Query 005113
Match_columns 714
No_of_seqs 139 out of 229
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 15:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w53a_ a.186.1.2 (A:) Phospho 22.5 1.7E+02 0.012 22.8 8.7 54 319-378 25-78 (84)
2 d1ldda_ a.4.5.34 (A:) Anaphase 20.2 43 0.0031 25.8 3.7 31 322-352 6-36 (74)
3 d1jr3a1 a.80.1.1 (A:243-368) g 19.1 62 0.0045 26.2 5.1 31 90-122 92-122 (126)
4 d1hf8a1 a.7.8.2 (A:150-281) Cl 18.2 2.5E+02 0.018 23.3 9.5 78 294-376 21-108 (132)
5 d1w9ca_ a.118.1.19 (A:) Export 15.5 3.6E+02 0.026 25.6 10.6 78 342-422 92-172 (321)
6 d1hx8a1 a.7.8.2 (A:167-299) AP 14.2 3.2E+02 0.023 22.6 8.8 78 294-376 18-105 (133)
7 d1d5ya2 a.4.1.8 (A:57-121) Rob 12.5 52 0.0038 24.1 2.4 22 584-607 18-39 (65)
8 d1bl0a2 a.4.1.8 (A:63-124) Mar 12.4 57 0.0041 23.6 2.6 22 583-606 17-38 (62)
9 d1rqga1 a.27.1.1 (A:397-606) M 9.9 4.9E+02 0.036 22.3 9.6 64 295-358 4-73 (210)
10 d1qqea_ a.118.8.1 (A:) Vesicul 9.5 5.5E+02 0.04 22.5 15.7 140 476-632 31-172 (290)
No 1
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.46 E-value=1.7e+02 Score=22.84 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 005113 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLS 378 (714)
Q Consensus 319 ~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~ 378 (714)
..++ ...++-.++++. +++|+|++++..+.++ ..+|+..+.|..-|....+.+.
T Consensus 25 ~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~ 78 (84)
T d1w53a_ 25 TSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMI 78 (84)
T ss_dssp HHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHH
Confidence 3444 777778888885 8999999999998876 5678766777666666666553
No 2
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.19 E-value=43 Score=25.85 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 005113 322 FSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (714)
Q Consensus 322 f~~f~~~i~~l~~~~~~~~~~d~i~l~~sll 352 (714)
.++||.+|..+....+.+|++.+-.++-.++
T Consensus 6 lq~~w~yI~gMLtN~~slpleRIh~mLkmfv 36 (74)
T d1ldda_ 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKITV 36 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 6789999999998888999999888877553
No 3
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=19.14 E-value=62 Score=26.23 Aligned_cols=31 Identities=13% Similarity=-0.065 Sum_probs=21.3
Q ss_pred hhHHHHHHhcchhhHHHHHHHHHHHHHhcCCCc
Q 005113 90 DLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122 (714)
Q Consensus 90 dLYE~VQyagnIlPRLYLmItVg~~yi~~~~~p 122 (714)
+.++.+.++.| ||+++++++.+.--+.+..|
T Consensus 92 ~~~~~ik~s~~--~r~~~Em~llrll~~~~~~p 122 (126)
T d1jr3a1 92 IGRKELPYAPD--RRMGVEMTLLRALAFHPRMP 122 (126)
T ss_dssp HHHHHTTTSSS--HHHHHHHHHHHHHHTCSSSC
T ss_pred HHHHHHhcCCC--hHHHHHHHHHHHHHcCCCCC
Confidence 33444456666 99999999999555666555
No 4
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.21 E-value=2.5e+02 Score=23.30 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhccCCCch----------hhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCc
Q 005113 294 VLSRLMERLSNYAASSTEVLPE----------FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRL 363 (714)
Q Consensus 294 Il~sLi~RL~~y~~~~~~~~~~----------~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~~~ 363 (714)
.+..+++||..+-....+.-.. .....+|..+.+-+..+++.-.+|+-.|-..-++.+-.|+-+ .
T Consensus 21 ~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al~iykr~~~q-----~ 95 (132)
T d1hf8a1 21 IIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTR-----M 95 (132)
T ss_dssp HHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHCCCCccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----H
Confidence 5667777777654322211000 125778888999999999999999999999999988888876 6
Q ss_pred chHHHHHHHHHHH
Q 005113 364 DYADQVLGACVKK 376 (714)
Q Consensus 364 ~~vd~il~~~~~~ 376 (714)
+.+...++.|-+.
T Consensus 96 e~L~~f~~~ck~~ 108 (132)
T d1hf8a1 96 TRISEFLKVAEQV 108 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8999999988765
No 5
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.52 E-value=3.6e+02 Score=25.56 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCC--CchHH
Q 005113 342 LGAVTLYSSLLTFTLHVHPDRL-DYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLS--NYPSV 418 (714)
Q Consensus 342 ~d~i~l~~sll~~~l~~yp~~~-~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~--~f~~l 418 (714)
-+++.++.++++=.-...++.+ .-.+.+++.+.+-.++.- ...+++...+-++|...+.++- ..+++++ .|..+
T Consensus 92 ~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df-~~yPehR~~ff~LL~~i~~~cf--~~ll~lp~~qf~~v 168 (321)
T d1w9ca_ 92 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDF-EEYPEHRTNFFLLLQAVNSHCF--PAFLAIPPTQFKLV 168 (321)
T ss_dssp THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTT-TCSHHHHHHHHHHHHHHHHHCT--THHHHSCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-hhChHHHHHHHHHHHHHHHHCH--HHHHcCCHHHHHHH
Confidence 3555555555544333334332 234666777777765543 2367888889999999988874 4555553 35555
Q ss_pred HhcC
Q 005113 419 MEYV 422 (714)
Q Consensus 419 l~~l 422 (714)
++.+
T Consensus 169 idsi 172 (321)
T d1w9ca_ 169 LDSI 172 (321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 6
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.23 E-value=3.2e+02 Score=22.63 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhccCCCch----------hhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCc
Q 005113 294 VLSRLMERLSNYAASSTEVLPE----------FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRL 363 (714)
Q Consensus 294 Il~sLi~RL~~y~~~~~~~~~~----------~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~yp~~~ 363 (714)
.+..+++||..+-....+.-.. .....+|..+.+-+..+++.--+|+-.|-..-++.+-+|+-+ .
T Consensus 18 ~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al~iyk~~~~q-----~ 92 (133)
T d1hx8a1 18 VLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVR-----M 92 (133)
T ss_dssp HHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----H
Confidence 5667777777653322211000 125778888999999999988899999998888888888876 6
Q ss_pred chHHHHHHHHHHH
Q 005113 364 DYADQVLGACVKK 376 (714)
Q Consensus 364 ~~vd~il~~~~~~ 376 (714)
+.+...++.|-+.
T Consensus 93 e~L~~f~~~ck~~ 105 (133)
T d1hx8a1 93 DRVGEFLKVAENV 105 (133)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8999999988664
No 7
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=52 Score=24.11 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHhhhCCCccHHHHHHHHHHHhh
Q 005113 584 AEAANDSDLEPVAYEFFTQAYILY 607 (714)
Q Consensus 584 A~~Ad~~~~~~iayeFf~qAf~iy 607 (714)
.++|..+|+.+.++ |+.+|.=+
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~~ 39 (65)
T d1d5ya2 18 LDIALQYRFDSQQT--FTRAFKKQ 39 (65)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHHH
Confidence 58899999999977 88888644
No 8
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=12.42 E-value=57 Score=23.64 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHhhhCCCccHHHHHHHHHHHh
Q 005113 583 CAEAANDSDLEPVAYEFFTQAYIL 606 (714)
Q Consensus 583 ~A~~Ad~~~~~~iayeFf~qAf~i 606 (714)
-+++|..+|+.+.++ |+.+|.=
T Consensus 17 i~~IA~~~Gf~~~~~--F~r~Fk~ 38 (62)
T d1bl0a2 17 ILYLAERYGFESQQT--LTRTFKN 38 (62)
T ss_dssp HHHHHHHTTCSCHHH--HHHHHHH
T ss_pred HHHHHHHHCCCCHHH--HHHHHHH
Confidence 358899999999988 7777754
No 9
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=9.92 E-value=4.9e+02 Score=22.26 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhccC-CCch-----hhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHh
Q 005113 295 LSRLMERLSNYAASSTE-VLPE-----FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHV 358 (714)
Q Consensus 295 l~sLi~RL~~y~~~~~~-~~~~-----~~~~~lf~~f~~~i~~l~~~~~~~~~~d~i~l~~sll~~~l~~ 358 (714)
+.+|+.|-.+|+...-+ .+|+ ..+..+++.+.+.+.++.+.-....+.+.+..+-.++..+-++
T Consensus 4 lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y 73 (210)
T d1rqga1 4 LGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRY 73 (210)
T ss_dssp HHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67888898888775433 3342 2255677777777777766555667778777777777665443
No 10
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.50 E-value=5.5e+02 Score=22.50 Aligned_cols=140 Identities=8% Similarity=-0.010 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChh
Q 005113 476 DDFKEEQNSVARLIQMLQ-NDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPK 554 (714)
Q Consensus 476 ~e~~~eq~lv~r~ihli~-~~D~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~k 554 (714)
..+.+.-+.-.+.-++.. ..+.++-.+.+..+-....+.+. -|........++.-+... + .+.
T Consensus 31 ~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~------~~~~a~~~~~~g~~y~~~-~---------~~~ 94 (290)
T d1qqea_ 31 YKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN------EDEAGNTYVEAYKCFKSG-G---------NSV 94 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHT-T---------CHH
T ss_pred ccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHh-C---------CcH
Confidence 344444444444444455 56777778888877777666653 345556666666555432 1 113
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHh-hhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHhcc
Q 005113 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAA-NDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH 632 (714)
Q Consensus 555 k~f~fv~~~i~~l~~~~~~~~~lkLyLq~A~~A-d~~~~~~iayeFf~qAf~iyEe~i~ds~~Q~~al~~ii~tL~~~~ 632 (714)
.-.++..+.+........+......+...|.+- ...|-.+-|.+++.+|..++++. .+......++..+...+.+..
T Consensus 95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~~~~~g 172 (290)
T d1qqea_ 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADLKALDG 172 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHHHHcC
Confidence 445566666666554456677777777777665 44576677889999999998854 333333444444444444443
Done!