Query 005109
Match_columns 714
No_of_seqs 456 out of 2882
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 2E-114 8E-119 1002.8 61.0 592 101-714 15-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 9E-109 3E-113 965.6 57.6 587 99-714 44-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 5E-104 2E-108 925.9 55.7 586 102-714 9-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 7.2E-86 2.5E-90 735.7 47.0 429 278-714 21-457 (458)
5 2qtl_A MSR;, methionine syntha 100.0 8.9E-81 3.1E-85 708.8 41.4 407 305-714 105-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 3.2E-78 1.1E-82 664.9 38.5 382 313-714 5-391 (393)
7 1f20_A Nitric-oxide synthase; 100.0 2.2E-76 7.4E-81 659.2 40.7 397 308-714 24-433 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 1.9E-74 6.5E-79 631.6 39.1 367 308-714 5-374 (374)
9 1fnb_A Ferredoxin-NADP+ reduct 100.0 5.1E-37 1.8E-41 328.2 26.5 273 308-714 31-314 (314)
10 2bmw_A Ferredoxin--NADP reduct 100.0 1.1E-36 3.7E-41 324.1 27.7 274 308-714 15-304 (304)
11 3vo2_A Putative uncharacterize 100.0 8.9E-36 3E-40 318.2 26.8 273 308-714 27-310 (310)
12 2b5o_A FNR, ferredoxin--NADP r 100.0 1.9E-35 6.4E-40 326.6 26.9 274 308-714 116-402 (402)
13 2rc5_A Ferredoxin-NADP reducta 100.0 4.9E-34 1.7E-38 305.1 24.8 277 309-714 16-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 5E-34 1.7E-38 304.6 17.8 227 476-714 61-311 (311)
15 3hr4_A Nitric oxide synthase, 100.0 1.1E-33 3.6E-38 284.9 16.7 153 102-265 38-190 (219)
16 3jqq_A Ferredoxin NADP reducta 100.0 9.1E-32 3.1E-36 288.0 24.0 291 308-714 9-316 (316)
17 1bvy_F Protein (cytochrome P45 99.9 1.6E-27 5.5E-32 236.5 15.1 148 102-260 19-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 4.8E-26 1.6E-30 221.2 14.5 151 102-263 7-157 (167)
19 1tvc_A Methane monooxygenase c 99.9 5.9E-25 2E-29 226.9 16.0 183 476-684 44-232 (250)
20 2hna_A Protein MIOC, flavodoxi 99.9 3.6E-26 1.2E-30 217.1 6.3 144 104-259 1-146 (147)
21 2r6h_A NADH:ubiquinone oxidore 99.9 1E-24 3.5E-29 229.8 14.2 181 489-684 84-277 (290)
22 2eix_A NADH-cytochrome B5 redu 99.9 1.1E-24 3.6E-29 223.8 13.2 185 476-684 42-233 (243)
23 1qfj_A Protein (flavin reducta 99.9 1.3E-24 4.5E-29 221.5 13.3 180 475-681 29-213 (232)
24 1fdr_A Flavodoxin reductase; f 99.9 1.9E-24 6.4E-29 222.6 12.1 187 475-684 30-229 (248)
25 1umk_A B5R, NADH-cytochrome B5 99.9 1.4E-24 4.8E-29 227.1 10.4 194 476-684 47-265 (275)
26 4eh1_A Flavohemoprotein; struc 99.9 6E-24 2E-28 218.0 14.2 182 475-684 33-223 (243)
27 1krh_A Benzoate 1,2-dioxygenas 99.9 6.8E-24 2.3E-28 228.8 14.9 181 475-684 138-323 (338)
28 3f6r_A Flavodoxin; FMN binding 99.9 5.4E-24 1.9E-28 202.0 11.6 142 104-257 1-146 (148)
29 1gvh_A Flavohemoprotein; oxido 99.9 1.6E-23 5.3E-28 230.8 16.1 179 476-683 183-377 (396)
30 4fk8_A Ferredoxin--NADP reduct 99.9 1.3E-24 4.5E-29 227.0 5.6 204 475-714 46-268 (271)
31 2bgi_A Ferredoxin-NADP(H) redu 99.9 1.1E-23 3.9E-28 220.2 11.5 185 476-683 44-247 (272)
32 4g1v_A Flavohemoglobin; three 99.9 4.4E-23 1.5E-27 227.5 15.7 182 477-684 185-378 (399)
33 2cnd_A NADH-dependent nitrate 99.9 1.3E-23 4.5E-28 219.0 10.1 194 475-683 42-258 (270)
34 2qdx_A Ferredoxin reductase; o 99.9 1E-23 3.6E-28 218.4 8.2 186 475-683 30-233 (257)
35 1cqx_A Flavohemoprotein; globi 99.9 4E-23 1.4E-27 228.1 13.0 188 476-684 185-384 (403)
36 1ep3_B Dihydroorotate dehydrog 99.9 2.8E-23 9.6E-28 216.1 10.9 171 476-683 34-211 (262)
37 1f4p_A Flavodoxin; electron tr 99.9 8E-22 2.7E-26 186.6 11.9 141 105-257 1-145 (147)
38 2pia_A Phthalate dioxygenase r 99.9 5.2E-22 1.8E-26 212.7 10.3 174 475-683 38-214 (321)
39 2wc1_A Flavodoxin; electron tr 99.8 1.2E-21 4.1E-26 192.7 9.1 146 104-262 1-179 (182)
40 1yob_A Flavodoxin 2, flavodoxi 99.8 2.7E-21 9.4E-26 189.7 9.8 143 105-260 1-176 (179)
41 2fcr_A Flavodoxin; electron tr 99.8 1.3E-20 4.4E-25 183.8 13.8 140 106-259 1-171 (173)
42 1ag9_A Flavodoxin; electron tr 99.8 9.3E-21 3.2E-25 185.2 11.0 143 105-261 1-169 (175)
43 2bmv_A Flavodoxin; electron tr 99.8 5E-21 1.7E-25 184.9 7.5 137 104-258 1-162 (164)
44 1obo_A Flavodoxin; electron tr 99.8 5.1E-20 1.7E-24 178.4 12.5 142 105-260 2-168 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 6.7E-20 2.3E-24 177.6 11.3 142 105-259 1-167 (169)
46 5nul_A Flavodoxin; electron tr 99.7 9.2E-18 3.2E-22 157.0 13.9 117 107-239 1-118 (138)
47 2gpj_A Siderophore-interacting 99.7 1.7E-17 5.9E-22 171.5 7.0 168 476-682 39-211 (252)
48 3hly_A Flavodoxin-like domain; 99.7 6.3E-17 2.1E-21 155.9 9.3 141 105-260 1-143 (161)
49 2xod_A NRDI protein, NRDI; fla 99.7 3.5E-17 1.2E-21 149.6 6.9 116 107-256 1-117 (119)
50 3fni_A Putative diflavin flavo 99.7 7.9E-17 2.7E-21 155.0 9.2 143 104-261 4-149 (159)
51 3a1f_A Cytochrome B-245 heavy 99.6 1.7E-16 5.9E-21 155.1 7.2 134 550-685 4-170 (186)
52 2fz5_A Flavodoxin; alpha/beta 99.6 1.5E-15 5.1E-20 141.1 12.3 131 107-255 2-134 (137)
53 1rlj_A NRDI protein; flavoprot 99.6 4E-16 1.4E-20 146.5 6.0 120 105-257 9-129 (139)
54 3lyu_A Putative hydrogenase; t 99.6 1E-15 3.6E-20 144.3 8.4 119 548-684 4-130 (142)
55 3lrx_A Putative hydrogenase; a 99.6 6.3E-16 2.2E-20 148.4 7.0 120 547-684 8-135 (158)
56 4dik_A Flavoprotein; TM0755, e 99.4 6E-13 2E-17 146.7 11.0 119 103-234 264-385 (410)
57 1e5d_A Rubredoxin\:oxygen oxid 99.4 2.8E-12 9.4E-17 140.7 13.4 146 104-262 252-399 (402)
58 2a5l_A Trp repressor binding p 99.4 4.5E-12 1.5E-16 125.4 13.5 128 104-234 5-145 (200)
59 1ycg_A Nitric oxide reductase; 99.4 1.6E-12 5.5E-17 142.4 11.2 119 104-235 251-369 (398)
60 2ark_A Flavodoxin; FMN, struct 99.3 9.4E-12 3.2E-16 122.5 14.8 149 104-263 4-169 (188)
61 3n3a_C Protein NRDI; ribonucle 99.3 3.9E-12 1.3E-16 119.6 9.9 98 104-225 20-122 (153)
62 2q9u_A A-type flavoprotein; fl 99.2 3.5E-11 1.2E-15 132.6 14.2 146 103-261 255-405 (414)
63 3b6i_A Flavoprotein WRBA; flav 99.2 3.7E-11 1.3E-15 118.5 12.8 125 104-233 1-140 (198)
64 3klb_A Putative flavoprotein; 99.2 5.1E-11 1.7E-15 114.6 11.3 133 104-255 4-160 (162)
65 2zki_A 199AA long hypothetical 99.2 8.9E-11 3E-15 116.1 13.1 125 104-233 4-143 (199)
66 2ohh_A Type A flavoprotein FPR 99.2 4.2E-11 1.4E-15 131.3 11.5 146 102-258 254-401 (404)
67 1ydg_A Trp repressor binding p 99.2 7.7E-11 2.6E-15 117.8 11.5 128 103-234 5-152 (211)
68 3d7n_A Flavodoxin, WRBA-like p 99.2 7.9E-11 2.7E-15 116.4 11.1 121 103-232 5-126 (193)
69 4ici_A Putative flavoprotein; 99.2 1.7E-10 5.7E-15 112.0 12.0 135 102-255 11-168 (171)
70 2vzf_A NADH-dependent FMN redu 99.1 1.7E-10 5.8E-15 114.3 10.2 122 104-233 2-137 (197)
71 1t5b_A Acyl carrier protein ph 99.0 2.9E-09 1E-13 105.0 14.7 156 104-261 1-197 (201)
72 3edo_A Flavoprotein, putative 98.9 3.6E-09 1.2E-13 100.3 9.1 127 104-252 3-150 (151)
73 1sqs_A Conserved hypothetical 98.8 3.2E-08 1.1E-12 101.1 13.6 152 104-260 1-178 (242)
74 1t0i_A YLR011WP; FMN binding p 98.8 6.9E-08 2.4E-12 94.6 13.9 120 105-233 1-149 (191)
75 1rtt_A Conserved hypothetical 98.8 3.6E-08 1.2E-12 97.0 11.8 124 104-233 6-143 (193)
76 3gfs_A FMN-dependent NADPH-azo 98.8 2.3E-08 7.9E-13 96.7 10.0 115 105-233 1-131 (174)
77 2hpv_A FMN-dependent NADH-azor 98.6 3.5E-07 1.2E-11 90.8 15.2 156 104-261 1-203 (208)
78 2q62_A ARSH; alpha/beta, flavo 98.5 1.2E-06 4E-11 89.8 16.0 126 102-232 32-169 (247)
79 1rli_A Trp repressor binding p 98.4 1.3E-06 4.3E-11 84.7 12.5 122 104-233 3-152 (184)
80 3fvw_A Putative NAD(P)H-depend 98.4 2.5E-06 8.7E-11 83.9 14.3 125 104-234 2-145 (192)
81 2fzv_A Putative arsenical resi 98.4 2.6E-06 8.8E-11 88.6 14.6 126 102-232 56-194 (279)
82 3k1y_A Oxidoreductase; structu 98.4 2.5E-06 8.7E-11 83.9 12.9 126 102-233 9-153 (191)
83 3r6w_A FMN-dependent NADH-azor 98.4 6.2E-06 2.1E-10 82.2 15.4 156 104-261 1-207 (212)
84 3rpe_A MDAB, modulator of drug 98.3 1.6E-05 5.4E-10 79.8 17.1 156 102-263 23-216 (218)
85 4hs4_A Chromate reductase; tri 98.3 1.1E-05 3.7E-10 79.9 14.3 124 104-233 6-144 (199)
86 3lcm_A SMU.1420, putative oxid 98.2 8E-06 2.7E-10 80.6 12.9 155 105-263 1-189 (196)
87 3f2v_A General stress protein 98.2 1.2E-05 4E-10 79.2 12.9 156 104-262 1-181 (192)
88 3s2y_A Chromate reductase; ura 97.5 2.3E-07 8E-12 92.0 0.0 124 104-233 6-144 (199)
89 2amj_A Modulator of drug activ 98.2 4.8E-05 1.6E-09 75.5 16.5 149 103-255 11-199 (204)
90 1d4a_A DT-diaphorase, quinone 98.1 2.5E-05 8.5E-10 81.2 14.8 157 104-263 2-215 (273)
91 3p0r_A Azoreductase; structura 98.1 2.7E-05 9.1E-10 77.7 14.5 157 104-262 4-207 (211)
92 3tem_A Ribosyldihydronicotinam 98.1 3.6E-05 1.2E-09 77.8 13.8 157 105-264 2-215 (228)
93 3u7r_A NADPH-dependent FMN red 98.0 0.00017 5.8E-09 70.8 16.5 124 104-232 2-138 (190)
94 3u7i_A FMN-dependent NADH-azor 97.9 0.00026 8.8E-09 71.2 16.0 160 103-263 3-214 (223)
95 3ha2_A NADPH-quinone reductase 97.9 0.00014 4.8E-09 70.5 13.0 149 105-261 1-166 (177)
96 3svl_A Protein YIEF; E. coli C 97.8 0.00014 4.7E-09 71.5 12.8 154 104-263 4-183 (193)
97 3l9w_A Glutathione-regulated p 97.6 0.00066 2.2E-08 74.6 14.3 156 104-263 236-408 (413)
98 4gi5_A Quinone reductase; prot 97.2 0.0039 1.3E-07 64.7 13.7 158 103-263 21-242 (280)
99 1tvm_A PTS system, galactitol- 79.6 3.7 0.00013 36.1 6.6 46 102-147 19-64 (113)
100 1e2b_A Enzyme IIB-cellobiose; 66.7 8.1 0.00028 33.5 5.5 58 104-170 3-60 (106)
101 2l2q_A PTS system, cellobiose- 60.9 10 0.00035 32.9 5.0 41 105-146 5-45 (109)
102 1ccw_A Protein (glutamate muta 59.4 17 0.00057 32.8 6.4 110 109-236 6-120 (137)
103 3czc_A RMPB; alpha/beta sandwi 52.8 13 0.00044 32.3 4.3 43 103-145 17-60 (110)
104 3lo8_A Ferredoxin--NADP reduct 52.3 24 0.00082 36.1 7.0 51 309-360 23-73 (311)
105 2l2t_A Receptor tyrosine-prote 48.0 23 0.0008 25.7 4.1 20 60-79 20-39 (44)
106 1vkr_A Mannitol-specific PTS s 45.8 31 0.0011 30.7 5.7 44 103-146 12-56 (125)
107 3rht_A (gatase1)-like protein; 45.2 31 0.001 34.9 6.2 75 103-187 3-77 (259)
108 2ks1_B Epidermal growth factor 44.5 27 0.00093 25.3 4.1 15 65-79 26-40 (44)
109 2jwa_A Receptor tyrosine-prote 43.0 26 0.0009 25.4 3.8 18 62-79 23-40 (44)
110 3nbm_A PTS system, lactose-spe 36.3 75 0.0026 27.4 6.5 56 104-170 6-63 (108)
111 4e5v_A Putative THUA-like prot 35.9 1.7E+02 0.0057 29.7 10.1 81 104-187 4-84 (281)
112 1t0b_A THUA-like protein; treh 32.3 1.9E+02 0.0063 28.7 9.7 91 104-206 7-106 (252)
113 3ju3_A Probable 2-oxoacid ferr 28.4 45 0.0015 29.1 3.8 57 104-166 14-71 (118)
114 1mkz_A Molybdenum cofactor bio 28.4 45 0.0015 31.2 4.0 57 195-251 8-64 (172)
115 3s2u_A UDP-N-acetylglucosamine 28.2 43 0.0015 35.0 4.3 26 564-589 3-30 (365)
116 3pzy_A MOG; ssgcid, seattle st 24.3 35 0.0012 31.8 2.4 57 195-252 5-63 (164)
117 2xpn_B SPT6, chromatin structu 23.9 33 0.0011 21.4 1.3 12 197-208 3-14 (26)
118 2pjk_A 178AA long hypothetical 21.3 23 0.0008 33.5 0.5 41 193-233 11-58 (178)
119 3c6c_A 3-keto-5-aminohexanoate 20.3 1.5E+02 0.0051 30.7 6.4 88 117-211 164-252 (316)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=2.3e-114 Score=1002.77 Aligned_cols=592 Identities=41% Similarity=0.750 Sum_probs=516.3
Q ss_pred ccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhc--CCCeEEEEEeCCCCCCCCch
Q 005109 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDN 178 (714)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~pdn 178 (714)
...+++|+|+|||||||||.+|++|++++.+.| ..++++|+++++.++ ...+. +++.+||++||||+|++|+|
T Consensus 15 ~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT~G~G~~pd~ 89 (618)
T 3qe2_A 15 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLAD---LSSLPEIDNALVVFCMATYGEGDPTDN 89 (618)
T ss_dssp HHHTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEECBGGGBCCGG
T ss_pred HhcCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHH---hhhcccccCcEEEEEcCccCCCCCCHH
Confidence 344678999999999999999999999998776 457899999998754 22222 57899999999999999999
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~ 258 (714)
|+.|++||... ...|++++||||||||++|+|||+++|.++++|+++||++++|+|+||++.+++++|+.|++++|++
T Consensus 90 ~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~ 167 (618)
T 3qe2_A 90 AQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLA 167 (618)
T ss_dssp GHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHH
Confidence 99999999832 1569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCccccccceEEEEecCCCcc---cCc--cccCCCCCCccccCCCCeeeEEeeeecccCCCCCCc
Q 005109 259 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRS 333 (714)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~ 333 (714)
|.+.++.+... .....+.|++......... ..+ ......+....|+.++|+.|+|+.|++|+. .++|+
T Consensus 168 l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~ 240 (618)
T 3qe2_A 168 VCEHFGVEATG------EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERH 240 (618)
T ss_dssp HHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSC
T ss_pred HHHHhCCCccc------ccccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCc
Confidence 99987532111 0112356676654321110 000 000112234567788999999999999985 57899
Q ss_pred eeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHh
Q 005109 334 CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTK 412 (714)
Q Consensus 334 ~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~ 412 (714)
|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.+.++..++. ...+.||| |||++++|++
T Consensus 241 ~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~ 314 (618)
T 3qe2_A 241 LMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTY 314 (618)
T ss_dssp EEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHH
T ss_pred EEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999865432 23466899 9999999999
Q ss_pred cccccCCccHHHHHHHHHHcCCHhHHHHHHHhc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCc
Q 005109 413 YADLLSSPKKSALLALAAHASDPTEADRLRHLA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 490 (714)
Q Consensus 413 ~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~--s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~ 490 (714)
|+||+++|+|++|+.||+||+|+.||++|++|+ +++|+++|.+|+.+.+++++|+|++||++++|+++|++. +|+++
T Consensus 315 ~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~ 393 (618)
T 3qe2_A 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQ 393 (618)
T ss_dssp TBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCC
T ss_pred EeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-ccccc
Confidence 999999999999999999999999999999999 788999999999999999999999999999999999975 59999
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC-CCCCCCCceeeEEEecCCccCCCCCCCCeEEE
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~-g~~~~~~~~v~i~v~~~~F~lp~~~~~piImI 569 (714)
||+|||||+|..++++++|+|++|.+.++.++.+.|+||+||+++.+ |+. .....++|++|.|.|++|.++.+|+|||
T Consensus 394 pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piimI 472 (618)
T 3qe2_A 394 ARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIMV 472 (618)
T ss_dssp CEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred cceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEEE
Confidence 99999999998778999999999988888899999999999999988 441 1112689999999999998888999999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+||||||||||+|++...+..+...++++||||||+++.|++|++||++|.+.+.+++++++|||++..|+||||+|.+
T Consensus 473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~ 552 (618)
T 3qe2_A 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQ 552 (618)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHH
Confidence 99999999999999998765554455899999999999559999999999999999889999999998889999999999
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 553 ~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 553 DREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp THHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 99999998888999999999559999999999999999999999999999999999999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=9.4e-109 Score=965.63 Aligned_cols=587 Identities=33% Similarity=0.600 Sum_probs=505.4
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHH-hhcCCCeeEEecCccccccchHHHHhhcCC-CeEEEEEeCCCCCCCC
Q 005109 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPT 176 (714)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyG~G~~p 176 (714)
+....+++++|+|||||||||++|++|++++. +.| ..+.++|+++++.+ ++..+ +.+||++||||+|++|
T Consensus 44 ~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p 115 (682)
T 2bpo_A 44 VVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFP 115 (682)
T ss_dssp HHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCC
T ss_pred HHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCC
Confidence 34456789999999999999999999999998 655 56789999999864 46678 9999999999999999
Q ss_pred chHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC-CchhhHHHHHHHH
Q 005109 177 DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWRELV 255 (714)
Q Consensus 177 dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~-~~e~~f~~W~~~l 255 (714)
+|+..|++||.... ...|++++|||||+||++|+|||.++|.++++|+++||+++.|++++|++. +.+++|++|.++|
T Consensus 116 ~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l 194 (682)
T 2bpo_A 116 DGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSI 194 (682)
T ss_dssp SSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHH
Confidence 99999999998321 235899999999999999999999999999999999999999999999874 7899999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCcccCccc---cCC--------CCCCccccCCCCeeeEEeee
Q 005109 256 WPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAVR 322 (714)
Q Consensus 256 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~~ 322 (714)
|++|.+.+..+... . ...|.|++...+. ......+.. ... .+....|+.++|+.|+|+.+
T Consensus 195 ~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~ 267 (682)
T 2bpo_A 195 LEVLKDELHLDEQE----A---KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKS 267 (682)
T ss_dssp HHHHHHHTTCCCCC----C---CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEEE
T ss_pred HHHHHhhcCCcccc----c---ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEEE
Confidence 99999887532211 0 1123344433221 000000000 000 01234577889999999999
Q ss_pred ecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC
Q 005109 323 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 402 (714)
Q Consensus 323 ~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p 402 (714)
++|+. +++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..++ ..+.|||
T Consensus 268 ~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~p 338 (682)
T 2bpo_A 268 RELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPFP 338 (682)
T ss_dssp EECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSSC
T ss_pred EEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCCC
Confidence 99998 88999999999999999999999999999999999999999999999999999875432 2456899
Q ss_pred -cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCCC
Q 005109 403 -PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKPP 477 (714)
Q Consensus 403 -p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp----s~~~p 477 (714)
|||++++|++|+||+++|+|++|+.||+||+|++||++|++|+ +|+++|.+|+...++|++|+|.+|| ++++|
T Consensus 339 ~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p 416 (682)
T 2bpo_A 339 TPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVP 416 (682)
T ss_dssp SSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSC
T ss_pred CCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCC
Confidence 9999999999999999999999999999999999999999998 6999999999999999999999999 88999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC---CccccCccchhhcccCCC------------CCCC
Q 005109 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKSN 542 (714)
Q Consensus 478 ~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~---gr~~~G~~S~~L~~~~~g------------~~~~ 542 (714)
+++++.. +|+++||+|||||+|..++++++|+|+++.+.++. ++.+.|+||+||+++.++ +...
T Consensus 417 ~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~ 495 (682)
T 2bpo_A 417 MQFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYD 495 (682)
T ss_dssp HHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCC
T ss_pred HHHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccccccee
Confidence 9998865 69999999999999987789999999988887775 678899999999987662 2111
Q ss_pred C--------CceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh------cCCCCCcEEEEEeeecCC
Q 005109 543 D--------CSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRK 608 (714)
Q Consensus 543 ~--------~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~------~~~~~~~~~Lf~G~R~~~ 608 (714)
. +..++++++.+.|+||.++.+|+||||+||||||||||+|++...+. .+...++++||||||++.
T Consensus 496 i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~ 575 (682)
T 2bpo_A 496 LNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD 575 (682)
T ss_dssp SSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSS
T ss_pred eccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChh
Confidence 0 13688999989999998888999999999999999999999988664 333458999999999995
Q ss_pred cccchHHHHHHHH-HcCCCcEEEEEEec-CCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHH
Q 005109 609 MDYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 686 (714)
Q Consensus 609 ~D~ly~dEL~~~~-~~g~~~~l~~a~Sr-~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~ 686 (714)
|++|++||++|+ +.+.+++++++||| ++..++||||+|.++++.+++++.++++||||||+++|+++|+++|.+|++
T Consensus 576 -D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~ 654 (682)
T 2bpo_A 576 -DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILS 654 (682)
T ss_dssp -SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHH
Confidence 999999999995 55778899999999 566899999999999999999887899999999977999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 687 EQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 687 ~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++++++.++|++|+++|+++|||++|||
T Consensus 655 ~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 655 RGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 9999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=4.8e-104 Score=925.87 Aligned_cols=586 Identities=31% Similarity=0.581 Sum_probs=494.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ +|..++++||++||||+|+||+|++.
T Consensus 9 ~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~~ 79 (688)
T 1tll_A 9 AKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGEK 79 (688)
T ss_dssp CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGHH
T ss_pred cCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHHH
Confidence 34578999999999999999999999986 33 56899999999864 46788999999999999999999999
Q ss_pred HHHHHHhcc----------------------------------------CCCccCCceEEEEeccCCchhHHHHHHHHHH
Q 005109 182 FYKWFTEKE----------------------------------------GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVD 221 (714)
Q Consensus 182 F~~~L~~~~----------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld 221 (714)
|++||.... ....|+|++||||||||++|+|||++++.+|
T Consensus 80 F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld 159 (688)
T 1tll_A 80 FGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVD 159 (688)
T ss_dssp HHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHH
T ss_pred HHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHH
Confidence 999998320 0235899999999999999999999999999
Q ss_pred HHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCC---C---CCc-cccccceEEEEecCCCcc
Q 005109 222 EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTV---S---TPY-TAAISEYRVVFYDNADAS 294 (714)
Q Consensus 222 ~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~~~ 294 (714)
++|+++||++++++++||+..+.+++|+.|.+++|++|++.+......... . .+. ....+.+++.........
T Consensus 160 ~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (688)
T 1tll_A 160 TLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPDL 239 (688)
T ss_dssp HHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCCH
T ss_pred HHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEecccccccc
Confidence 999999999999999999988899999999999999999876432111000 0 000 011234555442211000
Q ss_pred cCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCC-CCccCCCCeeEEeccCCHHHHHHHHHHhC
Q 005109 295 VGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLG 373 (714)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~ 373 (714)
......+..++|+.++|+.+++|+.++++|+|+||+||++++ +++|+|||||+|||.|+++.|+++|++||
T Consensus 240 --------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~ 311 (688)
T 1tll_A 240 --------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLE 311 (688)
T ss_dssp --------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTCS
T ss_pred --------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHhC
Confidence 000112445789999999999999999999999999999875 79999999999999999999999999998
Q ss_pred C--CCCcEEEEeeCCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCcc
Q 005109 374 L--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 448 (714)
Q Consensus 374 l--~~d~~~~i~~~~~~~~~~~---~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~ 448 (714)
+ ++|+.+.++..++..+|.+ ....+.+|||||++++|++|+||+++|+|.+|+.||+||+|+.||++|++|++
T Consensus 312 ~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~-- 389 (688)
T 1tll_A 312 DAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK-- 389 (688)
T ss_dssp SCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--
T ss_pred CCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc--
Confidence 6 6889999875422222211 11234577899999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccC
Q 005109 449 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKG 526 (714)
Q Consensus 449 g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G 526 (714)
+++.|.+|+...+++++|+|.+||++++|+++++.. +|++++|+|||||+|..++++++|+|+++.+.++. ++.+.|
T Consensus 390 ~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G 468 (688)
T 1tll_A 390 GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHG 468 (688)
T ss_dssp CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEEC
T ss_pred CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCC
Confidence 789999999999999999999999999999988865 69999999999999986678999999988776554 467889
Q ss_pred ccchhhcccCCCCCCCCCceeeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEee
Q 005109 527 LCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGC 604 (714)
Q Consensus 527 ~~S~~L~~~~~g~~~~~~~~v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~ 604 (714)
.||+||+++.+|+ .++|+++ .+.|.+|.++.+|+||||+|||||||++|+|++..... .+...++++|||||
T Consensus 469 ~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~ 542 (688)
T 1tll_A 469 VCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGC 542 (688)
T ss_dssp HHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEE
T ss_pred chhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEe
Confidence 9999999887765 6889985 55899998888999999999999999999999987532 12234799999999
Q ss_pred ecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC-cccccchhhhc-hHHHHhcc-cCCcEEEEecCchhhHHHHHHHH
Q 005109 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTL 681 (714)
Q Consensus 605 R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~-k~yVq~~l~e~-~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L 681 (714)
|+++.|++|++||++|.+.+.+++++++|||++.. ++||||+|.++ ...+++++ ..+++|||||| .+|+++|.++|
T Consensus 543 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~L 621 (688)
T 1tll_A 543 RQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAI 621 (688)
T ss_dssp SCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHHH
Confidence 99976899999999999999888999999998764 89999999988 77788766 57899999999 68999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 682 HTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 682 ~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++++++|+++.++|++|+++|+.++||++|+|
T Consensus 622 ~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 622 QRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 999999999999999999999999999999998
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=7.2e-86 Score=735.67 Aligned_cols=429 Identities=41% Similarity=0.763 Sum_probs=382.1
Q ss_pred ccccceEEEEecCCCcc---cCcc--ccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCC
Q 005109 278 AAISEYRVVFYDNADAS---VGEK--SWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 352 (714)
Q Consensus 278 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 352 (714)
..+++|+++.+++.+.. ..+. .....++..+|+.++||.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 45688999988754422 1121 11334567789999999999999999997 578999999999999999999999
Q ss_pred eeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHH
Q 005109 353 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 431 (714)
Q Consensus 353 ~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~ 431 (714)
||+|||.|+++.|++++++||+++|+.++++..+.. ...+.||| |||++++|++|+||+++|+|+||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864432 23466899 99999999999999999999999999999
Q ss_pred cCCHhHHHHHHHhcC--ccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEE
Q 005109 432 ASDPTEADRLRHLAS--PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 509 (714)
Q Consensus 432 ~~d~~ek~~L~~l~s--~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~l 509 (714)
|+|+.||++|++|++ ++|+++|.+|+.+.+++++|||.+||++++|+++|++. +|+++||+|||||+|..++++++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 999999999999987 47899999999999999999999999999999999975 599999999999999877899999
Q ss_pred EEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhh
Q 005109 510 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 589 (714)
Q Consensus 510 tv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~ 589 (714)
+|++|.+.+..++.+.|+||+||+++.++++...+..++++++.|.|++|.++.+|+||||+|||||||++|+|++..+.
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999888888999999999999999887642222258899999999999888899999999999999999999987654
Q ss_pred hcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecC
Q 005109 590 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 669 (714)
Q Consensus 590 ~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGp 669 (714)
+.+...++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++.+.+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434579999999999755999999999999999888999999999888999999999999999998888999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 670 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 670 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=8.9e-81 Score=708.81 Aligned_cols=407 Identities=34% Similarity=0.622 Sum_probs=355.7
Q ss_pred CCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCC--CcEEEE
Q 005109 305 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 382 (714)
Q Consensus 305 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~--d~~~~i 382 (714)
+..+|+.++|+.|+|+.+++|+.++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999985 567888
Q ss_pred eeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcC
Q 005109 383 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 461 (714)
Q Consensus 383 ~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 461 (714)
+..++... .+..++++|| |||++++|++|+||+++|+|.||+.||+||+|+.||++|.+|++++|+++|.+|+...+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 76543221 1346788999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEec--CCCCccccCccchhhccc----
Q 005109 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK--TPTGRVHKGLCSTWMKNS---- 535 (714)
Q Consensus 462 ~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~--~~~gr~~~G~~S~~L~~~---- 535 (714)
++++|+|.+||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+. +..++.+.|+||+||+++
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999975 59999999999999976679999999988664 445577889999999998
Q ss_pred -------CCCCC-CCCCceeeEEEecC-CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC--CCCCcEEEEEee
Q 005109 536 -------LPMEK-SNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 604 (714)
Q Consensus 536 -------~~g~~-~~~~~~v~i~v~~~-~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~~Lf~G~ 604 (714)
.+|+. ...+..++|++|.| .|++|.++.+|+||||+||||||||||+|+|....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 44430 01122688999864 89999888899999999999999999999987655332 234899999999
Q ss_pred ecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHH
Q 005109 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 677 (714)
Q Consensus 605 R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V 677 (714)
|+++.|++|++||++|.+.+.+++++++|||++. .++||||+|.++...+|+++ .++++||||||+++|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9995599999999999999998899999999976 79999999999999999988 5689999999955999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 678 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 678 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=3.2e-78 Score=664.93 Aligned_cols=382 Identities=34% Similarity=0.613 Sum_probs=339.5
Q ss_pred CCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCC
Q 005109 313 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 392 (714)
Q Consensus 313 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~ 392 (714)
.++.|+|+.|++|+.++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++|+.+.++....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 577899999999999999999999999997 58999999999999999999999999999999999887753221
Q ss_pred CCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 005109 393 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 471 (714)
Q Consensus 393 ~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~f 471 (714)
.....|++ |||++++|++ +||+++|+|++|+.||+||+|+.+|++|++|++. +.|.+|+...+++++|+|.+|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 11244678 9999999999 9999999999999999999999999999999873 479999999999999999999
Q ss_pred CCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCc-cccCccchhhcccCCCCCCCCCceeeEE
Q 005109 472 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 472 ps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr-~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
|++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.+..|+ .+.|+||+||+++.+|+ .+.++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999975 6999999999999998778999999998877666554 46799999999987765 56765
Q ss_pred Ee--cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 551 VR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 551 v~--~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
++ .|.|++|.++.+|+||||+|||||||+||+|++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 54 68999998888999999999999999999999876655554567899999999964599999999999988765 7
Q ss_pred EEEEEec-CCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 005109 629 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 707 (714)
Q Consensus 629 l~~a~Sr-~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~g 707 (714)
++++||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 566899999999999999999888899999999978899999999999999999999999999999999999
Q ss_pred CeEEecC
Q 005109 708 RYLRDVW 714 (714)
Q Consensus 708 Ry~~DvW 714 (714)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=2.2e-76 Score=659.19 Aligned_cols=397 Identities=34% Similarity=0.635 Sum_probs=351.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCC-CCccCCCCeeEEeccCCHHHHHHHHHHhCC--CCCcEEEEee
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 384 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 384 (714)
.++.++|+.|+|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||+ ++|+.+.++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4667899999999999999999999999999999875 799999999999999999999999999976 7799998875
Q ss_pred CCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcC
Q 005109 385 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 461 (714)
Q Consensus 385 ~~~~~~~~~---~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 461 (714)
.+++.++.+ ....+.+|||||++++|++|+||+++|+|.+|+.||+||+|++||++|++|++ ++++|.+|+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~ 181 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKN 181 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccC
Confidence 322111111 01235678899999999999999999999999999999999999999999986 7899999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccCccchhhcccCCCC
Q 005109 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPME 539 (714)
Q Consensus 462 ~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G~~S~~L~~~~~g~ 539 (714)
++++|+|.+||++++|+++++.. +|++++|+|||||+|..++++++|+|+++.+.++. |+.+.|.||+||+++.+|+
T Consensus 182 ~~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd 260 (435)
T 1f20_A 182 PTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD 260 (435)
T ss_dssp CCHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC
T ss_pred CCHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC
Confidence 99999999999999999999975 59999999999999986678999999988776654 3677899999999887765
Q ss_pred CCCCCceeeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeecCCcccchHHHH
Q 005109 540 KSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDEL 617 (714)
Q Consensus 540 ~~~~~~~v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL 617 (714)
.+.|+++ .|.|.+|.++.+|+||||+|||||||+||+|++..... .+...++++||||||+++.|++|++||
T Consensus 261 ------~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El 334 (435)
T 1f20_A 261 ------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 334 (435)
T ss_dssp ------EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHH
T ss_pred ------EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHH
Confidence 6889885 56999998888999999999999999999999987531 122348999999999997789999999
Q ss_pred HHHHHcCCCcEEEEEEecCCCC-cccccchhhhc-hHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005109 618 NNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 694 (714)
Q Consensus 618 ~~~~~~g~~~~l~~a~Sr~~~~-k~yVq~~l~e~-~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 694 (714)
++|.+.+.+++++++|||++.. ++|||++|.++ ...+++++ ..+++|||||| ++|+++|.++|.+++.++++++.+
T Consensus 335 ~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~ 413 (435)
T 1f20_A 335 LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEE 413 (435)
T ss_dssp HHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999888999999998754 89999999987 77788776 57899999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHCCCeEEecC
Q 005109 695 KAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 695 ~a~~~~~~l~~~gRy~~DvW 714 (714)
+|++|+++|+++|||++|||
T Consensus 414 ~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 414 DAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 99999999999999999999
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.9e-74 Score=631.65 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=335.8
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+.++|+.|+|+.|++|+.++++|+|+||+||+++++++|+|||||+|+|+|+++.|+++|++||+++|+.+.+.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+ .|||++++|++|+||+ +|+|++|+.||+||+|++ |++|++ +++.|.+|+. +++++|+
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1799999999999999 899999999999999974 888874 7889999987 5899999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCce
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 546 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~ 546 (714)
|.+||+ ++++|||+.+ .+++++|+|||||+|..+++.++|+|+++.+.+. ++.+.|+||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l-~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhh-ccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 9999999975 4789999999999998667899999998866655 67788999999998 76665 6
Q ss_pred eeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC
Q 005109 547 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625 (714)
Q Consensus 547 v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~ 625 (714)
+.+.++ .+.|.+|.++.+|+||||+|||||||+||++++...+. .++++||||||+++.|++|++||++|.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 888885 56899998888999999999999999999999987642 2789999999998449999999999999998
Q ss_pred CcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEec-CchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005109 626 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 704 (714)
Q Consensus 626 ~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCG-pa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 704 (714)
+++++++|||++..++|||++|.++.+.+++++.++++||||| | ++|+++|+++|.++++++++++.++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999999888998887799999999 6 8999999999999999999999999999999999
Q ss_pred HCCCeEEecC
Q 005109 705 MTGRYLRDVW 714 (714)
Q Consensus 705 ~~gRy~~DvW 714 (714)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
No 9
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=5.1e-37 Score=328.25 Aligned_cols=273 Identities=24% Similarity=0.450 Sum_probs=222.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|+++|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 3556778899999999999877788999999998754 89999999999876521 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
.|
T Consensus 86 ------------------------------------------------------------~g------------------ 87 (314)
T 1fnb_A 86 ------------------------------------------------------------NG------------------ 87 (314)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||+|+|.. +++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd----- 143 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA----- 143 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC-----
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC-----
Confidence 0236899999999863 3578999998765656666667899999999987765
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++.+
T Consensus 144 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 144 -EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 578888888764 56555789999999999999999999987543111 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
.+. .+++++++||++. .++|||++|.+....+++.+. .++.||+||| ++|+++|.+.|.+++.+.| . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999753 578999999887777776553 6889999999 8999999999999998865 2 57
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++|+++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=1.1e-36 Score=324.08 Aligned_cols=274 Identities=25% Similarity=0.451 Sum_probs=221.8
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.++...|+.+.|+.+++++..++.++++|++|++++..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778899999999999888888999999998866789999999999887621 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+ |
T Consensus 71 ~------------------------------------------------------------g------------------ 72 (304)
T 2bmw_A 71 N------------------------------------------------------------G------------------ 72 (304)
T ss_dssp T------------------------------------------------------------S------------------
T ss_pred c------------------------------------------------------------C------------------
Confidence 0 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCC-CccccCccchhhcccCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSND 543 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~-gr~~~G~~S~~L~~~~~g~~~~~ 543 (714)
.+.++|+|||+|+|.. +++.++|+|+.+.+.++. ++.+.|.||+||+++.+|+
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd---- 129 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS---- 129 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC----
Confidence 0136899999999853 357899999876554432 4456799999999987765
Q ss_pred CceeeEEEecCCc-cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--C---CCCCcEEEEEeeecCCcccchHHHH
Q 005109 544 CSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDEL 617 (714)
Q Consensus 544 ~~~v~i~v~~~~F-~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~---~~~~~~~Lf~G~R~~~~D~ly~dEL 617 (714)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...... + ...++++||||||+.+ |++|.+||
T Consensus 130 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 130 --EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp --EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred --EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 57888888875 46655678999999999999999999998754311 0 0136899999999987 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005109 618 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691 (714)
Q Consensus 618 ~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 691 (714)
+++.+.+. .+++++++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6789999999743 47899999998877777765 35789999999 8999999999999998764 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEecC
Q 005109 692 DSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 692 ~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+ +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 3 6789999999999999999
No 11
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=8.9e-36 Score=318.22 Aligned_cols=273 Identities=24% Similarity=0.445 Sum_probs=224.4
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+...|+.++|+.+++++..+....++||+|+.. ..+.|+||.|+.|.++..
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~-------------------------- 79 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADGE-------------------------- 79 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSB--------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCCc--------------------------
Confidence 46677899999999999987666778999999964 468899999998865420
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+. .|
T Consensus 80 ---------------------------~~-------------------------------~g------------------ 83 (310)
T 3vo2_A 80 ---------------------------DK-------------------------------NG------------------ 83 (310)
T ss_dssp ---------------------------CT-------------------------------TS------------------
T ss_pred ---------------------------CC-------------------------------CC------------------
Confidence 00 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
-++++|+|||+|+|.. +++.++|+|+.+.+.+..++.+.|.||+||+++.+|+
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 139 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 139 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC-----
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC-----
Confidence 1235799999999963 3578999998776666777778899999999987765
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++....... ...++++||||||+.+ |++|.+||+++.+
T Consensus 140 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 217 (310)
T 3vo2_A 140 -DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKE 217 (310)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHH
Confidence 578888888755 56556789999999999999999999987543211 1136899999999997 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
.+. .+++++++||++. .++|||+++.+..+.+++++ .+++.||+||| ++|+++|+++|.+++.+.+ + ++
T Consensus 218 ~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~ 292 (310)
T 3vo2_A 218 MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DW 292 (310)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CH
T ss_pred hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CH
Confidence 864 6789999999753 57899999999888888876 46899999999 8999999999999998875 3 58
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++|+++|+++|||++|||
T Consensus 293 ~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 293 MQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHCCceEEecC
Confidence 899999999999999999
No 12
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=1.9e-35 Score=326.60 Aligned_cols=274 Identities=25% Similarity=0.431 Sum_probs=223.1
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.+....|+.++|+.+++++...++++++||+|++++..+.|+||++|.|++++.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3556778999999999999877888999999998765689999999999876411 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
.|
T Consensus 172 ------------------------------------------------------------~g------------------ 173 (402)
T 2b5o_A 172 ------------------------------------------------------------NG------------------ 173 (402)
T ss_dssp ------------------------------------------------------------TT------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCC-CCccccCccchhhcccCCC-CCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSN 542 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~-~gr~~~G~~S~~L~~~~~g-~~~~ 542 (714)
.+..+|+|||+|+|.. +++.++|+|+.+.+.++ .++.+.|.||+||+++.+| +
T Consensus 174 -------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d--- 231 (402)
T 2b5o_A 174 -------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD--- 231 (402)
T ss_dssp -------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC---
T ss_pred -------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc---
Confidence 0136899999999863 25789999987544432 3445689999999998776 5
Q ss_pred CCceeeEEEecCCc-cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHH
Q 005109 543 DCSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF 620 (714)
Q Consensus 543 ~~~~v~i~v~~~~F-~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 620 (714)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...+... ...++++||||||+.+ |++|.+||+++
T Consensus 232 ---~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l 307 (402)
T 2b5o_A 232 ---DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKM 307 (402)
T ss_dssp ---CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHH
T ss_pred ---eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHH
Confidence 47788888876 566666789999999999999999999987643211 1136899999999997 99999999999
Q ss_pred HHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005109 621 VQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 694 (714)
Q Consensus 621 ~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 694 (714)
.+.+. .+++++++||++. .++|||++|.+..+.+++++ ..+++||+||| ++|+++|.+.|.+++.+.+.
T Consensus 308 ~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~---- 382 (402)
T 2b5o_A 308 AAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL---- 382 (402)
T ss_dssp HHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----
T ss_pred HHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----
Confidence 98765 6789999999743 57899999998877888766 35789999999 89999999999999988764
Q ss_pred HHHHHHHHHHHCCCeEEecC
Q 005109 695 KAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 695 ~a~~~~~~l~~~gRy~~DvW 714 (714)
.+++++++|+++|||++|||
T Consensus 383 ~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 383 NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp CHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHCCCEEEecC
Confidence 57889999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=4.9e-34 Score=305.07 Aligned_cols=277 Identities=22% Similarity=0.343 Sum_probs=213.3
Q ss_pred ccCCCCeeeEEeeeecccCCCCCCc---------eeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcE
Q 005109 309 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 379 (714)
Q Consensus 309 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~ 379 (714)
+....|+.++|+.+++|+...++++ +++|+|+.++..+.|+||+++.|+++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997666666 9999999876668999999999998764210
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHh
Q 005109 380 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 459 (714)
Q Consensus 380 ~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~ 459 (714)
+. | . .+
T Consensus 81 ---------g~------------~-----------------~---------------------~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A-----------------K---------------------GL--------------- 86 (314)
T ss_dssp ---------HH------------H-----------------T---------------------TC---------------
T ss_pred ---------cC------------c-----------------c---------------------ch---------------
Confidence 00 0 0 00
Q ss_pred cCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCcc-ccCccchhhccc
Q 005109 460 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNS 535 (714)
Q Consensus 460 ~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~-~~G~~S~~L~~~ 535 (714)
.+| | +.+|+|||+|+|.. +++.++|+|+.+.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~---------------~-~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV---------------G-YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC---------------B-CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc---------------C-CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 1 57899999999852 357899999876444444443 579999999997
Q ss_pred CCCCCCCCCceeeEEEecCCcc-CCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccch
Q 005109 536 LPMEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613 (714)
Q Consensus 536 ~~g~~~~~~~~v~i~v~~~~F~-lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 613 (714)
.+|+ .+.|.+|.|.|. +|. +..+|+||||+|||||||++|++++..... ....++++||||||+.+ |++|
T Consensus 142 ~~Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPGD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTTC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCS
T ss_pred CCcC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhH
Confidence 7765 578888888765 454 457899999999999999999999875431 11236899999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhhchHHHHhcc-cCCcEEEEe-cCchhhHHHHHHHHHHHHH
Q 005109 614 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQ 686 (714)
Q Consensus 614 ~dEL~~~~~~g~~~~l~~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvC-Gpa~~M~~~V~~~L~~i~~ 686 (714)
.+||+++.+++..+++++++||++. .++|||+++.+..+.+++.+ ..++. |+| || ++|+++|++.|.++..
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp-~~m~~~v~~~L~~~g~ 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRF-YICGGP-KGMEKGVIEEIQKISG 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESS-TTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCc-HHHHHHHHHHHHHHHh
Confidence 9999999876557789999999742 46899999988776676655 33444 999 99 8999999999999865
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 687 EQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 687 ~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++ .++.|+++|+++|||++|||
T Consensus 292 --~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 --NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp --CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred --ccc---hHHHHHHHHHHCCCEEEecC
Confidence 233 46789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=5e-34 Score=304.62 Aligned_cols=227 Identities=28% Similarity=0.434 Sum_probs=182.2
Q ss_pred CChHHHHHHhcCC---------CcccccccCCCCCC---CCCeEEEEEEEEEecCC-C---CccccCccchhhcccCCCC
Q 005109 476 PPLGVFFAAIVPR---------LQPRYYSISSSPRV---APSRIHVTCALVYEKTP-T---GRVHKGLCSTWMKNSLPME 539 (714)
Q Consensus 476 ~p~~~~l~~i~p~---------l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~-~---gr~~~G~~S~~L~~~~~g~ 539 (714)
..+|||+.+.+|. +.+|+|||+|+|.. +++.++|+|+.+.+..+ . ++.+.|.+|+||+++.+|+
T Consensus 61 ~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd 140 (311)
T 3lo8_A 61 YWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD 140 (311)
T ss_dssp CCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTC
T ss_pred ccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcC
Confidence 4568887665554 26899999999964 25789999986532222 1 2236799999999987765
Q ss_pred CCCCCceeeEEEecCCccCCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCC-CCcEEEEEeeecCCcccchHHH
Q 005109 540 KSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYEDE 616 (714)
Q Consensus 540 ~~~~~~~v~i~v~~~~F~lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~-~~~~~Lf~G~R~~~~D~ly~dE 616 (714)
.+.|.+|.|.|.+.+ +..+|+||||+|||||||++|++++......+.. .++++||||||+.+ |++|.+|
T Consensus 141 ------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~e 213 (311)
T 3lo8_A 141 ------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEE 213 (311)
T ss_dssp ------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHH
T ss_pred ------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHH
Confidence 578888988876543 3578999999999999999999998765321111 26799999999997 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005109 617 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691 (714)
Q Consensus 617 L~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 691 (714)
|+++.+.+. .+++++++||++. .++|||+.+.+....+++++..++.||+||| ++|+++|++.|.+++.+.+
T Consensus 214 l~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-- 290 (311)
T 3lo8_A 214 FTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG-- 290 (311)
T ss_dssp HHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc--
Confidence 999998765 6789999999754 4799999999887777776667899999999 8999999999999998875
Q ss_pred CHHHHHHHHHHHHHCCCeEEecC
Q 005109 692 DSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 692 ~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.+|++|+++|+++|||++|||
T Consensus 291 --~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 --ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
No 15
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=284.94 Aligned_cols=153 Identities=30% Similarity=0.461 Sum_probs=138.6
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++|+|+|||||||||.+|++|++.+. .+ ..++++++++++.+ ++..++.+||++||||+|+||+||+.
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34578999999999999999999999884 44 56889999999853 47789999999999999999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
|+++|... ...+++++||||||||++|++||.+++.++++|+++||++++|+|+||++.+.+++|+.|+++||++|++
T Consensus 109 F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~~ 186 (219)
T 3hr4_A 109 LKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACE 186 (219)
T ss_dssp HHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHHH
Confidence 99999832 2358999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhCC
Q 005109 262 LLRD 265 (714)
Q Consensus 262 ~~~~ 265 (714)
.++.
T Consensus 187 ~~~~ 190 (219)
T 3hr4_A 187 TFDV 190 (219)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 8864
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=9.1e-32 Score=287.97 Aligned_cols=291 Identities=23% Similarity=0.369 Sum_probs=207.0
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..++|+.++|+.+.+|+.++....++||+|+.. ..+.|.+|..++|.|+..+.. ...+ . + ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~-----~~~~----~----~-~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD-----NNPN----N----Q-INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc-----cccc----c----c-ccc
Confidence 46678999999999999998888899999999985 469999999999999875422 0000 0 0 000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+|+ ++-+++ ++ . +..++
T Consensus 74 ~~~----------------------~~~~~~------------~~---------~------------------h~~~~-- 90 (316)
T 3jqq_A 74 DHN----------------------IINTTN------------HT---------N------------------HNNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----------------------cccccc------------cc---------c------------------ccccc--
Confidence 000 000000 00 0 00000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecC---CCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT---PTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~---~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
...+-+...+|+|||||+|.. +.++|+|+.+.+.+ ..++.+.|.||+||.++.+|+
T Consensus 91 --------------~~~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 149 (316)
T 3jqq_A 91 --------------LSHIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND----- 149 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC-----
T ss_pred --------------cccCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC-----
Confidence 001225678999999999973 68999998653322 123567899999999888766
Q ss_pred ceeeEEEecCCccCCCC---CCCCeEEEecCCcchhHHHHHHHHHHhhhc------CCCCCcEEEEEeeecCCcccchHH
Q 005109 545 SWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYED 615 (714)
Q Consensus 545 ~~v~i~v~~~~F~lp~~---~~~piImIa~GTGIAPfrs~lq~~~~~~~~------~~~~~~~~Lf~G~R~~~~D~ly~d 615 (714)
.+.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||||+.+ |++|.+
T Consensus 150 -~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 150 -DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp -EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred -EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 5788889999999876 378999999999999999999998765321 11237899999999998 999999
Q ss_pred HHHHHHHcCC-CcEEEEEEecCCC---CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005109 616 ELNNFVQSGA-LSQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 690 (714)
Q Consensus 616 EL~~~~~~g~-~~~l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 690 (714)
||+++.+... .+++++++||++. .++|||+.+.+....+++++ ..++.||+||| ++|+++|.+.|.+. |.
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~----G~ 302 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH----DQ 302 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc----CC
Confidence 9999998754 6789999999753 68999999999887888776 46899999999 89999998877653 33
Q ss_pred CCHHHHHHHHHHHHHCCCeEEecC
Q 005109 691 LDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 691 ~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++. ...+|++.|+|
T Consensus 303 ~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 303 FDE----------KKKKRVHVEVY 316 (316)
T ss_dssp -CH----------HHHTTEEEEEC
T ss_pred Ccc----------cccccEEEEeC
Confidence 322 34578888875
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=1.6e-27 Score=236.48 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++++|+|+|+|||||++|+.|++.+.+.+ ..++++|++++. .++..++.+||++||| +|++|+++..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34678999999999999999999999998765 457888888752 2477899999999999 9999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
|+++|... ....|++++|+|||+||++| ++||.+++.++++|+++||+++.|.+++|++.+.+++|++|.+.||+.|.
T Consensus 89 fl~~L~~~-~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 89 FVDWLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp HHHHHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 99999722 12358999999999999999 69999999999999999999999999999866777789999999999996
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.93 E-value=4.8e-26 Score=221.19 Aligned_cols=151 Identities=30% Similarity=0.418 Sum_probs=129.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..|++++|+|+|+||||+++|+.|++.+...+ ..++++++++++. .++.+++.+||++||||.|++|+++..
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHH
Confidence 34678999999999999999999999998765 4578889888764 347789999999999999999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
|+++|... ....+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+.+| .+.++++++|.+++++.|..
T Consensus 79 f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 79 LHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp HHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHHh
Confidence 99999621 1245899999999999999999999999999999999999999998887 45689999999999999876
Q ss_pred hh
Q 005109 262 LL 263 (714)
Q Consensus 262 ~~ 263 (714)
.+
T Consensus 156 ~~ 157 (167)
T 1ykg_A 156 RA 157 (167)
T ss_dssp CC
T ss_pred hc
Confidence 54
No 19
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.92 E-value=5.9e-25 Score=226.88 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=146.8
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.|..|.
T Consensus 44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~---------~~~G~~s~~l~~~l~~Gd------~v~v~gP~ 107 (250)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRV---------LPEGRFSDYLRNDARVGQ------VLSVKGPL 107 (250)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECC---------CTTSSSHHHHHHHSSSSS------EEEEEEEE
T ss_pred cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEE---------CCCCCchHHHHhcCCCCC------EEEEEcCc
Confidence 4578988765565 57899999999863 4789988753 24599999996 777765 57888899
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++|++++...+. ..+++||||+|+.+ |++|.+||+++.+....+++++++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 9999887656899999999999999999999887532 26899999999998 999999999998766667899999
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
||++. .++||++.+.+. +.+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~ 232 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSR 232 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 98532 477898877643 2221 25789999999 89999999988653
No 20
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.92 E-value=3.6e-26 Score=217.11 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=124.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+++|++|++.+.+.+ ..+.++++.+ . .++.+++.+||++||||+|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 468999999999999999999999998765 4466666532 2 34678899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L 259 (714)
++|... ...+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhh--ccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 999722 125889999999999999999999999999999999999999999998754 56889999999998876
No 21
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.91 E-value=1e-24 Score=229.83 Aligned_cols=181 Identities=18% Similarity=0.343 Sum_probs=139.0
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEec--CC-C---CccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCC
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADA 562 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~--~~-~---gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~ 562 (714)
..+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||+++.+|+ .+.|.+|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-C
Confidence 46899999999863 47899888653110 00 0 1245799999999977765 578888999999864 4
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC----
Q 005109 563 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP---- 638 (714)
Q Consensus 563 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~---- 638 (714)
.+|+||||+|||||||++|+++++.... ..++++||||||+.+ |++|.+||+++.+.+..+++++++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 6899999999999999999998876432 236899999999997 99999999999887777899999998642
Q ss_pred --CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 639 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 639 --~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||++.+.+.. +.+.. ..++.||+||| ++|+++|++.|.+.
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887664321 11111 24678999999 89999999988754
No 22
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.91 E-value=1.1e-24 Score=223.80 Aligned_cols=185 Identities=17% Similarity=0.258 Sum_probs=143.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ....|+|||+|+|. +.+.++|+|+. ...|.+|+||+++.+|+ .+.|.+|
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~---------~~~G~~S~~l~~l~~Gd------~v~v~gP 105 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKV---------YEKGQMSQYIDHLNPGD------FLQVRGP 105 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEEC---------CTTCHHHHHHHTCCTTC------EEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEE---------cCCCCcchHhhcCCCCC------EEEEECC
Confidence 457888865444 23579999999986 35789988863 24699999999887765 5788889
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|+|.++.+..++++|||+|||||||+++++++..... ...+++||||+|+.+ |++|.+||+++.+....++++++
T Consensus 106 ~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (243)
T 2eix_A 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYV 181 (243)
T ss_dssp ECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEE
Confidence 99999987667899999999999999999999875321 236899999999997 99999999999887667789999
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. .++||++.+.+. +......+..+|+||| ++|+++|++.|.+.
T Consensus 182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 998532 357887643221 1111124678999999 89999999988754
No 23
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.91 E-value=1.3e-24 Score=221.48 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchh-hcccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~-L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|...+|+|||+|+|.. ++.++|+|+.+ ..|.+|+| +.++.+|+ .+.+..|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCc
Confidence 3467999877667778999999999863 46899888643 24666765 66676665 57888899
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+|+||||+|||||||+++++++...+. .++++|+||+|+.+ |++|.+||+++.++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 9999886667899999999999999999999987532 36899999999997 999999999998876677899999
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 681 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L 681 (714)
|+++. .++||++.+.+. +.+ ..+..+|+||| ++|+++|++.|
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~---~~~--~~~~~vyvCGp-~~m~~~v~~~l 213 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD---HGT--LAEHDIYIAGR-FEMAKIARDLF 213 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH---CSC--CTTCEEEEESC-HHHHHHHHHHH
T ss_pred cCCCCCcCCceeeHHHHHHHh---cCC--ccccEEEEECC-HHHHHHHHHHH
Confidence 98643 357887766543 111 25689999999 89999999887
No 24
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.91 E-value=1.9e-24 Score=222.60 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+. .+.|.+|+||+++.+|+ .+.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVT---------VPDGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEEC---------CTTCSSHHHHHTCCTTC------EEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEE---------eCCCchhhHHHhCCCcC------EEEEec
Confidence 44678988765552 46799999999863 678887753 24699999999887765 57787
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcE
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~ 628 (714)
.|.|.|.++.+. .++++|||+|||||||+++++++...+ ..++++|+||+|+.+ |++|.+||+++.++. ..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 788899987653 689999999999999999999875432 126899999999997 999999999998754 3568
Q ss_pred EEEEEecCCC---Ccccccchhhhch-HHHHhc-c-cCCcEEEEecCchhhHHHHHHHH-HHH
Q 005109 629 LIVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTI 684 (714)
Q Consensus 629 l~~a~Sr~~~---~k~yVq~~l~e~~-~~l~~~-i-~~~~~iyvCGpa~~M~~~V~~~L-~~i 684 (714)
+++++|+++. .+++|++.+.+.. ...... . ..+..+|+||| ++|+++|++.| .+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHc
Confidence 8999998754 3688888776542 222211 2 35789999999 89999999988 654
No 25
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.91 E-value=1.4e-24 Score=227.10 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=143.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ...+|+|||+|+|. +++.++|+|+.+...+..+....|.+|+||+++.+|+ .+.|.+|
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP 119 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGP 119 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcC
Confidence 357888865433 24689999999986 4578999887653333223335699999999887765 5778888
Q ss_pred cCCccC--------CCC--------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHH
Q 005109 553 QSNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 616 (714)
Q Consensus 553 ~~~F~l--------p~~--------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dE 616 (714)
.|.|.+ +.+ ..+|+||||+|||||||++|++++.... ...++++||||+|+.+ |++|.+|
T Consensus 120 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~e 195 (275)
T 1umk_A 120 SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPE 195 (275)
T ss_dssp ECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHH
T ss_pred ccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHH
Confidence 887743 321 3578999999999999999999987532 1237899999999987 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHH-HHHHHHHHH
Q 005109 617 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 684 (714)
Q Consensus 617 L~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~-~V~~~L~~i 684 (714)
|+++.+... .+++++++||++. .++||++.+.+. .......++.||+||| ++|++ +|++.|.+.
T Consensus 196 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 196 LEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp HHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred HHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 999987654 5688899998643 367787654322 1111124789999999 89999 898888754
No 26
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.90 E-value=6e-24 Score=218.05 Aligned_cols=182 Identities=16% Similarity=0.291 Sum_probs=141.3
Q ss_pred CCChHHHHHHhcCCC-----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~ 548 (714)
...+|||+.+.+|.. ++|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||+ ++.+|+ .+.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEE
Confidence 345789987655532 469999999985 36788877532 112236699999997 576765 578
Q ss_pred EEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 549 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 549 i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
|.+|.|.|.++ +..+|+||||+|||||||++|++++..... .+++|+||+|+.+ |++|.+||+++.+.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 88899999988 567899999999999999999999887542 2399999999997 999999999998877 668
Q ss_pred EEEEEecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++|++.. .+++++..+. .+-..+..||+||| ++|+++|++.|.+.
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLAL 223 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 9999998654 2456654433 12236789999999 89999999998765
No 27
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.90 E-value=6.8e-24 Score=228.75 Aligned_cols=181 Identities=23% Similarity=0.283 Sum_probs=146.2
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.+.+|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRN---------VPQGKMSEYLSVQAKAGD------KMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEEC---------CTTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEE---------cCCCCchhhHhhccCCCC------EEEEECC
Confidence 34578988766665 5789999999986 5789988863 24699999995 676665 5788889
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+ .+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++.+....++++++
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcCC----CCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 4899999999999999999999887532 36899999999997 99999999999887777789999
Q ss_pred EecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|+++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~ 323 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQ 323 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred EecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 998654 367888877632 111 24678999999 89999999988653
No 28
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.90 E-value=5.4e-24 Score=201.95 Aligned_cols=142 Identities=24% Similarity=0.294 Sum_probs=123.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhc-CCCeEEEEEeCCCC--CCCCchHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~vif~~sTyG~--G~~pdna~ 180 (714)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++.+ ++. +++.+||++||||+ |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998875 56889999988753 467 89999999999998 99999999
Q ss_pred HHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC-chhhHHHHHHHHHH
Q 005109 181 RFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 257 (714)
Q Consensus 181 ~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~-~e~~f~~W~~~l~~ 257 (714)
.|+++|. ...+++++++|||+||++|.+||.+++.++++|+++|++++.+....+...+ ..+.+.+|.++|+.
T Consensus 73 ~fl~~l~----~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFD----RIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGG----GTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHh
Confidence 9999996 3458999999999999999999999999999999999999988776654211 66788889888765
No 29
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.90 E-value=1.6e-23 Score=230.79 Aligned_cols=179 Identities=15% Similarity=0.235 Sum_probs=140.5
Q ss_pred CChHHHHHHhcCC-----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +.+|+ .+.+
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKR---------EEGGQVSNWLHNHANVGD------VVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEEC---------CTTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEE---------cCCCcchHHHHhcCCCCC------EEEE
Confidence 3568888655442 3589999999986 4678888763 235999999997 76665 5788
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+|+||||+|||||||++|++++...+. .++++|+||+|+.+ |++|.+||+++.+.+..+++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 89999999986667899999999999999999999887532 26899999999998 99999999999988777889
Q ss_pred EEEEecCCCC---------cccccchhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 630 IVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~---------k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++++|+++.. +++++..+ +.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 377 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVD 377 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 9999986531 23443321 1111 113789999999 8999999998865
No 30
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.90 E-value=1.3e-24 Score=226.97 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=149.9
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+| ....|+|||+|+|. .+.++++++. ...|.+|+||+++.+|+ .+.+.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIK---------VQNGPLTSRLQHLKVGD------PVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEE---------ECCCchhhHHhcCCCCC------EEEEec
Confidence 3467898876555 23579999999985 3578877653 24699999999887765 57888
Q ss_pred EecCCccCCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC----
Q 005109 551 VRQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA---- 625 (714)
Q Consensus 551 v~~~~F~lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~---- 625 (714)
.|.|.|.++. +..++++|||+|||||||+++++++...+.. ++++|+||+|+.+ |++|.+||+++.++..
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 8889998875 3568999999999999999999998765432 6899999999997 9999999999876654
Q ss_pred ----CcEEEEEEecCCC-CcccccchhhhchHHHHh-----cccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005109 626 ----LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 695 (714)
Q Consensus 626 ----~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~-----~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 695 (714)
.+++++++|++.. .++++++.+.+.. .+.. ...++..+|+||| ++|+++|++.|.+.......
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~----- 256 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGK----- 256 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCB-----
T ss_pred cccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhh-----
Confidence 3578888888753 5688887765431 1111 1235789999999 89999999998765433322
Q ss_pred HHHHHHHHHHCCCeEEecC
Q 005109 696 AESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 696 a~~~~~~l~~~gRy~~DvW 714 (714)
+...|+|..|.|
T Consensus 257 -------i~~~~~~~~E~y 268 (271)
T 4fk8_A 257 -------NSAPGHYVIERA 268 (271)
T ss_dssp -------TTBCBSEEEEES
T ss_pred -------cCCCCcEEEEEe
Confidence 233677777754
No 31
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.89 E-value=1.1e-23 Score=220.18 Aligned_cols=185 Identities=17% Similarity=0.231 Sum_probs=142.6
Q ss_pred CChHHHHHHhcC----CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 476 PPLGVFFAAIVP----RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 476 ~p~~~~l~~i~p----~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
..+|||+.+.+| ...+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++.+|+ .+.+.
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 106 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIK---------VPDGPLTSRLQHIKVGE------QIILRP 106 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEE---------ccCCCchhHHHhCCCCC------EEEEee
Confidence 457899876555 23579999999986 2788887753 24699999999887765 57787
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHH-HHHH-----c
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 623 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~ 623 (714)
.+.|.|.++... ..+++|||+|||||||++|++++...+ ...+++||||+|+.+ |++|.+||+ ++++ +
T Consensus 107 gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 181 (272)
T 2bgi_A 107 KPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGE 181 (272)
T ss_dssp EEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTT
T ss_pred CCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhc
Confidence 688999887543 689999999999999999999875432 126899999999997 999999999 9887 3
Q ss_pred --CCCcEEEEEEecCCC-Ccccccchhhhch-HHHHhc--c-cCCcEEEEecCchhhHHHHHHHHHH
Q 005109 624 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 624 --g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~-~~l~~~--i-~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
...+++++++||+.. .++||++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+
T Consensus 182 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 247 (272)
T 2bgi_A 182 LVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLES 247 (272)
T ss_dssp TSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHH
Confidence 245688899998743 4788988776532 111111 1 25789999999 8999999988864
No 32
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.89 E-value=4.4e-23 Score=227.50 Aligned_cols=182 Identities=14% Similarity=0.274 Sum_probs=142.1
Q ss_pred ChHHHHHHhc--C--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005109 477 PLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 548 (714)
Q Consensus 477 p~~~~l~~i~--p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~ 548 (714)
.+|||+.+.+ | . .++|+|||+|+|. ++.++|+|+... ..+..+.|.+|+||+ ++.+|+ .+.
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~v~ 253 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------EIK 253 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------EEE
Confidence 4688876543 3 2 3579999999986 467888775321 111235799999997 676665 578
Q ss_pred EEEecCCccCCCC----CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC
Q 005109 549 IFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 624 (714)
Q Consensus 549 i~v~~~~F~lp~~----~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g 624 (714)
+..|.|.|.++.+ ..+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++.+..
T Consensus 254 v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~ 328 (399)
T 4g1v_A 254 LSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAEC 328 (399)
T ss_dssp EEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTTC
T ss_pred EEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 8899999999876 57899999999999999999999987542 26899999999987 999999999999888
Q ss_pred CCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 625 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 625 ~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+++++++|+++ ++++.. .+.+.+..++.||+||| ++|+++|++.|.+.
T Consensus 329 ~~~~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 329 ANVDKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp SSEEEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7789999999864 455432 22233444899999999 89999999988654
No 33
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.89 E-value=1.3e-23 Score=219.01 Aligned_cols=194 Identities=14% Similarity=0.234 Sum_probs=140.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCcc-ccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~-~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ...+|+|||+|+|. .++.++|+|+++. .+..++. ..|.+|+||.++.+|+ .+.|.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~-~~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYF-KNEHPKFPNGGLMTQYLDSLPVGS------YIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCC-SSCBTTBTTCCHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCcc-CCCEEEEEEEEec-cCcccccCCCCchhhHHhcCCCCC------EEEEE
Confidence 3467888854333 24679999999986 3578999887542 1111121 3599999999887765 57788
Q ss_pred EecCC--------ccCCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHH
Q 005109 551 VRQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620 (714)
Q Consensus 551 v~~~~--------F~lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 620 (714)
+|.|. |.++. +..+|+||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 88775 66664 246899999999999999999999876421 1237899999999998 99999999999
Q ss_pred HHcCC-CcEEEEEEecC---CC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHH
Q 005109 621 VQSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 683 (714)
Q Consensus 621 ~~~g~-~~~l~~a~Sr~---~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~ 683 (714)
+++.. .+++++++|++ +. .++||++.+.+. .......+..+|+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87654 46788888873 21 367888764332 1111124578999999 899997 5777753
No 34
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.89 E-value=1e-23 Score=218.41 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=141.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+| ...+|+|||+|+|.. +.++|+++. .+.|.+|+||.++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIK---------VPDGPLTSRLQHLKEGD------ELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEE---------eCCCcchhHHHhCCCCC------EEEEec
Confidence 3467898865554 236799999999862 688887753 24699999999887765 46676
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHH-HHHH-----c
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 623 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~ 623 (714)
.+.|.|.++... .+++||||+|||||||+++++++...+.. .+++|+||+|+.+ |++|.+||+ ++.+ +
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC----CeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 577889887543 68999999999999999999988765422 6899999999997 999999999 8765 1
Q ss_pred --CCCcEEEEEEecCCC-Ccccccchhhhch-HHHHhc--c-cCCcEEEEecCchhhHHHHHHHHHH
Q 005109 624 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 624 --g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~-~~l~~~--i-~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
...+++++++|++.. .+++|++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 233 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDS 233 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHH
Confidence 134578889998743 4788988776532 111111 1 25789999999 8999999998864
No 35
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.89 E-value=4e-23 Score=228.08 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=140.6
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +.++.+.|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEE
Confidence 356888865444 2 3579999999986 47899887643 1112346999999995 77765 5778
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+|+||||+|||||||++|++++.. . ..++++||||+|+.+ |++|++||+++++....+++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 88889999976667899999999999999999999865 2 127899999999998 99999999999987777789
Q ss_pred EEEEecCCCCc----ccccc-hhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGPTK----EYVQH-KMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~~k----~yVq~-~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++|+++... .|.++ ++... .+.+. ...++.+|+||| ++|+++|++.|.+.
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 384 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILLPDADYYICGP-IPFMRMQHDALKNL 384 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEECCCCcccccccccCcCCCcCHH--HHhhccCCCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 99999865422 13222 22211 12221 113789999999 89999999988653
No 36
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.88 E-value=2.8e-23 Score=216.06 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=133.9
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+|. ..+|+|||+|+|. ..+.++|+|+. ...|.+|+||+++.+|+ .+.+..|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~---------~~~G~~S~~l~~l~~Gd------~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRI---------GDETTGTYKLSKLESGA------KVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEEC---------CCTTSHHHHHHTCCTTC------EEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecC-CCCEEEEEEEE---------ecCCchHHHHhcCCCCC------EEEEEcc
Confidence 3578888765564 6789999999986 35789988763 23588999999887765 5788888
Q ss_pred cCC-ccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 553 QSN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 553 ~~~-F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|+ |.++.+ ..+|++|||+|||||||++|++++...+ .+++||||+|+++ |++|.+||+++... +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 887 998865 4689999999999999999999987642 6799999999998 99999999886532 444
Q ss_pred EEEecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 631 VAFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 631 ~a~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++ ++++. .++||++.+.+. +.++..+|+||| ++|+++|++ |.+
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred EE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 43 45432 467888755442 334689999999 899999988 753
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.86 E-value=8e-22 Score=186.65 Aligned_cols=141 Identities=24% Similarity=0.274 Sum_probs=122.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcC-CCeEEEEEeCCCCCC--CCchHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~vif~~sTyG~G~--~pdna~~ 181 (714)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++++++++. .++.+ ++.+||++||||.|. +|++++.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEA------GGLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCS------TTTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCH------HHhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 47999999999999999999999998775 5678889988764 34777 999999999999999 9999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC-chhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~-~e~~f~~W~~~l~~ 257 (714)
|++++. ...+++++++|||+||++|.+||.+.+.+++.|..+|++.+.+....|...+ ..+.+.+|.+++++
T Consensus 73 fl~~l~----~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLE----ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGG----GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHH----hcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 999996 3358899999999999999889999999999999999999987666654322 56789999988764
No 38
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.86 E-value=5.2e-22 Score=212.69 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=133.7
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCc-cchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~-~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|...+|+|||+|+|. ..+.++|+|+. ...|. +|+||+ ++.+|+ .+.|..|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~-~~~~l~i~Vk~---------~~~G~g~S~~L~~~l~~Gd------~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQ-ERNRYVIAVKR---------DSNGRGGSISFIDDTSEGD------AVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTT-CCSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC------EEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCC-CCCeEEEEEEE---------ecCCcchhHHHHhcCCCCC------EEEEeCC
Confidence 346799987666666899999999986 34788888763 34587 899999 677765 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+ .+++||||+|||||||++|++++...+ . .+++|+||+|+.+ |++|.+||+++. ... ++.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEE
Confidence 899999865 678999999999999999999987643 1 5799999999997 999999999875 232 34555
Q ss_pred EecCCC-CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~-~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 666432 23344433322 235789999999 8999999998876
No 39
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.85 E-value=1.2e-21 Score=192.65 Aligned_cols=146 Identities=22% Similarity=0.387 Sum_probs=122.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-------
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p------- 176 (714)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++.+||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 56899999999999999999999988642 3456777777653 4577899999999999999999
Q ss_pred -chHHHHHHHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005109 177 -DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 235 (714)
Q Consensus 177 -dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~------------------ 235 (714)
++++.|+++|. ...+++++++|||+||+. | ++||.+.+.+++.|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~----~~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~ 147 (182)
T 2wc1_A 72 SESWEEFLPRIA----DQDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEF 147 (182)
T ss_dssp SCCHHHHGGGGT----TCCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEE
T ss_pred hhHHHHHHHHhh----hccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCce
Confidence 99999999986 456899999999999998 8 5899999999999999999988763
Q ss_pred -ccccC-C-C--CchhhHHHHHHHHHHHHHhh
Q 005109 236 -GLGDD-D-Q--CIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 236 -g~gD~-~-~--~~e~~f~~W~~~l~~~L~~~ 262 (714)
|++.+ + + ..+++++.|.++|+++|...
T Consensus 148 ~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 148 LGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 55423 2 2 25888999999999988654
No 40
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.84 E-value=2.7e-21 Score=189.67 Aligned_cols=143 Identities=23% Similarity=0.403 Sum_probs=119.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC--------
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-------- 176 (714)
++++|+|+|+||||+.+|+.|++.+.. + ..++++++++.+. .++.+++.+||++||||+|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 478999999999999999999998854 2 3456778877653 4577899999999999999999
Q ss_pred chHHHHHHHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-------------------
Q 005109 177 DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------- 235 (714)
Q Consensus 177 dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~------------------- 235 (714)
+++..|+++|. ...++++++++||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~----~~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~ 147 (179)
T 1yob_A 72 ESWEEFLPKIE----GLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFV 147 (179)
T ss_dssp CCHHHHHHHHT----TCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBS
T ss_pred hHHHHHHHHhh----hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCcee
Confidence 99999999996 456899999999999998 9 4799999999999999999988653
Q ss_pred cc-ccCC-C--CchhhHHHHHHHHHHHHH
Q 005109 236 GL-GDDD-Q--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 236 g~-gD~~-~--~~e~~f~~W~~~l~~~L~ 260 (714)
|+ .|.+ + ..+++++.|.++++++|.
T Consensus 148 gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 148 GLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 43 2322 2 368899999999987664
No 41
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.84 E-value=1.3e-20 Score=183.82 Aligned_cols=140 Identities=26% Similarity=0.418 Sum_probs=117.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCC----CchHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~----pdna~ 180 (714)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 589999999999999999999999753 3567778776 43 357789999999999999999 99999
Q ss_pred HHH-HHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-------------------cc-
Q 005109 181 RFY-KWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL- 237 (714)
Q Consensus 181 ~F~-~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~- 237 (714)
.|+ ++|. ...+++++++|||+||+. | ++||.+++.+++.|.++|++.+.+. |+
T Consensus 71 ~fl~~~l~----~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~ 146 (173)
T 2fcr_A 71 EFLYDKLP----EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLP 146 (173)
T ss_dssp HHHHHTGG----GCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEE
T ss_pred HHHHhhcc----ccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeee
Confidence 999 8885 456889999999999999 8 6999999999999999999988652 22
Q ss_pred -ccC--CCCchhhHHHHHHHHHHHH
Q 005109 238 -GDD--DQCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 238 -gD~--~~~~e~~f~~W~~~l~~~L 259 (714)
+.+ +...++.++.|.+++++.|
T Consensus 147 ~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 147 LDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246788999999998776
No 42
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.83 E-value=9.3e-21 Score=185.19 Aligned_cols=143 Identities=25% Similarity=0.380 Sum_probs=119.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+++|+|+|+||||+++|+.|++.+... .++++++.+... .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999653 367888877653 457789999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cc-C
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD-D 240 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~--------------------g~-gD-~ 240 (714)
+|. ...+++++++|||+||+. | ++||.+.+.+++.|.+.|++.+... |+ .| +
T Consensus 71 ~l~----~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~ 146 (175)
T 1ag9_A 71 TLE----EIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDED 146 (175)
T ss_dssp HHT----TCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTT
T ss_pred hhh----hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCC
Confidence 996 446899999999999986 8 7999999999999999999987641 11 12 1
Q ss_pred CC--CchhhHHHHHHHHHHHHHh
Q 005109 241 DQ--CIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 241 ~~--~~e~~f~~W~~~l~~~L~~ 261 (714)
++ ..+++++.|.++|++.|..
T Consensus 147 ~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 147 RQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CcccccHHHHHHHHHHHHHHhhh
Confidence 22 2567899999999998864
No 43
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.82 E-value=5e-21 Score=184.92 Aligned_cols=137 Identities=26% Similarity=0.366 Sum_probs=112.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+++|+.|++.+ + . ++++++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999998 3 3 68888887764 45778999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------ccccC-C
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD-D 241 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~gD~-~ 241 (714)
++|. ...|++++|+|||+||+. |. +||.+++.++++|.+ ++++.+. ++..+ +
T Consensus 69 ~~l~----~~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 142 (164)
T 2bmv_A 69 GTLE----ASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDED 142 (164)
T ss_dssp TTCC----THHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTT
T ss_pred HHHh----hhhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCC
Confidence 9985 345889999999999996 97 599999999999987 7776653 33222 1
Q ss_pred ---CCchhhHHHHHHHHHHH
Q 005109 242 ---QCIEDDFSAWRELVWPE 258 (714)
Q Consensus 242 ---~~~e~~f~~W~~~l~~~ 258 (714)
...++.+++|.+++++.
T Consensus 143 ~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 143 NQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTTT
T ss_pred CccccCHHHHHHHHHHHHHh
Confidence 12477899999988654
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.82 E-value=5.1e-20 Score=178.43 Aligned_cols=142 Identities=22% Similarity=0.379 Sum_probs=119.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|+||||+++|+.|++.+... .++++++++++. .++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 368889988764 357889999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------c--cccC-
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------G--LGDD- 240 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g--~gD~- 240 (714)
+|. ...++++++++||+|++. |. +||.+.+.+++.|.++|++.+.+. + .+.+
T Consensus 72 ~l~----~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~ 147 (169)
T 1obo_A 72 ELD----DVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDN 147 (169)
T ss_dssp TGG----GCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred Hhh----hcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCC
Confidence 986 346899999999999984 96 899999999999999999987641 2 2222
Q ss_pred -CCCchhhHHHHHHHHHHHHH
Q 005109 241 -DQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 241 -~~~~e~~f~~W~~~l~~~L~ 260 (714)
+...+++++.|.+++++.|.
T Consensus 148 ~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 148 QSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHHHHhc
Confidence 22467789999999988773
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.81 E-value=6.7e-20 Score=177.62 Aligned_cols=142 Identities=23% Similarity=0.395 Sum_probs=119.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|+||||+.+|+.|++.+... ..++++|+.+++. .++.+++.+||++|||+.|++|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 4799999999999999999999999653 2478889888764 357889999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-ccCC-
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDDD- 241 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~-gD~~- 241 (714)
+|. ...++++++++||+||+. |. +||.+.+.+++.|.++|++.+... |+ .|.+
T Consensus 72 ~l~----~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~ 147 (169)
T 1czn_A 72 DLD----SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN 147 (169)
T ss_dssp GGG----GSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred Hhh----hhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCC
Confidence 996 346899999999999996 96 899999999999999999987531 22 1222
Q ss_pred --CCchhhHHHHHHHHHHHH
Q 005109 242 --QCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 --~~~e~~f~~W~~~l~~~L 259 (714)
...++++..|.+++++.|
T Consensus 148 ~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 148 QPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHHHHh
Confidence 246788999999998766
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.75 E-value=9.2e-18 Score=156.97 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=100.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCc-hHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pd-na~~F~~~ 185 (714)
|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998876 5678999988774 45789999999999999999997 99999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
|. .. ++++++++||+++..| |.+.+.+++.|+++|++.+.+....+
T Consensus 73 l~----~~-l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~ 118 (138)
T 5nul_A 73 IS----TK-ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQ 118 (138)
T ss_dssp HG----GG-CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEE
T ss_pred HH----hh-cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEe
Confidence 96 22 8999999999876543 78899999999999999987654443
No 47
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.69 E-value=1.7e-17 Score=171.49 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.+. ++++|.+.++ ...|.+|+||+++.+|+ .+.|..
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEec
Confidence 3579998776663 4579999999764 5666665421 11388999999888876 578889
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+ ..+++|||+|||||||++|+++... . .++++|+++|+.+ |.++ |+ ....+++++
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~---~----~~~~~~~~~~~~~-d~~~---l~----~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN---N----AVGYAVIEVLSEA-DIQP---LV----HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT---T----CEEEEEEEESSGG-GCCC---CC----CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC---C----CcEEEEEEECCHH-Hhhc---cc----CCCCcEEEE
Confidence 9999998754 4789999999999999999998732 1 4678999999976 6542 21 122345666
Q ss_pred EEecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHH
Q 005109 632 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 682 (714)
Q Consensus 632 a~Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~ 682 (714)
+++.+... ...+.+.+.+. .+...+.++|+||| ++|+++|++.|.
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred EeCCCCCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 66543221 11222222210 01124578999999 899999999887
No 48
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.68 E-value=6.3e-17 Score=155.90 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+.+.++ ...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 467899998876533 3455678999999999996 88774 88999
Q ss_pred HHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
.|. ...++++++++||. |.|+|.+.+.+++.|+++|++.+.+........ ...+...+|.+.+...|.
T Consensus 74 ~l~----~~~l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~ 143 (161)
T 3hly_A 74 TIF----AAAHNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLT 143 (161)
T ss_dssp HHH----HHCCTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----hhhhCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 886 22478999999994 666789999999999999999887644333222 233456677777766554
No 49
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.67 E-value=3.5e-17 Score=149.57 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
++|+|+|+|||||++|++|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 2 2 2321 123 488999999999999999999999865
Q ss_pred HhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHH
Q 005109 187 TEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 256 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~ 256 (714)
+++++|+|||+||++|++ ||.+++.++++|. ....... .+..+....+.+.+|.++++
T Consensus 59 --------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 --------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPIVSKF-ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp --------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEEE-ETTCCHHHHHHHHHHHHHHT
T ss_pred --------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---CccEEEE-ecCCCHHHHHHHHHHHHHhc
Confidence 457899999999999977 9999999999874 3322222 22222223455788987765
No 50
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.67 E-value=7.9e-17 Score=154.96 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=112.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.++|+|+|+|+||||+++|+.|++.+.+.| ..++++|+.+. +.++ ...++.+++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQE--LRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHHH--HHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHHH--HHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998865 56889999877 5432 3456778999999999996 8876 4889
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
++.|. ...++++++++|| +|.|+|.+.+.+.++|+++|++.+.+........ ...+...+|.+.|...+.
T Consensus 77 l~~l~----~~~~~~k~va~fg----s~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~ 148 (159)
T 3fni_A 77 LSTIL----GSVNEKQAVGIFE----TGGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVT 148 (159)
T ss_dssp HHHHH----HHCCTTSEEEEEC----CSSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hhcccCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 98886 2347899999999 4677888999999999999999887655443322 233456677777776665
Q ss_pred h
Q 005109 261 N 261 (714)
Q Consensus 261 ~ 261 (714)
+
T Consensus 149 ~ 149 (159)
T 3fni_A 149 R 149 (159)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=155.11 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=90.3
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc---CCCCCcEEEEEeeecCCcccc-hHHHHHHHHHc--
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS-- 623 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~---~~~~~~~~Lf~G~R~~~~D~l-y~dEL~~~~~~-- 623 (714)
.+|.|.|.++....+|+||||+|||||||+++++++...... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 4 ~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~ 82 (186)
T 3a1f_A 4 DGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQ 82 (186)
T ss_dssp TSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHh
Confidence 346677776444467899999999999999999999875421 11247899999999998 887 99999999875
Q ss_pred ----CCCcEEEEEEecCCC---Ccccccc-----hh----------hhchHH----HHhcc-cCCcEEEEecCchhhHHH
Q 005109 624 ----GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSD----IWNML-SEGAYLYVCGDAKSMARD 676 (714)
Q Consensus 624 ----g~~~~l~~a~Sr~~~---~k~yVq~-----~l----------~e~~~~----l~~~i-~~~~~iyvCGpa~~M~~~ 676 (714)
...+++++++|++.. .+.|++. .+ +-+.+. +.... ..+..||+||| ++|+++
T Consensus 83 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~ 161 (186)
T 3a1f_A 83 ERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAET 161 (186)
T ss_dssp HTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHH
T ss_pred hccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHH
Confidence 235678888988532 1122221 00 001111 11111 23678999999 899999
Q ss_pred HHHHHHHHH
Q 005109 677 VHRTLHTIV 685 (714)
Q Consensus 677 V~~~L~~i~ 685 (714)
|++.|.+..
T Consensus 162 v~~~l~~~g 170 (186)
T 3a1f_A 162 LSKQSISNS 170 (186)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999887653
No 52
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.63 E-value=1.5e-15 Score=141.14 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=105.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCc-hHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pd-na~~F~~~ 185 (714)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 5678899988764 45788999999999999999888 49999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
+. ..++++++++||. |.+ ||.+.+.+++.|..+|++.+ +....+...+..+.+.+|.+++
T Consensus 74 l~-----~~l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l 134 (137)
T 2fz5_A 74 LA-----PKLKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAA 134 (137)
T ss_dssp HG-----GGCSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHH
T ss_pred hh-----hhcCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHH
Confidence 95 2588999999995 433 78999999999999999987 4322222111156677777665
No 53
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.61 E-value=4e-16 Score=146.47 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
+++.|+|+|+||||+.+|++|+++ . .+++.+ .+..++.+++++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~-------~---~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQ-------Q---IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCS-------E---EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhccc-------c---ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 467899999999999999988642 0 123322 14455778999999999999999999885
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 257 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~ 257 (714)
.. .++.|+|||+||++| +.||.+++.+++.+ |...+... +.+-.....+.+.+|.+++|.
T Consensus 69 ~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~-el~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 KY---------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp HH---------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCHHHHHHHHHHHHHHHH
T ss_pred hC---------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceE-EEcCCHHHHHHHHHHHHHHHH
Confidence 32 247899999999999 78999999988776 44332211 111111234568899888875
No 54
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.60 E-value=1e-15 Score=144.32 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=83.6
Q ss_pred eEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCc
Q 005109 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 627 (714)
Q Consensus 548 ~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~ 627 (714)
.|.+|.|+|...++ .++++|||+||||||+++++++..+.+ .++.|+ |+|+++ |.+|.+||+++.++ .
T Consensus 4 ~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 46677787765543 689999999999999999999887543 478999 999998 99999999987542 1
Q ss_pred EEEEEEecCCC--------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~--------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEY 130 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHH
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 23333443211 245666544332 111 24568999999 99999999888764
No 55
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.60 E-value=6.3e-16 Score=148.45 Aligned_cols=120 Identities=11% Similarity=0.046 Sum_probs=82.6
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
+.|..|.|+|.... ..+|++|||+||||||+++++++....+ .+++|+ |+|+.+ |.+|.+||+++..+
T Consensus 8 l~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~--- 75 (158)
T 3lrx_A 8 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR--- 75 (158)
T ss_dssp ----CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---
T ss_pred eEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---
Confidence 36778888765433 4689999999999999999999987543 479999 999998 99999999998642
Q ss_pred cEEEEEEecCC------C--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 627 SQLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 627 ~~l~~a~Sr~~------~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+..++++.. . .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+.
T Consensus 76 ~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 76 HIVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEY 135 (158)
T ss_dssp EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGG
T ss_pred eEEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 12222233211 1 246666544332 111 14568999999 99999999887654
No 56
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.40 E-value=6e-13 Score=146.73 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=98.5
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE---EecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK---VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~---v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
..++|+|+|+|++||||++|+.|++.+.++| ..+. +.|++..+. .++..++.+++.+||++||| +|++++.+
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G--v~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~-~~~~~p~~ 338 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKG--FTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTY-EAEIHPLM 338 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTT--CEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCT-TSSSCHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcC--CceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCc-CCcCCHHH
Confidence 4568999999999999999999999999887 3333 445544443 34567788999999999999 57788899
Q ss_pred HHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 180 ARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 180 ~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
..|+..+. ...++++++++|| +|.|.+.+++.+.++|+++|++.+-+
T Consensus 339 ~~~l~~l~----~~~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 339 RFTLLEII----DKANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHH----HHCCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHH----hcccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 99999887 3457899999999 78999999999999999999986544
No 57
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.36 E-value=2.8e-12 Score=140.68 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=114.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.+ +...++.+++.+||++||||.|.+| .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998765 56788898876643 2345678999999999999777766 799999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccC--CCCchhhHHHHHHHHHHHHHh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~--~~~~e~~f~~W~~~l~~~L~~ 261 (714)
+++. ...++++++++|| +|.++|.+.+.+.+.|..+|++.+.+....+. +....+.+.+|.+++...+++
T Consensus 327 ~~l~----~~~l~~k~~~~f~----t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 327 QYIK----GLRPQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp HHHH----HTCCCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh----hcccCCCEEEEEE----cCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9986 3358899999999 46778999999999999999998864332222 222334566777777666654
Q ss_pred h
Q 005109 262 L 262 (714)
Q Consensus 262 ~ 262 (714)
.
T Consensus 399 ~ 399 (402)
T 1e5d_A 399 K 399 (402)
T ss_dssp H
T ss_pred h
Confidence 3
No 58
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.36 E-value=4.5e-12 Score=125.38 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccch-------------HHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~vif~~sTy 170 (714)
|++|+|+|+|.+|||+.+|+.+++.+.+.+ ..++++|+.++..... ...+++.+++.+||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 579999999999999999999999998765 5678888877421100 1135688999999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.|.+|..++.|++++........++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 789999999999998611001247899999999988776666778899999999999987643
No 59
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.36 E-value=1.6e-12 Score=142.37 Aligned_cols=119 Identities=17% Similarity=0.098 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++++|+|+|+||||+++|+.+++.+.+.+ ..++++|+.+.+.. ++..++.+++.+||++|||+.|.|| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 578999999999999999999999998765 56788888776542 2345677899999999999777776 599999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 235 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~ 235 (714)
++|. ...++++++++||. |.++|.+.+.+++.|..+|++.+.+.
T Consensus 326 ~~l~----~~~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~ 369 (398)
T 1ycg_A 326 DDLV----GLRPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEP 369 (398)
T ss_dssp HHHH----HHCCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSS
T ss_pred HHHh----ccccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCc
Confidence 9986 23478999999994 77889999999999999999988754
No 60
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.34 E-value=9.4e-12 Score=122.45 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=109.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
|++|+|+|+|+||||+.+|+.|++.+.+ .+ ..++++|+.+.+. .++.+++.+||++||| .|.+|..++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999987 55 5678899988763 4577899999999999 99999999999
Q ss_pred HHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccc------c-----c---cccCC-CCchh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP------V-----G---LGDDD-QCIED 246 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~------~-----g---~gD~~-~~~e~ 246 (714)
++++.... ...++++++++||. |+.. ..+..+.+.+.+.|..+|+..+.. . | .+.-+ ....+
T Consensus 75 ld~~~~~~-~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 152 (188)
T 2ark_A 75 FDDVLGDL-WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKE 152 (188)
T ss_dssp HHHTGGGT-TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHH
T ss_pred HHHHhhhh-HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHH
Confidence 99986200 13588999999998 5443 234556677888888888865421 0 1 11111 11234
Q ss_pred hHHHHHHHHHHHHHhhh
Q 005109 247 DFSAWRELVWPELDNLL 263 (714)
Q Consensus 247 ~f~~W~~~l~~~L~~~~ 263 (714)
....|-+.+...+.++.
T Consensus 153 ~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 153 ACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45577777777666553
No 61
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.32 E-value=3.9e-12 Score=119.57 Aligned_cols=98 Identities=17% Similarity=0.398 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCC----CCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG----~G~~pdna 179 (714)
++..+|+|.|.||||+.|+++|... ... +++.+ . +.+..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~--------~~~-I~~~~--~------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP--------AVR-IPLNE--R------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC--------CEE-CCSST--T------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc--------ccc-ccccc--C------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556799999999999999988421 112 23321 1 12345678999999999 59999999
Q ss_pred HHHHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHH
Q 005109 180 ARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 225 (714)
Q Consensus 180 ~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~ 225 (714)
.+|++.+. ..++.++|+|.||++| +.||.+++.+.+.+.
T Consensus 83 ~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 99987654 2357799999999998 999999999999884
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.25 E-value=3.5e-11 Score=132.65 Aligned_cols=146 Identities=15% Similarity=0.015 Sum_probs=109.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.. +..+++.+++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 3689999999999999999999999998765 56788888876642 2335788999999999999 66666679999
Q ss_pred HHHHHhccCCCcc-CCceEEEEeccCCchhHHHHHHHHHHHHHHH-cCCcccccc-cccc--CCCCchhhHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV-GLGD--DDQCIEDDFSAWRELVWP 257 (714)
Q Consensus 183 ~~~L~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~~~~~-g~gD--~~~~~e~~f~~W~~~l~~ 257 (714)
++++. ...+ +++++++||.|+.. +.+.+.+.+.|.. +|++.+.+. .... -+....+....|.+++..
T Consensus 330 ld~l~----~~~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 401 (414)
T 2q9u_A 330 LNYVR----GLTLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGK 401 (414)
T ss_dssp HHHHH----HHTTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hhcccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 99986 2346 89999999977543 5678899999999 999987643 2222 122223455666666655
Q ss_pred HHHh
Q 005109 258 ELDN 261 (714)
Q Consensus 258 ~L~~ 261 (714)
.+.+
T Consensus 402 ~~~~ 405 (414)
T 2q9u_A 402 RAIA 405 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 63
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.24 E-value=3.7e-11 Score=118.52 Aligned_cols=125 Identities=17% Similarity=0.099 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccc--------------hHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEE--------------DEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~--------------~~~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+|.+|||+.+|+.+++.+.+ .+ ..++++|+.+....+ .+ ..++.+++.+||++|
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeC
Confidence 5789999999999999999999999987 55 568888887642110 01 356889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
|| .|.+|..++.|++++........++++++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 78 ~y-~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 78 TR-FGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp EE-TTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hh-cCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 99 99999999999999851100124889999999987655 44556778888889888987654
No 64
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.21 E-value=5.1e-11 Score=114.58 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=90.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc--------------------h---HHHHhhcCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (714)
+++++|+|.|+||||+++|+.|++.+.... +.+.+...|..++ . ....++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 468999999999999999999999885421 2232222222100 0 012357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
+.+||++||| .|.+|..+..|++.+ .++++++++|+. |++.+ ..+.+.+.+.|. |++-+ +-...
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~~~- 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY-------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGKLL- 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCEEC-
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cceEE-
Confidence 9999999999 799998888887654 478999999986 44444 356677777764 55533 21111
Q ss_pred CCCCchhhHHHHHHHH
Q 005109 240 DDQCIEDDFSAWRELV 255 (714)
Q Consensus 240 ~~~~~e~~f~~W~~~l 255 (714)
.....++++.+|.+++
T Consensus 145 ~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 NGQITRDLVTEWFEKI 160 (162)
T ss_dssp CSCCCHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHh
Confidence 1124578999998764
No 65
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.20 E-value=8.9e-11 Score=116.09 Aligned_cols=125 Identities=12% Similarity=0.010 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-------------c--ccchHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-------------A--DEEDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-------------~--~~~~~~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. + ....+ .+++.+++.+||++|
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECC
Confidence 5799999999 9999999999999998765 56788888775 0 00001 456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| .|.+|..++.|++++........++++++++|+.+...+.....+.+.+.+.|..+|+..+.
T Consensus 80 ~y-~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 80 TR-YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp CB-TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred cc-ccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 99 79999999999999851100235889999999987665543466778899999999988654
No 66
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.20 E-value=4.2e-11 Score=131.35 Aligned_cols=146 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
+..++++|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+.+.+ ++..++.+++.+||++||| .|.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDRS--EIVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 35689999999999999999999999998755 56788999887642 2345788999999999999 5666668999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccC--CCCchhhHHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~--~~~~e~~f~~W~~~l~~~ 258 (714)
|++++....... ++++++++||.|+.. +.+.+.+.+.|..+|++.+.+. .... +....+...+|.+++...
T Consensus 329 ~ld~l~~~~~~~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFNR-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEE-EVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGGG-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEE-EEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccc-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEE-EEeeCCCHHHHHHHHHHHHHHHHH
Confidence 999997211112 689999999987554 6678899999999999987662 2221 212334455666655443
No 67
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.18 E-value=7.7e-11 Score=117.81 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc--------------------cccchHHHHhhcCCCe
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (714)
.|++|+|+|+|.+|||+.+|+.+++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998765 56788888775 210 122467888999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
+||++|+| .|.+|..++.|++++........++++++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 799999999999997511002348899999999877665445677888999999999886643
No 68
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.17 E-value=7.9e-11 Score=116.41 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
.+++|+|+|+|.||||+.+|+.|++.+.+.+ +++.++ +..+ ...+++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~-------~~v~~~~~~~~-~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEATL-------HAIDAEGNLSE-DGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEE-------EECCTTSCCCH-HHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhcc-------eEeeecCCCCH-hHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 4678999999999999999999999997532 344432 1111 1235788999999999999 6999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
|++++...-....++++++++|+.+...+..+..+...+...|..+|+..+
T Consensus 76 fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999985100023588999999999887776677888999999999988754
No 69
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.15 E-value=1.7e-10 Score=112.00 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=91.4
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccch-----------------------HHHHhhc
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKLK 158 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l~ 158 (714)
..+++++|+|.|.||||+.+|+.|++.+.... +.+.+...|..++- ....++.
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~----~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGGDL----YPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCCCe----EEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 45788999999999999999999999985321 23333333321000 0013577
Q ss_pred CCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005109 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 238 (714)
Q Consensus 159 ~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~g 238 (714)
+++.+||++||| .|.+|..+..|++.+ .++++++++|+.+... .+..+.+.+.+.|. |++- .+....
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~~-~~g~~~ 153 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH-------SLKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLNW-KEGRLL 153 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSEE-CCCEEC
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc-------CCCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCee-ccCeEe
Confidence 899999999999 588998888888776 3789999999974322 23556677777774 4543 232222
Q ss_pred cCCCCchhhHHHHHHHH
Q 005109 239 DDDQCIEDDFSAWRELV 255 (714)
Q Consensus 239 D~~~~~e~~f~~W~~~l 255 (714)
. ...++++..|.+++
T Consensus 154 ~--~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 154 N--RTDEKAIRAWLDVI 168 (171)
T ss_dssp S--SCCHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHh
Confidence 1 13578899998775
No 70
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.11 E-value=1.7e-10 Score=114.32 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=97.0
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHH-HHhhcCCCeeEEecCccccc-----------cchHHHHhhcCCCeEEEEEeC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~vif~~sT 169 (714)
|++|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+++.+.+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57899999997 79999999999999 88765 5678899887643 112234567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| .|..|..++.|++|+. ...++++++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~----~~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILP----QFALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSC----TTTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhcc----ccccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 7889999999999985 346899999999997654 33443334688899999998764
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.02 E-value=2.9e-09 Score=105.00 Aligned_cols=156 Identities=11% Similarity=0.053 Sum_probs=114.9
Q ss_pred CceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------------------------chHH
Q 005109 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (714)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (714)
|++|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. -.++
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 578999999998 9999999999999998764456888998765321 0123
Q ss_pred HHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhcc---------CCCccCCceEEEEeccCCchhH--HHHHHHHHHH
Q 005109 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKE---------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 222 (714)
Q Consensus 154 ~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~---------~~~~l~~~~~aVFGlGds~Y~~--f~~~~k~ld~ 222 (714)
.+++...+.+||++|+| .|.+|...+.|++++.... ....++++++++|+.+...|.+ |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 46788999999999999 8889999999999986110 0124789999999976666643 5667777888
Q ss_pred HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 223 ~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
.|..+|++.+........+. .++..++|.++....+.+
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 99999998764433322222 345557887776665544
No 72
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=98.89 E-value=3.6e-09 Score=100.32 Aligned_cols=127 Identities=9% Similarity=0.157 Sum_probs=84.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCc-cccccc--------------------hHHHHhhcCCCe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (714)
+++++|+|.|+||||+++|+.|++++...+ .+.+...+ .|+.+. .....++.+++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999884321 01211111 122100 001235778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ 242 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~ 242 (714)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+ ..+.+.+.+.+. +++-+ + |..
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~-~-g~~---- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI-G-VAR---- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE-E-EEE----
T ss_pred EEEEccee-cccccHHHHHHHHhch------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee-c-ccc----
Confidence 99999999 6999999999999873 36788999999887765 344566666663 44432 2 111
Q ss_pred CchhhHHHHH
Q 005109 243 CIEDDFSAWR 252 (714)
Q Consensus 243 ~~e~~f~~W~ 252 (714)
++.++.+|.
T Consensus 142 -~~~~~~~w~ 150 (151)
T 3edo_A 142 -DDSEVDKWS 150 (151)
T ss_dssp -TTTTHHHHH
T ss_pred -cHHHHHHHh
Confidence 124688885
No 73
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.81 E-value=3.2e-08 Score=101.07 Aligned_cols=152 Identities=11% Similarity=0.107 Sum_probs=109.5
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhh-cCCCeeEEecCccccc----------------------cchHHHHhhc
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (714)
|++|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.++.+ +-.++.+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 578999999996 99999999999999876 5 5678888876532 1123446788
Q ss_pred CCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005109 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 238 (714)
Q Consensus 159 ~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~g 238 (714)
..+.+||++|+| .|.+|..++.|++++........++++++++|+.+... .+..+.+.+...|..+|+..+.+....
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~ 155 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSIT 155 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEe
Confidence 999999999999 99999999999999851111235889999999765322 122456778888999999876554332
Q ss_pred cC-CCCchhhHHHHHHHHHHHHH
Q 005109 239 DD-DQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 239 D~-~~~~e~~f~~W~~~l~~~L~ 260 (714)
+. .....+.+..+.+.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 156 NSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHT
T ss_pred ccCChHHHHHHHHHHHHHHHHHh
Confidence 21 11244566667766665554
No 74
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.76 E-value=6.9e-08 Score=94.64 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=94.7
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhc----CCCeeEEecCccccc----------------------c-chHHHH
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYAD----------------------E-EDEYEE 155 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~----------------------~-~~~~~~ 155 (714)
|+|+|+|||.+ |+|+.+|+.+.+.+.+.+ +...++++|+.+++. + ..++.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 47999999998 999999999999998753 135678888865322 0 013456
Q ss_pred hhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 156 ~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
++...+.+||++|+| .|.+|..++.|++++. ..++++++++|+.|... . ..+...+...|..+|++.+.
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~-----~~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLY-----HEWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCS-----TTTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHH-----hhcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcc
Confidence 788999999999999 8899999999999984 24889999999988743 2 34667888899999998654
No 75
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.76 E-value=3.6e-08 Score=97.00 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=95.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc------------cchHHHHhhcCCCeEEEEEeC
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~vif~~sT 169 (714)
+++|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-.++.+++...+.+||++|+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 468999999985 999999999999887 33 5678888876432 112234678899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| .|..|...+.|++++..... ..++++++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 83 y-~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 83 Y-NYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp E-TTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred c-ccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9 88899999999999961101 3589999999998754443 235668888899889998765
No 76
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.75 E-value=2.3e-08 Score=96.75 Aligned_cols=115 Identities=10% Similarity=0.190 Sum_probs=87.1
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-------------cchHHHHhhcCCCeEEEEEeC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------~~~~~~~~l~~~~~vif~~sT 169 (714)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. +-.++.+++.+.+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 47999999999 9999999999998754 3445544322 112234578899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| +|.+|..++.|++|+. ...++++++++|+. |... .+..+...+...|..+|+..+-
T Consensus 74 y-~~~~p~~lk~~lD~l~----~~~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLS----SEQFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp S-SSSCCHHHHHHHHTCC----HHHHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCHHHHHHHHHhC----HhhhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 9 9999999999999985 24588999999984 3221 2356778899999999998653
No 77
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.65 E-value=3.5e-07 Score=90.80 Aligned_cols=156 Identities=8% Similarity=0.020 Sum_probs=108.9
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCc--ccccc----------------------------
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADE---------------------------- 149 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~---------------------------- 149 (714)
|++|+|+|||.. |+|..+|+.+.+.+++.++...++++|+. +....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999997 99999999999999987644678888887 64311
Q ss_pred ----chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchhHHHHH
Q 005109 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYEHFNKI 216 (714)
Q Consensus 150 ----~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~~f~~~ 216 (714)
-.++.+++...+.+||++|+| .|.+|..++.|++++... . ....++++++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 011345678899999999999 999999999999998610 0 01237899999996543445321334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
...+...|.-+|++.+-.+.....+. .++..++|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 56677788889998765443332232 335667777765554443
No 78
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.55 E-value=1.2e-06 Score=89.84 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=97.6
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------chHHHHhhcCCCeEEEEEeCC
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~vif~~sTy 170 (714)
..+++|+|+|||.. |+|+.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 35689999999985 999999999999998755 57889998876521 123456788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhcc-CCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKE-GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~-~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|..|...+.|++|+.... ....+++++.++++.+-.. ... .+...+...|..+|+..+
T Consensus 110 -n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 110 -HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp -SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred -CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEe
Confidence 9999999999999996210 1135899999999985332 111 356788888888998865
No 79
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.44 E-value=1.3e-06 Score=84.72 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=85.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc------------------cchHHHHhhcCCCeE
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENIV 163 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~v 163 (714)
|++|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +-.+..+++.+.+.+
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 75 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHIL 75 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSEE
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEE
Confidence 568999999965 99999999998755 234555544322 112234678899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHhccC-------CCccCCceEEEEeccCCchh-HHHHHHHHHHHHHHHcCCcccc
Q 005109 164 FFFLATYGDGEPTDNAARFYKWFTEKEG-------GEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~~~-------~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
||++|+| .|.+|..++.|++++..... ...++++++++|+.+..... .+..+.+.+...|..+|++.+.
T Consensus 76 i~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~ 152 (184)
T 1rli_A 76 IFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKG 152 (184)
T ss_dssp EEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccce
Confidence 9999999 99999999999999851100 01478999999987654211 2334567888888889998664
No 80
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.43 E-value=2.5e-06 Score=83.91 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=94.4
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vif~~sTy 170 (714)
|++|+|++||. .|+++.+|+.+.+.+. .+ ..++++|+.++..- -.++.+++...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~--~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DR--AQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TS--SEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CC--CEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999986 33 56788888765321 123457788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhc------cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 171 GDGEPTDNAARFYKWFTEK------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~------~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.|..|.-.+.|++|+... .....++++++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 999999999999999721 11235899999999876552 22334567888888899986543
No 81
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.41 E-value=2.6e-06 Score=88.61 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=97.1
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------chHHHHhhcCCCeEEEEEeC
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~vif~~sT 169 (714)
..+++|+|+|||.. |+|+.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998755 67888998776521 12245678889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhc-cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 170 YGDGEPTDNAARFYKWFTEK-EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~-~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
| +|..|..++.|++|+... .....+++++.++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999611 01135899999999985332 222 345678888888998865
No 82
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.38 E-value=2.5e-06 Score=83.93 Aligned_cols=126 Identities=9% Similarity=0.117 Sum_probs=96.1
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHH----HHHhhcCCCeeEEecCccccc------------c-chHHHHhhcCCCe
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYAD------------E-EDEYEEKLKKENI 162 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~------------~-~~~~~~~l~~~~~ 162 (714)
..|.+|+++.||.. |++..+|+.+.+ .+.+++....++++|+.++.. + -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 35789999999975 889999999999 666554346688888876542 1 1234567888999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+||++|+| +|.+|..++.|++|+. ...+++++.++++.|... .+.......+...|..+|+..+-
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~----~~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv~ 153 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILD----TDALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVVP 153 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSC----TTTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEECS
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhh----hhhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEcC
Confidence 99999999 9999999999999995 346899999999987433 33332233477888889998653
No 83
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.36 E-value=6.2e-06 Score=82.19 Aligned_cols=156 Identities=10% Similarity=0.069 Sum_probs=108.2
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------c-------------chH
Q 005109 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------E-------------EDE 152 (714)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------~-------------~~~ 152 (714)
|++|+|+|||..+ +|..+|+.+.+.+++.++...++++||.+.+. . -.+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999876 59999999999998874336688888865421 0 112
Q ss_pred HHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc--------cCC-----CccCCceEEEEeccC--Cchh-----H
Q 005109 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK--------EGG-----EWLQKLKYGVFGLGN--RQYE-----H 212 (714)
Q Consensus 153 ~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~--------~~~-----~~l~~~~~aVFGlGd--s~Y~-----~ 212 (714)
+.+++...+.+||++|+| .+..|.-.+.|++++... ..+ ..|+++++.++.... ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 346688899999999999 999999999999999510 111 258899988886533 2232 1
Q ss_pred HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 213 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 213 f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
+......+...|.-+|.+.+-....+..+. .+++.++|.++....+.+
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHH
Confidence 233446677778888998764443322222 466778887776665554
No 84
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.31 E-value=1.6e-05 Score=79.77 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=111.3
Q ss_pred cCCceEEEEEeCC------CchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCC
Q 005109 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (714)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~ 175 (714)
..|++|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..|-....+.+...+.+||++|.| .+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 3478999999997 3688999999999998765 5688899875 222233457789999999999999 9999
Q ss_pred CchHHHHHHHHH-h-cc------------------CCCccCCceEEEEeccCCchhHH-------HH-----HHHHHHHH
Q 005109 176 TDNAARFYKWFT-E-KE------------------GGEWLQKLKYGVFGLGNRQYEHF-------NK-----IAKVVDEI 223 (714)
Q Consensus 176 pdna~~F~~~L~-~-~~------------------~~~~l~~~~~aVFGlGds~Y~~f-------~~-----~~k~ld~~ 223 (714)
|.-.+.|++++. . .. ....|+|+++.|+-..+...+.| +. .-.-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 999999999985 1 10 12247899988776544442223 22 11224666
Q ss_pred HHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 224 L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778999877766655443 4578888888877777654
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.26 E-value=1.1e-05 Score=79.88 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=94.0
Q ss_pred CceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCCeeE-EecCccccc------------cchHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~------------~~~~~~~~l~~~~~vif~~s 168 (714)
.++|+|++|| ..|+++.+|+.+.+.+.+ + ..++ ++|+.+... +-.++.+++...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~-g--~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT-T--EEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC-C--CEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4689999999 669999999999888752 2 5577 777755421 11234566889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| +|..|.-.+.|++|+... ....+.++++++++.+...+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~-~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV-SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS-SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc-CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999721 12468999999999865444332 2456788888899998663
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.24 E-value=8e-06 Score=80.57 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=110.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-------------------cchHHHHhhcCCCeE
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~v 163 (714)
|+|+|++||.. +++..+|+.+.+.+ ..+ ..++++|+.+... +-.++.+++...+.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 57999999964 47899999998888 444 5688888865432 112345678889999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHhc------cC---CCccCCceEEEEeccCCc--hhHH--HHHHHHHHHHHHHcCCc
Q 005109 164 FFFLATYGDGEPTDNAARFYKWFTEK------EG---GEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 230 (714)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~------~~---~~~l~~~~~aVFGlGds~--Y~~f--~~~~k~ld~~L~~lGa~ 230 (714)
||++|.| .+..|.-.+.|++++... .. ...|+|+++.++..+... |..+ .....-+...|.-+|++
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 999999999999998510 00 125899999998776665 4211 11113455556667998
Q ss_pred cccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 231 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 231 ~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+-....+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666655555677889999999877766655
No 87
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.20 E-value=1.2e-05 Score=79.24 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccc----ccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
|++|+|++||..++...+++.+.+.+++.+ ..++++||.+.. .+-....+++...+.+||++|.| .+..|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 578999999999875578999999887765 457888886432 22233457789999999999999 99999999
Q ss_pred HHHHHHHHhc-----cCCCccCCceEEEEeccCCc---hh-------HHHHHHHHHHHHHHHcCCccccccccccCCCC-
Q 005109 180 ARFYKWFTEK-----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 243 (714)
Q Consensus 180 ~~F~~~L~~~-----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~- 243 (714)
+.|++++... ..+..|+|+++.++...... |. ......+-+...+.-+|.+.+-+....+....
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 9999998510 11246899999988765444 32 12233334567777889997766555444321
Q ss_pred -----chhhHHHHHHHHHHHHHhh
Q 005109 244 -----IEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 244 -----~e~~f~~W~~~l~~~L~~~ 262 (714)
.++++++..++....|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 88
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.47 E-value=2.3e-07 Score=92.00 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=92.3
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEe-cCccc---ccc---------chHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~vif~~s 168 (714)
+++|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.+. +.+ -.++.+++...+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 478999999987 8999999999998875 4 456777 77652 111 1123456788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| +|..|...+.|++|+..... ..++++++++|+.+...+. ...+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~~-~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVSP-QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 99 88999999999999962111 1589999999996433332 334567788888888988664
No 89
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.15 E-value=4.8e-05 Score=75.47 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=102.9
Q ss_pred CCceEEEEEeCCC------chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC
Q 005109 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (714)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p 176 (714)
...+|+|+.||.- +++..+|+.+.+.+.+.+ ..++++|+.+- .+-.++.+.+...+.+||++|.| .+..|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 56889999752 22334567889999999999999 99999
Q ss_pred chHHHHHHHHH--h------c------------cCCCccCCceEEEEeccCCchhHHH------------HHHHHHHHHH
Q 005109 177 DNAARFYKWFT--E------K------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 224 (714)
Q Consensus 177 dna~~F~~~L~--~------~------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~~k~ld~~L 224 (714)
.-.+.|++++. . . .....++++++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764 1 0 0123578999999876555322221 2223366778
Q ss_pred HHcCCccccccccccCCC--CchhhHHHHHHHH
Q 005109 225 ANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELV 255 (714)
Q Consensus 225 ~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l 255 (714)
.-+|++.+-+....+.+. ..++.++.+++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHL 199 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHHH
Confidence 888998775554433222 3444555554443
No 90
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.14 E-value=2.5e-05 Score=81.18 Aligned_cols=157 Identities=13% Similarity=-0.017 Sum_probs=105.8
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------------------------
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (714)
|++|+|+|||.. |++..+|+.+.+.+++.+ ..|+++||.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 589999999999998765 5678888875431
Q ss_pred --cc-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc---c------CCCccCCceEEEEeccCCc---hhH-
Q 005109 149 --EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK---E------GGEWLQKLKYGVFGLGNRQ---YEH- 212 (714)
Q Consensus 149 --~~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~---~------~~~~l~~~~~aVFGlGds~---Y~~- 212 (714)
++ ....+++...+.+||++|.| .+..|.-.+.|++++... . +...|+++++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 11234578899999999999 999999999999998511 0 0135889998888654443 421
Q ss_pred -HH----HHHHHHH-HHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 213 -FN----KIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 213 -f~----~~~k~ld-~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+ .....+. ..|.-+|++.+-+...+......++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222 244567888765544433333345567778777777776654
No 91
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.14 E-value=2.7e-05 Score=77.73 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=110.2
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-----c------------------------c
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E------------------------E 150 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~------------------------~ 150 (714)
|++|+|++||-. +++..+|+.+.+.+++.++...++++||.+++. + -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999965 789999999999998875446788888865431 0 1
Q ss_pred hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchhH-----HHHH
Q 005109 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 216 (714)
Q Consensus 151 ~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 216 (714)
.++.+++...+.+||++|.| .+..|.-.+.|++++... . ....|+++++.++......|.+ +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12345678899999999999 999999999999998511 0 1124789998888753334532 2334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
...+...|.-+|++.+-.+..+..+. .++.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~-~~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQ-FPDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTT-SGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEecccc-CchHHHHHHHHHHHHHHHH
Confidence 46677788888998765543333333 2456778887766655543
No 92
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.07 E-value=3.6e-05 Score=77.76 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=108.8
Q ss_pred ceEEEEEeCCCc--hHHHHHHHHHHHHHhhcCCCeeEEecCccccc----------------------------------
Q 005109 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (714)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (714)
|+|+|++||... ++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 689999999764 49999999999998875 5688888865321
Q ss_pred -cc-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc------c---CCCccCCceEEEEeccCCc---hhH--
Q 005109 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK------E---GGEWLQKLKYGVFGLGNRQ---YEH-- 212 (714)
Q Consensus 149 -~~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~------~---~~~~l~~~~~aVFGlGds~---Y~~-- 212 (714)
+| ....+++...+.+||++|.| .+..|.-.+.|++++... . ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 11 11234578899999999999 999999999999998510 0 0135899999888554433 421
Q ss_pred HHHHHHHH----HH-HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhC
Q 005109 213 FNKIAKVV----DE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 264 (714)
Q Consensus 213 f~~~~k~l----d~-~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 264 (714)
++...+.+ .+ .+.-+|.+.+-+....+.+...++...+|.++....|..+..
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 22211221 11 222357776666656666666788899999998888887653
No 93
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=97.99 E-value=0.00017 Score=70.76 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=88.5
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccc---ccc--------hHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA---DEE--------DEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---~~~--------~~~~~~l~~~~~vif~~sTy 170 (714)
+++|.|+.||. ...+.++|+.+++.+.. ...++++|+.+.. .+. ..+.+.+...+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 57899999994 45678899888776643 2567788876532 111 11235678899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|..|.-.+.|++|+........+.++.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 999999999999999622223468999999998644343322 234567778888898754
No 94
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=97.88 E-value=0.00026 Score=71.25 Aligned_cols=160 Identities=11% Similarity=0.046 Sum_probs=111.7
Q ss_pred CCceEEEEEeCC-----CchHHHHHHHHHHHHHhhcCCC-eeEEecCcccccc---------------------------
Q 005109 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--------------------------- 149 (714)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--------------------------- 149 (714)
.|++|+|+.||- .+++..+++.+.+.+++.++.. .++++||.+++..
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999995 5889999999999998876556 7888988654310
Q ss_pred --chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------cCC--Ccc-CCceEEEEeccCCch------h
Q 005109 150 --EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------EGG--EWL-QKLKYGVFGLGNRQY------E 211 (714)
Q Consensus 150 --~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~~~--~~l-~~~~~aVFGlGds~Y------~ 211 (714)
-.++.+++...+.+||++|.| .+..|.-.+.|++|+... ..+ ..+ ++++..|+......| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 012345678889999999999 999999999999998611 001 135 789988886533334 2
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccccCC-CCchhhHHHHHHHHHHHHHhhh
Q 005109 212 HFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 212 ~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~-~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+......+...|.-+|++.+-.+.....+ ...++.++++.+++-...++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 234455667788888899876443322222 2357778888887766555543
No 95
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.85 E-value=0.00014 Score=70.54 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=102.3
Q ss_pred ceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
|+|+|++||-. +.+..+++ ++.+.. ..++++||.+ ..|-.+..+++...+.+||++|.| .+..|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~----~~~~~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFK----AAIENF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHH----HHHTTC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHH----HHHhcC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 47999999975 44444433 333322 3488999986 333344567899999999999999 9999999999
Q ss_pred HHHHHHh----ccCCCccCCceEEEEeccCCchhHH----------HHHHHHHHHHHHHcCCccccccccccCCCCchhh
Q 005109 182 FYKWFTE----KEGGEWLQKLKYGVFGLGNRQYEHF----------NKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 247 (714)
Q Consensus 182 F~~~L~~----~~~~~~l~~~~~aVFGlGds~Y~~f----------~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~ 247 (714)
|++++.. -.....|+|+++.++.......+.| ....+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 9998751 0112358999998886654442222 2333444566677899887666655555566888
Q ss_pred HHHHHHHHHHHHHh
Q 005109 248 FSAWRELVWPELDN 261 (714)
Q Consensus 248 f~~W~~~l~~~L~~ 261 (714)
.++|.++....|.+
T Consensus 153 ~~~~l~~~~~~l~~ 166 (177)
T 3ha2_A 153 QQRLLVAYQQYATN 166 (177)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999888777764
No 96
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=97.84 E-value=0.00014 Score=71.55 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=101.8
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeE-EecCccccc-------------cchHHHHhhcCCCeEEEEE
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD-------------EEDEYEEKLKKENIVFFFL 167 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~-------------~~~~~~~~l~~~~~vif~~ 167 (714)
+++|+++.||- .+++..+|+.+.+.+ ..+ ..++ ++|+.+... +-.++.+++...+.+||++
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~g--~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~s 80 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIA-PAS--MEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVT 80 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTS-CTT--EEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEE
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHc-cCC--CEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEe
Confidence 57899999995 578888888776533 222 4566 777765422 1112456788899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc-c-cc------ccc
Q 005109 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VG------LGD 239 (714)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~-~-~g------~gD 239 (714)
|+| +|..|...+.|++|+... ....+.+++.++++..-..+... .+...+...|..+|+..+- | .. .-|
T Consensus 81 P~y-~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~f~ 157 (193)
T 3svl_A 81 PEY-NYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVD 157 (193)
T ss_dssp CCB-TTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGGEE
T ss_pred ccc-CCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhhcC
Confidence 999 999999999999999721 12458999999998622222222 3557788888899998652 1 11 112
Q ss_pred CCCC--chhhHHHHHHHHHHHHHhhh
Q 005109 240 DDQC--IEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 240 ~~~~--~e~~f~~W~~~l~~~L~~~~ 263 (714)
++.+ .+++..+..+.+...+....
T Consensus 158 ~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 158 PQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp TTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 2211 34556666666666665554
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.56 E-value=0.00066 Score=74.61 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=104.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcc----ccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD----YADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~----~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
+++|+|++||-.++...+.+.+.+.+... ..++++||.+ +..+-....+.+...+.+||++|.| .+..|.-.
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~l 311 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLL 311 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHH
Confidence 47899999998887666888888887653 3578887732 2233334457789999999999999 99999999
Q ss_pred HHHHHHHHh-----ccCCCccCCceEEEEeccCCchhHH--------HHHHHHHHHHHHHcCCccccccccccCCCCchh
Q 005109 180 ARFYKWFTE-----KEGGEWLQKLKYGVFGLGNRQYEHF--------NKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 246 (714)
Q Consensus 180 ~~F~~~L~~-----~~~~~~l~~~~~aVFGlGds~Y~~f--------~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~ 246 (714)
+.|++++.. ...+..|+|+++.++.......+.| ...-.-+...|.-+|++-+-+........-.++
T Consensus 312 K~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d~ 391 (413)
T 3l9w_A 312 KLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDE 391 (413)
T ss_dssp HHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCHH
T ss_pred HHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCHH
Confidence 999999851 1122358999988775432222222 223355666777789987655544433333456
Q ss_pred hHHHHHHHHHHHHHhhh
Q 005109 247 DFSAWRELVWPELDNLL 263 (714)
Q Consensus 247 ~f~~W~~~l~~~L~~~~ 263 (714)
+..++.++....|..+.
T Consensus 392 ~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 392 TLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677666666666554
No 98
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.16 E-value=0.0039 Score=64.69 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=105.0
Q ss_pred CCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-------------------------------
Q 005109 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------- 149 (714)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------- 149 (714)
..|||+|+||+- .+.+..+++.+.+.+++.| ..|+++||-+...+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGT 98 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCC
Confidence 457899999984 4668889999999998876 56889998432211
Q ss_pred ---c-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh------cc-----------CCCccCCceEEEEeccCC
Q 005109 150 ---E-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE------KE-----------GGEWLQKLKYGVFGLGNR 208 (714)
Q Consensus 150 ---~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~------~~-----------~~~~l~~~~~aVFGlGds 208 (714)
| ....+.+...+.+||+.|.| .+..|.-.+.|++.+.. .. ....|+|+++.++-.-+.
T Consensus 99 ~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~ 177 (280)
T 4gi5_A 99 QSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGG 177 (280)
T ss_dssp SCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSS
T ss_pred CcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCC
Confidence 0 11234577889999999999 99999999999998750 00 112477888776643333
Q ss_pred chhHHHHH--HHHHHHHHH--------HcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 209 QYEHFNKI--AKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 209 ~Y~~f~~~--~k~ld~~L~--------~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
..+.|... ...+++.|. -.|.+.+-|....+.+...++++++|.+++-..|..+.
T Consensus 178 ~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 178 WAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp CGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 32222111 112333332 13777666666656666678899999999888888765
No 99
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=79.58 E-value=3.7 Score=36.07 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=35.6
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccc
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (714)
..+++|+++.||--||+.-++.+|.+.+.+.+....+...++.++.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 64 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh
Confidence 3467899999999999999999999999887633334555665543
No 100
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=66.73 E-value=8.1 Score=33.47 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy 170 (714)
+++|+++.|+--||+ -+++++.+.+++++....+.-.++.+.. +.+.+++ +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~-------~~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAG-------EKGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTT-------HHHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhccCCC-EEEEccch
Confidence 578999999999999 8999999999988744344444555543 2344566 45555544
No 101
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=60.88 E-value=10 Score=32.85 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY 146 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~ 146 (714)
++|+++.+|--||+ -++++|.+.+.+.+....+...++.++
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~ 45 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRL 45 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTH
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHH
Confidence 56999999999999 999999999988763333444444443
No 102
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=59.37 E-value=17 Score=32.81 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=57.4
Q ss_pred EEEeCCCchHHHHHHHHH-HHHHhhcCCCeeEEecCccccccchHHHHhhcCCCe-EEEEEeCCCCCCCCchHHHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALA-DEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la-~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~pdna~~F~~~L 186 (714)
|+-++.-|-.-.+-..+. ..++..| ++|+++-..-+ .+++.....+.+. +|.+|++. +...+.+.++.+.|
T Consensus 6 vvla~~~~d~HdiG~~~v~~~l~~~G----~~Vi~lG~~~p-~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 6 IVLGVIGSDCHAVGNKILDHAFTNAG----FNVVNIGVLSP-QELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHHHTT----CEEEEEEEEEC-HHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHHH
Confidence 444555554444444433 4445554 57777754322 2334444444443 44444444 44445677777777
Q ss_pred HhccCCCccCCceEEEEecc---CCchhHHHHHHHHHHHHHHHcCCccccccc
Q 005109 187 TEKEGGEWLQKLKYGVFGLG---NRQYEHFNKIAKVVDEILANQGAKRLVPVG 236 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g 236 (714)
+. ..+.+.++.|=|-. ...| . ...+.+.++|+..+++.|
T Consensus 79 ~~----~g~~~i~v~vGG~~~~~~~~~---~----~~~~~~~~~G~d~~~~~g 120 (137)
T 1ccw_A 79 DE----AGLEGILLYVGGNIVVGKQHW---P----DVEKRFKDMGYDRVYAPG 120 (137)
T ss_dssp HH----TTCTTCEEEEEESCSSSSCCH---H----HHHHHHHHTTCSEECCTT
T ss_pred Hh----cCCCCCEEEEECCCcCchHhh---h----hhHHHHHHCCCCEEECCC
Confidence 62 22335666554532 2223 2 234677889999998765
No 103
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=52.78 E-value=13 Score=32.28 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=31.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCC-CeeEEecCcc
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDIDD 145 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl~~ 145 (714)
.+++|+++.++--||+.-++.+|.+.+.+.+.. ..+...++.+
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~ 60 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGE 60 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHH
Confidence 367899999999999999999999999877632 2334444443
No 104
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=52.28 E-value=24 Score=36.11 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=41.2
Q ss_pred ccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccC
Q 005109 309 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 360 (714)
Q Consensus 309 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N 360 (714)
+....++.++|+..+.++.++....++++.|.... .+.|+||.++.|..+.
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 73 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSS
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCC
Confidence 44567788999999999855555789999998764 5899999999998764
No 105
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=48.05 E-value=23 Score=25.66 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhhcCC
Q 005109 60 TSIAVLIGCVVVFILRRSSS 79 (714)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~ 79 (714)
.++.+++....+++|||+..
T Consensus 20 v~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 33333333344555655543
No 106
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=45.79 E-value=31 Score=30.67 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=34.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcC-CCeeEEecCccc
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDIDDY 146 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~-~~~v~v~dl~~~ 146 (714)
.+++|+++.++--||+..++.+|.+.+.+.+. ...+...++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 46789999999999999999999999987763 334444455544
No 107
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=45.18 E-value=31 Score=34.85 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=41.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.|++|+|+=|++. +..|..|.+.|++.+ ..|++++..+...+ .++|.+++++|+.- +..+.-.++..+.+
T Consensus 3 ~m~~vLiV~g~~~---~~~a~~l~~aL~~~g--~~V~~i~~~~~~~~----~~~L~~yDvIIl~d-~~~~~l~~~~~~~L 72 (259)
T 3rht_A 3 AMTRVLYCGDTSL---ETAAGYLAGLMTSWQ--WEFDYIPSHVGLDV----GELLAKQDLVILSD-YPAERMTAQAIDQL 72 (259)
T ss_dssp ---CEEEEESSCT---TTTHHHHHHHHHHTT--CCCEEECTTSCBCS----SHHHHTCSEEEEES-CCGGGBCHHHHHHH
T ss_pred CCceEEEECCCCc---hhHHHHHHHHHHhCC--ceEEEecccccccC----hhHHhcCCEEEEcC-CccccCCHHHHHHH
Confidence 3678888843332 233555666666655 56778777665322 24688999888862 22122234455666
Q ss_pred HHHHH
Q 005109 183 YKWFT 187 (714)
Q Consensus 183 ~~~L~ 187 (714)
.+|..
T Consensus 73 ~~yV~ 77 (259)
T 3rht_A 73 VTMVK 77 (259)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66764
No 108
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.54 E-value=27 Score=25.30 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhhcCC
Q 005109 65 LIGCVVVFILRRSSS 79 (714)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (714)
++...++++|||+..
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 333344455555543
No 109
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=43.02 E-value=26 Score=25.37 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 005109 62 IAVLIGCVVVFILRRSSS 79 (714)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (714)
++++++..+++++||++.
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 444445444555555543
No 110
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.35 E-value=75 Score=27.41 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEE--ecCccccccchHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKV--VDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v--~dl~~~~~~~~~~~~~l~~~~~vif~~sTy 170 (714)
+++|+++.++ .++|--+++++.+.+++++ ..+++ ....++. +.+.++++ |++.|-.
T Consensus 6 ~mkIlL~C~a-GmSTsllv~km~~~a~~~g--i~v~i~a~~~~~~~-------~~~~~~Dv-vLLgPQV 63 (108)
T 3nbm_A 6 ELKVLVLCAG-SGTSAQLANAINEGANLTE--VRVIANSGAYGAHY-------DIMGVYDL-IILAPQV 63 (108)
T ss_dssp CEEEEEEESS-SSHHHHHHHHHHHHHHHHT--CSEEEEEEETTSCT-------TTGGGCSE-EEECGGG
T ss_pred CceEEEECCC-CCCHHHHHHHHHHHHHHCC--CceEEEEcchHHHH-------hhccCCCE-EEEChHH
Confidence 5677766665 5888889999999999887 44555 3343322 23456775 5555544
No 111
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=35.91 E-value=1.7e+02 Score=29.67 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=43.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
..+|+|+-|...=.-+..+..|++.|.+.+ ...|.+.+-.+...+...+.+.|.+++++|+ .+.|+--+++..+.|.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g-~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~--~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSG-RFDVDFVISPEQGKDMSGFVLDFSPYQLVVL--DYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTT-SEEEEEEECCCTTSCCTTCCCCCTTCSEEEE--CCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcC-CEEEEEEeCCccccchhHHhhhhhcCCEEEE--eCCCCcCCHHHHHHHH
Confidence 457888865443336777788888887665 2445554321000000111235888998884 4443222334556677
Q ss_pred HHHH
Q 005109 184 KWFT 187 (714)
Q Consensus 184 ~~L~ 187 (714)
+++.
T Consensus 81 ~yV~ 84 (281)
T 4e5v_A 81 EYVQ 84 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 112
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=32.34 E-value=1.9e+02 Score=28.75 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCchHH---------HHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCC
Q 005109 104 KQKVTIFFGTQTGTAE---------GFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE 174 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae---------~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~ 174 (714)
..+|+|+=+-.+..-. .++..|++.|...+ ..|++..+++..... -.+.|.+++++|+...+.|+--
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~g--f~V~~~t~dd~~~~~--~~~~L~~~DvvV~~~~~~~~~l 82 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAG--FDAATAVLDEPEHGL--TDEVLDRCDVLVWWGHIAHDEV 82 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTT--CEEEEEESSSGGGGC--CHHHHHTCSEEEEECSSCGGGS
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCC--cEEEEEeccCccccC--CHhHHhcCCEEEEecCCCCCcC
Confidence 4678877443333321 23445566666554 566766554432110 0245889999998755553333
Q ss_pred CCchHHHHHHHHHhccCCCccCCceEEEEecc
Q 005109 175 PTDNAARFYKWFTEKEGGEWLQKLKYGVFGLG 206 (714)
Q Consensus 175 ~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlG 206 (714)
.++..+.|.+|+. +|.-+.++-.|
T Consensus 83 ~~~~~~al~~~V~--------~GgG~vgiH~a 106 (252)
T 1t0b_A 83 KDEVVERVHRRVL--------EGMGLIVLHSG 106 (252)
T ss_dssp CHHHHHHHHHHHH--------TTCEEEEEGGG
T ss_pred CHHHHHHHHHHHH--------cCCCEEEEccc
Confidence 4445667777775 35555555444
No 113
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=28.39 E-value=45 Score=29.12 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=35.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc-hHHHHhhcCCCeEEEE
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-DEYEEKLKKENIVFFF 166 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-~~~~~~l~~~~~vif~ 166 (714)
..-+.|.|||+.+++.+.++.|.+ +| ..+.++++-...+=+ ..+.+.+.+.+.++++
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~~----~G--i~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLKE----EG--ISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHHH----TT--CCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CCEEEEEECccHHHHHHHHHHHHH----CC--CceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 345677799999999998876643 44 456777766554322 2233445555555433
No 114
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=28.36 E-value=45 Score=31.22 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=40.1
Q ss_pred cCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 005109 195 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 251 (714)
Q Consensus 195 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W 251 (714)
.+.++++|+-.||....-++..+..+.++|.++|++...-....|+-..+.+.+..|
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 567899999999997666777888899999999997554333444433344444444
No 115
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=28.20 E-value=43 Score=35.03 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCeEEEecCCc--chhHHHHHHHHHHhh
Q 005109 564 VPIIMIGPGTG--LAPFRGFLQERFALQ 589 (714)
Q Consensus 564 ~piImIa~GTG--IAPfrs~lq~~~~~~ 589 (714)
+.|++.||||| |-|..++.+++.+++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 45888999997 899999999987643
No 116
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.28 E-value=35 Score=31.80 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.2
Q ss_pred cCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHH
Q 005109 195 LQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 252 (714)
Q Consensus 195 l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~ 252 (714)
.+..+++|+-.||.-+ .-++..+..+.++|+++|++...-....|+ ..+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 3457899999999876 456777888999999999986543334454 44555555554
No 117
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=23.89 E-value=33 Score=21.41 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.4
Q ss_pred CceEEEEeccCC
Q 005109 197 KLKYGVFGLGNR 208 (714)
Q Consensus 197 ~~~~aVFGlGds 208 (714)
.+-|-|||+||-
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 467889999974
No 118
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.34 E-value=23 Score=33.50 Aligned_cols=41 Identities=15% Similarity=0.332 Sum_probs=30.7
Q ss_pred CccCCceEEEEeccCCch-------hHHHHHHHHHHHHHHHcCCcccc
Q 005109 193 EWLQKLKYGVFGLGNRQY-------EHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 193 ~~l~~~~~aVFGlGds~Y-------~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
...+..+++|+-.||.-+ .-++..+..+.++|+++|++...
T Consensus 11 ~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~ 58 (178)
T 2pjk_A 11 NAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIG 58 (178)
T ss_dssp --CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEE
Confidence 346778999999999655 23566677889999999998543
No 119
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=20.25 E-value=1.5e+02 Score=30.71 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCC-eEEEEEeCCCCCCCCchHHHHHHHHHhccCCCcc
Q 005109 117 TAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKEN-IVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWL 195 (714)
Q Consensus 117 tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~-~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l 195 (714)
|+...++.+++.++++|-+..+.++|+.....-......-+-+.. .+-|+.- +..|.| .+...+...+. ...
T Consensus 164 n~~~~i~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlG-v~~g~p-~~p~~L~~~~~-----~lp 236 (316)
T 3c6c_A 164 NTTRTLRAMARRFQELGIKPELEVFSPGDILFGKQLIEEGLIDGVPLFQMVLG-VLWGAP-ASTETMIYQRN-----LIP 236 (316)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEECS-CTTSCC-SCHHHHHHHHT-----TSC
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEe-cCCCCC-CCHHHHHHHHH-----hcC
Confidence 667777777788877774444566665443211000011122334 3444443 534544 55666666663 123
Q ss_pred CCceEEEEeccCCchh
Q 005109 196 QKLKYGVFGLGNRQYE 211 (714)
Q Consensus 196 ~~~~~aVFGlGds~Y~ 211 (714)
.+-.++++|.|-.+.+
T Consensus 237 ~~~~wsv~g~Gr~q~p 252 (316)
T 3c6c_A 237 ANAQWAAFGIGRDQMP 252 (316)
T ss_dssp TTSEEEEECCGGGHHH
T ss_pred CCCeEEEEecCcchHH
Confidence 5788999999977763
Done!