Query 005113
Match_columns 714
No_of_seqs 139 out of 229
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 1E-223 2E-228 1934.1 14.2 698 11-709 1-740 (762)
2 KOG1107 Membrane coat complex 100.0 3E-207 6E-212 1691.4 53.1 679 27-708 1-694 (760)
3 KOG3682 Predicted membrane pro 100.0 6.1E-45 1.3E-49 400.5 41.3 536 15-638 141-759 (930)
4 KOG1107 Membrane coat complex 99.5 3E-13 6.4E-18 152.4 13.9 197 36-268 148-346 (760)
5 KOG1410 Nuclear transport rece 84.1 98 0.0021 37.3 19.6 100 318-422 253-354 (1082)
6 PF03000 NPH3: NPH3 family; I 61.3 1.3E+02 0.0027 32.2 12.4 58 332-397 192-249 (258)
7 KOG2274 Predicted importin 9 [ 42.7 5.8E+02 0.013 32.1 15.0 141 365-506 610-792 (1005)
8 PF10345 Cohesin_load: Cohesin 38.7 7.5E+02 0.016 29.5 15.8 37 430-467 39-75 (608)
9 PF14675 FANCI_S1: FANCI solen 36.7 5.2E+02 0.011 27.0 12.7 142 368-536 7-162 (223)
10 KOG4524 Uncharacterized conser 35.0 1.1E+03 0.023 30.1 16.9 61 477-539 797-857 (1014)
11 PF14677 FANCI_S3: FANCI solen 34.0 4.3E+02 0.0094 27.5 11.0 110 258-396 105-218 (219)
12 PF08767 CRM1_C: CRM1 C termin 33.5 3E+02 0.0065 30.1 10.3 147 343-493 91-247 (319)
13 KOG1991 Nuclear transport rece 29.3 1.3E+03 0.028 29.4 17.7 60 442-508 715-774 (1010)
14 KOG1422 Intracellular Cl- chan 27.9 64 0.0014 33.4 3.6 73 63-153 124-202 (221)
15 PF11864 DUF3384: Domain of un 26.7 1E+03 0.022 27.4 20.7 103 428-536 249-355 (464)
16 PF07540 NOC3p: Nucleolar comp 23.8 2.9E+02 0.0062 25.1 6.6 36 126-161 25-60 (95)
17 KOG1410 Nuclear transport rece 23.0 8.8E+02 0.019 29.7 11.9 57 316-375 178-236 (1082)
18 PF11864 DUF3384: Domain of un 22.4 1.2E+03 0.026 26.7 19.0 258 423-697 3-318 (464)
19 PF06743 FAST_1: FAST kinase-l 21.6 1.4E+02 0.0031 25.1 4.1 45 323-371 19-64 (71)
20 KOG2148 Exocyst protein Sec3 [ 21.3 1.5E+03 0.033 27.6 13.3 77 282-378 785-865 (867)
21 COG2147 RPL19A Ribosomal prote 21.3 1.6E+02 0.0034 28.8 4.7 45 37-81 96-145 (150)
22 KOG1534 Putative transcription 21.1 7E+02 0.015 26.4 9.5 168 167-361 70-255 (273)
23 PF08518 GIT_SHD: Spa2 homolog 20.9 63 0.0014 23.4 1.4 21 53-73 6-26 (31)
24 PF15297 CKAP2_C: Cytoskeleton 20.7 2.8E+02 0.0062 30.9 7.1 83 273-375 104-186 (353)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=1e-223 Score=1934.12 Aligned_cols=698 Identities=54% Similarity=0.871 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchh
Q 005113 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (714)
Q Consensus 11 k~L~ea~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~d 90 (714)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q 005113 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (714)
Q Consensus 91 LYE~VQyagnIlPRLYLmItVg~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g 170 (714)
|||+||||||||||||||||||++|++++++|++||||||+|||||||||+|||||||||+|++|++|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 678899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcc
Q 005113 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (714)
Q Consensus 171 ~v~dsi~Fll~NF~EMNkLWVRlqhqg~~rer~~r~~eR~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~ 250 (714)
++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||+|+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchh-----------hhH
Q 005113 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (714)
Q Consensus 251 D~~AQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~-----------~~~ 319 (714)
|++||+|||||||||||||||++||++||++|.+++|+|++++|+++||+||++|+.+++++.++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999877654321 278
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCC---CCCChHHHHHHHHHH
Q 005113 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALL 396 (714)
Q Consensus 320 ~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL 396 (714)
++|++||+++.++++++|++|++|++++++|+++|+++|||++++|||.+|+.|++++...+ ...++++.++|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998872 233667888999999
Q ss_pred HchhhhcccHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCC----
Q 005113 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (714)
Q Consensus 397 ~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~rk~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~---- 472 (714)
+.|++++.++.+++++++|++|+++|++++||+||..|+++++++++.|+|+++++.+|++++||++|+++++.++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887653
Q ss_pred CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCC-------CC
Q 005113 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEEN-------PF 545 (714)
Q Consensus 473 ~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~-------~~ 545 (714)
.+++||.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|||+|+++..+.. ..
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~ 559 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD 559 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999876411 00
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHH
Q 005113 546 GEEGSTTPKKVFQLLNQTIETLYGVP-APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLI 624 (714)
Q Consensus 546 ~~~~~~~~kk~f~fv~~~i~~l~~~~-~~~~~lkLyLq~A~~Ad~~~~~~iayeFf~qAf~iyEe~i~ds~~Q~~al~~i 624 (714)
.+....+++++|+|+|+||+.|.+.. .+++++|||||||++||++|++++|||||+|||++|||+|+||++|++||.+|
T Consensus 560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i 639 (762)
T PF03635_consen 560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI 639 (762)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 11112356899999999999997544 48999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhccCCCC-----CCcccchHHHHHHhhh-------C
Q 005113 625 IGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQ-----DNMKDGERKLCIVCSN-------T 692 (714)
Q Consensus 625 i~tL~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshL~w~~~~-----~~~~d~krVleCLq~~-------~ 692 (714)
||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. ..+||||||+|||||| |
T Consensus 640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999863 4699999999999997 6
Q ss_pred CcchH----HHHhhhhccccc
Q 005113 693 WPVQS----ISILGWCLPTHM 709 (714)
Q Consensus 693 d~~~s----~~il~~~~~~~~ 709 (714)
||.+| |||||||+.|.-
T Consensus 720 d~~~~~~LfveILn~ylyf~~ 740 (762)
T PF03635_consen 720 DPSQSVQLFVEILNRYLYFFE 740 (762)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHHhhh
Confidence 99999 999999999874
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-207 Score=1691.44 Aligned_cols=679 Identities=68% Similarity=1.031 Sum_probs=651.8
Q ss_pred HHHHhhhccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchhhHHHHHHhcchhhHHH
Q 005113 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (714)
Q Consensus 27 Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIlPRLY 106 (714)
|+||+|+||+||||||+++||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 005113 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (714)
Q Consensus 107 LmItVg~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~v~dsi~Fll~NF~EM 186 (714)
||||||++|++++++|+|||||||+|||||||||+||||||+||+|++|++||+.++.+++.+..+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877777889999999999999
Q ss_pred HHHHHHhhccCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhC
Q 005113 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (714)
Q Consensus 187 NkLWVRlqhqg~~rer~~r~~eR~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~~AQeYLmd~IiQvF 266 (714)
||||||||||||+||||||++||+|||||||+|||||||++|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 005113 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (714)
Q Consensus 267 PdefHl~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~ 346 (714)
|||||++||+.+|++|.+++|+|+++.++.+|++||++|+.+++++-|..-.+.+|++||.++.+++++||+||+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887766688999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHH--HHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHhcCCc
Q 005113 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (714)
Q Consensus 347 l~~sll~~~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~~ 424 (714)
+++|+++|+++|||++.+|+|++| +.|....+..+...+..+.+++.++|..|++.|+++.+++++.+|+++++.+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 777777777665566778899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 005113 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (714)
Q Consensus 425 ~~rk~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l 504 (714)
++++.||..|++++++.++.+.+.++++.+|+++++|++|.++.+.++.|+++|.+||++||++||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005113 505 CTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCA 584 (714)
Q Consensus 505 ~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~~~~~~lkLyLq~A 584 (714)
..+|++|++||++ ++||+||+||++|+|+|+++..++....|+ +..++++|+|+.+| ..+++++.|+++||||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~A 557 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQCA 557 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHHH
Confidence 9999999999987 999999999999999999998755544444 34468999999999 55567789999999999999
Q ss_pred HHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhccCchhhHHHHH
Q 005113 585 EAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVY 664 (714)
Q Consensus 585 ~~Ad~~~~~~iayeFf~qAf~iyEe~i~ds~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~ 664 (714)
++||+||++++|||||+|||++|||+|||||+|++||.+|||||++||||++||||+|+||||+||||||||||||||||
T Consensus 558 ~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaVy 637 (760)
T KOG1107|consen 558 EAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAVY 637 (760)
T ss_pred HhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCC--CCCcccchHHHHHHhhh-------CCcchH----HHHhhhhcccc
Q 005113 665 ACSHLFWVDD--QDNMKDGERKLCIVCSN-------TWPVQS----ISILGWCLPTH 708 (714)
Q Consensus 665 ~cshL~w~~~--~~~~~d~krVleCLq~~-------~d~~~s----~~il~~~~~~~ 708 (714)
+||||||+++ .++++|||||+|||||+ |||-++ |||||||+-|-
T Consensus 638 tcsHLfW~~~~ngE~l~dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfy 694 (760)
T KOG1107|consen 638 TCSHLFWSGRTNGEKLKDGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFY 694 (760)
T ss_pred eeehhhhcccCCccccCchHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhh
Confidence 9999999997 46799999999999997 599888 99999998763
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=100.00 E-value=6.1e-45 Score=400.53 Aligned_cols=536 Identities=17% Similarity=0.190 Sum_probs=428.4
Q ss_pred HHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHh-hhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhc-------CC
Q 005113 15 AGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSE-LRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRR-------GC 86 (714)
Q Consensus 15 ea~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~E-LRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~-------g~ 86 (714)
|-+..|-++.--.++||..++-.+++|...+.-+- +-|+.+ .+|+.-|+.++|.|+.+|+..+++.+. |-
T Consensus 141 eyV~rI~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~ 218 (930)
T KOG3682|consen 141 EYVDRILELSTKSIRAWSLDNTVENLKSDISSFKLLLDTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNL 218 (930)
T ss_pred HHHHHHHHHHHhHHHhhhhhhHHHHHHhhhhhhhhccchhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhh
Confidence 33445777788889999999999999984333332 335555 889999999999999999999999853 11
Q ss_pred ---Cc------------------hhhHHHH----------HH---hcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005113 87 ---SI------------------IDLYELV----------QH---AGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVE 132 (714)
Q Consensus 87 ---~l------------------~dLYE~V----------Qy---agnIlPRLYLmItVg~~yi~~~~~p~~eiLkDLvE 132 (714)
+. .+..|.. |- .....||-||+.+|..|+-|+-...++|.|.||+-
T Consensus 219 ~~~~~~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~ 298 (930)
T KOG3682|consen 219 KNVKKASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSA 298 (930)
T ss_pred hhhhhhHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 11 1222322 11 23589999999999999999998778999999999
Q ss_pred HHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHhhccCCchhhhhHHHHHHHH
Q 005113 133 MCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSEL 212 (714)
Q Consensus 133 McRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRlqhqg~~rer~~r~~eR~eL 212 (714)
|.||.|+|+..+|+|+|+++.+...-|..+ |+++.++-.++.-|...|
T Consensus 299 m~rg~~dPlvs~yar~y~~~~~~~i~~~~~-------~yL~k~~~d~l~~f~~~~------------------------- 346 (930)
T KOG3682|consen 299 MFRGEQDPLVSDYARNYFLKLSEIIDIPIR-------FYLEKSMIDCLKFFDAAN------------------------- 346 (930)
T ss_pred HhhccCCchHHHHHHHHHHHHhhhcCcchH-------HHHHHHHHHHHHHHHHHh-------------------------
Confidence 999999999999999999999987644432 444444433333343322
Q ss_pred HHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCHH
Q 005113 213 RDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIK 292 (714)
Q Consensus 213 ~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~~AQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v~ 292 (714)
+.+ +-|++=.-|.+.+.|...+-|++ +|+|.|++---|.+-|..-+++-+++ |-||.
T Consensus 347 ---~d~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~ 403 (930)
T KOG3682|consen 347 ---LDI-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVM 403 (930)
T ss_pred ---HHH-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHH
Confidence 122 34455566888899999999988 99999999999999998877765443 44578
Q ss_pred HHHHHHHHHHHH-HHh------------hccCCCc------------------hhhhHHHHHHHHHHHHHHHhhcCCCCh
Q 005113 293 TVLSRLMERLSN-YAA------------SSTEVLP------------------EFLQVEAFSKLNNAIGKVIEAQADMPI 341 (714)
Q Consensus 293 ~Il~sLi~RL~~-y~~------------~~~~~~~------------------~~~~~~lf~~f~~~i~~l~~~~~~~~~ 341 (714)
.++++++.-|+. +.+ +++.|.| ++...++.+..|..++++-+ +
T Consensus 404 ~lLh~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------~ 477 (930)
T KOG3682|consen 404 ELLHRKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------F 477 (930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------H
Confidence 888888887764 221 1222222 23345678899999999885 7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHhc
Q 005113 342 LGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEY 421 (714)
Q Consensus 342 ~d~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~ 421 (714)
+||+.|.++|+.|.+++|..+ +||++|+++..+++.+.. .++.+.+|++++.+-++|+.|++.++.+++|.+++|+
T Consensus 478 qdyv~c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~--~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl 553 (930)
T KOG3682|consen 478 QDYVDCCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQ--TEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDL 553 (930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhc--cchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHH
Confidence 999999999999999999976 999999999999999875 4678889999999999999999999999999999999
Q ss_pred CCchhH-HHHHHHHHHHHHhc-CccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhc-CCCHH
Q 005113 422 VDSETN-KVMAMVIIQSIMKN-NTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDTE 498 (714)
Q Consensus 422 l~~~~r-k~va~~Il~~~l~~-~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~-~~D~e 498 (714)
++++++ .+|+..|++.+.++ ..+|+|+..++.|++.|++|+ |..+... -+|+.+....+||+|+.+|+ |.|+|
T Consensus 554 ~~~~~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~-da~~~~~---~ed~kR~~s~LI~~f~~mVdfg~~~e 629 (930)
T KOG3682|consen 554 IGYDIQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLC-DAYRLEE---SEDVKRAASQLICSFLSMVDFGTNLE 629 (930)
T ss_pred hcccchhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHH-HHhhhhh---hhhhHHHHHHHHHHHHHHHhhcccHH
Confidence 999776 56999999999985 468999999999999999999 4444433 22444788999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHh----hCCCCHH
Q 005113 499 EMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETL----YGVPAPE 574 (714)
Q Consensus 499 ~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l----~~~~~~~ 574 (714)
+|++||++||..|++..+ .+.+||.+.++||.++.+. + ||...|++.||+.+ +++..|.
T Consensus 630 q~L~f~vecRe~f~~~~~-----~li~LI~S~n~la~~t~K~-----g-------kK~a~Fvr~Cia~~~~TIPSv~~p~ 692 (930)
T KOG3682|consen 630 QCLEFIVECREDFGLRQN-----SLIHLIESLNQLAHRTQKS-----G-------KKKADFVRVCIANLSLTIPSVRDPS 692 (930)
T ss_pred HHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHh-----h-------hhHHHHHHHHHHHhheecccccChh
Confidence 999999999999999876 7899999999999998742 1 56677777777776 3667899
Q ss_pred HHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcc-cCcH--HHHHHHHHHHHHHHhccCCCccc
Q 005113 575 LALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEI-SDSR--AQVTAIHLIIGTLQRMHVFGVEN 638 (714)
Q Consensus 575 ~~lkLyLq~A~~Ad~~~~~~iayeFf~qAf~iyEe~i-~ds~--~Q~~al~~ii~tL~~~~~~~~e~ 638 (714)
.+++|||++||+|...|+-+.+.+|+..|++..+|-. .|.. .-...+...|..+.++-.|-+||
T Consensus 693 ~rlnlyl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 693 RRLNLYLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hHhhhhhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 9999999999999999999999999999999999875 6776 44667777788888877675554
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3e-13 Score=152.37 Aligned_cols=197 Identities=7% Similarity=-0.171 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchhhHHHHHHhcchhhHHHHHHHHHHHH
Q 005113 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (714)
Q Consensus 36 l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~g~~l~dLYE~VQyagnIlPRLYLmItVg~~y 115 (714)
.+.+++++..+..+.++.-+.|+.|++.|+...+|...|..++..+.-++..++++++.+++.+++.|+||..|+.+-.|
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHh
Q 005113 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (714)
Q Consensus 116 i~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~--~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRl 193 (714)
.+.---.......+...||+|++||++|.+.+++..++++.++|..+ +.|+ ..++-.|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~-t~~~e~~p------------------ 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYA-TSENEVLP------------------ 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHH-hccccCCc------------------
Confidence 99988888989999999999999999999999999999998888754 1121 01111111
Q ss_pred hccCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhCCc
Q 005113 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPD 268 (714)
Q Consensus 194 qhqg~~rer~~r~~eR~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~~AQeYLmd~IiQvFPd 268 (714)
+..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 -----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~ 346 (760)
T KOG1107|consen 289 -----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG 346 (760)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC
Confidence 5556688888888888888888888888889999999999999999999999999998
No 5
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.12 E-value=98 Score=37.27 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 005113 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD--RLDYADQVLGACVKKLSGEGKLEDNRATKQIVAL 395 (714)
Q Consensus 318 ~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~--~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~l 395 (714)
+.+..+.|++. ..+-|+...+..++|++-+...-...|.+ +-+|+..+.+.+.+++.+.+...++..+..++++
T Consensus 253 d~stlqlfFdl----y~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRl 328 (1082)
T KOG1410|consen 253 DSSTLQLFFDL----YHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRL 328 (1082)
T ss_pred CchHHHHHHHH----hccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHH
Confidence 56667778774 44555556788899998888877777743 5689999999999999888777778888899999
Q ss_pred HHchhhhcccHHHHHcCCCchHHHhcC
Q 005113 396 LSAPLDKYNDIVTVLKLSNYPSVMEYV 422 (714)
Q Consensus 396 L~~pl~~~~~~~~vl~l~~f~~ll~~l 422 (714)
|-.-=.+| .+-.+.+++.|+..+.+.
T Consensus 329 laRlktNY-QL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 329 LARLKTNY-QLGELVKVECYPEVIRLI 354 (1082)
T ss_pred HHHHHhhh-hhHhhhccCCcHHHHHHH
Confidence 99988888 466778999999887543
No 6
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=61.34 E-value=1.3e+02 Score=32.25 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 005113 332 VIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (714)
Q Consensus 332 l~~~~~~~~~~d~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (714)
-+-..|++++..|+.+.+++-..+..++- .++..+-..++....+ +++.-+.+++++.
T Consensus 192 EiA~D~~L~~~kF~~Lae~lP~~aR~~hD-------~LYrAID~YLk~Hp~l-s~~Er~~lC~~ld 249 (258)
T PF03000_consen 192 EIAPDPNLKPSKFVALAEALPDSARPSHD-------GLYRAIDIYLKAHPGL-SEEERKRLCRLLD 249 (258)
T ss_pred HhcCCCCCCHHHHHHHHHHCCHhhhhccc-------hHHHHHHHHHHHcccC-CHHHHHHHHhhCC
Confidence 34467899999999999999888876544 4444444444333322 4555566776654
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=42.71 E-value=5.8e+02 Score=32.07 Aligned_cols=141 Identities=8% Similarity=0.191 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcc-cHHHHHcCCCchHHHhcC--CchhH-HHHHHHHHHHHHh
Q 005113 365 YADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYN-DIVTVLKLSNYPSVMEYV--DSETN-KVMAMVIIQSIMK 440 (714)
Q Consensus 365 ~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~-~~~~vl~l~~f~~ll~~l--~~~~r-k~va~~Il~~~l~ 440 (714)
+...++...+..+...+...+..-..--..+|+..+++-+ ++-..+-.--|+++.... ..+.- -+.+.+.+.+++.
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 4455555555555444321122333445556665555543 334555566788887655 33333 6788999999886
Q ss_pred cCc-cc---cCHHH--HHHHHHHHHHHHhCCCCCC----------------CCCCCh----------------hhHHHHH
Q 005113 441 NNT-QI---STADK--VGALFELIKGLIRDLDGAA----------------HDQVDE----------------DDFKEEQ 482 (714)
Q Consensus 441 ~~~-~i---~~~~~--v~~ll~~~~~L~~d~~~~~----------------~~~~~~----------------~e~~~eq 482 (714)
... .+ .+..- +.-+|.+...|++...+.. +.+..+ +-..-+|
T Consensus 690 ~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQ 769 (1005)
T KOG2274|consen 690 VTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQ 769 (1005)
T ss_pred cCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 321 01 01111 3356666666663322100 001111 2234489
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHH
Q 005113 483 NSVARLIQMLQNDDTEEMFKIICT 506 (714)
Q Consensus 483 ~lv~r~ihli~~~D~e~q~~~l~~ 506 (714)
++|.-|.|++. .|+++.++||..
T Consensus 770 sLi~VfahL~~-t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 770 SLIMVFAHLVH-TDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHHhh-CCHHHHHHHHHh
Confidence 99999999996 578999999987
No 8
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.73 E-value=7.5e+02 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCC
Q 005113 430 MAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDG 467 (714)
Q Consensus 430 va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~ 467 (714)
.|..-++.+++ +.+++...++..=+.+++.|+..+.|
T Consensus 39 ~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n 75 (608)
T PF10345_consen 39 TAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETEN 75 (608)
T ss_pred HHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 67777777765 66788888888889999999976654
No 9
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.71 E-value=5.2e+02 Score=27.04 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhc-Ccccc
Q 005113 368 QVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKN-NTQIS 446 (714)
Q Consensus 368 ~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~rk~va~~Il~~~l~~-~~~i~ 446 (714)
.++..|.+.+..... +++....++.+|..-+.+++ .+.=.+++..+++.+-.. .....
T Consensus 7 ~v~~~~l~~l~~~~l--~~k~~~dii~~L~~El~~lp-------------------~~~Lv~l~~~~v~~i~~g~~~~~~ 65 (223)
T PF14675_consen 7 KVYKCCLKLLESGDL--SEKQASDIIGRLMLELHSLP-------------------GEHLVELAELCVDSIRSGDNKNGK 65 (223)
T ss_dssp HHHHHHHHHHHHS-----HHHHHHHHHHHHHHGGG---------------------HHHHHHHHHHHHHHHHS---S-ST
T ss_pred HHHHHHHHHcccCCc--CHHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHHHHcCCcccch
Confidence 455666666665442 34555666666655554442 344467788888777432 12233
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHH-----------HHHHHHHHhhhc--CCCHHHHHHHHHHHHHHHhc
Q 005113 447 TADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEE-----------QNSVARLIQMLQ--NDDTEEMFKIICTVRKHILT 513 (714)
Q Consensus 447 ~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~e-----------q~lv~r~ihli~--~~D~e~q~~~l~~~R~~f~~ 513 (714)
..+-+=.++..+..- +......++...+|+... .+.+..++.+++ .=+.+..-.+....-+.+.+
T Consensus 66 ~ldLlP~~Ls~L~~~--~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~ 143 (223)
T PF14675_consen 66 WLDLLPKCLSALSAS--ESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVPLSKEELEFVVEKVLSMLKK 143 (223)
T ss_dssp TTTHHHHHHHHHHT---S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--cccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 333333333332221 111111223334444321 123344555555 34667777777788888888
Q ss_pred CCCccccccchHHHHHHHHHHHH
Q 005113 514 GGPKRLPFTVPPLVFSSLKLVRQ 536 (714)
Q Consensus 514 gg~~ri~~tlp~LV~~~~~L~~~ 536 (714)
.++. -+||||++.+.|+.+
T Consensus 144 l~l~----elPpLvyQLL~Lssk 162 (223)
T PF14675_consen 144 LDLQ----ELPPLVYQLLLLSSK 162 (223)
T ss_dssp S-GG----GHHHHHHHHHHHHTT
T ss_pred CChh----hccHHHHHHHHHhhc
Confidence 8754 799999999999855
No 10
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.98 E-value=1.1e+03 Score=30.11 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcC
Q 005113 477 DFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQG 539 (714)
Q Consensus 477 e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~ 539 (714)
...-.-..+.|-+|++...+...|++.|-.++--+.=.- --.-++-|+|+.+|..+..+-.
T Consensus 797 qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 797 QVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHHHHh
Confidence 333344567899999999999999998887764333211 1122677899999998877654
No 11
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=33.98 E-value=4.3e+02 Score=27.46 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=56.1
Q ss_pred HHhHhHhhCCcchhHHhHHHHHhhcccC--CCC--CCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHH
Q 005113 258 LMDCIIQVFPDEYHLQTLEILLGAFPQL--QPS--VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVI 333 (714)
Q Consensus 258 Lmd~IiQvFPdefHl~TL~~lL~~~~~l--~~~--V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~ 333 (714)
++..+.+.||+.| .+||+++... ..+ +++...+...|+++-.-.. +..+
T Consensus 105 ~~~~v~~~y~~k~-----~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~-------------------~~~s--- 157 (219)
T PF14677_consen 105 ILSTVCQRYPDKF-----SQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELE-------------------NFLS--- 157 (219)
T ss_dssp HHHHHHHTSGGGH-----HHHHHHTS----STTTT-HHHHHHHHHHHHHHHHHH-------------------HHHH---
T ss_pred HHHHHHHHhhHHH-----HHHHHHhccccCCccccccHHHHHHHHHHHHHHHHh-------------------hccc---
Confidence 3455678999887 4688876522 222 3555555555555532111 1110
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 005113 334 EAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (714)
Q Consensus 334 ~~~~~~~~~d~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (714)
.+..+....+++.+++.+-.|+-..-|+. .+.+.++.-+.+.+++.. +.++...+.++++|
T Consensus 158 ~~~e~~~~K~~~~Lv~ils~L~~~l~~~s-~~~~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 158 SEEEDFNSKEAVLLVNILSQLSDHLDPSS-DQFTQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp S--SS--SHHHHHHHHHHHHHTTSS-SSS-SHHHHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 11222334566666666666666666654 455678887777777765 34555556666654
No 12
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=33.46 E-value=3e+02 Score=30.13 Aligned_cols=147 Identities=11% Similarity=0.213 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcC--CCchHHH
Q 005113 343 GAVTLYSSLLTFTLHVHPDRL-DYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKL--SNYPSVM 419 (714)
Q Consensus 343 d~i~l~~sll~~~l~~yp~~~-~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l--~~f~~ll 419 (714)
++++++.++++=.-...++.+ .-++.+++.+.....+.- ...+++...+-++|...+.++- ..++++ +.|..++
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~-~~yPe~r~~ff~LL~~i~~~~f--~~l~~lp~~~f~~~i 167 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF-EEYPEHRVNFFKLLRAINEHCF--PALLQLPPEQFKLVI 167 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS-SSSHHHHHHHHHHHHHHHHHHT--HHHHHS-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-hhChHHHHHHHHHHHHHHHHhH--HHHHcCCHHHHHHHH
Confidence 444444444444333444432 344667777777776543 2357888889999999998873 556666 4477777
Q ss_pred hcCCchhH---HH---HHHHHHHHHHhcCccccCHHHHHHHH-HHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhh
Q 005113 420 EYVDSETN---KV---MAMVIIQSIMKNNTQISTADKVGALF-ELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQML 492 (714)
Q Consensus 420 ~~l~~~~r---k~---va~~Il~~~l~~~~~i~~~~~v~~ll-~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli 492 (714)
+.+-|.-+ ++ .+..++..++++-.. .+++..+.++ .+.-.++++-=...++..-...|.....++++++.++
T Consensus 168 dsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~v 246 (319)
T PF08767_consen 168 DSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLV 246 (319)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence 77755443 33 444455555443111 4555554443 2222222110000111112245666677777777766
Q ss_pred c
Q 005113 493 Q 493 (714)
Q Consensus 493 ~ 493 (714)
.
T Consensus 247 e 247 (319)
T PF08767_consen 247 E 247 (319)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.27 E-value=1.3e+03 Score=29.40 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=37.8
Q ss_pred CccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 005113 442 NTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVR 508 (714)
Q Consensus 442 ~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R 508 (714)
++-.+.|.-...++++|+.++.+.++ .++|+...-.++--++--.+| =++|....+..+-
T Consensus 715 ~~~~s~~~y~~il~~i~~~~l~~e~~------~D~d~~~a~kLle~iiL~~kg-~~dq~iplf~~~a 774 (1010)
T KOG1991|consen 715 PSLLSNPDYLQILLEIIKKVLTSENG------EDSDCESACKLLEVIILNCKG-LLDQYIPLFLELA 774 (1010)
T ss_pred hhhhccchHHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHHHHhcC-cHhhHhHHHHHHH
Confidence 45578888889999999999865432 234444444444444444445 5677666666544
No 14
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=27.90 E-value=64 Score=33.40 Aligned_cols=73 Identities=26% Similarity=0.446 Sum_probs=51.7
Q ss_pred HHHHHHHhHHHHHHHHHHhhhc----C--CCchhhHHHHHHhcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 005113 63 LYMRAFDELRKLEMFFKEETRR----G--CSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (714)
Q Consensus 63 LYm~V~d~L~~L~~yl~~~~~~----g--~~l~dLYE~VQyagnIlPRLYLmItVg~~yi~~~~~p~~eiLkDLvEMcRG 136 (714)
+++..+++|+.|.+||...+.+ | -.++|+ +++||||-+=+++.-|.- -+.|.. -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~-~~IP~~---------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKN-FEIPAS---------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcC-CCCchh---------hhH
Confidence 4578889999999999985432 3 357787 799999999888887753 344543 357
Q ss_pred ccchhHHHHHHHHHHHh
Q 005113 137 IQHPVRGLFLRSYLSQI 153 (714)
Q Consensus 137 VQhPlRGLFLR~YL~q~ 153 (714)
|-.=+.++|.|-=+-+.
T Consensus 186 V~rYl~~~ya~d~F~~t 202 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTNT 202 (221)
T ss_pred HHHHHHHHHhHHHhhcC
Confidence 76677777777554443
No 15
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.73 E-value=1e+03 Score=27.37 Aligned_cols=103 Identities=7% Similarity=0.073 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHH-hcCccccCHHHHHHHHHHHHHHHhCC--CCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 005113 428 KVMAMVIIQSIM-KNNTQISTADKVGALFELIKGLIRDL--DGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (714)
Q Consensus 428 k~va~~Il~~~l-~~~~~i~~~~~v~~ll~~~~~L~~d~--~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l 504 (714)
..+...+++.+. .......++..+-+-..+++-++-.. .+.+. -.+ .-+.++..|...+..+++-..++++
T Consensus 249 ~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-----l~~-~~~~vl~sl~~al~~~~~~v~~eIl 322 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-----LPF-SPSSVLPSLLNALKSNSPRVDYEIL 322 (464)
T ss_pred HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-----ecc-cHHHHHHHHHHHHhCCCCeehHHHH
Confidence 333344444332 22334566666655555555555333 11111 011 1235667777777766667777777
Q ss_pred HHHHHHH-hcCCCccccccchHHHHHHHHHHHH
Q 005113 505 CTVRKHI-LTGGPKRLPFTVPPLVFSSLKLVRQ 536 (714)
Q Consensus 505 ~~~R~~f-~~gg~~ri~~tlp~LV~~~~~L~~~ 536 (714)
..++..+ ++.+..=.......++..+.++...
T Consensus 323 ~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~ 355 (464)
T PF11864_consen 323 LLINRLLDGKYGRELSEEDWDIILDIIEEIFDK 355 (464)
T ss_pred HHHHHHHhHhhhhhhcccCchHHHHHHHHHHhh
Confidence 7777777 5555322344454444444443333
No 16
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=23.79 E-value=2.9e+02 Score=25.06 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCC
Q 005113 126 VLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDI 161 (714)
Q Consensus 126 iLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~ 161 (714)
-|++|.+||..-.++...=.+-.=|+.+.||.+|+-
T Consensus 25 ~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIiPgY 60 (95)
T PF07540_consen 25 SLKRLLKLCESKVDVTVRKLAILSLLAVFKDIIPGY 60 (95)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 499999999998554444446667778889999984
No 17
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.04 E-value=8.8e+02 Score=29.73 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCChhh--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 005113 316 FLQVEAFSKLNNAIGKVIEAQADMPILG--AVTLYSSLLTFTLHVHPDRLDYADQVLGACVK 375 (714)
Q Consensus 316 ~~~~~lf~~f~~~i~~l~~~~~~~~~~d--~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~ 375 (714)
+-+..+|++|.-.++-+.+.. ++.++| -..++...+++++.|-. +++|...-+...+
T Consensus 178 FRD~sL~~vf~laln~L~~~~-~~nlnd~~q~~L~~~vL~L~l~Cl~--FDfiGss~DEsse 236 (1082)
T KOG1410|consen 178 FRDDSLFDVFSLALNLLKDNV-DLNLNDRAQLGLLMQVLKLNLNCLN--FDFIGSSTDESSE 236 (1082)
T ss_pred hhhhHHHHHHHHHHHHHHHhc-ccCcccHhHhhHHHHHHHHHhhhcc--ccccccccccccc
Confidence 336788999988888777654 444544 57788999999999865 5555444433333
No 18
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.35 E-value=1.2e+03 Score=26.73 Aligned_cols=258 Identities=12% Similarity=0.132 Sum_probs=123.0
Q ss_pred CchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHH---------------HH
Q 005113 423 DSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSV---------------AR 487 (714)
Q Consensus 423 ~~~~rk~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv---------------~r 487 (714)
|-..|.+.+..+.+.+-+ .++ +.+..+.+.++-|+.... |. +-....-+++ +.
T Consensus 3 ~l~~R~~a~~~l~~~i~~--~~~---~~i~~iW~~~~DLi~~~~--p~-----e~R~~~~~ll~~~i~~~~~~~~~~R~~ 70 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQK--YPL---SSIEEIWYAAKDLIDPNQ--PS-----EARRAALELLIACIKRQDSSSGLMRAE 70 (464)
T ss_pred CHHHHHHHHHHHHHHHHh--CCc---hHHHHHHHHHhhhcCCCC--CH-----HHHHHHHHHHHHHHHccccccHHHHHH
Confidence 345677888888888743 333 667778888888873321 11 1111111111 23
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHH---HHHHH-------HHHHHhcCC-CC---CCCCC--CCCC
Q 005113 488 LIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPL---VFSSL-------KLVRQLQGP-EE---NPFGE--EGST 551 (714)
Q Consensus 488 ~ihli~~~D~e~q~~~l~~~R~~f~~gg~~ri~~tlp~L---V~~~~-------~L~~~~~~~-~~---~~~~~--~~~~ 551 (714)
|.+.|.....+.-|.....+=.++.++| +.|.+....+ +...+ +.+|..... +. ..... ....
T Consensus 71 fF~~I~~~~~~~d~~~~l~aL~~LT~~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 71 FFRDISDPSNDDDFDLRLEALIALTDNG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhh
Confidence 4455552222223445555566777888 5666533332 22222 122222111 00 00000 0011
Q ss_pred ChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHhc
Q 005113 552 TPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRM 631 (714)
Q Consensus 552 ~~kk~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~~Ad~~~~~~iayeFf~qAf~iyEe~i~ds~~Q~~al~~ii~tL~~~ 631 (714)
....+|+|+..||..-.. ...+..+.-.+..+-.. |...+...+ ++.++.++.--|.=+...-+++..+|.+||++
T Consensus 150 ~l~~ll~~l~nviKfn~~-~l~e~~i~~lv~~i~~i--C~~Ts~~~d-i~~~L~vldaii~y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFN-YLDEDEISSLVDQICTI--CKSTSSEDD-IEACLSVLDAIITYGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred hHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHH--HhccCcHHH-HHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH
Confidence 235788999988887633 11223333333322211 332222222 36666666655554555567788888888887
Q ss_pred cCCC---ccchHHHHHHH----HHHH----Hhcc--Cchhh------HH-HHHHhhhhccCCCCCCc----ccchHHHHH
Q 005113 632 HVFG---VENRDTLTHKA----TGYS----AKLL--KKPDQ------CR-AVYACSHLFWVDDQDNM----KDGERKLCI 687 (714)
Q Consensus 632 ~~~~---~e~y~~L~tk~----~~~a----skLL--kK~dQ------cr-av~~cshL~w~~~~~~~----~d~krVleC 687 (714)
-+.. +..+..++.-| ...+ -.+| ..+.+ +| ||..=..+.|...+..+ ...--|+..
T Consensus 226 ~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~s 305 (464)
T PF11864_consen 226 VNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPS 305 (464)
T ss_pred hcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHH
Confidence 4443 22233333222 1111 1233 22222 33 45555666776521111 122348888
Q ss_pred HhhhC---CcchH
Q 005113 688 VCSNT---WPVQS 697 (714)
Q Consensus 688 Lq~~~---d~~~s 697 (714)
|+++| +++..
T Consensus 306 l~~al~~~~~~v~ 318 (464)
T PF11864_consen 306 LLNALKSNSPRVD 318 (464)
T ss_pred HHHHHhCCCCeeh
Confidence 88887 56666
No 19
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=21.63 E-value=1.4e+02 Score=25.13 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 005113 323 SKLNNAIGKVIEAQ-ADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 371 (714)
Q Consensus 323 ~~f~~~i~~l~~~~-~~~~~~d~i~l~~sll~~~l~~yp~~~~~vd~il~ 371 (714)
+.|++.+.+..+.+ +.+++++.+.+.-|+.- +.+||.+ .+++||.
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~--l~~~p~~--~l~~vf~ 64 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCL--LQRFPED--LLNKVFS 64 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--HhhCCHH--HHHHHcC
Confidence 45666666666655 78899999999888865 5688954 8888875
No 20
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=1.5e+03 Score=27.62 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=52.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCC
Q 005113 282 FPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD 361 (714)
Q Consensus 282 ~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~ 361 (714)
..+-+|+-.|+.=+.+|-+++-.-.- + .-++..+.|.- +- ++|+.=++++.++..+|||+
T Consensus 785 vi~qypgkEVkKglenlYKKveKnL~-------a--eenLLqvvW~~---mq--------eeFi~qy~~f~~lIakcYpg 844 (867)
T KOG2148|consen 785 VIKQYPGKEVKKGLENLYKKVEKNLL-------A--EENLLQVVWHK---MQ--------EEFIDQYESFEQLIAKCYPG 844 (867)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHhhh-------h--hhhHHHHHHHH---HH--------HHHHHHHHHHHHHHHHhcCC
Confidence 33445665566666666666653211 1 34678888873 22 68999999999999999998
Q ss_pred Cc----chHHHHHHHHHHHhc
Q 005113 362 RL----DYADQVLGACVKKLS 378 (714)
Q Consensus 362 ~~----~~vd~il~~~~~~l~ 378 (714)
.- -+++.||.++.++..
T Consensus 845 s~v~le~~iq~iLaffS~IAq 865 (867)
T KOG2148|consen 845 SNVPLEFEIQDILAFFSEIAQ 865 (867)
T ss_pred CCCceeeeHHHHHHHHHHHhh
Confidence 62 256788888776643
No 21
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=1.6e+02 Score=28.84 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhh-cCCCCCchhhHHHHHH----HHhHHHHHHHHHHh
Q 005113 37 RDALKYSAQMLSELR-TSKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (714)
Q Consensus 37 ~~ALkhas~mL~ELR-ts~LsPk~YYeLYm~V----~d~L~~L~~yl~~~ 81 (714)
|+-+.---.+|.+|| ...+.|..|-+||+++ |...++|-+|+.+.
T Consensus 96 i~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 96 IKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 444455556888887 5789999999999997 88888888888774
No 22
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=21.07 E-value=7e+02 Score=26.38 Aligned_cols=168 Identities=18% Similarity=0.312 Sum_probs=83.1
Q ss_pred CCCCChhhhHHHHHHhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhh-hhhHHHHH
Q 005113 167 GDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKET-VLPRVLEQ 245 (714)
Q Consensus 167 ~~~g~v~dsi~Fll~NF~EMNkLWVRlqhqg~~rer~~r~~eR~eL~iLVG~nLvrLSqLegv~~~~Y~~~-iLP~iLeq 245 (714)
|++|.+--+++|+++|+-..+- -.|+.. +.-|+- .-+| .++.|... |+|.|.++
T Consensus 70 GPNGgLv~cmEyl~~NldwL~~------~~Gd~e----------------ddylif--DcPG-QIELytH~pVm~~iv~h 124 (273)
T KOG1534|consen 70 GPNGGLVYCMEYLLENLDWLEE------EIGDVE----------------DDYLIF--DCPG-QIELYTHLPVMPQIVEH 124 (273)
T ss_pred CCCccchhHHHHHHHHHHHHHh------hccCcc----------------CCEEEE--eCCC-eeEEeecChhHHHHHHH
Confidence 5668899999999999985432 223110 011110 0111 24466665 99999999
Q ss_pred HHhcccchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCHHH-------HHHHHHHHHHH---HHhhccCCCch
Q 005113 246 VVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKT-------VLSRLMERLSN---YAASSTEVLPE 315 (714)
Q Consensus 246 Iv~C~D~~AQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v~~-------Il~sLi~RL~~---y~~~~~~~~~~ 315 (714)
+-+=.=...--||+|.=.-|=.--|--..|..+-.-+.-.-|.+|+-+ +-...++||-+ |.--+.+++..
T Consensus 125 l~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~ 204 (273)
T KOG1534|consen 125 LKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL 204 (273)
T ss_pred HhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc
Confidence 887222333367777644332223444455444333334466666432 22234444432 11111111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHHHHHHhcCC
Q 005113 316 FLQVEAFSKLNNAIGKVIEAQA-------DMPILGAVTLYSSLLTFTLHVHPD 361 (714)
Q Consensus 316 ~~~~~lf~~f~~~i~~l~~~~~-------~~~~~d~i~l~~sll~~~l~~yp~ 361 (714)
...=|....+.+..+++..+ +-+-++=+...-+-+..+.+||-+
T Consensus 205 --~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed 255 (273)
T KOG1534|consen 205 --RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGED 255 (273)
T ss_pred --ccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 11226666677777765322 122334455555555666665543
No 23
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=20.90 E-value=63 Score=23.37 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.4
Q ss_pred CCCCCchhhHHHHHHHHhHHH
Q 005113 53 SKLSPQKYYQLYMRAFDELRK 73 (714)
Q Consensus 53 s~LsPk~YYeLYm~V~d~L~~ 73 (714)
+.||+.+|.+|=+-|+||+..
T Consensus 6 ~~Ls~~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 6 ARLSNQRFEELATDVYDELDR 26 (31)
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 458999999999999999864
No 24
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=20.74 E-value=2.8e+02 Score=30.93 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=56.8
Q ss_pred HhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 005113 273 QTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (714)
Q Consensus 273 ~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll 352 (714)
.||.+-|+-+....|.-.|..+|..||.... +..=|..||=+..+|....+ |+++++++++.=+
T Consensus 104 ~tlsECl~Li~eGcp~eei~~~L~~li~~IP--------------~A~K~aKYWIC~Arl~~~~~--~~e~vi~iyEeAi 167 (353)
T PF15297_consen 104 KTLSECLNLIEEGCPKEEILATLSDLIKNIP--------------DAKKLAKYWICLARLEPRTG--PIEDVIAIYEEAI 167 (353)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 4677777777777777778888877777654 23448999999999988655 4589999998655
Q ss_pred HHHHHhcCCCcchHHHHHHHHHH
Q 005113 353 TFTLHVHPDRLDYADQVLGACVK 375 (714)
Q Consensus 353 ~~~l~~yp~~~~~vd~il~~~~~ 375 (714)
..-.. | ++++-.++-+++.
T Consensus 168 ~agAq--P--ieElR~~l~diL~ 186 (353)
T PF15297_consen 168 LAGAQ--P--IEELRHVLVDILK 186 (353)
T ss_pred HcCCC--h--HHHHHHHHHHHHH
Confidence 43332 3 4555554444444
Done!