9996 357999999999999999977 9999999999999999 5555555444 22 3357889999999886
Q ss_pred HH
Q 005109 257 PE 258 (714)
Q Consensus 257 ~~ 258 (714)
..
T Consensus 149 ~~ 150 (151)
T COG0716 149 NE 150 (151)
T ss_pred hh
Confidence 53
No 86
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.77 E-value=1.4e-18 Score=215.27 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=136.5
Q ss_pred CChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+..+ . ...|+|||+|.|. ..+.++|+|+ ...|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCCCCE------EEEeCC
Confidence 467999965432 1 2359999999996 4577888764 235899999998888764 555543
Q ss_pred cC----------CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 553 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 553 ~~----------~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+ .|.++.+..+|+||||+|||||||++|+++.+.... .....+++||||+|+.+ |++|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 22 466666666899999999999999999998876321 01236899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.. .+++++++|++.. ..++|++.+.+. .......+..||+||| ++|++++.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 765 4788899987543 346666543322 1111124578999999 99999999988764
No 87
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.77 E-value=6.9e-18 Score=175.49 Aligned_cols=179 Identities=16% Similarity=0.257 Sum_probs=139.0
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.|.|+.+....| ..--|+||..|++.. .+.+++.|+.. .+|.+|.||.+++.|+ .+.+.+|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd------~ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGD------TVEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCC------EEEEecC
Confidence 355666544333 234799999999875 57899887643 3599999999999987 4677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 631 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~ 631 (714)
.|.|.+++...+.+.|||+|||||||..++|+.+...+ +..+++|+|++++++ |.++++||+.++++.. .++++.
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~---d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE---DTTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---CCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 89998887777899999999999999999999987543 357899999999998 9999999999999877 788888
Q ss_pred EEecCCC----CcccccchhhhchHHHHhcc---cC-CcEEEEecCchhhHHH-HHHHH
Q 005109 632 AFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTL 681 (714)
Q Consensus 632 a~Sr~~~----~k~yVq~~l~e~~~~l~~~i---~~-~~~iyvCGpa~~M~~~-V~~~L 681 (714)
+.+++.. .++||...+.. +.+ .. ...++|||| ++|... +...|
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~l 273 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNL 273 (286)
T ss_pred EEcCCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHH
Confidence 8888653 45676644332 222 12 478999999 999974 33333
No 88
>PRK09267 flavodoxin FldA; Validated
Probab=99.76 E-value=1.1e-17 Score=163.82 Aligned_cols=142 Identities=27% Similarity=0.454 Sum_probs=114.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|+|+|+|+||||+++|+.|++.+.. ..+.++|+.+... .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999863 2357888877653 35778999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc---ccc-----------------cCC
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLG-----------------DDD 241 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~---g~g-----------------D~~ 241 (714)
+.+. ...|+++++++||+||+. | ++||.+.+.+++.|.+.|++.+... |.. |.+
T Consensus 71 ~~~~----~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~ 146 (169)
T PRK09267 71 PELE----EIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDED 146 (169)
T ss_pred HHHh----cCCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCC
Confidence 9875 345889999999999985 8 8999999999999999998865431 111 111
Q ss_pred C---CchhhHHHHHHHHHHHH
Q 005109 242 Q---CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 ~---~~e~~f~~W~~~l~~~L 259 (714)
. -.++.+++|.++|.+++
T Consensus 147 ~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 147 NQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CchhhhHHHHHHHHHHHHHHh
Confidence 1 13678899999987764
No 89
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.72 E-value=1.4e-17 Score=150.40 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=81.2
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005109 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 642 (714)
Q Consensus 568 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~-~~l~~a~Sr~~~----~k~y 642 (714)
|||+|||||||+||++++.... ..++++||||+|+.+ |++|++||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 8999999999999999998763 237999999999998 99999999999987765 333333 43322 4689
Q ss_pred ccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHH
Q 005109 643 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 679 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~ 679 (714)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654333 222356899999999 999999864
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.70 E-value=3.6e-17 Score=195.57 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=128.2
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
.-+|||+.+.++. ..+|+|||+|.+. ..+.++|+|+.+ |..|++|+++.+|+ .+ .|.+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~-~~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADP-EKGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCC-CCCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCC
Confidence 4579998654443 2458999999986 347899888643 88999999988876 46 578888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|+|..... .++++|||+|+|||||++++++....+ .+++||||.|+.+ |++|.+||++|..+ ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88876533 478999999999999999999887643 4799999999997 99999999988642 2222
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+.+++ .+++|++.+.+.. ........||+||| ++|++.|.+.|.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred ECCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 34432 4678877654431 11112357999999 9999999998865
No 91
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.69 E-value=1.2e-16 Score=161.72 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+|.. +.|+|||+|+|....+.++|+|+. ..|..|.++..+........+..+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCceeEEEEE
Confidence 445788876666654 689999999986434789988853 238888877776520000112256677
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcc-cchHHHHHHHHHcCCCcEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D-~ly~dEL~~~~~~g~~~~l 629 (714)
+|.|.|..+.....++||||+||||||++++++++...........++.|+|++|+.+ | ..|.+||.+..+-....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 7788876444456789999999999999999999887542111236899999999997 6 5899999751111111023
Q ss_pred EEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 630 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.+.+++ +|+||| .+|+++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333332 999999 8999999887765
No 92
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.68 E-value=5.7e-17 Score=167.34 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=108.6
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEE
Q 005109 490 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 490 ~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImI 569 (714)
..|+|||+|.+. ..++++|+|+.+ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ..++++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 469999999875 357888887642 11389999999887776 577888899998865 35789999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+||||||+++++++.... .++++|||+|+.+ |.++.+++. .++++.+.++++. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999976431 4799999999985 654433321 2355555443332 1111100000
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.......+..+|+||| ++|++.+++.|.+
T Consensus 191 ----~~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ----ALAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ----cccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0111134579999999 8999999988764
No 93
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.66 E-value=5.8e-16 Score=187.36 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=125.9
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
..+|||+.+..+ ....|+|||+|.|. ..+.++|+|+.+ |..|.+|.++.+|+ .+ .|.+|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~-~~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd------~l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDA-EKGTIDLVVQGM-----------GTSSLEINRMAIGD------AFSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCC-CCCEEEEEEEee-----------ccHHHHHhcCCCcC------EEeeeecCC
Confidence 457999865432 22359999999875 347899888643 88899999888876 45 377888
Q ss_pred CCcc-CCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHH---HHHHHcCC-Cc
Q 005109 554 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-LS 627 (714)
Q Consensus 554 ~~F~-lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL---~~~~~~g~-~~ 627 (714)
|+|. ++. ...++++|||+|+||||+++++++....+ .+++||||+|+++ |++|.+++ ++|++... .+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 8764 443 23468999999999999999999876543 5799999999986 88887664 55655433 33
Q ss_pred EEEEEEecCCC--CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~--~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++ +.++. .+++|++.+.+........- .+...||+||| ++|++.|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44443 44432 46788776543211100000 01357999999 99999999988654
No 94
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.62 E-value=1.5e-15 Score=140.10 Aligned_cols=92 Identities=23% Similarity=0.366 Sum_probs=72.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~ 188 (714)
|+|+|+|||||+|++++. ..+..+.+++.+. ..+ +++.+++ ++|||+|+.|+.+.+|++.+.
T Consensus 1 IvY~S~TGNte~fv~~lg---------~~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~- 62 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLG---------FQHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKH- 62 (125)
T ss_pred CEEEcccccHHHHHHHcC---------CCcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhh-
Confidence 689999999999955442 1223345544332 224 5666655 999999999999999999985
Q ss_pred ccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHH
Q 005109 189 KEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 226 (714)
Q Consensus 189 ~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 226 (714)
. +.+||||.||++| ++||.+++++.+++..
T Consensus 63 ---n-----~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 63 ---N-----LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ---h-----cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 2 8899999999999 9999999999999865
No 95
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.59 E-value=3.3e-15 Score=182.28 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=122.1
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhh-cccCCCCCCCCCcee-eEEEe
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWA-PIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L-~~~~~g~~~~~~~~v-~i~v~ 552 (714)
.-+|||+.+.++ ...+|+|||++.+. ..+.|+|.++.+ |..|.|| .++.+|+ .+ .+.+|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd------~l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQAL-----------GKTTREMMTKFKAGD------TFEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEec-----------CcHHHHHHhcCCCCC------EEeeeecC
Confidence 357999865433 23469999999775 346788777542 8899998 5777766 34 56777
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|..... .+++||||+|+||||+++++++....+ .+++++||+|+.+ +++|.+||+++.. +++++
T Consensus 90 lG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~ 156 (1006)
T PRK12775 90 LGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC 156 (1006)
T ss_pred CCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE
Confidence 776654322 468999999999999999999876543 4689999999997 9999999987753 22332
Q ss_pred EecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+.+++ .+++|++.+.+.. .. .....||+||| ++|++.|.+.+.+
T Consensus 157 -tddgs~G~~G~vt~~l~~~l----~~-~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVC----EK-DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHh----cc-CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33432 4678877665421 10 12347999999 9999999998764
No 96
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.58 E-value=7.9e-15 Score=162.74 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++|+|+|+|+|||||++|+.|++.+.+......++++++.+.+.++ +..++.+++.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 3568899999999999999999999999732122568889998876543 345567899999999999888885 5999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~ 257 (714)
|++++. ...++++++++|| +|.|+|.+.+.+.++|+++|++.+.|.....-.. ...+.+.+|.++|..
T Consensus 322 ~l~~l~----~~~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~ 391 (394)
T PRK11921 322 ILEEIK----GLGFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAE 391 (394)
T ss_pred HHHHhh----ccCcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999987 4568999999999 5999999999999999999999987654433322 223445677766643
No 97
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.57 E-value=1.2e-14 Score=138.61 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=92.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCC-CCCCCCchHHH-
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAAR- 181 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy-G~G~~pdna~~- 181 (714)
|+++.|+|.|+||||++|+++|...+.+......+..+++.++..++. +.+.....+|+++||| |.|.+|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 467999999999999999999987765421012233466655543211 1245667899999999 88877765543
Q ss_pred -----HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 182 -----FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 182 -----F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
..++|. .....++.+||||+||++| +.||.+|+++++.+ +...++.. +-.++.+|++.-++.|
T Consensus 78 ~vp~~v~dFL~----~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~f----El~GT~~Dv~~v~~~~ 146 (154)
T PRK02551 78 ILTTPLGDFIA----YHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADF----ELRGTPSDIERIAAII 146 (154)
T ss_pred cchHHHHHHHc----chhhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEe----eccCCHHHHHHHHHHH
Confidence 222332 1223678999999999999 89999999999875 55544432 2335666665554443
No 98
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.56 E-value=2.2e-14 Score=162.28 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=114.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|+|+|||||++|+.|++.+++.+....++++++++.+.++ +..++.+++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 467899999999999999999999999877534567889998877643 334556789999999999877777 79999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
++.+. ...++++++++|| +|.|+|.+++.+.++|+++|++.+ +........ ...+...++-+.|...+.
T Consensus 327 l~~l~----~~~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 327 LEEIT----GLRFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred HHHhh----ccCcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 99986 4568999999999 789999999999999999999975 323322222 233445666667665554
No 99
>PRK05569 flavodoxin; Provisional
Probab=99.53 E-value=1e-13 Score=131.56 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F 182 (714)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.++|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4578888887764 3578999999999999888764 799999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHH-HHHHHHHHHHHHHcCCccccc
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~~~~ 234 (714)
++.|. ...++++++++||. |.|. +.+.+.+.+.|.+.|++.+.+
T Consensus 73 ~~~l~----~~~~~~K~v~~f~t----~g~~~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFK----LTPNENKKCILFGS----YGWDNGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhh----ccCcCCCEEEEEeC----CCCCCCcHHHHHHHHHHHCCCeEeee
Confidence 99986 33478999999995 4443 567788899999999987654
No 100
>PRK05568 flavodoxin; Provisional
Probab=99.51 E-value=1.4e-13 Score=130.84 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=94.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F 182 (714)
|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 468999999999999999999999998765 5678888887764 3578899999999999888864 789999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHH-HHHHHHHHHHHHHcCCccccc
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~~~~ 234 (714)
++.+. ..++++++++||. |.|- ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~-----~~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESIS-----SLVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhh-----hhhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 99885 2368999999996 3332 346788899999999987765
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.48 E-value=2.7e-13 Score=127.16 Aligned_cols=121 Identities=22% Similarity=0.366 Sum_probs=87.6
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCC----CCCCchHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAAR 181 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~----G~~pdna~~ 181 (714)
.+.|+|.|.||||+.||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 578999999999999998885431 234554321 24456789999999999 699999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCc---hhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI---EDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~---e~~f~~W~~~l~~ 257 (714)
|++... .....++|||.||++| ++||.+++.+.+.+. +|+..-=+..+. .+.+..|.+++|.
T Consensus 65 Fl~~~~-------n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 65 FLNDEH-------NRKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred HHhccc-------cCCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 987753 1246899999999999 899999999999874 232221122232 3445777777764
No 102
>PLN02292 ferric-chelate reductase
Probab=99.41 E-value=1.2e-12 Score=152.45 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=115.1
Q ss_pred ChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 477 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 477 p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
.+||++-..+|. .+.|+|||+|+|..++++++++|+. .|..|++|.+....++....-.+.+.+|.
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPY 421 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPY 421 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCc
Confidence 356655433454 4689999999986456788887753 37788888876433321111245567778
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHH-------HHHcCC
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGA 625 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-------~~~~g~ 625 (714)
|.+..+.....+++|||||+||||+++++++..+..... ....++.|+|++|+.+ |.++.+++.. +++. .
T Consensus 422 G~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~-~ 499 (702)
T PLN02292 422 GPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF-I 499 (702)
T ss_pred cCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc-C
Confidence 877644334578999999999999999999987653211 1225899999999997 9988776543 2233 3
Q ss_pred CcEEEEEEecCCCCc-ccccchhhhchHHHHhcc-----cCCcEEEEecCc
Q 005109 626 LSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 670 (714)
Q Consensus 626 ~~~l~~a~Sr~~~~k-~yVq~~l~e~~~~l~~~i-----~~~~~iyvCGpa 670 (714)
..++.+.++|+.+.+ .|-++ +.+.+.+.+ .+...+.+|||.
T Consensus 500 ~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 500 DIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred CceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 447778888876432 22222 222222221 256789999993
No 103
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.40 E-value=1.1e-12 Score=153.16 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=118.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC----CC-CCCCCce
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSW 546 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~----g~-~~~~~~~ 546 (714)
+..+|||+..-+|. .+.|+|||+|+|..+++.++++|+.. |-.|+.|.+... .+ ....+..
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 44568887654454 36799999998865567788877532 444555544321 11 1111125
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHH-----H
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-----F 620 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-----~ 620 (714)
+.|.+|.|.|..+....++++|||+|||||||++++++........ ....++.|+|++|+.+ |..|.+|+.. +
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 6667788888665444578999999999999999999998643211 1225799999999998 9999999863 2
Q ss_pred HHcCCCcEEEEEEecCCCCcccccchhhhc--hHHHHhcccCCcEEEEecCc
Q 005109 621 VQSGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDA 670 (714)
Q Consensus 621 ~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~--~~~l~~~i~~~~~iyvCGpa 670 (714)
.+. ...++++..+|+......+++.+... ...++ +-.+...+.+||+.
T Consensus 486 ~~~-~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~ 535 (722)
T PLN02844 486 SNQ-LNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLE 535 (722)
T ss_pred HHh-cCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCC
Confidence 222 24477888899865544555544331 11222 22455789999994
No 104
>PLN02631 ferric-chelate reductase
Probab=99.37 E-value=1.2e-12 Score=152.03 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC-CCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~-g~~~~~~~~v~i~ 550 (714)
+.-+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+... +++ ...+.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEEE
Confidence 44567876554554 4679999999986556788888752 4888999977442 221 1245566
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHH------HHc
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQS 623 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~------~~~ 623 (714)
+|.|.|..+.....++||||||+||||++|++++...+...+ .+.+++.|+||+|+.+ |.+|.|||..+ .+
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~- 477 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS- 477 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-
Confidence 778877665445578999999999999999999998654221 1235899999999997 99999999863 22
Q ss_pred CCCcEEEEEEecCCC
Q 005109 624 GALSQLIVAFSREGP 638 (714)
Q Consensus 624 g~~~~l~~a~Sr~~~ 638 (714)
....++...+||++.
T Consensus 478 ~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 RLNLRIEAYITREDK 492 (699)
T ss_pred cCceEEEEEEcCCCC
Confidence 235578888999754
No 105
>PRK06242 flavodoxin; Provisional
Probab=99.27 E-value=2.5e-11 Score=116.38 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=86.1
Q ss_pred ceEEEEEeCC-CchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++|+|.|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5689999999 7999999999999883 35666665442 3477899999999999 788999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
+.+. .++++++++||.+...... ..+.+.+.|..+|++.+..
T Consensus 67 ~~~~------~~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 67 EKLP------PVSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred Hhhh------hhcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEE
Confidence 8874 2578999999976554432 2789999999999997755
No 106
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.12 E-value=6.3e-10 Score=112.17 Aligned_cols=126 Identities=18% Similarity=0.119 Sum_probs=93.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchH--------------HHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDE--------------YEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~--------------~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+|++|||+++|+.+++.+.+ .+ ..++++++.+..+++.. -.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 55 56788888543221110 0467888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
|| .|.+|..++.|++++........+.++.+++|+.+.....---...+.+...|..+|+..+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 9999999999999986211123588999999996544332233344556666678888754
No 107
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.11 E-value=7.7e-10 Score=111.21 Aligned_cols=124 Identities=19% Similarity=0.104 Sum_probs=93.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhh-cCCCeeEEecCccccccchH------------H--HHhhcCCCeEEEEEeCC
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATY 170 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~vif~~sTy 170 (714)
+|+|+|+|+||+|+++|+.+++.+++. + ..++++++.+...++.. + ..++.+++.+||++|||
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g--~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDG--AEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCC--CEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 699999999999999999999999765 4 56788887654321100 0 14577899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.|.++..++.|++++........+.++..++|+.+.....-...+...+...|..+|+..+
T Consensus 80 -~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred -ccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 8999999999999986211123588999999996654444455555667777788888754
No 108
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.07 E-value=3.8e-10 Score=111.45 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++.+++.+||++||| .|.+++.+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 478999999999999999999999976 5 4577888877553 2477899999999999 9999999999987
Q ss_pred HHHhccCCCccCCceEEEEecc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLG 206 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlG 206 (714)
... ..|+++++++|++|
T Consensus 71 ~~~-----~~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHA-----TQLNQMPSAFFSVN 87 (177)
T ss_pred HHH-----HHhCCCeEEEEEec
Confidence 753 35899999999988
No 109
>PRK07116 flavodoxin; Provisional
Probab=99.06 E-value=1.1e-09 Score=106.50 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc--------------------h---HHHHhhcCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (714)
|++++|+|.|.||||+.+|+.|++.+.... +.+.+...|...+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 678999999999999999999999985421 2333333222100 0 012356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
+.++|++|+| .|.+|..+..|++.+ .++++++++|+. |.+.+ +.+...+.+.+. ...+.+.-..+
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~---~~~~~~~~~~~ 143 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGI---GNAEKELKKSYP---DANWKEGRLLN 143 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCC---cCccccCeeec
Confidence 9999999999 688898888887654 377899999997 65554 444555555542 22222211111
Q ss_pred CCCCchhhHHHHHHHH
Q 005109 240 DDQCIEDDFSAWRELV 255 (714)
Q Consensus 240 ~~~~~e~~f~~W~~~l 255 (714)
....++++++|.+++
T Consensus 144 -~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 144 -GGASKEEIKEWINKL 158 (160)
T ss_pred -CCCcHHHHHHHHHHc
Confidence 112366799998764
No 110
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.02 E-value=1.3e-09 Score=117.72 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=102.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++|.|+|.|++|+|+.+|++|++.+.+.| +.|.++++.+-+. .++.+.+.+.+.+++++||+ ++++++.+..++.
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~ 321 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALG 321 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHH
Confidence 38999999999999999999999999987 5678888877654 55778889999999999999 6666668999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.+. ....+++..+||| +|.|-..+.+.+.+.|+++|-+...+
T Consensus 322 ~v~----~~~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 322 YVL----ALAPKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHH----hccCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 887 4557788899999 89999999999999999999987665
No 111
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.96 E-value=1.2e-09 Score=100.24 Aligned_cols=115 Identities=26% Similarity=0.388 Sum_probs=70.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCC----CCchHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~----~pdna~~F~~ 184 (714)
|+|.|.||||++|+++|...+... . +.+.+.+ +.+.-...+|+++||||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~-------~~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREIS-------PDLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTT-------STS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-ccccccc-------ccccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999999887644321 1 1222111 12334566899999999999 9999999888
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 251 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W 251 (714)
+-. -...-.+|+|.||++| +.||.+|+++.+.+ +...++.. +-.+.++|.+.-
T Consensus 67 ~~~-------N~~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPD-------NRKLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHH-------HGGGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHH-------HHhhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 543 2345678999999999 89999999999876 44444322 233556666543
No 112
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.89 E-value=6.4e-10 Score=112.16 Aligned_cols=180 Identities=18% Similarity=0.320 Sum_probs=104.7
Q ss_pred CCChHHHHHHh--cCCCc---ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005109 475 KPPLGVFFAAI--VPRLQ---PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 549 (714)
Q Consensus 475 ~~p~~~~l~~i--~p~l~---pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i 549 (714)
...+|||+... .|++. -|-||.|+......+.+.|.|+. ...|+.|+|++.-...|+ .+.+
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KVGD-----~v~~ 245 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKVGD-----IVGV 245 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccccc-----eeec
Confidence 34578887532 13321 35566665554456778877764 355999999987555544 4667
Q ss_pred EEecCCccCCC---CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 550 FVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 550 ~v~~~~F~lp~---~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
..|.|+|.... +..+|+++.++|+||+|+++++++.+.-..+ +|+. --...- |.-|++-++
T Consensus 246 S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~----RP~~---~~~~~~-~~K~k~~~K-------- 309 (385)
T KOG3378|consen 246 SPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSS----RPFK---QWLEQL-KLKYKENLK-------- 309 (385)
T ss_pred cCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCCC----CcHH---HHHHHH-HHHHHHHHH--------
Confidence 77889997753 4579999999999999999999987641100 1110 000000 111111111
Q ss_pred cEEEEEEecCCC--Ccccccchhhh--chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHH
Q 005109 627 SQLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 687 (714)
Q Consensus 627 ~~l~~a~Sr~~~--~k~yVq~~l~e--~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~ 687 (714)
+.--||.+.+ .+.-|...+.. +.+.+-++-...++||.||| ..+|+.|..-|.++..+
T Consensus 310 --~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 310 --LKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred --HHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 0001122211 12222222211 22333333345789999999 89999999999887544
No 113
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.79 E-value=1.9e-08 Score=95.86 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=69.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
+|+|.|.||||+++|+.|++.|.+.+ ..+|+.+...+ ..++.+++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998653 45566554211 24678999999999999 7999999999999874
Q ss_pred hccCCCccCCceEEEEeccCC
Q 005109 188 EKEGGEWLQKLKYGVFGLGNR 208 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds 208 (714)
..|+++++++|..|-.
T Consensus 71 -----~~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 -----DNLKNKKVALFSVGGS 86 (143)
T ss_pred -----HHHcCCcEEEEEEeCC
Confidence 3578899999987644
No 114
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.7e-08 Score=90.41 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=85.3
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCC----CCCchHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAAR 181 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G----~~pdna~~ 181 (714)
.+.|+|-|.||||..|+++|. +. ...+.+...++ .+.-...+|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 467999999999999999887 11 11222221111 133345689999999999 89988777
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhh---HHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD---FSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~---f~~W~~~l~~ 257 (714)
|+..= .-..+.-+|.|.||++| ..||.+|+.+.+.+ |..-++.. +-.++++| +.+|..++|+
T Consensus 66 FLn~~-------~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F----EL~GT~~Dv~~v~~~v~~~~~ 131 (141)
T COG1780 66 FLNNE-------HNRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF----ELLGTAEDVAAVRKGVTEFWK 131 (141)
T ss_pred Hhccc-------cchhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE----eccCCHHHHHHHHHHHHHHHH
Confidence 75432 23467789999999999 89999999998775 54444332 22244444 6678777776
Q ss_pred HH
Q 005109 258 EL 259 (714)
Q Consensus 258 ~L 259 (714)
..
T Consensus 132 ~~ 133 (141)
T COG1780 132 RA 133 (141)
T ss_pred hC
Confidence 43
No 115
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.72 E-value=3.1e-08 Score=95.29 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.4
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC--CCcEEEEEEecCC
Q 005109 565 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREG 637 (714)
Q Consensus 565 piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g--~~~~l~~a~Sr~~ 637 (714)
.++|||||+||+|+.++++++..... ......++.|+|.+|+.+.=..|.++|+++.... ...++.+.++++.
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRES 78 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT--
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCc
Confidence 38999999999999999999987664 2234578999999999983347886666554321 2456777776653
No 116
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.62 E-value=2.8e-07 Score=88.42 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=96.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccc---------------ccchHHHHhhcCCCeEEEEE
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~vif~~ 167 (714)
|||+|++||.. |+|+.+|+.+++.+.+.+ ..++++|+.++. .+-.++.+++.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 678899998861 11223456788999999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999952 11346899999999888665433 33567788888888987553
No 117
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.54 E-value=3.1e-07 Score=89.05 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=73.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
+|+|.|.||||+++|+.|++.|.. ..++++++... .+.++++++++..+| -|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25666766542 267899999999999 799999999987775
Q ss_pred hccCCCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHH
Q 005109 188 EKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILAN 226 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~ 226 (714)
+++++++||.--.. =+|+..+.+++.+.+.+
T Consensus 66 --------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 --------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred --------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 46889999753111 14667777666666644
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.40 E-value=4.4e-07 Score=85.49 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|++|+|.++|+.|+..|++.| ..|++.|+..... .++.+++.+|+++|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 57999999999999999999999999887 5577777765431 3678999999999999 9999999888888
Q ss_pred HHHhccCCCccCCceEEEEecc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLG 206 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlG 206 (714)
.-. ..|++++.|+|.++
T Consensus 72 k~~-----e~L~~kP~A~f~vn 88 (175)
T COG4635 72 KHA-----EALSTKPSAFFSVN 88 (175)
T ss_pred HHH-----HHHhcCCceEEEee
Confidence 764 45888999999875
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.35 E-value=1.7e-06 Score=83.65 Aligned_cols=132 Identities=17% Similarity=0.337 Sum_probs=75.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc---c------c-----------hHH---HHhhcCCCe
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------E-----------DEY---EEKLKKENI 162 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~------~-----------~~~---~~~l~~~~~ 162 (714)
|++|+|-|+||||+.+|+.|++.+..- -+++...+.|.. + . .++ ..++.+|+.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876432 134444444433 0 0 000 125688999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccccccccCC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 241 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~ 241 (714)
++++.|+| -|.+|..+..|++.. .++|++++.|-. |.+. +..+.+.+.+.+. +|+..-.+.. ..+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~i~~g~~~-~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GATILEGLAI-NRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE---EE----S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCEeecCeEE-eCC
Confidence 99999999 999999988887643 488999999953 3322 3344455554432 3443222222 111
Q ss_pred CCchhhHHHHHHHH
Q 005109 242 QCIEDDFSAWRELV 255 (714)
Q Consensus 242 ~~~e~~f~~W~~~l 255 (714)
.-.++++.+|.++|
T Consensus 143 ~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SVSEEEIKEWLKKI 156 (156)
T ss_dssp ---HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHhC
Confidence 11578999998764
No 120
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=3.6e-06 Score=98.90 Aligned_cols=131 Identities=16% Similarity=0.275 Sum_probs=83.7
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCC--CC--CC---CCce
Q 005109 477 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK--SN---DCSW 546 (714)
Q Consensus 477 p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g--~~--~~---~~~~ 546 (714)
-+||++-+-+| .++-+||||+|+| +++.+.+.|+.+ |..|+-|.+.... .+ .. ...+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence 46777644345 4578999999999 468899888754 6666666544321 00 00 0124
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC------------CCCcEEEEEeeecCCccc-ch
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IY 613 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~------------~~~~~~Lf~G~R~~~~D~-ly 613 (714)
+.|.+|.|.=.-+-..-.-++|||+|.|++||.|++++.......+. ..+++..+|-||... ++ .+
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf 528 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWF 528 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHH
Confidence 55666654321111122347999999999999999999987654332 346778888898887 55 45
Q ss_pred HHHHHHHH
Q 005109 614 EDELNNFV 621 (714)
Q Consensus 614 ~dEL~~~~ 621 (714)
.+.+.+..
T Consensus 529 ~~~l~~v~ 536 (646)
T KOG0039|consen 529 KGLLTEVE 536 (646)
T ss_pred HHHHHHHH
Confidence 55555544
No 121
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.15 E-value=6.3e-05 Score=75.28 Aligned_cols=120 Identities=10% Similarity=0.149 Sum_probs=94.5
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccccc-----------hHHHHhhcCCCeEEEEEeCCC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vif~~sTyG 171 (714)
++|+++.||-. ++|..+++.+.+.+.+.+ ..++++|+.++..++ ..+.+++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 47999999984 889999999999998765 567778877654422 12345678889999999999
Q ss_pred CCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 172 DGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.|..|.-.+.|++|+. ...+.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~----~~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLP----ERALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCC----hhhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 9999999999999995 346899999999998 4455555554567778888999854
No 122
>PRK06934 flavodoxin; Provisional
Probab=98.07 E-value=5.7e-05 Score=76.86 Aligned_cols=135 Identities=12% Similarity=0.159 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------------chH---HHHhhcCCCeEE
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDE---YEEKLKKENIVF 164 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~~~---~~~~l~~~~~vi 164 (714)
...++|.=|+.||||+.+|+.|++.+..-- .++...+.|..+ .++ ...++.+++.++
T Consensus 59 ~~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl----~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~ 134 (221)
T PRK06934 59 GASILQKNGEVLGSTQYVAQIIQEETGGDL----FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIF 134 (221)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHCCCE----EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEE
Confidence 344566666677999999999999875421 233333333211 111 135678999999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccc--ccCC
Q 005109 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGL--GDDD 241 (714)
Q Consensus 165 f~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~--gD~~ 241 (714)
++.|.| -|.+|.-+..|++.. .++|++++.|-. |-+. +....+.+.+.+ -+|+.+.+--. +++-
T Consensus 135 IG~PIW-wg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg---~g~s~~~i~~l~--~~a~~v~~Gl~i~~~~~ 201 (221)
T PRK06934 135 IGYPIW-WYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSR---FSDSLREIKRLQ--PNAQLVTQGLAISRNDV 201 (221)
T ss_pred EEcchh-hccccHHHHHHHHhc-------CCCCCEEEEEEecCCCC---ccchHHHHHHHc--CCcceeccceeeecCcc
Confidence 999999 899999988887654 478999999963 2222 233334444332 14422322111 2221
Q ss_pred --CCchhhHHHHHHHH
Q 005109 242 --QCIEDDFSAWRELV 255 (714)
Q Consensus 242 --~~~e~~f~~W~~~l 255 (714)
...++++..|.+++
T Consensus 202 ~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 202 TDDDTPKEIINWLNTL 217 (221)
T ss_pred cccchHHHHHHHHHHc
Confidence 12478899998764
No 123
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.00 E-value=1.4e-05 Score=96.05 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=63.5
Q ss_pred CChHHHHHHhcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p-----~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i 549 (714)
.-+|||+.+-.+ .+ .||++||++... ..+.|++++++| |..|.+|+++.+|+ .+.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd------~v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEV-----------GKSTSLCKTLSENE------KVVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEE-----------ChHHHHHhcCCCCC------EEEE
Confidence 447999865432 22 578999999765 357899998876 99999999998876 4667
Q ss_pred EEecC-CccCCCCCCCCeEEEecCCcchhH
Q 005109 550 FVRQS-NFKLPADAKVPIIMIGPGTGLAPF 578 (714)
Q Consensus 550 ~v~~~-~F~lp~~~~~piImIa~GTGIAPf 578 (714)
.+|.| .|.++. ...+++||||+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 77854 588764 3569999999999983
No 124
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=97.94 E-value=0.00019 Score=70.47 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=91.2
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHHHHhhcCCCeEEEEEeCCCC
Q 005109 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATYGD 172 (714)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vif~~sTyG~ 172 (714)
+|+++.||- .|++.++++.+.+.+...+ ..++++|+.++... -..+.+++...+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 588999995 6889999999999998765 34667777554321 112345677889999999999 9
Q ss_pred CCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 173 GEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
|.+|...+.|++|+. ...+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~----~~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLP----QRALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCC----hhhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999984 235889999988887 455665544346788888999965433
No 125
>PRK00170 azoreductase; Reviewed
Probab=97.90 E-value=0.00031 Score=70.56 Aligned_cols=155 Identities=9% Similarity=-0.014 Sum_probs=101.4
Q ss_pred CceEEEEEeCC--C-chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------------------------chHH
Q 005109 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (714)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (714)
|++|+|++||- . |+|..+|+.+.+.+++.++...++++||.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988744466788888654321 1112
Q ss_pred HHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc---------cCCCccCCceEEEEeccCCch--hHHHHHHHHHHH
Q 005109 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK---------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 222 (714)
Q Consensus 154 ~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~---------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 222 (714)
.+++...+.+||++|.| .+..|.-.+.|++++... .....++++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 35678889999999999 999999999999998510 011247889998887532222 112344556667
Q ss_pred HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 223 ~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
.|.-+|.+.+-.+.....+. ..+.-++|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHH
Confidence 77778988544333222221 22334555555444443
No 126
>PRK09739 hypothetical protein; Provisional
Probab=97.90 E-value=0.00029 Score=70.93 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=102.6
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------------cchHHHHhhcCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (714)
|++|+|++||- .|++..+++.+.+++++.+ ..++++||.+... +-.++.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999997 5778999999999998875 4577777754321 112345678889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhc----cCCCccCCceEEEEeccCCchhHHHH------HHHHHH-HHHHHcCC
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEK----EGGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 229 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~----~~~~~l~~~~~aVFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 229 (714)
+.+||++|.| .+.+|.-.+.|++++... .....|.+++..++......|++|.. +..-+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 999999999999987510 11234778888877653334444322 222333 33344576
Q ss_pred ccccccccccCC-----CCchhhHHHHHHHHHHHHHhh
Q 005109 230 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 230 ~~~~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 262 (714)
+.+-....+... ...++.++.|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654222222221 335667889988876665543
No 127
>PRK01355 azoreductase; Reviewed
Probab=97.88 E-value=0.00036 Score=70.35 Aligned_cols=158 Identities=12% Similarity=0.105 Sum_probs=106.6
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------------c-hHHHHhhcCCCe
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------E-DEYEEKLKKENI 162 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~-~~~~~~l~~~~~ 162 (714)
|++|+|+.||-. |++..+|+.+.+++++.+....++++||.+.... + ..+.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987654566788888654431 1 223466788899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhc---------cC---CCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHHcC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEK---------EG---GEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQG 228 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~---------~~---~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lG 228 (714)
+||++|.| .+.+|.-.+.|++++... .. ...+.+++..|+-..... +..+.....-+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 999999999999998511 00 123678887776433321 1123455566777888889
Q ss_pred CccccccccccCCC-Cch-hhHHHHHHHHHHHHHhh
Q 005109 229 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 262 (714)
Q Consensus 229 a~~~~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 262 (714)
.+.+.....+..+. ..+ +....|.+.-.+++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665544433222 111 22777777666655543
No 128
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=97.82 E-value=0.00039 Score=68.45 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=88.6
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccc------------c-cchHHHHhhcCCCeEEEEEeCC
Q 005109 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA------------D-EEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~------------~-~~~~~~~~l~~~~~vif~~sTy 170 (714)
||+++.||. .|++..+++.+.+.+.+..+ ..++++|+.+++ . +-.++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 58999999999988765422 456777776542 1 1123456788899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|.+|.-.+.|++|+. ...+.+++.++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~----~~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVD----PNALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcC----HhHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 9999999999999985 3458899999998875432 222233446667777888754
No 129
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.66 E-value=0.0012 Score=66.38 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCccc--------------cc-----cchH-H-HHhhcCC
Q 005109 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDE-Y-EEKLKKE 160 (714)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~-~-~~~l~~~ 160 (714)
|+|+|++||-.+ ++..+++.+.+.+++.++ ..++++||.+. .. .|.. - .+.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56889999773 00 1111 1 2667889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHH--hc-c---C-----CCccCCceEEEEe-ccCCch--h-------HHHHHHHH
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFT--EK-E---G-----GEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 219 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~--~~-~---~-----~~~l~~~~~aVFG-lGds~Y--~-------~f~~~~k~ 219 (714)
+.+||+.|.| .+.+|.-.+.|++.+. .. - . ...|+++++.++- .|...+ . .+.....-
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 9999999999999874 11 0 1 2457888877764 554432 2 34555566
Q ss_pred HHHHHHHcCCccccccccccCC-CCchhhHHHHHHHHHHHH
Q 005109 220 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 220 ld~~L~~lGa~~~~~~g~gD~~-~~~e~~f~~W~~~l~~~L 259 (714)
+...+.-+|.+.+-....++.+ ...++..++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888888899988766655543 223778889988875543
No 130
>PRK13556 azoreductase; Provisional
Probab=97.53 E-value=0.003 Score=64.08 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=102.3
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-----------------------------cc
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------------------------EE 150 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------------------------~~ 150 (714)
|++|+|+.||-. +++..+++.+.+.+++.++...|+++||.+.+. +-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765456678888753211 00
Q ss_pred hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------cC--CCccCCceEEEEeccCCch-----hHHHHH
Q 005109 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------EG--GEWLQKLKYGVFGLGNRQY-----EHFNKI 216 (714)
Q Consensus 151 ~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~~--~~~l~~~~~aVFGlGds~Y-----~~f~~~ 216 (714)
.++...+...+.+||++|-| ++.+|.-.+.+++|+... .. ...+.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12335677889999999999 999999999999999721 01 1247899999986533335 334444
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
..-+...|.-+|++.+- ....+-.....+..+++.++....+.
T Consensus 160 ~~~l~~il~~~G~~~~~-~v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNME-TVVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCcee-EEEEehhhcChhHHHHHHHHHHHHHH
Confidence 56677788888987543 22222111233445555554444443
No 131
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.41 E-value=5.4e-05 Score=67.08 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.++. ...|+|||+|.|. .++.++|+|+.. ..|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45679998766561 2469999999996 457899988743 5699999999988776 578888
Q ss_pred ecCCcc
Q 005109 552 RQSNFK 557 (714)
Q Consensus 552 ~~~~F~ 557 (714)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 999885
No 132
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.22 E-value=0.0029 Score=64.13 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=84.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccc-----------c--------c-chHHHHhhcCCCeEEE
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA-----------D--------E-EDEYEEKLKKENIVFF 165 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~-----------~--------~-~~~~~~~l~~~~~vif 165 (714)
.|.+.|-| +|||+.+++.+++.+++.| +.++++.+.+++ . | .+++.+.+.+.+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45556666 7999999999999999886 556676666541 0 1 1344566888999999
Q ss_pred EEeCCCCCCCCchHHHHHHH-HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcc
Q 005109 166 FLATYGDGEPTDNAARFYKW-FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 231 (714)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~-L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 231 (714)
++||| .|..+..++.|++. +...-....|.++..++|..+.+.-.........+...+...|...
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~ 147 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIV 147 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeE
Confidence 99999 99999999999999 4311112457888888887665443322234455555665556553
No 133
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.75 E-value=0.075 Score=52.85 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=97.8
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc----cchHHHHhhcCCCeEEEEEeCCCCCCCCc
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~pd 177 (714)
..+++++|++++..+..-..-+.+.+.+++ . ..+.+.||.+.-+ |-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~~-~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQQ-L--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHHc-C--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 356899999999986532222333333332 2 3477888764322 2222234678899999999999 888888
Q ss_pred hHHHHHHHHHh-----ccCCCccCCceEEEEe-ccCCc--hh--HHHH-----HHHHHHHHHHHcCCccccccccccCCC
Q 005109 178 NAARFYKWFTE-----KEGGEWLQKLKYGVFG-LGNRQ--YE--HFNK-----IAKVVDEILANQGAKRLVPVGLGDDDQ 242 (714)
Q Consensus 178 na~~F~~~L~~-----~~~~~~l~~~~~aVFG-lGds~--Y~--~f~~-----~~k~ld~~L~~lGa~~~~~~g~gD~~~ 242 (714)
-.+.+++..-. ...+..|+|+++.+.- .|... |. .+++ .-.-++..+.-+|.+-+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 99998887651 1112358899888763 44433 42 1221 112223333456888777776666655
Q ss_pred CchhhHHHHHHHHHHHHHhhh
Q 005109 243 CIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 243 ~~e~~f~~W~~~l~~~L~~~~ 263 (714)
..+++.++|.++....|...+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 159 QSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhhh
Confidence 667888888888777666543
No 134
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=96.54 E-value=0.049 Score=55.65 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=88.0
Q ss_pred ccCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccc---ccc------hHHHHhhcCCCeEEEEEeC
Q 005109 101 DDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---DEE------DEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 101 ~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---~~~------~~~~~~l~~~~~vif~~sT 169 (714)
...+.+|+++.||.. -++..+|+.+.+.+...+ ..++++|+.+++ .+. ..+...+...+.+||++|-
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE 100 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE 100 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc
Confidence 345679999999874 345778888888887554 567777775433 211 1123456678999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccC-CCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEG-GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~-~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
| +|..|.-.+.+++|+....+ ...+.++.++|+|.+-... --.+...+...|..+|+..+
T Consensus 101 Y-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 101 R-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred c-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccc
Confidence 9 99999999999999972111 1248899999998531111 12355677788888888744
No 135
>PRK13555 azoreductase; Provisional
Probab=96.33 E-value=0.18 Score=51.29 Aligned_cols=127 Identities=10% Similarity=0.144 Sum_probs=88.0
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc--------------------cch--------
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------~~~-------- 151 (714)
|++++++++|-. -.+..+|+.+.+++++.++...|.++||-+... .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 467888888888888877556677787754211 001
Q ss_pred -HHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchh-----HHHHH
Q 005109 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKI 216 (714)
Q Consensus 152 -~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~-----~f~~~ 216 (714)
.+.+.+...+.+||++|-| ++.+|.-.+.+++|+... . ....|++++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 2235577789999999999 999999999999998721 1 113488999999976333452 22223
Q ss_pred HHHHHHHHHHcCCcc
Q 005109 217 AKVVDEILANQGAKR 231 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~ 231 (714)
..-+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356666777778764
No 136
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=94.85 E-value=0.28 Score=48.74 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecC--cccc--------cc-chHHHHhhcCCCeEEEEEeCCC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDI--DDYA--------DE-EDEYEEKLKKENIVFFFLATYG 171 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl--~~~~--------~~-~~~~~~~l~~~~~vif~~sTyG 171 (714)
++|++++||.. -.+..+|+.+.+.+...+. ..+...|+ .-|+ ++ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999965 4567788888888876542 22222221 1111 11 111335677889999999999
Q ss_pred CCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 172 DGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+|..|.-.+..++||. ...+.++..++++.|.... +.-.+...+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~----~~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLS----REALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCC----HhHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 9999999999999996 3368899988888654443 2333556777777788887553
No 137
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.42 Score=49.99 Aligned_cols=173 Identities=20% Similarity=0.308 Sum_probs=101.9
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeE
Q 005109 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 567 (714)
Q Consensus 488 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piI 567 (714)
+..+|.|||.+-.. ..+++. |-+|.. ...|.+|.|-.+.++|+ .+.|.++.+.+..++. ..-++
T Consensus 84 r~~~R~YTiR~~d~-~~~e~~--vDfVlH------~~~gpas~WA~~a~~GD------~l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDA-AAGELD--VDFVLH------GEGGPASRWARTAQPGD------TLTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeecc-cccEEE--EEEEEc------CCCCcchhhHhhCCCCC------EEEEeCCCCCCCCCCC-cceEE
Confidence 44679999986532 234444 444421 25799999999999987 4677778888776544 45699
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchh
Q 005109 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 647 (714)
Q Consensus 568 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l 647 (714)
|||==|++--+.++|++.-.. .+...|.-.++.. |. .++. ....+ ++... .|++.. + ...+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl-~r~~~~--~-~~ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWL-ARDDAP--T-EQLL 208 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC---CCCce-eEEEe-cCCCcc--c-hHHH
Confidence 999999998888888876432 3446677777665 44 2221 11222 34433 343321 1 1122
Q ss_pred hhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHH--HHHHHH
Q 005109 648 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK--AESMVK 701 (714)
Q Consensus 648 ~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~--a~~~~~ 701 (714)
.+...+ ..+-..+.+++|.|- ..|++.+++.|. .+.|++... +..|++
T Consensus 209 ~~a~~~-~~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~i~a~gYW~ 258 (265)
T COG2375 209 AAALAQ-AALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSRVRAIGYWR 258 (265)
T ss_pred HHHHhc-ccCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHHhhhhhhhh
Confidence 221111 111123479999998 677777666655 455666553 333444
No 138
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=94.33 E-value=0.94 Score=44.76 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=93.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc----cchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
|+|++|........+-+.|.+.+... ..|++.||.+..+ |-......|...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998887666777787777643 3478888754322 1111235578899999999999 88888888888
Q ss_pred HHHHHh-----ccCCCccCCceE-EEEeccCCc--hh-----HHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHH
Q 005109 183 YKWFTE-----KEGGEWLQKLKY-GVFGLGNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 249 (714)
Q Consensus 183 ~~~L~~-----~~~~~~l~~~~~-aVFGlGds~--Y~-----~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~ 249 (714)
++..-. ...+..|+|+++ .++-.|... |. .+...-.-+...+.-+|.+-+-|..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 876541 112345888876 455556542 31 12222334445555678887666554433333455565
Q ss_pred HHHHHHHHHHHh
Q 005109 250 AWRELVWPELDN 261 (714)
Q Consensus 250 ~W~~~l~~~L~~ 261 (714)
+..++....|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 139
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=93.44 E-value=0.16 Score=48.74 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=81.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHH----HHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEY----EEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~----~~~l~~~~~vif~~s 168 (714)
+.+|.|+|-|.+|.-+.+|+...+.+.+.++. .++..+.+.-.+ +.+| .+.|.+++.++|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~ge--A~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGE--ATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCe--eEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35789999999999999999999988877643 233333221100 0001 245788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGL 237 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~ 237 (714)
|- .|.+|..++.||+.-...=....|.|+..++|=.+-++= .+=- .+..--..|.-.|. .++|+|.
T Consensus 79 TR-fG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~-talta~t~LvHHGm-ifVPlGY 145 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQET-TALTAITQLVHHGM-IFVPLGY 145 (203)
T ss_pred cc-ccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHh-HHHHHHHHHHhcce-EEEeccc
Confidence 99 999999999999963211113458899999996544332 1111 11121223333454 4668874
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=90.19 E-value=5.1 Score=40.09 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=94.4
Q ss_pred ceEEEEEeCCC-chHHHHHHHHHHHHHhhcCCCe-----eEEecC----cc--ccccchHHHHhhcCCCeEEEEEeCCCC
Q 005109 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVVDI----DD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (714)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~dl----~~--~~~~~~~~~~~l~~~~~vif~~sTyG~ 172 (714)
++|+|+||-.- ..+-..++...+.+.+.+.... ....|+ .| +..|-..-.+++...+.+||.-|-| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 57999999985 3333444444444444432110 111111 22 2322222246788899999999999 6
Q ss_pred CCCCchHHHHHHHHH--h--c-cCC----CccCCceEEEEeccCCchhHHHHHHHH---------HHHHHHHcCCccccc
Q 005109 173 GEPTDNAARFYKWFT--E--K-EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 234 (714)
Q Consensus 173 G~~pdna~~F~~~L~--~--~-~~~----~~l~~~~~aVFGlGds~Y~~f~~~~k~---------ld~~L~~lGa~~~~~ 234 (714)
+..|.-.+.+++..- . - ..+ ..|.|+++-++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 677778888888765 1 1 111 468999988887655543444333332 223444567766666
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 235 VGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 235 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
...+..+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 6666666677889999998887766654
No 141
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=87.87 E-value=0.61 Score=49.21 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.1
Q ss_pred EeeeecccCCCCCCceeEEEEEecC-CCCccCCCCeeEEeccC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 360 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~v~p~N 360 (714)
+++++.+++|+|.++++|++|++++ ..+.|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4568889999999999999999875 67899999999999764
No 142
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=85.52 E-value=1.4 Score=48.64 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCccCCCCccccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE
Q 005109 60 TSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK 139 (714)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~ 139 (714)
.+..+++-.++++.+++..+.+-.....+.+ ..+++....-.-++|.=+=++|-+..||+.|++.+.+.+..
T Consensus 317 d~pevil~gal~lhy~mikqmkgvpgvk~Er----~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflv---- 388 (601)
T KOG1160|consen 317 DAPEVILKGALYLHYNMIKQMKGVPGVKAER----FEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLV---- 388 (601)
T ss_pred CCchhhhHHHHHHHHHHHHHhhcCCCcCHHH----HHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhc----
Confidence 3456666667788777655322111111000 01122222334567788889999999999999988765421
Q ss_pred EecCccccccchHHHHhh-cCCCeEEEEEeCCCCCCCCchHHHHHHHHH---hc-cCCCccCCceEEEEeccCCch--hH
Q 005109 140 VVDIDDYADEEDEYEEKL-KKENIVFFFLATYGDGEPTDNAARFYKWFT---EK-EGGEWLQKLKYGVFGLGNRQY--EH 212 (714)
Q Consensus 140 v~dl~~~~~~~~~~~~~l-~~~~~vif~~sTyG~G~~pdna~~F~~~L~---~~-~~~~~l~~~~~aVFGlGds~Y--~~ 212 (714)
.++. + +++..-...+ .=+-.+++.+=|.--|.+.+--++||+||. .. ..+....-.|+++.|.||+.= ..
T Consensus 389 -tnaq-~-pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ay 465 (601)
T KOG1160|consen 389 -TNAQ-F-PEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAY 465 (601)
T ss_pred -cccc-C-hHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHH
Confidence 1111 1 1110000111 123345666667767889999999999997 11 122345557899999999884 78
Q ss_pred HHHHHHHHHHHHHHcCCccccc
Q 005109 213 FNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 213 f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
||.+++-+-.+++-+||+-..+
T Consensus 466 fnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 466 FNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred HHHHhccCCceEEEeceeEecc
Confidence 9999999999999889986644
No 143
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=85.15 E-value=0.37 Score=53.42 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.9
Q ss_pred EEeccCCch-h-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHhhh
Q 005109 202 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 202 VFGlGds~Y-~-----~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 263 (714)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|.. +.......|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 6999999999999999999999999999854 567788899999999987544
No 144
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=77.14 E-value=63 Score=30.50 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
++-.|+-++--|-.-.+...+...+-+ +| ++++++-..-+ .+++.+...+++.=+++.|.. .+..-..+..+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G----~eVi~LG~~vp-~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAG----FEVINLGVMTS-QEEFIDAAIETDADAILVSSL-YGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHH
Confidence 344577788888888887776666544 33 67888864332 233455555666555555555 445556777777
Q ss_pred HHHHhccCCCccCCceEEEEecc---CCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLG---NRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 256 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~ 256 (714)
+.|. ...+.+.++.|=|-- +..+ ....+.|.++|...+++.+. ..+++..|....|
T Consensus 76 ~~L~----~~~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 76 EKCI----EAGLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHH----hcCCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 7776 223445655554421 1112 45557888899999998763 2455666765544
No 145
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=65.68 E-value=12 Score=40.32 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=42.9
Q ss_pred ccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccC
Q 005109 309 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 360 (714)
Q Consensus 309 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N 360 (714)
|....|+.++|+..+.++.|.+..++++|.|+.. ..+.|+||.++.|.++.
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 3456788899999999987777788999999975 47899999999998763
No 146
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=64.96 E-value=13 Score=39.46 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=40.2
Q ss_pred CCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEecc
Q 005109 311 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 359 (714)
Q Consensus 311 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~ 359 (714)
...|+.+.|+..+.++.+.+...++++.|+. +..+.|+||.++.|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECC
Confidence 4567788999999998766667899999997 45789999999999865
No 147
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.43 E-value=72 Score=29.89 Aligned_cols=111 Identities=12% Similarity=0.018 Sum_probs=69.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
+.|+-|+.-|..-+..+.|...+-+.+ .++|+|+.-+.. .+++.+...+++.=+++.|+. +|...+.+....+.|
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~---GfeVi~lg~~~s-~e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~L 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADL---GFDVDVGPLFQT-PEEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKEL 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhC---CcEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHHH
Confidence 456777777777777777766664432 268888876543 234555556666656666666 666777888888888
Q ss_pred HhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005109 187 TEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 236 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g 236 (714)
.. ..+...+ |+.=|.-. +.-.+.|.++|..+++..|
T Consensus 78 ~~----~g~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 78 DK----LGRPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred Hh----cCCCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 62 2233333 44334332 1222458889999999877
No 148
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=58.94 E-value=30 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (714)
++++|+.++-.|++..++.+|.+.+...+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~ 29 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENG 29 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999997654
No 149
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.49 E-value=1.7e+02 Score=27.69 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=79.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHH-HhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 108 TIFFGTQTGTAEGFAKALADEA-RARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l-~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
.|+-|+--|..-...+.+-..+ ++.| ++|+|+--.-. -+++.+...+++.-++++|+. .|.--..+..+.+.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~G----feVi~LG~~v~-~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAG----FNVVNLGVLSP-QEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKC 76 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHH
Confidence 3566777787777777665554 4444 68888864332 345666677778878888888 677667788888888
Q ss_pred HhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHH
Q 005109 187 TEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 254 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~ 254 (714)
. ...+.+.. -++| |.-..+.=. ...+.+.|.++|..++|+.+.. .+++-.|..+
T Consensus 77 ~----~~gl~~~~-vivG-G~~vi~~~d--~~~~~~~l~~~Gv~~vF~pgt~------~~~iv~~l~~ 130 (134)
T TIGR01501 77 D----EAGLEGIL-LYVG-GNLVVGKQD--FPDVEKRFKEMGFDRVFAPGTP------PEVVIADLKK 130 (134)
T ss_pred H----HCCCCCCE-EEec-CCcCcChhh--hHHHHHHHHHcCCCEEECcCCC------HHHHHHHHHH
Confidence 6 23355544 3455 433221100 1234567889999999987632 4556666543
No 150
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=58.40 E-value=1.1e+02 Score=28.57 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=71.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~ 188 (714)
|+-|+--|..-...+.|-..+-+. ..++|+|+--.-+ .+++.+...+++.-+++.|+. .|.--..+++..+.|.
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~---~GfeVidLG~~v~-~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~- 75 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTE---AGFNVVNLGVLSP-QEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCD- 75 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHH---CCCEEEECCCCCC-HHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHH-
Confidence 566777777777777666555432 2268898865332 345666666777777777877 6666678888988886
Q ss_pred ccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005109 189 KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 236 (714)
Q Consensus 189 ~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g 236 (714)
...+...+ |+.=|.-.-+. .-.....+.|.++|..++++.|
T Consensus 76 ---~~gl~~v~--vivGG~~~i~~--~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 76 ---EAGLKDIL--LYVGGNLVVGK--QDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred ---HCCCCCCe--EEEECCCCCCh--hhhHHHHHHHHHcCCCEEECcC
Confidence 22344433 44334321100 0012234678899999999876
No 151
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=57.84 E-value=3.4 Score=37.04 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCChHHHHHHhcCCC-----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccC
Q 005109 475 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL 536 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~ 536 (714)
+.-+||++-+.+|.+ +.++|||+|+|. .+.+.+.|+. .|-.|..|.+..
T Consensus 29 ~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~~ 82 (105)
T PF08022_consen 29 KWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEHL 82 (105)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHHH
Confidence 455788775555643 678999999997 5788887753 266677776653
No 152
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=53.88 E-value=14 Score=35.57 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=35.0
Q ss_pred hhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCch
Q 005109 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY 210 (714)
Q Consensus 156 ~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y 210 (714)
++...+.++|++|-| ++.-|..-+.-++||...=.+..+--+.|+=+|=|+++|
T Consensus 83 ki~~aD~ivFvtPqY-N~gypA~LKNAlD~lyheW~gKPalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 83 KILEADSIVFVTPQY-NFGYPAPLKNALDWLYHEWAGKPALIVSYGGHGGGRCQY 136 (199)
T ss_pred HHhhcceEEEecccc-cCCCchHHHHHHHHhhhhhcCCceEEEEecCCCCchHHH
Confidence 456678899999999 777777888889999711011112224455556566665
No 153
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=53.77 E-value=33 Score=29.09 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcc
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (714)
+++|+.++-.||+..++.+|.+.+.+.+....+...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence 4789999999999999999999997655322334444444
No 154
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.27 E-value=25 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (714)
++|+++.||-.||+.-++.++.+.+.++|
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~g 31 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHN 31 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCC
Confidence 37999999999999999999999999887
No 155
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=53.26 E-value=2.6e+02 Score=28.33 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=84.9
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCcccc---------------------cc-------chH
Q 005109 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYA---------------------DE-------EDE 152 (714)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------------~~-------~~~ 152 (714)
|++|+++=+|..| -+..+++.+.+..++..+...+...||.+-. .+ -++
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 5678888888774 3566777777888777766666666663211 00 122
Q ss_pred HHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh---------ccCCCccCCceEEEEeccCCchhH----HHHHHHH
Q 005109 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE---------KEGGEWLQKLKYGVFGLGNRQYEH----FNKIAKV 219 (714)
Q Consensus 153 ~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~---------~~~~~~l~~~~~aVFGlGds~Y~~----f~~~~k~ 219 (714)
+.+++...+.+||+.|-| +-..|..-+.+++.+.. +-+.-.+.+++..++..=---|.+ ++-...-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 456678889999999999 88999999999998861 112234778888887421112533 5666677
Q ss_pred HHHHHHHcCCcc
Q 005109 220 VDEILANQGAKR 231 (714)
Q Consensus 220 ld~~L~~lGa~~ 231 (714)
+...|.=+|.+-
T Consensus 160 Lr~ilgF~Gitd 171 (202)
T COG1182 160 LRTILGFLGITD 171 (202)
T ss_pred HHHHhhhcCCCc
Confidence 777777778763
No 156
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=50.90 E-value=9.9 Score=34.86 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCc
Q 005109 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 556 (714)
Q Consensus 488 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F 556 (714)
+...|.|||.+-.. ..+++.|-+.++ ...|..|.|..+..+|+ .+-|..+.+.|
T Consensus 64 ~p~~R~YTvR~~d~-~~~~l~iDfv~H--------g~~Gpas~WA~~A~pGd------~v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDP-ETGELDIDFVLH--------GDEGPASRWARSARPGD------RVGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEET-T--EEEEEEE----------SS--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCcCEeeEcC-CCCEEEEEEEEC--------CCCCchHHHHhhCCCCC------EEEEeCCCCCC
Confidence 44579999988643 235666554322 12389999999999987 46777787776
No 157
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.29 E-value=43 Score=29.48 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=25.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (714)
+++|+++.|+--+|+ -+++++.+.+++++-
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHCCC
Confidence 578999999988877 689999999988773
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.08 E-value=2.5e+02 Score=25.17 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=61.8
Q ss_pred EEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
|+.++.-|..-.+...+...+-+ .| ++++++...- ...++.+.+.+.+.-+++.|++ .+.....+.++.+.++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G----~~V~~lg~~~-~~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~ 75 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAG----FEVIDLGVDV-PPEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELK 75 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCC----CEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHH
Confidence 45666677777777666655544 44 5677776433 2334445555555444444444 4555577888888886
Q ss_pred hccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005109 188 EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 236 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g 236 (714)
+ ....+.++.+=|.. ++... +.++++|+..+++-+
T Consensus 76 ~----~~~~~~~i~vGG~~------~~~~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 76 E----AGLDDIPVLVGGAI------VTRDF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred H----cCCCCCeEEEECCC------CChhH----HHHHHcCCeEEECCH
Confidence 2 11234555555532 22211 467788998887654
No 159
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=40.52 E-value=2.6e+02 Score=31.47 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc-cchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
..-+.|.|||.++++++.++.+.+ +| ..+.++++--+.+ +...+.+.+.+.+.++++=-++-.|..-.-..++
T Consensus 268 ad~~iV~~Gs~~~~a~ea~~~L~~----~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 268 AEVAIVALGTTYESAIVAAKEMRK----EG--IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred CCEEEEEEChhHHHHHHHHHHHHh----CC--CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 456888899999999888776643 34 3455666554432 2233445566777777775555444443455555
Q ss_pred HHHHHhccCCCccCCceE---EEEeccCCch--hHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWLQKLKY---GVFGLGNRQY--EHFNKIAKVVD 221 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~~k~ld 221 (714)
...|.... . +.... .++|+|.+.. +..-++.+++.
T Consensus 342 ~~al~~~~-~---~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~ 381 (407)
T PRK09622 342 TSAVYQTQ-G---TKHPVVSNYIYGLGGRDMTIAHLCEIFEELN 381 (407)
T ss_pred HHHHhccC-c---CCCceEeeeEECCCCCCCCHHHHHHHHHHHH
Confidence 55553110 0 01223 5778887665 44444444443
No 160
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=40.21 E-value=69 Score=30.13 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhh-cCCCeeEEecCccccc-cchHH-HHhhcCCCeEEEEEe
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD-EEDEY-EEKLKKENIVFFFLA 168 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~-~~~~~-~~~l~~~~~vif~~s 168 (714)
++|.|.|...+-.=++....|++.|++. |-.+.++..+..+... +-... ...+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4799999997777778899999999987 4221112222222111 11111 344667777777776
No 161
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=39.16 E-value=1.2e+02 Score=36.35 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=30.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDI 143 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl 143 (714)
.++++|+++|-.||+..+...|.+.+++.+.. .+++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~-~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLS-QISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCC-eeEEEEe
Confidence 57899999999999999999999999876522 2444443
No 162
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=37.37 E-value=55 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (714)
+++++.++-.|++..++.+|.+.+...+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~ 28 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELG 28 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCC
Confidence 4678888888999999999999998765
No 163
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=36.48 E-value=96 Score=27.34 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=42.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy 170 (714)
+++|+...|+-=||+-.++.++.+.|++++-...+....++++.. ..... =||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~-------~~~~a--Diiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA-------LTDGA--DIIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc-------CCCcc--cEEEEehH
Confidence 468999999999999999999999999987544555666665542 22233 46666665
No 164
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=36.09 E-value=29 Score=33.80 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 005109 195 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 251 (714)
Q Consensus 195 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W 251 (714)
+...+++|+=.||+..+.++..+..+..+|++.|++...-....|+...+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 456899999999999877888899999999999987443222233333344444444
No 165
>PRK05907 hypothetical protein; Provisional
Probab=35.01 E-value=4.5e+02 Score=28.42 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=68.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHH------hhcCCCeEEEEEeCCCCCCCC-ch
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEE------KLKKENIVFFFLATYGDGEPT-DN 178 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~------~l~~~~~vif~~sTyG~G~~p-dn 178 (714)
.++++||+++ +++.++|.+.+-... ...+|.++++.++ ..+ -+.+..++++--+ +.+. .+
T Consensus 19 ~~y~~~g~~~---~~~~~~l~~~~~~~~----~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~----~~~~~~~ 85 (311)
T PRK05907 19 PAVIVIGSSS---EEDKDIFIELLVSGR----KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA----EKMSSST 85 (311)
T ss_pred ceEEEecCCc---HHHHHHHHHHhCCCc----cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc----ccccccc
Confidence 7999999999 777777776653221 1346777666432 211 2344455544322 2333 36
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~ 258 (714)
.+.+.+++. +. ......-||.. .+++|.+.-|++.+ |+. + +. .++...-.+.++..|..+....
T Consensus 86 ~~~L~~Yl~----np-~~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v-~~-~~e~~~l~e~~L~~Wi~~~~~~ 149 (311)
T PRK05907 86 QEFLIRYAR----NP-NPHLTLFLFTT---KQECFSSLSKKLSS-----ALC-L-SL-FGEWFADRDKRIAQLLIQRAKE 149 (311)
T ss_pred HHHHHHHHh----CC-CCCeEEEEEEe---cccHHHHHHHHHhh-----cce-e-cc-ccccCCCCHHHHHHHHHHHHHH
Confidence 778888886 21 22234444653 27777766555543 221 1 00 0011223478899998876654
Q ss_pred HH
Q 005109 259 LD 260 (714)
Q Consensus 259 L~ 260 (714)
..
T Consensus 150 ~g 151 (311)
T PRK05907 150 LG 151 (311)
T ss_pred cC
Confidence 43
No 166
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.00 E-value=68 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=25.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (714)
|++|+++.|+-.+|+ -+|+++.+.++++|.
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~gi 30 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQGK 30 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHCCC
Confidence 468999999988666 999999998888773
No 167
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.95 E-value=72 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYD 134 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (714)
+|+++.|+--+|+ -+|+++.+.+++++.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~ 28 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGI 28 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCC
Confidence 4789999988888 689999999998773
No 168
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=33.70 E-value=1.4e+02 Score=35.16 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY 146 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~ 146 (714)
.++||++..||--||+-.++.++.+.|++++-...++-.++.+.
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev 548 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDY 548 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhC
Confidence 56789999999999999999999999999874333333444443
No 169
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=33.54 E-value=40 Score=29.38 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005109 59 TTSIAVLIGCVVVFILRR 76 (714)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~ 76 (714)
..+++++++|++|.+|||
T Consensus 74 ~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 74 FFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 355778888888998876
No 170
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=32.50 E-value=77 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (714)
++|+++.||--||+..++.+|.+.+...+
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~ 29 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAG 29 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999998765
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.19 E-value=2.7e+02 Score=26.59 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=62.8
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHh-hcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK-LKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~-l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
+|+|.==-+-|.... |+.+++.|.+.| ++|++.--+..- +|+... +.+.--+|.+|+++|... .-+....+
T Consensus 14 rvlvak~GlDgHd~g-akvia~~l~d~G----feVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~lve 85 (143)
T COG2185 14 RVLVAKLGLDGHDRG-AKVIARALADAG----FEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL--TLVPGLVE 85 (143)
T ss_pred eEEEeccCccccccc-hHHHHHHHHhCC----ceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHH--HHHHHHHH
Confidence 444442225666555 567777777765 466665544433 233333 345556677777765443 56777777
Q ss_pred HHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 236 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g 236 (714)
.|.. .-..... |++=|+-.-+. .+.|++.|..+++..+
T Consensus 86 ~lre----~G~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 86 ALRE----AGVEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHH----hCCcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 7762 2222222 44446655443 3577889999999875
No 172
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=29.60 E-value=1.3e+02 Score=25.93 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=27.8
Q ss_pred eEEeeeecccCCCCCCceeEEEEEecC--CCCccCCCCeeEEecc
Q 005109 317 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 359 (714)
Q Consensus 317 a~v~~~~~L~~~~~~r~~~hle~di~~--~~~~Y~~GD~l~v~p~ 359 (714)
+.|+..++++ .++.+++|.+++ ..+.|+||.++.|.-.
T Consensus 2 ~~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 5677777776 357888888874 3478999999999876
No 173
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=28.54 E-value=3.6e+02 Score=27.06 Aligned_cols=74 Identities=28% Similarity=0.354 Sum_probs=39.3
Q ss_pred eEEEEEeCCCc----hHHHHHHHHHHHHHhhcCCCeeEEec-CccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHH
Q 005109 106 KVTIFFGTQTG----TAEGFAKALADEARARYDKAIFKVVD-IDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (714)
Q Consensus 106 ~v~I~YgSqtG----tae~~A~~la~~l~~~~~~~~v~v~d-l~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~ 180 (714)
||+|++|.-+| ..+...+.|++.+.+.. ...+.+.+ .+.+. .+.|..++++||.... |+--+++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~-~~~v~~~~~~~~~~------~~~L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESE-GFEVTVTEDPDDLT------PENLKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTT-CEEEEECCSGGCTS------HHCHCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCC-CEEEEEEeCcccCC------hhHhcCCCEEEEECCC-CCcCCHHHHH
Confidence 68899998323 23456666666666332 23343332 22222 2468899987776555 2223445667
Q ss_pred HHHHHHH
Q 005109 181 RFYKWFT 187 (714)
Q Consensus 181 ~F~~~L~ 187 (714)
.|.++++
T Consensus 73 al~~~v~ 79 (217)
T PF06283_consen 73 ALRDYVE 79 (217)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777876
No 174
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=27.52 E-value=2e+02 Score=26.72 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy 170 (714)
..+|+|-|.+ .-+++.+++.+++.+.+.| ++|+|+.........|.-.-.+...-|++++++
T Consensus 40 ~~~VvVg~D~-R~~s~~~~~~~~~~l~~~G----~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaSh 101 (137)
T PF02878_consen 40 GSRVVVGRDT-RPSSPMLAKALAAGLRANG----VDVIDIGLVPTPALSFAIRQLNADGGIMITASH 101 (137)
T ss_dssp SSEEEEEE-S-STTHHHHHHHHHHHHHHTT----EEEEEEEEB-HHHHHHHHHHHTESEEEEE--TT
T ss_pred CCeEEEEEcc-cCCHHHHHHHHHHHHhhcc----cccccccccCcHHhhhhccccccceeeEEEecC
Confidence 4679999999 4567889999999999876 567777633322222222223467778888887
No 175
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.39 E-value=94 Score=31.40 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=67.0
Q ss_pred CCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhh
Q 005109 594 ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 673 (714)
Q Consensus 594 ~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M 673 (714)
+.|+.+|+-+||--...|+++.-|..+.+.+.- ..++||+|.=+....+ ++.-+..+.-.=++|..||+=|= .|
T Consensus 17 EqgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fshy~i~---~rKlG~~l~t~k~rgqlvF~dgl--~~ 90 (248)
T KOG4723|consen 17 EQGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSHYAIS---MRKLGMDLKTKKNRGQLVFIDGL--SM 90 (248)
T ss_pred CCccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhHHHHH---HHHhCCceeecccCCcEEEEhhh--hh
Confidence 348999999988766689999999888777643 6899999863321111 11111111111135667777764 12
Q ss_pred HHH--HHHHHH------HHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 674 ARD--VHRTLH------TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 674 ~~~--V~~~L~------~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.-+ +.+.-+ .-+...++-.-.--++..++.++.=|..+|+|
T Consensus 91 ~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 91 LFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred hhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 211 111111 11111222234455678888888999999988
No 176
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=26.89 E-value=5.9e+02 Score=28.85 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred eEEEEEeCCC-------chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchH---HHHhhc--CCCeEEEEEeCCCCC
Q 005109 106 KVTIFFGTQT-------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE---YEEKLK--KENIVFFFLATYGDG 173 (714)
Q Consensus 106 ~v~I~YgSqt-------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~---~~~~l~--~~~~vif~~sTyG~G 173 (714)
+|.++-+|+. ..+++.++++.+.|++.+ +++++......+..+ ..+.+. +-+.+|+.++|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP----VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC----ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4667777776 246666666766665442 455555433311111 122333 357888889999654
Q ss_pred CCCchHHHHHHHHHhccCCCccCCceEEEEeccCC--------chhHHHHHHHHHHHHHHHcCCccccccccccC-CCCc
Q 005109 174 EPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNR--------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDD-DQCI 244 (714)
Q Consensus 174 ~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~-~~~~ 244 (714)
. -....+. .+ ++.+.+++..+. .+.-+|+. ..+-..|.++|-+.-.-. |+. +...
T Consensus 78 ~------~~~~~~~------~~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~--g~~~d~~~ 141 (452)
T cd00578 78 K------MWIAGLS------EL-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVY--GHWKDEDV 141 (452)
T ss_pred H------HHHHHHH------hc-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEE--CCCCCHHH
Confidence 2 1222222 12 467788887764 24455644 667778888887754333 443 2345
Q ss_pred hhhHHHHHHH
Q 005109 245 EDDFSAWREL 254 (714)
Q Consensus 245 e~~f~~W~~~ 254 (714)
.+.+..|..-
T Consensus 142 ~~~i~~~~ra 151 (452)
T cd00578 142 LRKIESWARA 151 (452)
T ss_pred HHHHHHHHHH
Confidence 6678888764
No 177
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=26.62 E-value=2e+02 Score=26.14 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=54.3
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC--Cccc
Q 005109 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--TKEY 642 (714)
Q Consensus 565 piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~--~k~y 642 (714)
.++|||=-|++--+.++|++.-. ..+...|+-..+.. |..+ |.. ....++... .|++. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~-------~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv-~r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPA-------DAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWV-PRDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-T-------T-EEEEEEEESSGG-G--------------TEEEEEEE-E-SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCCC-------CCeEEEEEEECChH-hccc---CCC----CCCCEEEEE-eCCCCCchHHH
Confidence 47899999999889999988732 14677788777765 5332 222 223344443 44432 1111
Q ss_pred ccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 643 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+.+.+... .....+.+++++|- ..|++.+++.|.+
T Consensus 67 l~~al~~~-----~~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 LADALRDL-----PLPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHHHHTTS--------SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHh-----hccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 11122111 01145789999998 7899999888874
No 178
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=26.57 E-value=2.1e+02 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (714)
||+++.|+--||+-.+|++|.+.+.+++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~g 28 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELG 28 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhcc
Confidence 5889999999999999999999999887
No 179
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=26.10 E-value=37 Score=28.38 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=23.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhh
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARAR 132 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~ 132 (714)
+++|+.++-.|++..++.+|.+.+...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 688999999999999999999888543
No 180
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.09 E-value=2.1e+02 Score=26.43 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=41.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
+.+-+|+-.|+|+.++.++.+... ..+...+..++.-.. ...+.+.+++|+++ . .|+-.+.+.+..+++
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t~~~~~~~~~~~ 85 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRLEEKLESLIKEV 85 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-c--CChhHHHHHHHHHHH
Confidence 445578889999999998887742 223445555554221 23345555555554 3 334345577777777
Q ss_pred H
Q 005109 187 T 187 (714)
Q Consensus 187 ~ 187 (714)
+
T Consensus 86 ~ 86 (153)
T cd05009 86 K 86 (153)
T ss_pred H
Confidence 6
No 181
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.97 E-value=1.1e+02 Score=30.84 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 192 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 192 ~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+..+++++++|.|+|+ +++.+-+.|.+.|++-+
T Consensus 23 ~~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 4568999999999872 57778889999999754
No 182
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=25.78 E-value=1.1e+02 Score=33.86 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=31.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCC-CeeEEecCc
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDID 144 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl~ 144 (714)
.+++|+|+.+|-.|-=...|+.|++++..++.. ..+.++|+-
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~ 46 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLF 46 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehH
Confidence 467999999997767788899999999877532 345555553
No 183
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=25.28 E-value=1.2e+02 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccCCCCC-CceeEEEEEecCCCCccCCCCeeEEeccC
Q 005109 325 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 360 (714)
Q Consensus 325 L~~~~~~-r~~~hle~di~~~~~~Y~~GD~l~v~p~N 360 (714)
+..+++. ..+++|+|+..+....|+||.++.|.+.+
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444443 37999999887567899999999999765
No 184
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=24.43 E-value=3.7e+02 Score=27.00 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred HhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 155 ~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
..+..++.+||.+++ .+..|.+++. ......+.+.++.+.| ....+.|++.|-+..
T Consensus 48 ~~~~~~d~iiftS~~--------av~~~~~~~~-~~~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 48 LAALGADWVIFTSKN--------AVEFLLSALK-KKKLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred hhCCCCCEEEEECHH--------HHHHHHHHHH-hcCcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 345677876666543 4677788875 1112346778888887 445566667786643
No 185
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.76 E-value=5e+02 Score=23.54 Aligned_cols=109 Identities=13% Similarity=0.020 Sum_probs=61.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCe-EEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
|+.++--|---.+...+...+-+.. .++++++-...+. +++.+...+.+. +|.+|++ ++.....+..+.+.|.
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~---G~~vi~lG~~vp~-e~~~~~a~~~~~d~V~iS~~--~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA---GFEVIYTGLRQTP-EEIVEAAIQEDVDVIGLSSL--SGGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCH-HHHHHHHHHcCCCEEEEccc--chhhHHHHHHHHHHHH
Confidence 3455555666666666666654432 2577777654432 233344444443 4555554 4566667788888876
Q ss_pred hccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 005109 188 EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 237 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~ 237 (714)
...+.+.++.+=| . . .+...+.|.++|...++..+.
T Consensus 76 ----~~~~~~i~i~~GG--~-~-------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 ----ELGAGDILVVGGG--I-I-------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred ----hcCCCCCEEEEEC--C-C-------CHHHHHHHHHCCCCEEECCCC
Confidence 2223344444433 2 1 133446788899988887764
No 186
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.42 E-value=54 Score=30.52 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=33.9
Q ss_pred eEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 005109 199 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 251 (714)
Q Consensus 199 ~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W 251 (714)
+++|+-.||.-+ .-++..+..+.++|++.|.+........|+...+.+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888888765 44577788899999999987554333344333333444433
No 187
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=22.84 E-value=1.3e+02 Score=28.23 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=28.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEec
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVD 142 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~d 142 (714)
-.++|.|.|...+..|+.|.+-+..++ ..+.+..
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g--~~v~~~~ 57 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKG--INVEVVE 57 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 689999999999999999999999876 3355543
No 188
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.06 E-value=6.4e+02 Score=28.55 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCcc
Q 005109 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWL 195 (714)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l 195 (714)
.++++||+.|+++|++.+ | | .++++||.| -.+....-..+.++ -
T Consensus 319 ~~a~~~g~eIa~~Lk~dg----V--------D---------------AvILtstCg--tCtrcga~m~keiE-------~ 362 (431)
T TIGR01917 319 ANSKQFAKEFSKELLAAG----V--------D---------------AVILTSTUG--TCTRCGATMVKEIE-------R 362 (431)
T ss_pred HHHHHHHHHHHHHHHHcC----C--------C---------------EEEEcCCCC--cchhHHHHHHHHHH-------H
Confidence 346778888888887643 1 1 577888884 46677777788886 1
Q ss_pred CCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc-----cccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 196 QKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 196 ~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~-----~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
.|.....+.. ..- .-+..|+.|++| .-+||-..+.++...-=+.-+-.+|..+
T Consensus 363 ~GIPvV~i~~-----------~~p---I~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~AL~aL 420 (431)
T TIGR01917 363 AGIPVVHICT-----------VTP---IALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEKALKAL 420 (431)
T ss_pred cCCCEEEEee-----------chh---HHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 4566666651 122 233469999987 2345555555554433344455666654
No 189
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.01 E-value=1.3e+02 Score=24.56 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHH-HHHHHhhhhcC
Q 005109 55 VMILTTSIAVLIG-CVVVFILRRSS 78 (714)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (714)
+++.+.++.+++| .++|.+|++.-
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk~l 42 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQKTL 42 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455666667777 77777776543
No 190
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.91 E-value=1.4e+02 Score=27.68 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=38.4
Q ss_pred CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCe
Q 005109 660 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD---SSKAESMVKNLQMTGRY 709 (714)
Q Consensus 660 ~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~---~~~a~~~~~~l~~~gRy 709 (714)
++-.|---=| +.|..+|.+++.+|+.+--.+| .++..+++++|.++|+.
T Consensus 54 qdP~ItshMP-reML~dv~~~~~~il~~llelDI~HTS~~rdll~kl~kEGkl 105 (126)
T PF09921_consen 54 QDPMITSHMP-REMLEDVWETLREILEQLLELDIRHTSQFRDLLKKLAKEGKL 105 (126)
T ss_pred cCchhHhcCC-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 3444444557 8999999999999998865554 46889999999999974
No 191
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.70 E-value=5.2e+02 Score=26.66 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=33.4
Q ss_pred HhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 155 ~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
..+.+++.+||.+++ -.+.|.++|... .....+.+++..| ++..+.|.+.|-+..++
T Consensus 51 ~~l~~~d~iifTS~n--------aV~~~~~~l~~~--~~~~~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 51 LELDRYCAVIVVSKP--------AARLGLELLDRY--WPQPPQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred hcCCCCCEEEEECHH--------HHHHHHHHHHhh--CCCCcCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 457788876666543 255677777521 1223457777777 44455666778664443
No 192
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=20.60 E-value=5.2e+02 Score=27.14 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=32.7
Q ss_pred HHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 154 ~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
..+|.+++.+||.+++ -.+.|..++. ...+.+++++..| ++-.+.|++.|....+
T Consensus 64 l~~l~~~d~iiftS~N--------AV~~~~~~~~----~~~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 64 LRQALAAPIVVFTSPA--------AVRAAHRLLP----LQRPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred HhhcccCCEEEEECHH--------HHHHHHHHhc----ccCccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 3567788877766632 2344444331 2346778888887 4444566677876543
No 193
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=20.58 E-value=1.8e+02 Score=29.43 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=30.0
Q ss_pred eeEEeeeecccCCCCCCceeEEEEEecCC-CCccCCCCeeEEeccC
Q 005109 316 RSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCEN 360 (714)
Q Consensus 316 ~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~v~p~N 360 (714)
.++|+..+.++. .++++.|..+.. .+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 467777777753 478888887543 5799999999998654
No 194
>PHA03164 hypothetical protein; Provisional
Probab=20.40 E-value=2.7e+02 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=17.4
Q ss_pred hhhhhhccCc----hhhHHHHHHHHHHHH
Q 005109 43 EVASIVLDNK----EFVMILTTSIAVLIG 67 (714)
Q Consensus 43 ~~~~~~~~~~----~~~~~~~~~~~~~~~ 67 (714)
.-||.+|.|+ .++++.+.++++++.
T Consensus 45 rtawnlwnnrRktftFlvLtgLaIamILf 73 (88)
T PHA03164 45 RTAWNLWNNRRKTFTFLVLTGLAIAMILF 73 (88)
T ss_pred chhHHHHHhhhheeehHHHHHHHHHHHHH
Confidence 3589999974 356666777776655
Done!