Query 005115
Match_columns 714
No_of_seqs 347 out of 1495
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 18:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 4E-163 8E-168 1361.4 65.3 614 15-708 52-665 (667)
2 KOG2244 Highly conserved prote 100.0 6E-160 1E-164 1277.0 53.4 646 16-707 122-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 1.2E-42 2.6E-47 334.6 10.3 120 13-132 44-163 (163)
4 cd02955 SSP411 TRX domain, SSP 99.9 9.5E-27 2.1E-31 217.1 11.2 103 13-115 22-124 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 1.3E-24 2.9E-29 239.0 26.7 259 209-595 16-275 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 4.5E-22 9.7E-27 219.0 34.1 306 152-596 15-339 (384)
7 PF07221 GlcNAc_2-epim: N-acyl 99.7 5E-17 1.1E-21 177.2 17.4 240 228-592 1-246 (346)
8 PF07221 GlcNAc_2-epim: N-acyl 99.7 3.5E-16 7.5E-21 170.6 14.5 270 202-543 38-330 (346)
9 PF03663 Glyco_hydro_76: Glyco 99.5 1.3E-12 2.8E-17 144.1 22.5 289 155-590 8-315 (370)
10 COG2942 N-acyl-D-glucosamine 2 99.5 2.5E-12 5.5E-17 138.5 20.5 303 216-544 23-359 (388)
11 cd02960 AGR Anterior Gradient 99.4 3.3E-13 7.1E-18 126.6 7.7 65 13-87 30-95 (130)
12 COG1331 Highly conserved prote 99.4 1.4E-11 3.1E-16 140.5 21.7 161 240-524 401-571 (667)
13 cd02958 UAS UAS family; UAS is 99.4 4.4E-13 9.5E-18 123.2 6.5 86 13-110 24-111 (114)
14 PF13899 Thioredoxin_7: Thiore 99.2 6.6E-12 1.4E-16 108.6 5.4 59 13-80 24-82 (82)
15 cd02951 SoxW SoxW family; SoxW 99.2 2.2E-11 4.9E-16 113.3 7.0 84 13-110 21-119 (125)
16 cd02959 ERp19 Endoplasmic reti 99.1 6.5E-11 1.4E-15 109.7 6.3 89 13-111 26-114 (117)
17 PF03663 Glyco_hydro_76: Glyco 99.1 2.4E-09 5.2E-14 118.3 19.5 167 404-594 86-256 (370)
18 cd02953 DsbDgamma DsbD gamma f 99.1 1.1E-10 2.3E-15 105.1 5.1 78 13-94 18-97 (104)
19 smart00594 UAS UAS domain. 99.0 3.4E-10 7.3E-15 105.6 6.0 62 13-82 34-97 (122)
20 cd04791 LanC_SerThrkinase Lant 98.9 2.6E-08 5.7E-13 107.1 18.0 159 408-600 80-238 (321)
21 KOG2244 Highly conserved prote 98.9 7.7E-09 1.7E-13 113.8 13.0 195 203-524 473-679 (786)
22 PF07470 Glyco_hydro_88: Glyco 98.8 3.4E-07 7.4E-12 99.7 21.1 153 415-594 127-287 (336)
23 PF13098 Thioredoxin_2: Thiore 98.8 1.1E-09 2.3E-14 99.6 1.1 87 13-106 12-112 (112)
24 COG2143 Thioredoxin-related pr 98.7 4.7E-08 1E-12 92.8 9.0 98 14-118 50-157 (182)
25 PRK00293 dipZ thiol:disulfide 98.7 2.8E-08 6E-13 115.6 6.9 87 12-109 480-569 (571)
26 COG2942 N-acyl-D-glucosamine 2 98.5 8.7E-06 1.9E-10 88.6 21.2 152 412-590 116-271 (388)
27 cd02950 TxlA TRX-like protein 98.4 2.8E-07 6E-12 88.4 5.4 70 12-92 26-98 (142)
28 cd02949 TRX_NTR TRX domain, no 98.4 2.7E-07 5.8E-12 82.1 4.3 70 12-93 19-89 (97)
29 cd02991 UAS_ETEA UAS family, E 98.4 5.6E-07 1.2E-11 83.4 5.6 80 16-111 31-114 (116)
30 cd02956 ybbN ybbN protein fami 98.3 9.7E-07 2.1E-11 77.9 4.9 63 12-86 18-80 (96)
31 cd04791 LanC_SerThrkinase Lant 98.3 8E-05 1.7E-09 80.1 20.6 134 415-593 142-275 (321)
32 cd02954 DIM1 Dim1 family; Dim1 98.2 1.9E-06 4.1E-11 79.4 6.4 63 13-87 21-83 (114)
33 PF07944 DUF1680: Putative gly 98.2 0.00023 5E-09 82.4 23.7 243 202-589 78-332 (520)
34 PRK10996 thioredoxin 2; Provis 98.1 4.1E-06 8.8E-11 80.0 5.7 64 12-87 58-121 (139)
35 cd02984 TRX_PICOT TRX domain, 98.1 4.1E-06 8.8E-11 73.9 4.6 63 13-87 21-83 (97)
36 COG4225 Predicted unsaturated 98.1 0.00072 1.6E-08 72.4 22.1 257 174-598 33-307 (357)
37 PF07470 Glyco_hydro_88: Glyco 97.9 0.00067 1.4E-08 74.0 19.4 149 422-597 77-226 (336)
38 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 1.3E-05 2.7E-10 71.7 4.8 61 13-85 25-85 (101)
39 PLN00410 U5 snRNP protein, DIM 97.9 1.7E-05 3.7E-10 75.9 5.7 66 12-89 29-96 (142)
40 TIGR01068 thioredoxin thioredo 97.9 2.3E-05 5.1E-10 68.8 6.2 63 12-86 20-82 (101)
41 COG4232 Thiol:disulfide interc 97.9 1.6E-05 3.6E-10 90.4 6.4 70 12-87 480-550 (569)
42 cd03000 PDI_a_TMX3 PDIa family 97.9 1.6E-05 3.5E-10 71.5 4.7 60 13-84 22-84 (104)
43 cd02963 TRX_DnaJ TRX domain, D 97.8 1.4E-05 3.1E-10 73.1 4.0 63 13-87 31-94 (111)
44 PHA02125 thioredoxin-like prot 97.8 2.8E-05 6E-10 66.1 5.3 53 13-86 5-57 (75)
45 cd02994 PDI_a_TMX PDIa family, 97.8 2E-05 4.3E-10 70.2 4.5 61 12-84 22-83 (101)
46 PTZ00443 Thioredoxin domain-co 97.8 7.9E-05 1.7E-09 76.8 9.3 61 13-85 59-119 (224)
47 TIGR01126 pdi_dom protein disu 97.8 3.5E-05 7.6E-10 68.0 5.8 61 13-84 20-82 (102)
48 TIGR00411 redox_disulf_1 small 97.8 2.3E-05 4.9E-10 66.8 4.4 60 12-85 5-64 (82)
49 cd02962 TMX2 TMX2 family; comp 97.8 1.9E-05 4E-10 76.7 4.2 71 12-88 53-124 (152)
50 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 3.7E-05 8E-10 68.9 5.6 63 12-85 25-87 (104)
51 cd02961 PDI_a_family Protein D 97.8 4.4E-05 9.6E-10 66.5 5.7 62 13-85 22-85 (101)
52 cd02948 TRX_NDPK TRX domain, T 97.7 3.7E-05 8E-10 69.2 5.0 63 12-87 23-86 (102)
53 cd02997 PDI_a_PDIR PDIa family 97.7 4.4E-05 9.6E-10 67.8 5.1 62 12-85 23-88 (104)
54 KOG0910 Thioredoxin-like prote 97.7 4E-05 8.6E-10 73.4 4.9 68 12-94 67-138 (150)
55 cd03005 PDI_a_ERp46 PDIa famil 97.7 3.9E-05 8.5E-10 68.0 4.5 62 12-85 22-86 (102)
56 cd02996 PDI_a_ERp44 PDIa famil 97.7 5.9E-05 1.3E-09 68.2 5.7 61 12-84 24-90 (108)
57 cd02985 TRX_CDSP32 TRX family, 97.7 5.9E-05 1.3E-09 68.0 5.2 63 12-87 21-86 (103)
58 cd03002 PDI_a_MPD1_like PDI fa 97.7 0.00011 2.3E-09 66.2 6.9 60 12-82 24-85 (109)
59 cd02973 TRX_GRX_like Thioredox 97.7 5.5E-05 1.2E-09 62.3 4.6 61 13-88 6-66 (67)
60 cd02986 DLP Dim1 family, Dim1- 97.7 6.9E-05 1.5E-09 69.0 5.6 60 13-85 21-81 (114)
61 cd03006 PDI_a_EFP1_N PDIa fami 97.7 4.2E-05 9E-10 70.6 4.2 60 12-83 35-95 (113)
62 PRK09381 trxA thioredoxin; Pro 97.6 6.6E-05 1.4E-09 67.9 5.1 64 12-87 27-90 (109)
63 PF06662 C5-epim_C: D-glucuron 97.6 0.0023 5E-08 64.2 16.1 144 414-586 32-186 (189)
64 PHA02278 thioredoxin-like prot 97.6 6.6E-05 1.4E-09 68.1 4.6 63 13-87 21-87 (103)
65 cd04792 LanM-like LanM-like pr 97.6 0.0062 1.3E-07 74.5 22.8 251 234-591 476-734 (825)
66 cd04434 LanC_like LanC-like pr 97.6 0.019 4.1E-07 61.7 23.5 159 410-596 98-256 (343)
67 cd02993 PDI_a_APS_reductase PD 97.5 0.00016 3.4E-09 65.8 6.0 61 13-84 28-91 (109)
68 cd02975 PfPDO_like_N Pyrococcu 97.5 0.00011 2.5E-09 67.5 4.9 80 13-111 29-111 (113)
69 cd02947 TRX_family TRX family; 97.5 0.00011 2.4E-09 62.5 4.5 61 13-86 17-77 (93)
70 TIGR00412 redox_disulf_2 small 97.5 9.9E-05 2.1E-09 63.0 3.9 64 12-93 4-67 (76)
71 cd02995 PDI_a_PDI_a'_C PDIa fa 97.5 0.00019 4.1E-09 63.6 5.9 58 13-82 25-84 (104)
72 cd03065 PDI_b_Calsequestrin_N 97.5 0.00014 3E-09 67.9 5.1 69 13-93 34-108 (120)
73 cd03001 PDI_a_P5 PDIa family, 97.5 0.00018 3.9E-09 63.8 5.6 59 12-81 24-82 (103)
74 cd02999 PDI_a_ERp44_like PDIa 97.5 0.0001 2.2E-09 66.3 3.9 58 12-81 24-82 (100)
75 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.00018 3.9E-09 63.8 5.3 62 12-84 24-88 (105)
76 PF07944 DUF1680: Putative gly 97.4 0.0024 5.2E-08 74.1 14.5 134 415-591 63-207 (520)
77 COG3533 Uncharacterized protei 97.4 0.018 4E-07 64.5 20.3 174 202-523 84-263 (589)
78 TIGR01295 PedC_BrcD bacterioci 97.3 0.00036 7.8E-09 65.2 5.9 71 13-87 30-105 (122)
79 PF00085 Thioredoxin: Thioredo 97.3 0.00025 5.4E-09 62.5 4.3 61 13-85 24-84 (103)
80 cd04793 LanC LanC is the cycla 97.3 0.046 1E-06 60.7 23.2 143 417-597 177-331 (382)
81 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.00024 5.2E-09 62.7 3.8 62 12-88 18-79 (89)
82 TIGR00385 dsbE periplasmic pro 97.3 0.00064 1.4E-08 67.1 7.1 69 13-87 70-153 (173)
83 PTZ00051 thioredoxin; Provisio 97.2 0.00035 7.6E-09 61.6 4.3 63 12-87 24-86 (98)
84 TIGR02738 TrbB type-F conjugat 97.2 0.00055 1.2E-08 66.6 5.6 72 12-86 56-133 (153)
85 cd02992 PDI_a_QSOX PDIa family 97.2 0.00044 9.5E-09 63.7 4.6 63 13-86 26-93 (114)
86 PF06662 C5-epim_C: D-glucuron 97.2 0.012 2.6E-07 59.1 14.8 44 248-293 30-73 (189)
87 cd03009 TryX_like_TryX_NRX Try 97.2 0.00037 8.1E-09 65.1 3.9 71 13-87 25-115 (131)
88 PLN02340 endoglucanase 97.1 0.012 2.6E-07 69.0 16.9 187 224-518 73-266 (614)
89 cd02989 Phd_like_TxnDC9 Phosdu 97.1 0.00056 1.2E-08 62.9 4.8 62 13-87 29-90 (113)
90 COG3118 Thioredoxin domain-con 97.1 0.0013 2.9E-08 69.5 7.8 82 13-112 50-132 (304)
91 COG4225 Predicted unsaturated 97.1 0.012 2.7E-07 63.2 14.6 151 447-606 98-252 (357)
92 PF00759 Glyco_hydro_9: Glycos 97.0 0.0022 4.8E-08 72.7 9.6 91 412-520 154-247 (444)
93 PLN02171 endoglucanase 97.0 0.024 5.3E-07 66.6 17.8 86 415-519 179-268 (629)
94 PRK15412 thiol:disulfide inter 97.0 0.0015 3.2E-08 65.4 6.8 69 13-87 75-158 (185)
95 cd02965 HyaE HyaE family; HyaE 97.0 0.00075 1.6E-08 62.0 4.1 63 13-87 34-98 (111)
96 PRK14018 trifunctional thiored 97.0 0.00094 2E-08 76.7 5.6 27 67-93 135-162 (521)
97 KOG0907 Thioredoxin [Posttrans 97.0 0.00058 1.2E-08 62.4 3.1 60 13-85 28-87 (106)
98 cd03011 TlpA_like_ScsD_MtbDsbE 97.0 0.00064 1.4E-08 62.5 3.5 72 13-93 27-115 (123)
99 cd02957 Phd_like Phosducin (Ph 96.9 0.0011 2.4E-08 60.7 4.7 61 13-87 31-91 (113)
100 cd02889 SQCY Squalene cyclase 96.9 0.052 1.1E-06 59.1 18.6 122 155-293 3-138 (348)
101 PLN02420 endoglucanase 96.9 0.029 6.3E-07 64.7 17.1 189 224-517 84-277 (525)
102 PLN02266 endoglucanase 96.9 0.034 7.3E-07 64.0 17.4 67 224-295 89-157 (510)
103 PLN03009 cellulase 96.9 0.024 5.2E-07 65.1 16.4 65 224-294 71-139 (495)
104 PTZ00102 disulphide isomerase; 96.9 0.00072 1.6E-08 76.9 4.0 61 13-84 382-444 (477)
105 PLN02308 endoglucanase 96.8 0.039 8.4E-07 63.3 17.0 67 224-295 71-139 (492)
106 PLN02345 endoglucanase 96.8 0.024 5.2E-07 64.6 15.2 82 415-514 145-228 (469)
107 PLN02909 Endoglucanase 96.8 0.094 2E-06 60.1 19.7 181 224-515 77-264 (486)
108 TIGR02187 GlrX_arch Glutaredox 96.8 0.0019 4.2E-08 66.1 5.6 60 13-85 140-199 (215)
109 COG3533 Uncharacterized protei 96.8 0.087 1.9E-06 59.4 18.6 125 415-593 134-262 (589)
110 PTZ00102 disulphide isomerase; 96.8 0.0011 2.4E-08 75.4 4.3 59 13-82 56-117 (477)
111 PF06917 Pectate_lyase_2: Peri 96.7 0.43 9.3E-06 53.9 23.7 129 447-594 327-472 (557)
112 TIGR02187 GlrX_arch Glutaredox 96.7 0.0017 3.6E-08 66.6 4.9 59 15-85 31-90 (215)
113 PTZ00470 glycoside hydrolase f 96.7 0.14 3.1E-06 59.2 20.5 291 237-605 148-466 (522)
114 PLN00119 endoglucanase 96.7 0.037 8E-07 63.3 15.6 84 415-515 180-264 (489)
115 cd03010 TlpA_like_DsbE TlpA-li 96.7 0.0027 5.8E-08 58.9 5.2 25 68-92 97-122 (127)
116 cd02982 PDI_b'_family Protein 96.6 0.0022 4.8E-08 56.9 4.4 61 13-84 19-82 (103)
117 PLN02309 5'-adenylylsulfate re 96.6 0.0039 8.5E-08 70.7 7.2 60 12-82 371-433 (457)
118 TIGR01130 ER_PDI_fam protein d 96.6 0.0018 4E-08 72.9 4.7 60 13-84 25-87 (462)
119 cd04794 euk_LANCL eukaryotic L 96.6 0.2 4.4E-06 54.8 20.3 137 417-596 170-307 (343)
120 KOG2787 Lanthionine synthetase 96.6 0.0092 2E-07 63.4 9.1 77 417-523 285-361 (403)
121 cd04792 LanM-like LanM-like pr 96.6 1 2.2E-05 55.3 28.3 138 415-597 646-785 (825)
122 PLN02613 endoglucanase 96.6 0.03 6.5E-07 64.2 13.8 181 224-515 69-256 (498)
123 cd02987 Phd_like_Phd Phosducin 96.5 0.0038 8.2E-08 62.1 5.7 60 13-86 90-149 (175)
124 COG4403 LcnDR2 Lantibiotic mod 96.5 0.23 5E-06 59.5 20.8 221 202-526 595-831 (963)
125 cd02967 mauD Methylamine utili 96.5 0.0066 1.4E-07 54.9 6.5 72 13-88 28-112 (114)
126 TIGR00424 APS_reduc 5'-adenyly 96.5 0.0031 6.7E-08 71.6 5.1 60 12-82 377-439 (463)
127 TIGR01577 oligosac_amyl oligos 96.5 2.5 5.4E-05 50.3 29.6 116 152-284 257-393 (616)
128 cd02952 TRP14_like Human TRX-r 96.4 0.0033 7.2E-08 58.6 4.1 59 15-85 37-103 (119)
129 cd03008 TryX_like_RdCVF Trypar 96.4 0.0034 7.4E-08 60.6 3.9 69 13-87 32-128 (146)
130 cd04434 LanC_like LanC-like pr 96.2 2.2 4.7E-05 45.7 26.7 134 417-592 164-299 (343)
131 PRK03147 thiol-disulfide oxido 96.2 0.0042 9.1E-08 60.6 4.0 21 67-87 134-154 (173)
132 TIGR02740 TraF-like TraF-like 96.2 0.0057 1.2E-07 65.0 5.2 71 11-85 171-243 (271)
133 cd01659 TRX_superfamily Thiore 96.2 0.0049 1.1E-07 47.5 3.5 60 13-81 4-63 (69)
134 cd02966 TlpA_like_family TlpA- 96.2 0.0084 1.8E-07 52.9 5.4 71 13-87 26-113 (116)
135 TIGR02180 GRX_euk Glutaredoxin 96.1 0.014 3E-07 49.7 5.9 64 13-87 4-67 (84)
136 PTZ00470 glycoside hydrolase f 96.0 0.038 8.2E-07 63.9 10.9 101 488-593 155-256 (522)
137 cd02964 TryX_like_family Trypa 96.0 0.017 3.7E-07 54.2 6.7 73 12-87 23-115 (132)
138 PRK13728 conjugal transfer pro 95.6 0.017 3.7E-07 57.7 5.2 67 13-85 76-150 (181)
139 PRK11509 hydrogenase-1 operon 95.6 0.017 3.6E-07 54.8 4.6 52 32-92 59-112 (132)
140 cd03419 GRX_GRXh_1_2_like Glut 95.5 0.037 8.1E-07 47.0 6.5 60 13-85 5-64 (82)
141 PLN02175 endoglucanase 95.5 0.3 6.6E-06 55.9 15.4 83 415-515 172-258 (484)
142 cd04794 euk_LANCL eukaryotic L 95.4 0.28 6.2E-06 53.7 14.4 79 417-525 229-307 (343)
143 cd02896 complement_C3_C4_C5 Pr 95.4 1.9 4.1E-05 46.4 20.4 77 203-293 48-124 (297)
144 PF05147 LANC_like: Lanthionin 95.4 0.012 2.5E-07 64.0 3.4 249 247-593 7-262 (355)
145 TIGR01130 ER_PDI_fam protein d 95.3 0.036 7.8E-07 62.4 7.1 58 13-83 371-431 (462)
146 PF13905 Thioredoxin_8: Thiore 95.2 0.037 8.1E-07 48.4 5.6 69 13-84 8-95 (95)
147 cd02892 SQCY_1 Squalene cyclas 95.2 8.2 0.00018 46.1 26.7 60 226-293 359-421 (634)
148 KOG0908 Thioredoxin-like prote 95.1 0.016 3.5E-07 59.8 3.3 61 12-85 27-87 (288)
149 TIGR02200 GlrX_actino Glutared 95.1 0.032 7E-07 46.5 4.6 60 13-87 5-65 (77)
150 cd03012 TlpA_like_DipZ_like Tl 95.1 0.021 4.5E-07 53.1 3.7 21 67-87 101-121 (126)
151 PF01532 Glyco_hydro_47: Glyco 95.0 0.17 3.6E-06 57.9 11.4 165 410-600 75-252 (452)
152 TIGR02661 MauD methylamine deh 94.9 0.04 8.7E-07 55.3 5.5 70 13-88 81-163 (189)
153 PLN02919 haloacid dehalogenase 94.9 0.036 7.9E-07 69.5 6.1 73 12-87 426-518 (1057)
154 KOG0191 Thioredoxin/protein di 94.8 0.025 5.3E-07 63.1 4.1 63 12-85 53-115 (383)
155 TIGR02196 GlrX_YruB Glutaredox 94.7 0.074 1.6E-06 43.4 5.7 58 13-86 5-62 (74)
156 TIGR02189 GlrX-like_plant Glut 94.6 0.055 1.2E-06 48.7 5.1 59 14-85 14-72 (99)
157 cd04793 LanC LanC is the cycla 94.5 1.9 4.1E-05 47.8 18.1 84 415-525 247-330 (382)
158 PF01532 Glyco_hydro_47: Glyco 94.5 0.37 8.1E-06 55.0 12.6 232 239-601 72-321 (452)
159 TIGR01507 hopene_cyclase squal 94.4 13 0.00028 44.5 25.6 60 226-293 365-424 (635)
160 KOG4277 Uncharacterized conser 94.3 0.023 5E-07 59.8 2.1 66 12-88 49-117 (468)
161 PF14595 Thioredoxin_9: Thiore 94.3 0.018 3.8E-07 54.5 1.1 66 14-92 49-116 (129)
162 COG4833 Predicted glycosyl hyd 94.2 0.44 9.4E-06 50.0 11.0 156 395-574 110-283 (377)
163 KOG1752 Glutaredoxin and relat 94.2 0.06 1.3E-06 49.0 4.3 59 14-85 20-78 (104)
164 KOG0190 Protein disulfide isom 94.2 0.023 5E-07 64.6 2.0 61 12-84 48-111 (493)
165 cd02892 SQCY_1 Squalene cyclas 94.1 7 0.00015 46.7 22.6 114 149-289 234-348 (634)
166 TIGR01626 ytfJ_HI0045 conserve 93.8 0.15 3.2E-06 51.2 6.6 74 14-93 67-169 (184)
167 cd02976 NrdH NrdH-redoxin (Nrd 93.7 0.15 3.2E-06 41.6 5.5 59 13-87 5-63 (73)
168 PF06917 Pectate_lyase_2: Peri 93.5 0.21 4.5E-06 56.3 7.6 271 211-536 159-482 (557)
169 TIGR00365 monothiol glutaredox 93.3 0.16 3.5E-06 45.5 5.4 57 13-85 22-78 (97)
170 PF00462 Glutaredoxin: Glutare 93.2 0.18 4E-06 40.4 5.2 50 14-77 5-55 (60)
171 cd02066 GRX_family Glutaredoxi 93.2 0.17 3.6E-06 41.0 5.0 59 13-87 5-63 (72)
172 KOG0190 Protein disulfide isom 93.0 0.081 1.8E-06 60.3 3.6 60 13-85 391-454 (493)
173 TIGR01577 oligosac_amyl oligos 92.7 2.6 5.5E-05 50.2 15.9 133 450-594 313-456 (616)
174 cd03027 GRX_DEP Glutaredoxin ( 92.6 0.2 4.4E-06 41.9 4.7 57 13-85 6-62 (73)
175 PRK10638 glutaredoxin 3; Provi 92.5 0.2 4.4E-06 43.1 4.7 56 14-85 8-63 (83)
176 PHA03050 glutaredoxin; Provisi 92.3 0.26 5.7E-06 45.1 5.4 56 13-85 18-80 (108)
177 PTZ00062 glutaredoxin; Provisi 92.2 0.16 3.5E-06 51.8 4.3 54 13-87 24-77 (204)
178 cd03007 PDI_a_ERp29_N PDIa fam 92.2 0.15 3.2E-06 47.4 3.7 53 13-80 25-89 (116)
179 PRK11200 grxA glutaredoxin 1; 92.1 0.28 6E-06 42.4 5.1 56 13-85 6-69 (85)
180 TIGR02183 GRXA Glutaredoxin, G 92.1 0.22 4.9E-06 43.3 4.5 62 13-85 5-68 (86)
181 cd02969 PRX_like1 Peroxiredoxi 92.1 0.45 9.9E-06 46.5 7.3 74 13-89 32-127 (171)
182 TIGR02190 GlrX-dom Glutaredoxi 92.1 0.23 5E-06 42.4 4.5 57 13-86 13-69 (79)
183 cd03017 PRX_BCP Peroxiredoxin 92.1 0.24 5.2E-06 46.3 5.0 15 73-87 111-125 (140)
184 TIGR02194 GlrX_NrdH Glutaredox 91.7 0.35 7.5E-06 40.4 5.1 49 14-77 5-54 (72)
185 TIGR02181 GRX_bact Glutaredoxi 91.6 0.25 5.4E-06 41.9 4.2 56 14-85 5-60 (79)
186 PF08534 Redoxin: Redoxin; In 91.4 0.3 6.6E-06 46.1 5.0 72 13-88 35-131 (146)
187 KOG2204 Mannosyl-oligosacchari 91.0 2 4.4E-05 49.2 11.6 96 488-593 262-364 (625)
188 KOG2204 Mannosyl-oligosacchari 90.9 6.3 0.00014 45.4 15.3 284 249-605 263-572 (625)
189 PLN02171 endoglucanase 90.6 17 0.00037 43.4 19.3 112 167-282 74-216 (629)
190 PLN02993 lupeol synthase 90.4 3 6.6E-05 50.5 13.1 83 204-293 513-611 (763)
191 TIGR01535 glucan_glucosid gluc 90.4 28 0.00061 41.7 21.0 126 449-592 312-443 (648)
192 cd03028 GRX_PICOT_like Glutare 90.3 0.64 1.4E-05 40.8 5.7 56 13-85 18-74 (90)
193 cd02889 SQCY Squalene cyclase 90.3 8.6 0.00019 41.8 15.8 142 448-595 43-204 (348)
194 TIGR03463 osq_cycl 2,3-oxidosq 90.2 49 0.0011 39.7 26.6 61 225-293 357-421 (634)
195 PF06202 GDE_C: Amylo-alpha-1, 90.1 27 0.0006 38.8 19.7 237 183-498 90-369 (370)
196 cd02988 Phd_like_VIAF Phosduci 90.0 0.3 6.5E-06 49.3 3.7 60 12-87 108-167 (192)
197 PRK10329 glutaredoxin-like pro 89.9 0.55 1.2E-05 40.6 4.8 50 14-77 7-56 (81)
198 KOG0191 Thioredoxin/protein di 89.8 0.35 7.6E-06 53.9 4.5 60 13-83 169-230 (383)
199 PF13192 Thioredoxin_3: Thiore 89.8 0.3 6.5E-06 41.4 3.1 58 14-89 6-64 (76)
200 cd03029 GRX_hybridPRX5 Glutare 89.5 0.63 1.4E-05 38.7 4.8 55 14-85 7-61 (72)
201 PRK12759 bifunctional gluaredo 89.5 0.42 9E-06 54.0 4.7 60 13-85 7-71 (410)
202 COG4403 LcnDR2 Lantibiotic mod 89.4 13 0.00028 45.3 16.8 147 408-607 690-838 (963)
203 PLN02399 phospholipid hydroper 89.3 1.1 2.4E-05 46.8 7.4 16 72-87 201-216 (236)
204 PRK11657 dsbG disulfide isomer 89.0 0.77 1.7E-05 48.4 6.1 28 67-94 215-242 (251)
205 cd00688 ISOPREN_C2_like This g 89.0 30 0.00064 35.5 21.3 128 149-291 50-179 (300)
206 PF05147 LANC_like: Lanthionin 88.9 1.8 4E-05 46.8 9.1 135 415-592 170-307 (355)
207 TIGR02474 pec_lyase pectate ly 88.8 0.53 1.1E-05 50.4 4.6 40 252-292 48-87 (290)
208 PRK09437 bcp thioredoxin-depen 88.6 1.4 3E-05 42.2 7.1 21 73-93 121-142 (154)
209 PRK10877 protein disulfide iso 88.2 1.4 3E-05 45.9 7.2 30 68-107 199-228 (232)
210 PLN02340 endoglucanase 88.2 62 0.0013 38.6 21.5 110 167-282 74-216 (614)
211 TIGR03143 AhpF_homolog putativ 88.0 0.45 9.9E-06 55.7 3.9 64 11-89 481-544 (555)
212 cd03418 GRX_GRXb_1_3_like Glut 87.9 1.3 2.9E-05 36.7 5.7 56 14-85 6-62 (75)
213 TIGR01507 hopene_cyclase squal 87.9 34 0.00075 41.0 19.5 126 151-293 336-492 (635)
214 TIGR01787 squalene_cyclas squa 87.3 64 0.0014 38.6 21.3 28 265-293 382-409 (621)
215 PF06202 GDE_C: Amylo-alpha-1, 87.3 17 0.00036 40.6 15.5 141 451-595 50-209 (370)
216 PF07678 A2M_comp: A-macroglob 87.1 21 0.00045 37.3 15.3 61 222-292 9-69 (246)
217 PRK11097 endo-1,4-D-glucanase; 86.9 9.4 0.0002 42.6 13.1 131 454-593 74-213 (376)
218 KOG2501 Thioredoxin, nucleored 86.4 1.3 2.9E-05 43.2 5.4 72 13-87 40-131 (157)
219 KOG2429 Glycosyl hydrolase, fa 86.0 11 0.00023 43.6 12.9 35 492-526 375-409 (622)
220 COG0695 GrxC Glutaredoxin and 86.0 1.4 3.1E-05 37.9 5.0 58 14-85 7-64 (80)
221 PRK15317 alkyl hydroperoxide r 86.0 0.72 1.6E-05 53.5 4.0 63 11-88 121-183 (517)
222 KOG2431 1, 2-alpha-mannosidase 85.9 5 0.00011 44.7 10.0 123 452-594 151-276 (546)
223 PTZ00062 glutaredoxin; Provisi 85.8 1.2 2.6E-05 45.5 5.1 57 12-85 122-179 (204)
224 KOG2507 Ubiquitin regulatory p 85.8 1.6 3.4E-05 48.6 6.1 79 21-115 33-113 (506)
225 TIGR02540 gpx7 putative glutat 85.8 2.3 5E-05 40.8 6.9 19 69-87 113-135 (153)
226 COG4833 Predicted glycosyl hyd 85.5 1.7 3.6E-05 45.8 5.9 88 413-532 47-136 (377)
227 PF05592 Bac_rhamnosid: Bacter 85.4 6.1 0.00013 45.7 11.3 114 407-532 199-326 (509)
228 TIGR01535 glucan_glucosid gluc 84.7 80 0.0017 38.0 20.1 119 150-284 250-386 (648)
229 PTZ00256 glutathione peroxidas 84.2 2.1 4.5E-05 42.6 5.9 19 69-87 142-163 (183)
230 PRK10137 alpha-glucosidase; Pr 83.8 81 0.0018 38.7 19.8 46 491-536 582-634 (786)
231 cd00688 ISOPREN_C2_like This g 83.3 57 0.0012 33.3 21.8 77 204-293 49-125 (300)
232 PF09492 Pec_lyase: Pectic aci 83.2 1.3 2.9E-05 47.4 4.2 47 245-292 33-82 (289)
233 PTZ00056 glutathione peroxidas 82.6 4.3 9.3E-05 41.2 7.5 13 74-86 147-159 (199)
234 PLN03012 Camelliol C synthase 82.1 1.1E+02 0.0024 37.5 20.0 60 226-293 470-534 (759)
235 PRK10824 glutaredoxin-4; Provi 81.6 2.1 4.6E-05 39.7 4.4 58 12-85 24-81 (115)
236 TIGR01787 squalene_cyclas squa 80.8 11 0.00023 45.1 11.0 118 149-292 386-529 (621)
237 cd02894 GGTase-II Geranylgeran 79.8 90 0.002 33.3 20.3 69 453-536 198-268 (287)
238 TIGR01561 gde_arch glycogen de 79.8 41 0.0009 39.8 15.2 112 412-536 348-480 (575)
239 PLN03012 Camelliol C synthase 79.5 10 0.00023 46.0 10.3 65 451-517 639-710 (759)
240 cd03015 PRX_Typ2cys Peroxiredo 79.4 6.6 0.00014 38.5 7.4 18 71-88 119-136 (173)
241 KOG0366 Protein geranylgeranyl 79.2 81 0.0018 33.5 15.2 71 455-538 214-284 (329)
242 TIGR03463 osq_cycl 2,3-oxidosq 79.1 31 0.00068 41.3 14.2 157 415-594 310-489 (634)
243 COG0526 TrxA Thiol-disulfide i 78.2 3.9 8.4E-05 35.0 4.8 51 14-76 40-94 (127)
244 TIGR03137 AhpC peroxiredoxin. 78.1 4.2 9.1E-05 40.7 5.6 34 71-109 118-152 (187)
245 TIGR02474 pec_lyase pectate ly 78.1 92 0.002 33.7 15.9 90 394-505 30-122 (290)
246 PLN02412 probable glutathione 77.3 2.9 6.4E-05 41.0 4.2 18 70-87 129-146 (167)
247 PRK00522 tpx lipid hydroperoxi 76.6 5.3 0.00012 39.1 5.8 34 74-110 133-166 (167)
248 TIGR03140 AhpF alkyl hydropero 75.1 3 6.4E-05 48.5 4.1 63 11-88 122-184 (515)
249 cd02890 PTase Protein prenyltr 74.7 39 0.00085 35.8 12.3 122 149-293 45-167 (286)
250 PF13728 TraF: F plasmid trans 74.6 5.3 0.00011 41.1 5.3 60 12-85 126-197 (215)
251 PRK13190 putative peroxiredoxi 74.2 5.7 0.00012 40.3 5.4 37 71-111 116-152 (202)
252 PRK13599 putative peroxiredoxi 73.2 5.5 0.00012 41.0 5.1 37 71-111 118-154 (215)
253 cd02968 SCO SCO (an acronym fo 72.2 7.6 0.00016 36.1 5.5 15 13-27 29-44 (142)
254 cd00340 GSH_Peroxidase Glutath 71.3 4.4 9.5E-05 38.8 3.7 14 74-87 125-138 (152)
255 cd03018 PRX_AhpE_like Peroxire 71.0 7.3 0.00016 36.6 5.1 15 73-87 115-129 (149)
256 PF05592 Bac_rhamnosid: Bacter 70.3 1E+02 0.0022 35.6 15.3 195 372-596 109-319 (509)
257 PRK10382 alkyl hydroperoxide r 70.0 17 0.00036 36.6 7.6 36 70-109 115-152 (187)
258 PLN02308 endoglucanase 68.5 2.4E+02 0.0051 32.9 22.4 111 167-282 72-212 (492)
259 cd03016 PRX_1cys Peroxiredoxin 67.9 12 0.00026 37.9 6.2 36 72-111 117-152 (203)
260 PRK13270 treF trehalase; Provi 67.1 2E+02 0.0042 34.1 16.4 129 409-569 347-481 (549)
261 PF00578 AhpC-TSA: AhpC/TSA fa 66.6 2.7 6E-05 38.0 1.1 11 15-25 35-45 (124)
262 PRK15000 peroxidase; Provision 66.5 11 0.00024 38.2 5.6 35 71-110 124-159 (200)
263 PRK13271 treA trehalase; Provi 66.4 1.2E+02 0.0027 35.8 14.7 130 409-569 337-472 (569)
264 PLN02345 endoglucanase 66.4 2.1E+02 0.0045 33.1 16.3 118 447-585 82-228 (469)
265 PLN02266 endoglucanase 65.9 2.5E+02 0.0054 32.9 16.9 125 447-588 130-281 (510)
266 PF03200 Glyco_hydro_63: Manno 64.6 75 0.0016 39.2 13.0 55 409-475 559-613 (801)
267 PF01270 Glyco_hydro_8: Glycos 64.4 21 0.00046 39.3 7.7 97 415-530 116-216 (342)
268 PF09492 Pec_lyase: Pectic aci 64.3 26 0.00057 37.7 8.0 102 402-525 33-146 (289)
269 PF05426 Alginate_lyase: Algin 63.9 1.9E+02 0.0041 30.2 15.2 36 244-279 52-87 (272)
270 KOG2430 Glycosyl hydrolase, fa 63.6 82 0.0018 34.5 11.4 96 409-523 182-283 (587)
271 cd02897 A2M_2 Proteins similar 63.0 25 0.00054 37.5 7.8 77 204-292 46-122 (292)
272 KOG0911 Glutaredoxin-related p 62.9 3.3 7.2E-05 42.6 1.0 56 11-78 22-77 (227)
273 KOG2431 1, 2-alpha-mannosidase 62.9 2.7E+02 0.0059 31.6 17.0 295 235-605 166-489 (546)
274 PRK11097 endo-1,4-D-glucanase; 62.1 67 0.0015 36.0 11.0 104 405-524 109-215 (376)
275 cd03014 PRX_Atyp2cys Peroxired 61.5 9.5 0.00021 35.8 3.8 32 72-107 110-142 (143)
276 PF06110 DUF953: Eukaryotic pr 60.9 6.2 0.00013 36.9 2.3 70 5-82 25-100 (119)
277 PF01204 Trehalase: Trehalase; 60.9 1.1E+02 0.0023 35.8 13.0 56 408-475 304-362 (512)
278 KOG2787 Lanthionine synthetase 60.3 81 0.0018 34.5 10.7 116 447-590 241-357 (403)
279 cd02971 PRX_family Peroxiredox 58.7 12 0.00025 34.7 3.8 15 14-28 31-45 (140)
280 PF13249 Prenyltrans_2: Prenyl 58.2 28 0.0006 30.9 6.1 22 270-292 91-112 (113)
281 TIGR01561 gde_arch glycogen de 57.2 2.2E+02 0.0047 33.9 14.6 138 451-595 313-468 (575)
282 PF00759 Glyco_hydro_9: Glycos 56.4 2.5E+02 0.0055 31.7 14.9 127 447-591 94-247 (444)
283 KOG0912 Thiol-disulfide isomer 56.3 20 0.00044 38.7 5.4 53 12-75 19-76 (375)
284 TIGR02739 TraF type-F conjugat 55.7 33 0.00072 36.4 6.9 66 12-84 156-226 (256)
285 PRK13191 putative peroxiredoxi 55.6 19 0.00041 37.0 5.1 37 71-111 123-159 (215)
286 PTZ00253 tryparedoxin peroxida 55.5 15 0.00033 37.0 4.3 35 71-109 126-160 (199)
287 PF01270 Glyco_hydro_8: Glycos 52.9 1.9E+02 0.0041 31.9 12.7 126 454-595 75-211 (342)
288 cd02970 PRX_like2 Peroxiredoxi 50.4 27 0.00059 32.5 4.9 61 14-85 32-93 (149)
289 cd02990 UAS_FAF1 UAS family, F 49.4 89 0.0019 30.0 8.1 58 26-83 41-108 (136)
290 PF04545 Sigma70_r4: Sigma-70, 48.8 28 0.00062 26.7 3.9 29 367-395 22-50 (50)
291 cd02896 complement_C3_C4_C5 Pr 48.4 1.7E+02 0.0036 31.5 11.1 25 271-296 262-286 (297)
292 PLN00119 endoglucanase 47.6 5.2E+02 0.011 30.2 16.9 116 447-586 117-264 (489)
293 KOG1731 FAD-dependent sulfhydr 47.3 20 0.00044 41.7 4.0 66 12-88 63-133 (606)
294 PF04685 DUF608: Protein of un 46.9 73 0.0016 35.6 8.3 108 409-534 96-217 (365)
295 COG3408 GDB1 Glycogen debranch 46.4 1.5E+02 0.0033 35.6 11.3 98 447-546 362-481 (641)
296 PF04685 DUF608: Protein of un 46.4 77 0.0017 35.4 8.4 39 244-282 95-137 (365)
297 PLN02567 alpha,alpha-trehalase 46.2 3.9E+02 0.0085 31.6 14.4 137 411-570 328-478 (554)
298 TIGR02393 RpoD_Cterm RNA polym 46.0 42 0.00092 34.7 5.9 46 328-395 181-226 (238)
299 PRK13271 treA trehalase; Provi 45.7 50 0.0011 39.0 7.0 50 488-537 340-396 (569)
300 PRK10137 alpha-glucosidase; Pr 45.5 3.2E+02 0.0069 33.8 13.8 51 411-473 578-631 (786)
301 PRK13189 peroxiredoxin; Provis 45.4 45 0.00098 34.4 6.0 37 71-111 125-161 (222)
302 PF13243 Prenyltrans_1: Prenyl 45.2 5.4 0.00012 35.6 -0.8 39 253-292 28-66 (109)
303 PF07678 A2M_comp: A-macroglob 44.4 1.1E+02 0.0023 32.0 8.7 116 150-296 112-233 (246)
304 cd03060 GST_N_Omega_like GST_N 43.9 63 0.0014 26.3 5.6 57 14-86 5-61 (71)
305 PF02011 Glyco_hydro_48: Glyco 43.7 6.2E+02 0.013 30.0 15.0 100 413-528 405-528 (619)
306 PF13417 GST_N_3: Glutathione 43.3 55 0.0012 27.1 5.2 57 14-87 3-59 (75)
307 PLN02909 Endoglucanase 43.2 6E+02 0.013 29.6 16.7 141 414-586 95-264 (486)
308 PRK05901 RNA polymerase sigma 42.6 45 0.00098 38.9 6.0 47 328-396 452-498 (509)
309 KOG3760 Heparan sulfate-glucur 42.1 1.9E+02 0.0041 32.5 10.1 140 417-590 427-585 (594)
310 COG3408 GDB1 Glycogen debranch 42.0 3.8E+02 0.0082 32.4 13.7 140 451-596 303-462 (641)
311 COG3387 SGA1 Glucoamylase and 41.7 6.9E+02 0.015 30.0 18.4 290 69-522 178-513 (612)
312 PRK13272 treA trehalase; Provi 40.1 5.2E+02 0.011 30.6 14.0 129 411-569 340-472 (542)
313 PTZ00137 2-Cys peroxiredoxin; 40.1 83 0.0018 33.5 7.0 36 71-110 187-222 (261)
314 cd03051 GST_N_GTT2_like GST_N 39.9 73 0.0016 25.6 5.4 60 14-86 5-64 (74)
315 PRK13703 conjugal pilus assemb 39.5 76 0.0017 33.5 6.6 67 12-85 149-220 (248)
316 PLN02993 lupeol synthase 39.3 1.8E+02 0.004 35.7 10.5 153 415-593 422-601 (763)
317 PRK05949 RNA polymerase sigma 38.7 85 0.0018 34.4 7.1 46 328-395 271-316 (327)
318 PF08281 Sigma70_r4_2: Sigma-7 38.0 43 0.00094 26.0 3.5 27 367-393 28-54 (54)
319 PRK07921 RNA polymerase sigma 37.6 90 0.002 34.2 7.1 54 321-396 256-313 (324)
320 cd03031 GRX_GRX_like Glutaredo 36.7 46 0.001 32.2 4.1 39 17-69 15-54 (147)
321 PRK07405 RNA polymerase sigma 36.4 96 0.0021 33.8 7.1 46 328-395 261-306 (317)
322 PF04967 HTH_10: HTH DNA bindi 35.7 57 0.0012 26.1 3.8 30 365-394 23-52 (53)
323 PLN02710 farnesyltranstransfer 34.1 3.7E+02 0.0079 30.9 11.3 118 148-291 89-210 (439)
324 TIGR02997 Sig70-cyanoRpoD RNA 34.0 88 0.0019 33.6 6.3 53 320-394 242-298 (298)
325 PRK07598 RNA polymerase sigma 33.4 96 0.0021 35.3 6.6 55 320-396 343-401 (415)
326 PF03200 Glyco_hydro_63: Manno 33.0 3.7E+02 0.0081 33.3 11.9 48 492-539 566-617 (801)
327 PLN03009 cellulase 32.8 8.6E+02 0.019 28.4 18.5 145 415-586 90-264 (495)
328 cd00570 GST_N_family Glutathio 32.5 1.2E+02 0.0025 23.3 5.4 57 14-86 5-61 (71)
329 TIGR02957 SigX4 RNA polymerase 32.5 85 0.0018 33.4 5.8 53 367-426 126-178 (281)
330 PF01204 Trehalase: Trehalase; 32.5 67 0.0014 37.5 5.3 44 494-537 317-364 (512)
331 cd03040 GST_N_mPGES2 GST_N fam 31.4 57 0.0012 27.0 3.4 59 13-87 5-64 (77)
332 PRK05658 RNA polymerase sigma 31.4 63 0.0014 38.6 5.0 65 320-406 549-618 (619)
333 PRK09210 RNA polymerase sigma 30.7 1.2E+02 0.0027 33.7 6.9 55 320-396 298-356 (367)
334 PLN02175 endoglucanase 29.8 9.5E+02 0.021 28.0 17.1 124 447-586 108-258 (484)
335 PLN02613 endoglucanase 28.6 1E+03 0.022 27.9 17.2 119 447-587 112-257 (498)
336 PRK09636 RNA polymerase sigma 27.4 1.3E+02 0.0028 32.1 6.1 53 367-426 133-185 (293)
337 PRK09635 sigI RNA polymerase s 26.4 1.2E+02 0.0026 32.5 5.7 54 366-426 135-188 (290)
338 PF13249 Prenyltrans_2: Prenyl 26.2 1E+02 0.0022 27.2 4.4 45 244-294 20-64 (113)
339 cd02977 ArsC_family Arsenate R 25.9 57 0.0012 29.1 2.7 58 13-86 4-64 (105)
340 cd03036 ArsC_like Arsenate Red 25.4 68 0.0015 29.2 3.1 59 13-85 4-63 (111)
341 PRK08241 RNA polymerase factor 25.3 1.7E+02 0.0036 31.8 6.7 56 366-425 170-227 (339)
342 cd02891 A2M_like Proteins simi 24.5 2.9E+02 0.0063 28.7 8.1 77 204-293 46-122 (282)
343 PF07449 HyaE: Hydrogenase-1 e 24.1 34 0.00073 31.5 0.8 46 32-86 51-96 (107)
344 COG0568 RpoD DNA-directed RNA 23.9 2E+02 0.0044 31.9 6.8 45 328-394 284-328 (342)
345 PRK07406 RNA polymerase sigma 23.8 1.9E+02 0.0042 32.4 6.8 30 367-396 333-362 (373)
346 PRK12540 RNA polymerase sigma 23.4 1.2E+02 0.0026 30.0 4.6 37 367-403 129-165 (182)
347 cd03041 GST_N_2GST_N GST_N fam 21.6 1.8E+02 0.0039 24.2 4.7 60 14-87 6-65 (77)
348 COG5029 CAL1 Prenyltransferase 20.6 1E+03 0.022 26.3 10.9 77 453-542 225-301 (342)
349 PF02966 DIM1: Mitosis protein 20.4 1.9E+02 0.0041 27.6 4.9 58 16-85 30-87 (133)
350 cd03023 DsbA_Com1_like DsbA fa 20.3 67 0.0015 29.8 2.0 13 14-26 13-25 (154)
351 PRK09642 RNA polymerase sigma 20.1 1.3E+02 0.0028 28.6 4.0 31 366-396 123-153 (160)
352 PLN02567 alpha,alpha-trehalase 20.1 1.5E+02 0.0033 35.0 5.3 42 496-537 340-385 (554)
353 COG3413 Predicted DNA binding 20.0 1.3E+02 0.0028 30.7 4.2 31 365-395 178-208 (215)
354 PF05768 DUF836: Glutaredoxin- 20.0 77 0.0017 27.0 2.2 51 14-79 6-57 (81)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-163 Score=1361.40 Aligned_cols=614 Identities=42% Similarity=0.703 Sum_probs=573.4
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccCCC
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPE 94 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p~~ 94 (714)
.+||||||||++|||+||+||++||++|||||||||||||||++||++||+|+|+||||+||||||||+|||++|||||+
T Consensus 52 ys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e 131 (667)
T COG1331 52 YSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKE 131 (667)
T ss_pred cccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCC
Q 005115 95 DKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSA 174 (714)
Q Consensus 95 ~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~a 174 (714)
+++|+|||+++|++|.+.|+++|++++++|+.+.+.++....+. .+..++.+.+++++.++.+.||++|||||++
T Consensus 132 ~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~~~~l~~~~~~~-----~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~ 206 (667)
T COG1331 132 DRYGRPGFKQLLEAIRETWREDREELLQSAERVLEALEGLARPS-----AGEELDEEVLDRAAEALARSFDREYGGFGSA 206 (667)
T ss_pred ccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCC-----ccccCChHHHHHHHHHHHHhcchhhCCcCCC
Confidence 99999999999999999999999999999999999998754221 1234577889999999999999999999999
Q ss_pred CCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHH
Q 005115 175 PKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLA 254 (714)
Q Consensus 175 pKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll 254 (714)
||||+|+.+.|||+++.+++ ++++++|+++||++|+.|||||||||||||||||++|.||||||||||||+|+
T Consensus 207 pKFP~~~~l~~Llr~~~~~~-------d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~ 279 (667)
T COG1331 207 PKFPPPHLLLFLLRYSLRTG-------DERALDMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLL 279 (667)
T ss_pred CCCCChHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHH
Confidence 99999999999999998754 47999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHH
Q 005115 255 NVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKE 334 (714)
Q Consensus 255 ~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~ 334 (714)
.+|++||++|||++|+++|++|++||+|+|++|+||||+|+||||+ ++||+||+||.+||+++||+++++||+
T Consensus 280 ~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~ 352 (667)
T COG1331 280 RAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACK 352 (667)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999999999999999999999999994 699999999999999999999999999
Q ss_pred HhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchH
Q 005115 335 HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWN 414 (714)
Q Consensus 335 ~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WN 414 (714)
+|+|+++|| |+|+||||+..+.++ + +++..+.++.+|+||+++|++|++|++||||||+||
T Consensus 353 ~f~vs~~Gn------------feGrnvL~~~~~~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wN 413 (667)
T COG1331 353 YFDVSEEGN------------FEGRNVLHVPGPLEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWN 413 (667)
T ss_pred HcccCCCCC------------cCCceeecccCchhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccH
Confidence 999999999 689999999988776 2 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
|+||.||++|++++++ ++|++.|+++++||.+++++ ++|.|.+++|.....|+++|||++|
T Consensus 414 glmi~aLa~a~~~~~d----------------~~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i 474 (667)
T COG1331 414 GLMIAALAEAGRVLGD----------------PEYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLI 474 (667)
T ss_pred HHHHHHHHHHHHHcCC----------------hHHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHH
Confidence 9999999999999998 89999999999999999997 3899999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
.|+|+||++|+|.+||+.|++|++.++++|||++ ||||+++.+++.+++|+++.+|+++||+||+++.+|++|+.+||+
T Consensus 475 ~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~ 553 (667)
T COG1331 475 LGLLALYEATGDLAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD 553 (667)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999998 779999999999999999999999999999999999999999996
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCChhHHHHHHHHHhcCCCCeEEEEeCCC
Q 005115 575 SKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPA 654 (714)
Q Consensus 575 ~~~~~y~e~A~~~l~~~~~~i~~~p~~~~~~l~a~~~~~~~~~~~vvi~g~~~~~~~~~l~~~~~~~~~P~~~v~~~~~~ 654 (714)
..|.+.|+++|++|++.+.++|.+++.++.|++++..+ +.+|||+|. ...++++++.+.|+|+++++....+
T Consensus 554 ---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a~~~~~~~-~~~ivvv~~----~~~~~~~~~~~~~~P~~~l~~~~~~ 625 (667)
T COG1331 554 ---ARYLEAAEDILQAFAGLAERAPFAHAGLLLAAEFLISG-PLVIVVAGD----PRSELLRAALRLYLPEKVLVVGTEG 625 (667)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHcCC-ceEEEEeCC----CcHHHHHHHHhcCCcceEEEEeccc
Confidence 78999999999999999999999999999999998876 588888882 3458999999999999999886432
Q ss_pred CcchhhhhhhccccchhhhhccCCCCccEEEEccCCccCCCCCCHHHHHHHhhc
Q 005115 655 DTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLE 708 (714)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pv~~~~~l~~~L~~ 708 (714)
. +.++.+...++++ ++|||++++|++||+|+++|.++|..
T Consensus 626 ~-------------~~~~~~~~l~~g~-~ayvC~~~~C~~P~~~~e~l~~~l~~ 665 (667)
T COG1331 626 Y-------------VSLLVDGMLGGGK-TAYVCTGDACLPPVTSPEELAELLAV 665 (667)
T ss_pred c-------------cCcchhhccCCCC-eEEEecCCccCCCcCCHHHHHHHHhh
Confidence 1 1111221122445 99999999999999999999999875
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=5.7e-160 Score=1276.98 Aligned_cols=646 Identities=61% Similarity=1.005 Sum_probs=598.0
Q ss_pred CCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccCCCC
Q 005115 16 HFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPED 95 (714)
Q Consensus 16 ~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p~~~ 95 (714)
+-|||||||++|+|+|+|++++||++||.||||||||||||++||.++|+..|.||||++||||||.+||.|||||||++
T Consensus 122 stchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d 201 (786)
T KOG2244|consen 122 STCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPND 201 (786)
T ss_pred ccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCCC
Q 005115 96 KYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAP 175 (714)
Q Consensus 96 ~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~ap 175 (714)
++|||||.++|++|++.|.++|+.+++.+..+++.|+++..+.++ .. +.++++|.+.++.+.+|||.+|
T Consensus 202 ~~g~~gF~TvL~~I~~~w~~kr~tllet~~~~is~ls~al~peaa-------~g----~~~~ekl~e~i~~~~qGfg~ap 270 (786)
T KOG2244|consen 202 NYGRPGFKTVLKKIKDAWNSKRDTLLETGTYAISELSKALSPEAA-------TG----DNRAEKLSEGISREAQGFGEAP 270 (786)
T ss_pred CCCCccHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHhhcCcccc-------cc----chhHHHHHHHHHHHhhhhccCC
Confidence 999999999999999999999999999998888888755442111 11 2557788999999999999999
Q ss_pred CCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHH
Q 005115 176 KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLAN 255 (714)
Q Consensus 176 KFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~ 255 (714)
|||.+..|.||+.+... +.+++.+.|+.+||+.|+.|||+|||||||||||||+.|+|||||||||||+||+.
T Consensus 271 KFP~~~~L~FLf~~~lt-------~k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~ 343 (786)
T KOG2244|consen 271 KFPKACDLDFLFTFNLT-------SKADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLAN 343 (786)
T ss_pred CCCCccccceeeeeccc-------ccCcHHHHHHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHH
Confidence 99999999999987543 23578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhh-------
Q 005115 256 VYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH------- 328 (714)
Q Consensus 256 ~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~------- 328 (714)
+|++||++|+|+.|..+|++|++||.|+|.+|+||||+++||||.+.++++.++||+||+||.+||+++|++.
T Consensus 344 aysdafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~ 423 (786)
T KOG2244|consen 344 AYSDAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASL 423 (786)
T ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 005115 329 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 408 (714)
Q Consensus 329 ~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdK 408 (714)
+++|+.+|||++.||+ ++.+||||++.|||||..+.+.++.|..++++++++++.|.+++++|+++|.+||+|++|+|
T Consensus 424 fdl~a~hygvk~sGnv--s~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsK 501 (786)
T KOG2244|consen 424 FDLFAEHYGVKKSGNV--SSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSK 501 (786)
T ss_pred HHHHHHHcCCCCCCCC--CCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Confidence 4899999999999996 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCC-------
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGP------- 480 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~-~~~~g~------- 480 (714)
||++||||||++|++|+.+++.+ ++|++.|...++|+.++|+|...+.|.+ +..+|.
T Consensus 502 ii~sWnGLviSgl~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~ 566 (786)
T KOG2244|consen 502 IIVSWNGLVISGLAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHS 566 (786)
T ss_pred heeeccchhhHHHHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceecc
Confidence 99999999999999999999872 6999999999999999999987778887 444332
Q ss_pred ---CCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCCh
Q 005115 481 ---SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG 557 (714)
Q Consensus 481 ---~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~ 557 (714)
...++|+|||||+|.|||+||+++|+.+||+||++|++....+||| +||||.+..+++++++|.|+++|||+||+
T Consensus 567 n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~ 644 (786)
T KOG2244|consen 567 NRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSG 644 (786)
T ss_pred CCccccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCc
Confidence 1346799999999999999999999999999999999999999999 88999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCChhHHHHHHH
Q 005115 558 NSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAA 637 (714)
Q Consensus 558 nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~~~~~l~a~~~~~~~~~~~vvi~g~~~~~~~~~l~~~ 637 (714)
||+.+.||+||+.+++. +.|++.|.++|..|+.++.+.|.+.|.|++|+.. .++..++|||||+++++++.+++.+
T Consensus 645 nSVsahNLvrL~~~~~~---e~yl~ka~~ll~~fseRl~~vpvAlPeM~~Al~~-~q~glk~vvlvGd~~s~d~~~~vs~ 720 (786)
T KOG2244|consen 645 NSVSAHNLVRLASIVAA---ESYLNKAHRLLAVFSERLREVPVALPEMCCALMI-SQPGLKQVVLVGDKSSPDLTNMVSA 720 (786)
T ss_pred cchhhhhHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHh-hccCcceEEEECCCCChHHHHHHHH
Confidence 99999999999999984 7899999999999999999999999999998755 4556899999999999999999999
Q ss_pred HHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhhccCCCCccEEEEccCCccCCCCCCHHHHHHHhh
Q 005115 638 AHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLL 707 (714)
Q Consensus 638 ~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pv~~~~~l~~~L~ 707 (714)
+++.|+||++||+++|++. .+++....++...|.+ .++++++|||++++|++||+++.+|+++|.
T Consensus 721 ~~s~yipn~~vihidpsd~--ee~s~~~ls~ka~m~~---~g~k~tayvC~~~aC~~PVtdpqeLe~l~s 785 (786)
T KOG2244|consen 721 AHSVYIPNKTVIHIDPSDE--EEFSEEHLSNKAEMAK---NGEKVTAYVCQHFACSPPVTDPQELERLLS 785 (786)
T ss_pred HHHhcCCcceEEEeCCCCH--HHHHhccCchHHHHHh---cCCCceEEEecCcccCCCCCCHHHHHHHhc
Confidence 9999999999999988654 3456665666666654 468999999999999999999999999875
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=1.2e-42 Score=334.56 Aligned_cols=120 Identities=53% Similarity=1.005 Sum_probs=100.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.+++||||||||++|||+||+||++||++||+||||||||||||++||.++|+|+|+||||++|||||||+||+++||+|
T Consensus 44 ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P 123 (163)
T PF03190_consen 44 IGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFP 123 (163)
T ss_dssp EE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--
T ss_pred EEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005115 93 PEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLS 132 (714)
Q Consensus 93 ~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~ 132 (714)
|++++|+|+|+++|++|++.|+++|++|.+.|++|.++|+
T Consensus 124 ~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~~l~ 163 (163)
T PF03190_consen 124 PEDRYGRPGFLQLLERIAELWKENREQVEESADEILEALQ 163 (163)
T ss_dssp SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-SHH-
T ss_pred CCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999988774
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.94 E-value=9.5e-27 Score=217.12 Aligned_cols=103 Identities=66% Similarity=1.179 Sum_probs=100.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.+|+||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|+...+.+.|++|||++||++|+|++++++||+|
T Consensus 22 f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~ 101 (124)
T cd02955 22 IGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYFP 101 (124)
T ss_pred EccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHhh
Q 005115 93 PEDKYGRPGFKTILRKVKDAWDK 115 (714)
Q Consensus 93 ~~~~~~~~~f~~~L~~i~~~w~~ 115 (714)
+++.++.+||.++|++|.+.|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~ 124 (124)
T cd02955 102 PEDRYGRPGFKTVLEKIRELWRE 124 (124)
T ss_pred CCCcCCCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999973
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.93 E-value=1.3e-24 Score=239.00 Aligned_cols=259 Identities=20% Similarity=0.188 Sum_probs=211.8
Q ss_pred HHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC
Q 005115 209 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG 288 (714)
Q Consensus 209 ~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~ 288 (714)
...-|..... -.+|+..|||+ .++|.++.+..-.|.+|.||++|++|+.+|++++++.+++.|+++++||.+++++++
T Consensus 16 ~~~~~~fw~~-~~~d~~~gg~~-~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~ 93 (384)
T cd00249 16 LEDLLPFWLE-AGLDREAGGFF-ECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD 93 (384)
T ss_pred HHHHHHHHHh-cCCCCCCCCeE-EEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC
Confidence 3444444444 35899999999 589999998666999999999999999999999999999999999999999999988
Q ss_pred -CceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCC
Q 005115 289 -GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 367 (714)
Q Consensus 289 -Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~ 367 (714)
|||+.+.|.|..+.+ .
T Consensus 94 ~Gg~~~~~~~~g~~~~-----------------------------------------------------~---------- 110 (384)
T cd00249 94 HGGWYFALDQDGRPVD-----------------------------------------------------A---------- 110 (384)
T ss_pred CCCEEEEEcCCCCCcc-----------------------------------------------------c----------
Confidence 999998876542100 0
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 005115 368 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 447 (714)
Q Consensus 368 ~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~ 447 (714)
.+.+.+ .+++|.||+++++++++ +
T Consensus 111 ----------------------------------~~~l~~------~a~~l~ala~~~~at~d----------------~ 134 (384)
T cd00249 111 ----------------------------------TKDLYS------HAFALLAAAQAAKVGGD----------------P 134 (384)
T ss_pred ----------------------------------ccchHH------HHHHHHHHHHHHHhcCC----------------H
Confidence 011222 38999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Q 005115 448 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 448 ~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~ 527 (714)
+|++.|+++++++.++++ +++|+++.....+....++ .++|++++.+++.++++|+|++|++.|+++++.+.++|+|+
T Consensus 135 ~~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~ 212 (384)
T cd00249 135 EARALAEETIDLLERRFW-EDHPGAFDEADPGTPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDA 212 (384)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCcccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999 4456665443322233455 79999999999999999999999999999999999999998
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005115 528 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 528 ~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i 595 (714)
++|+++....++..++ ..+..+.+.|++++.++.+|++|+.++++ +.|.+.|++++..+....
T Consensus 213 ~~G~~~e~~~~~~~~~--~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~---~~~~~~a~~~~~~~~~~~ 275 (384)
T cd00249 213 ESGVVREHFDEDWNPY--NGDKGRHQEPGHQFEWAWLLLRIASRSGQ---AWLIEKARRLFDLALALG 275 (384)
T ss_pred ccCeEEEEECCCCCCC--cCcCCCcCCCchHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHhC
Confidence 8888887665554444 34455778899999999999999999985 789999999998876554
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.91 E-value=4.5e-22 Score=218.97 Aligned_cols=306 Identities=15% Similarity=0.097 Sum_probs=230.4
Q ss_pred HHHHHHHHHHh-cccccCCCCCC------CC----CCCC--hhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHh
Q 005115 152 ALRLCAEQLSK-SYDSRFGGFGS------AP----KFPR--PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAK 218 (714)
Q Consensus 152 ~~~~~~~~l~~-~~D~~~GGfg~------ap----KFP~--~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~ 218 (714)
.+++++..|.. .+|+++|||.. .| |.=. .-.+..+...+.. .++++++++|.++++.|..
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~-------~~~~~~l~~A~~~~~fl~~ 87 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLL-------GWRPEWLEAAEHGLEYLDR 87 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHh-------cCChhHHHHHHHHHHHHHH
Confidence 45677888887 57999999965 12 2211 1112222222222 2357899999999999998
Q ss_pred CCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCC
Q 005115 219 GGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDAD 298 (714)
Q Consensus 219 GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DAD 298 (714)
-.+|...|||++ ++|++|.+.+..|+|||+|.+|.+|+++|++|+++.|++.|+++++++.+.++++.|++|...+.|
T Consensus 88 -~~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~ 165 (384)
T cd00249 88 -HGRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG 165 (384)
T ss_pred -hCcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 677887899985 889999988889999999999999999999999999999999999999999985557776543322
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.. .
T Consensus 166 ~~------------------------------------------~----------------------------------- 168 (384)
T cd00249 166 TP------------------------------------------P----------------------------------- 168 (384)
T ss_pred CC------------------------------------------C-----------------------------------
Confidence 10 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
.|...+ ++.++.+|.+++.++++ ++|++.|+++++
T Consensus 169 -----------------------~~~~~~------~~h~~~all~l~~~tgd----------------~~~~~~A~~l~~ 203 (384)
T cd00249 169 -----------------------YRGSNP------HMHLLEAMLAAYEATGE----------------QKYLDRADEIAD 203 (384)
T ss_pred -----------------------CCCCCh------hHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHH
Confidence 000011 14457789999999998 899999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCCCCC------CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcc
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPSKAP------GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 532 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~~~~------~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggf 532 (714)
.+.++++++.+|+++..+.++..... ..+.-.+.++.++++++++|++++|++.|+++++.+.++++|+++|++
T Consensus 204 ~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~ 283 (384)
T cd00249 204 LILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGL 283 (384)
T ss_pred HHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCE
Confidence 99999998777888766543311011 111123446779999999999999999999999999999999998888
Q ss_pred ccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 533 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 533 f~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
|++..++... ...|++.+++++.++.+++.|+.+||+ +.|.+.++++++.......
T Consensus 284 ~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 284 YYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred EEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcC
Confidence 8833222221 245789999999999999999999995 7799999888888755443
No 7
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.73 E-value=5e-17 Score=177.16 Aligned_cols=240 Identities=19% Similarity=0.223 Sum_probs=174.8
Q ss_pred cEEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCCccccCc
Q 005115 228 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 305 (714)
Q Consensus 228 GF~RYsvD~~W~v-PHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~-Ggfysa~DADs~~~~~~ 305 (714)
|||- +.|.++.+ +-..|.+.-||+++++|+.||+ +|++.|+++|+++++||.+.+++++ ||||++.|.+. +
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~---- 73 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-P---- 73 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-E----
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-C----
Confidence 6776 48999986 4455699999999999999999 8899999999999999999999877 99999875332 0
Q ss_pred ccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHH
Q 005115 306 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 385 (714)
Q Consensus 306 ~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~ 385 (714)
+..
T Consensus 74 --------------------------------------------------------~~~--------------------- 76 (346)
T PF07221_consen 74 --------------------------------------------------------LDP--------------------- 76 (346)
T ss_dssp --------------------------------------------------------EE----------------------
T ss_pred --------------------------------------------------------Ccc---------------------
Confidence 000
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 005115 386 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 465 (714)
Q Consensus 386 l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~ 465 (714)
..-..=++++|.||++ ++++++ +++++.|+++.++|.++++
T Consensus 77 ----------------------~~~~Y~~af~l~ala~-~~~tg~----------------~~~~~~A~~~~~~l~~~~~ 117 (346)
T PF07221_consen 77 ----------------------QKDLYDQAFALLALAE-ARATGD----------------PEALELAEQTLEFLERRFW 117 (346)
T ss_dssp -----------------------EEHHHHHHHHHHHHH-HHCTT-----------------TTHHHHHHHHHHHHHHHTE
T ss_pred ----------------------ccchHHHHHHHHHHHH-HHHhCC----------------hhHHHHHHHHHHHHHHHhc
Confidence 0001124899999999 788887 7899999999999999999
Q ss_pred ccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc-
Q 005115 466 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL- 544 (714)
Q Consensus 466 d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~- 544 (714)
+++.|.+...+..+. ......++++++++|++.||++|++++|+++|.++.+.+.++|+|+++|...+-...+..++.
T Consensus 118 d~~~g~~~~~~~~~~-~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~ 196 (346)
T PF07221_consen 118 DPEGGGYRESFDPDW-SPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPD 196 (346)
T ss_dssp ETTTTEE--EETTTS-SCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETT
T ss_pred ccccCcceeccCCcc-ccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccc
Confidence 987676655443322 122458999999999999999999999999999999999999999888754332222221111
Q ss_pred -ccccCCC--CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005115 545 -RVKEDHD--GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 592 (714)
Q Consensus 545 -r~k~~~D--~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~ 592 (714)
...+... ...|.++-.+++.|++++..++.. ++.+.+.|.+++....
T Consensus 197 ~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-~~~~~~~a~~l~~~~~ 246 (346)
T PF07221_consen 197 GSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-DPDWLERARRLFDFAL 246 (346)
T ss_dssp TTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--HTHHHHHHHHHHHHH
T ss_pred cccccccccCccCCchhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Confidence 0000011 257899999999999998544432 3677888877766544
No 8
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.68 E-value=3.5e-16 Score=170.60 Aligned_cols=270 Identities=21% Similarity=0.211 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 281 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~ 281 (714)
.+..++.|.++++.|.. ..+|...|||++ ++++.. +....|.+||+|..|.++++ +.+|+++.+++.|++++++|.
T Consensus 38 ~~~~l~~A~~~~~fl~~-~~~D~~~Gg~~~-~~~~~~-~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~ 113 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRK-HFRDPEYGGWYR-SLDDGG-PLDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLE 113 (346)
T ss_dssp SHHHHHHHHHHHHHHHH-TTBTTTTSSBSS-EEETTE-EEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-hcccCCCCCEEE-EeCCCC-CCccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Confidence 57899999999999988 677999999996 556666 67789999999999999999 899999999999999999999
Q ss_pred HhccCCCCce-eeeccCCCccccCcccccCCceEeechHHHHHHhhhh---HHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 005115 282 RDMIGPGGEI-FSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH---AILFKEHYYLKPTGNCDLSRMSDPHNEFK 357 (714)
Q Consensus 282 ~~m~~p~Ggf-ysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~---~~~~~~~~~v~~~Gn~~~~~~~d~~~~~e 357 (714)
+.+++|.+|+ ..+.+.|.... .. ++.. .+.+...+.++.+..
T Consensus 114 ~~~~d~~~g~~~~~~~~~~~~~--------------r~------~n~~mhl~eA~l~l~~~~~~~~-------------- 159 (346)
T PF07221_consen 114 RRFWDPEGGGYRESFDPDWSPP--------------RG------QNPHMHLLEAFLALYEATGDPR-------------- 159 (346)
T ss_dssp HHTEETTTTEE--EETTTSSCB--------------EE------HHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHhcccccCcceeccCCccccC--------------CC------CChhHHHHHHHHHHHHhccCHH--------------
Confidence 9999997444 44555543110 00 0000 011111111111000
Q ss_pred CcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCc--chhhchH------------HH---HHHH
Q 005115 358 GKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDD--KVIVSWN------------GL---VISS 420 (714)
Q Consensus 358 g~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Dd--Kilt~WN------------al---~I~a 420 (714)
-.+...++++.+.+++......+.+-++|+ +.+...+ |- .+|-
T Consensus 160 --------------------~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wl 219 (346)
T PF07221_consen 160 --------------------YLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWL 219 (346)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHH
Confidence 012223333334434443333323333332 2221111 22 3667
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHH
Q 005115 421 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLL 498 (714)
Q Consensus 421 La~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~-~~~~~l~DyA~li~all 498 (714)
|.++....+. .++++++.|.+++++..++-||++.|+++.+ ..+|.+ ...+.++.++.++.|++
T Consensus 220 l~~~~~~~~~--------------~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~ 285 (346)
T PF07221_consen 220 LLEAARLTGR--------------GDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALL 285 (346)
T ss_dssp HHHHHHHCHC--------------T-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHH
T ss_pred HHHHHHhccc--------------ccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHH
Confidence 7777743332 1278999999999999999999988877766 456665 45688999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccc
Q 005115 499 DLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 543 (714)
Q Consensus 499 ~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li 543 (714)
.+|+.||++.|++.+.++.+.+.++|.|++.|+||+.-..+..+.
T Consensus 286 ~~~~~tg~~~~~~~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~ 330 (346)
T PF07221_consen 286 AAYELTGDEKYLDWARRVWDYIFRHFIDPEYGEWFDYLDRDGSPL 330 (346)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BS
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHhCCCCCCCeeEeeECCCCCCC
Confidence 999999999999999999999999999999999998765555433
No 9
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.51 E-value=1.3e-12 Score=144.13 Aligned_cols=289 Identities=20% Similarity=0.263 Sum_probs=180.6
Q ss_pred HHHHHHHhccccc-CCCCCC---CC--CCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005115 155 LCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 228 (714)
Q Consensus 155 ~~~~~l~~~~D~~-~GGfg~---ap--KFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG 228 (714)
.++..+.+.|+.. .|++.+ .| ..|.+..+.-|..++.+++ ++...+++..++..+.... +|.
T Consensus 8 ~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~---- 75 (370)
T PF03663_consen 8 SAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS---- 75 (370)
T ss_dssp HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS----
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc----
Confidence 3445555777776 555432 22 3566777888888888764 3788999999999987744 110
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCC--CCceeeeccCCCcc
Q 005115 229 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGP--GGEIFSAEDADSAE 301 (714)
Q Consensus 229 F~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~-----~y~~~A~~~~~fl~~~m~~p--~Ggfysa~DADs~~ 301 (714)
|.. ..| ....-.-|||.+..++.+||++|+++ .|++.|+++++++.+..-.. +||+++..+.-.
T Consensus 76 ~~~----~~~---~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~-- 146 (370)
T PF03663_consen 76 YNP----SNG---SGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTN-- 146 (370)
T ss_dssp S------S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET------
T ss_pred ccc----ccc---cccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccC--
Confidence 110 000 01122336999999999999999999 99999999999999544332 388887532100
Q ss_pred ccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHH
Q 005115 302 TEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEK 381 (714)
Q Consensus 302 ~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~ 381 (714)
.+ ...||
T Consensus 147 ---------------------------------------~~-------------~~~Kn--------------------- 153 (370)
T PF03663_consen 147 ---------------------------------------SG-------------YDYKN--------------------- 153 (370)
T ss_dssp ---------------------------------------TE-------------EEEEE---------------------
T ss_pred ---------------------------------------CC-------------CCccc---------------------
Confidence 00 01111
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH
Q 005115 382 YLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR 461 (714)
Q Consensus 382 ~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~ 461 (714)
+--|+.++.+.+++|+++++ +.||+.|+++.+|+.
T Consensus 154 -----------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W~~ 188 (370)
T PF03663_consen 154 -----------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDWMR 188 (370)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHhh
Confidence 12489999999999999988 789999999999999
Q ss_pred H-hccccCCCeEEEEec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHhcccccCCccccC
Q 005115 462 R-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYFNT 535 (714)
Q Consensus 462 ~-~l~d~~~G~l~~~~~-~g---~~~~~~~l~DyA~li~all~LyeaTgd~-~~L~~A~~L~~~~~~~F~D~~~Ggff~t 535 (714)
+ +|.|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|++.+..+|+++.+|-+++.
T Consensus 189 ~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~e~ 268 (370)
T PF03663_consen 189 DSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILTEE 268 (370)
T ss_dssp H-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE---
T ss_pred cceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeeecc
Confidence 9 999887787776542 22 2344578899999999999999999887 9999999999999999887654444443
Q ss_pred CCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005115 536 TGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 590 (714)
Q Consensus 536 ~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~ 590 (714)
.-+. ....++-.+.-+++.+..|..|..+.... .+.|.+..++-..+
T Consensus 269 ~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~~-~~~~~~~l~~~a~~ 315 (370)
T PF03663_consen 269 ACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPDT-ADTYRDFLRKNADA 315 (370)
T ss_dssp --------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHH
T ss_pred cccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHH
Confidence 1110 11134446888999999999999998621 23444444443333
No 10
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2.5e-12 Score=138.50 Aligned_cols=303 Identities=17% Similarity=0.130 Sum_probs=224.0
Q ss_pred HHhCCCcccCCCcEEEEecCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005115 216 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 294 (714)
Q Consensus 216 m~~GGi~D~v~GGF~RYsvD~~W~vPH-FEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa 294 (714)
|-..--.|..+||||- ..|.+..+-- -.|.+--+++++++|+.|+.....+.++++|.+.+.|+.+.-++++||+|..
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 3445567999999997 5566666544 6788889999999999999999888899999999999999999999999999
Q ss_pred ccCCCccccCcccccCCceEeechHHHHHHhhhhH--------HHHHHHhcccC--CCCcCCCCCCCCCCccCCcceecc
Q 005115 295 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA--------ILFKEHYYLKP--TGNCDLSRMSDPHNEFKGKNVLIE 364 (714)
Q Consensus 295 ~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~--------~~~~~~~~v~~--~Gn~~~~~~~d~~~~~eg~niL~~ 364 (714)
++.|..+.+.+++...-+|-+.....+..+.++++ ++..++|-=.+ -+-++. .+++......+.+.|+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~--~~~~~~pl~sNp~MHl 179 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEE--DNPGSAPLGSNPHMHL 179 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccc--cCCCCCccCCCcchHH
Confidence 99998888888788777888888888777776432 22222221111 111111 1122222234445665
Q ss_pred cCCchHHHHhcCCC-----HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH---------------HHHHHHHH
Q 005115 365 LNDSSASASKLGMP-----LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL---------------VISSFARA 424 (714)
Q Consensus 365 ~~~~~~~a~~~g~~-----~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal---------------~I~aLa~a 424 (714)
.+. +...+..+ .+...++.+.+..+....++-+.+-++|.. ||.- -.+.|..-
T Consensus 180 ~EA---~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 180 LEA---MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDI 252 (388)
T ss_pred HHH---HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHH
Confidence 432 22222222 223444556667788888888888888887 7532 13456666
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcchHHHHHHHHHHHHH
Q 005115 425 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYE 502 (714)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~-~~~~~l~DyA~li~all~Lye 502 (714)
++..++ ...+..|+++++-..++-||++.|+++-++ .+|.+ ...+.+++++..|.+++.|++
T Consensus 253 a~~~~~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~ 316 (388)
T COG2942 253 ARRRGR----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAE 316 (388)
T ss_pred HHHhch----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHh
Confidence 666665 678999999999999999999999888874 56765 456889999999999999999
Q ss_pred HcC-ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc
Q 005115 503 FGS-GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 544 (714)
Q Consensus 503 aTg-d~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~ 544 (714)
.|+ ++.|.++..++.+.+..+|.|++.|.+|+.-..+..++.
T Consensus 317 ~~~~~~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~~ 359 (388)
T COG2942 317 TTGARERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVLL 359 (388)
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCceec
Confidence 999 999999999999999999999999999987655554443
No 11
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.42 E-value=3.3e-13 Score=126.56 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc-cHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p-~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||+||++|++++|+||+|++++|++||.|++|.|... .... .| .|+|+++|++|+|+++..
T Consensus 30 f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~---------~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 30 HHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP---------DG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred EeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc---------cC-cccCeEEEECCCCCCccc
Confidence 58999999999999999999999999999999999976431 1110 23 589999999999998744
No 12
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-11 Score=140.51 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=130.0
Q ss_pred CCCC-chhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeec
Q 005115 240 VPHF-EKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWT 317 (714)
Q Consensus 240 vPHF-EKMLyD-NA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt 317 (714)
.|+- +|+|-| |++||.+++.|+++++++.|.++|+++.+||.++|+.. .+.+.-
T Consensus 401 ~P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~---------------------- 456 (667)
T COG1331 401 QPSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY---------------------- 456 (667)
T ss_pred CCCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee----------------------
Confidence 3444 588888 99999999999999999999999999999999999864 333310
Q ss_pred hHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 005115 318 SKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVR 397 (714)
Q Consensus 318 ~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R 397 (714)
+.|..
T Consensus 457 --------------------------------------~~G~a------------------------------------- 461 (667)
T COG1331 457 --------------------------------------RGGEA------------------------------------- 461 (667)
T ss_pred --------------------------------------ecCcc-------------------------------------
Confidence 11110
Q ss_pred hcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec
Q 005115 398 SKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR 477 (714)
Q Consensus 398 ~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~ 477 (714)
-....++|+ |++|+||..+|+++++ .+||+.|+++++-+..+|||++ |+|+.+..
T Consensus 462 --~~~g~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~ 516 (667)
T COG1331 462 --AVAGLLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPS 516 (667)
T ss_pred --cccccchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCC
Confidence 023356777 9999999999999988 7999999999999999999987 56776543
Q ss_pred CCC--------CCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005115 478 NGP--------SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 524 (714)
Q Consensus 478 ~g~--------~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F 524 (714)
+++ .....+.+.||.+|.+|+.|..+|++.+|++.|.++++.+..+.
T Consensus 517 ~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 517 DSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 332 22357888999999999999999999999999999988875554
No 13
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.39 E-value=4.4e-13 Score=123.18 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=69.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCC-CCccccc-ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG-GTY 90 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p-~g~p~~~-~ty 90 (714)
.|++||++|++|.+++|+|++|.++||+|||.+++|.++ |+..+ +. . ..+..|+|+.+|++| +|+++.. .+|
T Consensus 24 ~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~-~~---~-~~~~~~~P~~~~i~~~~g~~l~~~~G~ 97 (114)
T cd02958 24 LQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQR-FL---Q-SYKVDKYPHIAIIDPRTGEVLKVWSGN 97 (114)
T ss_pred EecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHH-HH---H-HhCccCCCeEEEEeCccCcEeEEEcCC
Confidence 489999999999999999999999999999999999986 44322 11 1 126789999999999 8999866 467
Q ss_pred cCCCCCCCCccHHHHHHHHH
Q 005115 91 FPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 91 ~p~~~~~~~~~f~~~L~~i~ 110 (714)
.+++ .|++.|+++.
T Consensus 98 ~~~~------~f~~~L~~~~ 111 (114)
T cd02958 98 ITPE------DLLSQLIEFL 111 (114)
T ss_pred CCHH------HHHHHHHHHH
Confidence 7776 5777777653
No 14
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.25 E-value=6.6e-12 Score=108.62 Aligned_cols=59 Identities=31% Similarity=0.474 Sum_probs=50.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 80 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p 80 (714)
.+++||+||+.|++++|++|+|.++++++||+|+||.+++......++ .|+|+++|++|
T Consensus 24 f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---------~~~P~~~~ldp 82 (82)
T PF13899_consen 24 FGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---------QGYPTFFFLDP 82 (82)
T ss_dssp EETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---------CSSSEEEEEET
T ss_pred EECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---------ccCCEEEEeCC
Confidence 479999999999999999999999999999999999976544333331 56999999987
No 15
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.21 E-value=2.2e-11 Score=113.33 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc-------------cHHHHHHHHHHHhcCCCCcCceEEeC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-------------DVDKVYMTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p-------------~i~~~y~~~~q~~~g~~g~P~~vfl~ 79 (714)
.+++||+||++|+.+.++++++.+.++++|+.++||.++.+ ++.+.| ++.|+|+++|++
T Consensus 21 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~--------~v~~~Pt~~~~~ 92 (125)
T cd02951 21 FSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY--------RVRFTPTVIFLD 92 (125)
T ss_pred EeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc--------CCccccEEEEEc
Confidence 58999999999999999999999999999999999998753 334444 789999999999
Q ss_pred CC-Cccccc-ccccCCCCCCCCccHHHHHHHHH
Q 005115 80 PD-LKPLMG-GTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 80 p~-g~p~~~-~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
++ |+++.. .+|.+++ .|.++|+.+.
T Consensus 93 ~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 93 PEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred CCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 99 898754 3566543 6888887764
No 16
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.13 E-value=6.5e-11 Score=109.69 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=63.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.||+||+||++|+...++.+++.+ ++.+||.|.||.++.+ +...|+. ..+++|+++|++|+|+++...+ .
T Consensus 26 F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~~~------~g~~vPt~~f~~~~Gk~~~~~~--~ 95 (117)
T cd02959 26 IHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEFSP------DGGYIPRILFLDPSGDVHPEII--N 95 (117)
T ss_pred EeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhccc------CCCccceEEEECCCCCCchhhc--c
Confidence 689999999999999888888776 7889999999987544 3445511 1235999999999999974311 1
Q ss_pred CCCCCCCccHHHHHHHHHH
Q 005115 93 PEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 93 ~~~~~~~~~f~~~L~~i~~ 111 (714)
..+.+...+|.+.|+.|-+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 1122334578887776643
No 17
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.13 E-value=2.4e-09 Score=118.27 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=105.9
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecC-CC
Q 005115 404 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRN-GP 480 (714)
Q Consensus 404 ~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~--G~l~~~~~~-g~ 480 (714)
+.||. +.++.|+.+|++++++.+ ...++||+.|+++++++. ..||.+. |++++.-.+ ..
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 44666 889999999999999821 001399999999999999 7777663 788775211 01
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hcccccCCccccCCCCCCccccccccCCCCCCCChHH
Q 005115 481 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 559 (714)
Q Consensus 481 ~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~-~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~ns 559 (714)
....+-.--.+-++...++||++|+++.||++|+++.+.+.+ .++|+++|.+++....+..- .+.....-.--.+
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG 223 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQG 223 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHH
Confidence 111122234577889999999999999999999999999999 99998888888754211100 0011112223456
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 560 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 560 vaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
+++.++..|+.+|++. ..|+++|++++.+....
T Consensus 224 ~~l~a~~~Ly~~T~~~--~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 224 VFLGAAAYLYNATNDE--QTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Confidence 8999999999999751 28999999999987554
No 18
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.08 E-value=1.1e-10 Score=105.11 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCC-CCccccc-ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG-GTY 90 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p-~g~p~~~-~ty 90 (714)
.|++||++|+.|....++++++++.++++|+.++||.++.++....++ +. .+..++|+++|+++ +|+.+.. .+|
T Consensus 18 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---~~-~~i~~~Pti~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 18 FTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL---KR-FGVFGPPTYLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred EEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH---HH-cCCCCCCEEEEECCCCCCCCcccccc
Confidence 589999999999999999999999999899999999987543322221 11 27889999999999 8997754 466
Q ss_pred cCCC
Q 005115 91 FPPE 94 (714)
Q Consensus 91 ~p~~ 94 (714)
.+.+
T Consensus 94 ~~~~ 97 (104)
T cd02953 94 LTAD 97 (104)
T ss_pred cCHH
Confidence 6654
No 19
>smart00594 UAS UAS domain.
Probab=99.02 E-value=3.4e-10 Score=105.57 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc--cHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP--DVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p--~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
.|++||.+|++|.+++|+|++|.++||+|||.+++|.+... ++.+.| +..|+|+.+|++|+|
T Consensus 34 ~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~--------~~~~~P~~~~l~~~~ 97 (122)
T smart00594 34 LHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFY--------KLDSFPYVAIVDPRT 97 (122)
T ss_pred EeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhc--------CcCCCCEEEEEecCC
Confidence 48999999999999999999999999999999999987643 233333 678999999999997
No 20
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.95 E-value=2.6e-08 Score=107.14 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=124.7
Q ss_pred chhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCc
Q 005115 408 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 487 (714)
Q Consensus 408 Kilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l 487 (714)
-++....| ++.+|...++. ++ ++|++.|+++++++.++..+.+ ..+.+.++.....++.
T Consensus 80 dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGD---PALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhccc---cccccccCCCCCCccc
Confidence 45566666 45567778877 77 8999999999999998876532 2234444555567999
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 567 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Llr 567 (714)
+++|.++.+|+.+|++|+|++|++.|+++.+.+.++|++. .++++++...+. .....++|++-++.+|++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~-~~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD-DGGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC-CCCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 455665432211 123579999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005115 568 LASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 600 (714)
Q Consensus 568 L~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~ 600 (714)
++.++++ ++|++.++++++.+......+|.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 9999985 78999999999998876655554
No 21
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.93 E-value=7.7e-09 Score=113.84 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCC-chhHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHF-EKMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDY 279 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHF-EKMLyD-NA~ll~~y~~Ay~~t~d-~~y~~~A~~~~~f 279 (714)
++.++.+..+.+.+.. +++ .-.-||. -||+.. |+++|..|+.++++++. |.|.+.|...++|
T Consensus 473 e~~kkll~e~~e~L~~--aR~-------------kRPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~f 537 (786)
T KOG2244|consen 473 EKYKKLLGECREKLFD--ARL-------------KRPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANF 537 (786)
T ss_pred HHHHHHHHHHHHHHHH--Hhh-------------cCCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 4556666666666654 333 2356999 599999 99999999999999875 5999999999999
Q ss_pred HHHhccCCC-CceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCC
Q 005115 280 LRRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKG 358 (714)
Q Consensus 280 l~~~m~~p~-Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg 358 (714)
+.++|.++. +-|-... .|+ .+.|.+ +.
T Consensus 538 l~k~m~d~~eklliR~s---------------------------------------cY~-ga~g~v------------e~ 565 (786)
T KOG2244|consen 538 LPKDMIDVAEKLLIRGS---------------------------------------CYD-GASGRV------------EH 565 (786)
T ss_pred hhhhhhchhhhheeecc---------------------------------------ccc-CCCcce------------ec
Confidence 999998865 3222200 010 011211 11
Q ss_pred cceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhccc
Q 005115 359 KNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFN 438 (714)
Q Consensus 359 ~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~ 438 (714)
.| |.-+...|+||+ |++|.+|...|.+.++
T Consensus 566 ~n------------------------------------~~~~~~~FldDY------AFlI~gLLDlYea~~~-------- 595 (786)
T KOG2244|consen 566 SN------------------------------------RPSKAPAFLDDY------AFLISGLLDLYEAGGG-------- 595 (786)
T ss_pred cC------------------------------------CccccchhhhhH------HHHHHHHHHHHHccCc--------
Confidence 11 122345589999 9999999999999987
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH--------HHHHHHHHHHHHHcCChHHH
Q 005115 439 FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY--------AFLISGLLDLYEFGSGTKWL 510 (714)
Q Consensus 439 ~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~Dy--------A~li~all~LyeaTgd~~~L 510 (714)
.+||++|+++.+.-.+.||| +|+++-+-.+++......-+|+ +..+..|+.||.+++.+.|+
T Consensus 596 --------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl 665 (786)
T KOG2244|consen 596 --------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYL 665 (786)
T ss_pred --------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHH
Confidence 79999999999999999998 6777777665554444444444 67889999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 005115 511 VWAIELQNTQDELF 524 (714)
Q Consensus 511 ~~A~~L~~~~~~~F 524 (714)
++|.+|+..+.++.
T Consensus 666 ~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 666 NKAHRLLAVFSERL 679 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887765
No 22
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.82 E-value=3.4e-07 Score=99.74 Aligned_cols=153 Identities=21% Similarity=0.309 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC--CcchHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 491 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~-~g~~~~~~--~l~DyA 491 (714)
.|.+..|++++..+|| ++|++.|.+-+....++++|+++|.++|.+. .|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 4567789999999998 8999999999999999999999999999864 33322222 445889
Q ss_pred HHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 492 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 492 ~li~all~LyeaTgd-----~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
|++.|++++|+.+.+ +.+++.+.++++.+. .+.+ +.|.++....+ +. . ......|+.++++.+|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~-~~-~------~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDD-PD-P------GNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTT-TT-T------TS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCC-CC-C------CCcccHHHHHHHHHHHH
Confidence 999999999999855 678888888887754 4555 45655443322 11 1 12234789999999998
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 567 RLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 567 rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
+.-.. |-.+.+.|.+.|++.++.+...
T Consensus 261 ~gi~~-g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRL-GLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHT-TSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHc-CCCccHHHHHHHHHHHHHHHhC
Confidence 72221 2222478999999999988766
No 23
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.81 E-value=1.1e-09 Score=99.61 Aligned_cols=87 Identities=30% Similarity=0.390 Sum_probs=61.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHH-------------HHHHHHHHhcCCCCcCceEEeC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~-------------~y~~~~q~~~g~~g~P~~vfl~ 79 (714)
.+++||+||++|.++.++++++...++++|..|.++.++..+... .-.+..+.+ |+.|+|+++|++
T Consensus 12 F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~v~gtPt~~~~d 90 (112)
T PF13098_consen 12 FTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY-GVNGTPTIVFLD 90 (112)
T ss_dssp EE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT-T--SSSEEEECT
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc-CCCccCEEEEEc
Confidence 478999999999999999999999999999999999876432211 112234444 899999999999
Q ss_pred CCCccccc-ccccCCCCCCCCccHHHHH
Q 005115 80 PDLKPLMG-GTYFPPEDKYGRPGFKTIL 106 (714)
Q Consensus 80 p~g~p~~~-~ty~p~~~~~~~~~f~~~L 106 (714)
++|+++.. .+|.+++ .|+++|
T Consensus 91 ~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 91 KDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp TTSCEEEEEESS--HH------HHHHHH
T ss_pred CCCCEEEEecCCCCHH------HHHhhC
Confidence 99998854 4677765 566554
No 24
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.7e-08 Score=92.83 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=77.6
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-CCccHH--------HHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVD--------KVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-e~p~i~--------~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..+-|.+|..|.+++|+++++.+++-+||+.+.+|.+ +.|-+- --+.+..|.. ++.|+|+.||.+.+|+-
T Consensus 50 es~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf-~vrstPtfvFfdk~Gk~ 128 (182)
T COG2143 50 ESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF-AVRSTPTFVFFDKTGKT 128 (182)
T ss_pred cCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh-ccccCceEEEEcCCCCE
Confidence 4678999999999999999999999999999999975 333211 0122222222 78999999999999998
Q ss_pred ccc-ccccCCCCCCCCccHHHHHHHHHHHHhhcHH
Q 005115 85 LMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKKRD 118 (714)
Q Consensus 85 ~~~-~ty~p~~~~~~~~~f~~~L~~i~~~w~~~~~ 118 (714)
|.. .+|+||+ .|+-+|+.|++...++-.
T Consensus 129 Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~ 157 (182)
T COG2143 129 ILELPGYMPPE------QFLAVLKYVADGKYKDTK 157 (182)
T ss_pred EEecCCCCCHH------HHHHHHHHHHHHHHhhhc
Confidence 855 6999998 799999999987765544
No 25
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.66 E-value=2.8e-08 Score=115.64 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=66.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc--c-c
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM--G-G 88 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~--~-~ 88 (714)
..|++||++|++|++.+|+|++|.+.++ +|+.++||.++..+-.+.+++ -.|..|+|+++|+++||+++. . .
T Consensus 480 dF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~----~~~v~g~Pt~~~~~~~G~~i~~~r~~ 554 (571)
T PRK00293 480 DLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK----HYNVLGLPTILFFDAQGQEIPDARVT 554 (571)
T ss_pred EEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH----HcCCCCCCEEEEECCCCCCccccccc
Confidence 3699999999999999999999999996 699999999865322221211 127899999999999999852 2 3
Q ss_pred cccCCCCCCCCccHHHHHHHH
Q 005115 89 TYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 89 ty~p~~~~~~~~~f~~~L~~i 109 (714)
+|++++ .|.+.|+++
T Consensus 555 G~~~~~------~f~~~L~~~ 569 (571)
T PRK00293 555 GFMDAA------AFAAHLRQL 569 (571)
T ss_pred CCCCHH------HHHHHHHHh
Confidence 456544 577777765
No 26
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=8.7e-06 Score=88.60 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE-EEEecCCCCCCCCCcchH
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL-QHSFRNGPSKAPGFLDDY 490 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l-~~~~~~g~~~~~~~l~Dy 490 (714)
.=.++++-|++.++.+.+ ++..++-..+.+.+.+++++.+++.- +.....+.. +--.+.+
T Consensus 116 Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~--pl~sNp~ 176 (388)
T COG2942 116 YGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA--PLGSNPH 176 (388)
T ss_pred HHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC--ccCCCcc
Confidence 345788889998877654 56677777788888889998764311 111122222 2246788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 005115 491 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 567 (714)
Q Consensus 491 A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg---ff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Llr 567 (714)
+++.+|+|..|++|++..|+++|.+|++.+..+|.|.++|. ||+.... +....|. -+.+|.+.-.++..|++
T Consensus 177 MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~-p~~~frg----~~~ePGH~fEW~~Lll~ 251 (388)
T COG2942 177 MHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWN-PAHGFRG----RGIEPGHQFEWAWLLLD 251 (388)
T ss_pred hHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCC-cCCCccc----CCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999885 5654431 1111222 25679999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHH
Q 005115 568 LASIVAGSKSDYYRQNAEHSLAV 590 (714)
Q Consensus 568 L~~lt~~~~~~~y~e~A~~~l~~ 590 (714)
++.+.+. ......|++++..
T Consensus 252 ~a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 252 IARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHHhch---hHHHHHHHHHHHH
Confidence 9999885 4566677666655
No 27
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.42 E-value=2.8e-07 Score=88.35 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=51.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc-c
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG-G 88 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~-~ 88 (714)
..|++||++|+.|....- ++++.++. +||.|.||.++.+++.+.| ++.|+|+++|++++|+++.. .
T Consensus 26 ~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~--------~V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 26 EFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRY--------RVDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred EEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHc--------CCCCCCEEEEECCCCCEEEEEe
Confidence 368999999999986532 35555544 4777777766656666666 88999999999999998854 2
Q ss_pred cccC
Q 005115 89 TYFP 92 (714)
Q Consensus 89 ty~p 92 (714)
++.+
T Consensus 95 G~~~ 98 (142)
T cd02950 95 GLQP 98 (142)
T ss_pred CCCC
Confidence 3444
No 28
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.39 E-value=2.7e-07 Score=82.13 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=57.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-cc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TY 90 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-ty 90 (714)
..+++||++|+.|.... .++++.++.++..+++|.++.|++.+.| |..+.|+++|+. +|+.+... ++
T Consensus 19 ~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~~-~g~~v~~~~g~ 86 (97)
T cd02949 19 LYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFFK-DKELVKEISGV 86 (97)
T ss_pred EEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEEE-CCeEEEEEeCC
Confidence 35889999999998654 5688888888999999999999888877 789999999995 78887553 34
Q ss_pred cCC
Q 005115 91 FPP 93 (714)
Q Consensus 91 ~p~ 93 (714)
.++
T Consensus 87 ~~~ 89 (97)
T cd02949 87 KMK 89 (97)
T ss_pred ccH
Confidence 443
No 29
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.35 E-value=5.6e-07 Score=83.36 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCC---ccccc-cccc
Q 005115 16 HFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL---KPLMG-GTYF 91 (714)
Q Consensus 16 ~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g---~p~~~-~ty~ 91 (714)
+||.|| +++|.||+|+++||+|||.++.|.++... + .+.+.+ +..++|+.+|+.|.. +.+.. .+|.
T Consensus 31 ~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~eg----~-~la~~l-~~~~~P~~~~l~~~~~~~~vv~~i~G~~ 100 (116)
T cd02991 31 DTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKPEG----Y-RVSQAL-RERTYPFLAMIMLKDNRMTIVGRLEGLI 100 (116)
T ss_pred cHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCChHH----H-HHHHHh-CCCCCCEEEEEEecCCceEEEEEEeCCC
Confidence 489999 79999999999999999999999987532 2 222222 677999999995543 34433 3677
Q ss_pred CCCCCCCCccHHHHHHHHHH
Q 005115 92 PPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 92 p~~~~~~~~~f~~~L~~i~~ 111 (714)
+|+ .|++.|..+.+
T Consensus 101 ~~~------~ll~~L~~~~~ 114 (116)
T cd02991 101 QPE------DLINRLTFIMD 114 (116)
T ss_pred CHH------HHHHHHHHHHh
Confidence 776 57777776643
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.27 E-value=9.7e-07 Score=77.87 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=53.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||..|++|.... .++++.++..+..++||.++.+++.+.| +..|+|+++|+. +|+++.
T Consensus 18 ~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 18 DFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQPVD 80 (96)
T ss_pred EEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCEEee
Confidence 36899999999998653 5677777777888999999999988888 889999999997 898863
No 31
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.26 E-value=8e-05 Score=80.15 Aligned_cols=134 Identities=18% Similarity=0.070 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
+-++++|+++++++++ ++|++.|+++.+++.+++++.++| ++.+ .++.....++....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDGG-LLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCCC-ceEc-CCCCccCcccCCCcHHHH
Confidence 6678889999999998 899999999999999998765444 4432 233334557888889999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
.+++.+|++|+|++|++.|+++.+.+...++.. - ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~--~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYAN--P----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccC--c----------------------cccCCcHhHHHHHHhhcccccC
Confidence 999999999999999999999988887654211 0 0122334445667777888875
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 005115 575 SKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 575 ~~~~~y~e~A~~~l~~~~~ 593 (714)
++|++.+.++...+..
T Consensus 260 ---~~~~~~~~~~~~~~~~ 275 (321)
T cd04791 260 ---ALYKAAAERLALYLIA 275 (321)
T ss_pred ---hHHHHHHHHHHHHhcc
Confidence 7788988877666543
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.24 E-value=1.9e-06 Score=79.45 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+|+||+.|++|+.. | +++++.+.....-+|||.|+.|++.+.| |..+.|+.+|+. +|+.+..
T Consensus 21 F~A~WCgpCk~m~P~-l--e~la~~~~~~v~f~kVDvD~~~~la~~~--------~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 21 FGRDWDPVCMQMDEV-L--AKIAEDVSNFAVIYLVDIDEVPDFNKMY--------ELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred EECCCChhHHHHHHH-H--HHHHHHccCceEEEEEECCCCHHHHHHc--------CCCCCCEEEEEE-CCEEEEE
Confidence 689999999999853 2 3345444433346899999999999999 899999998887 8888754
No 33
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.19 E-value=0.00023 Score=82.37 Aligned_cols=243 Identities=18% Similarity=0.181 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEE-Ee------cCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YS------VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICR 274 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~R-Ys------vD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~ 274 (714)
++++++.+...++.+.. ..+ ..||.- |. .+..|.. ---.+|...-|+.+..++|+.||++..+++|.
T Consensus 78 D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~ 151 (520)
T PF07944_consen 78 DPELKAKADEIVDELAA--AQQ--PDGYLGTYPEERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVAT 151 (520)
T ss_pred CHHHHHHHHHHHHHHHH--hcc--CCceecccccccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHH
Confidence 57788888888888766 333 344332 22 2334544 12348999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCC
Q 005115 275 DILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHN 354 (714)
Q Consensus 275 ~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~ 354 (714)
+.++|+.+.+..-+ .+.
T Consensus 152 k~ad~~~~~~~~~~-----------------------------~~~---------------------------------- 168 (520)
T PF07944_consen 152 KLADWVYRRLSRLG-----------------------------PEP---------------------------------- 168 (520)
T ss_pred HHHHHHHHHhccCC-----------------------------HHH----------------------------------
Confidence 99999954332100 000
Q ss_pred ccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhh
Q 005115 355 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAES 434 (714)
Q Consensus 355 ~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~ 434 (714)
++..+ .+.+ +-|..+|+++|+++|+
T Consensus 169 ---~~~~~-----------------------------------------------~~~~-~~i~~~l~~LY~~Tgd---- 193 (520)
T PF07944_consen 169 ---GQKMG-----------------------------------------------YPEH-GGINEALVRLYEITGD---- 193 (520)
T ss_pred ---hhccc-----------------------------------------------cccc-chHHHHHHHHHHHhCC----
Confidence 00000 0011 3455889999999998
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCC--CCCCCCcchHHHHHHHHHHHHHHcCChHHHH
Q 005115 435 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGP--SKAPGFLDDYAFLISGLLDLYEFGSGTKWLV 511 (714)
Q Consensus 435 ~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~--~~~~~~l~DyA~li~all~LyeaTgd~~~L~ 511 (714)
++||+.|+...+ ...+++. +..+... ..+. ....+..=-.+++..|.+++|+.|||++|++
T Consensus 194 ------------~~yL~lA~~f~~---~~~~~~~-~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~ 257 (520)
T PF07944_consen 194 ------------ERYLDLAEYFVD---QRGFDPY-DLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLD 257 (520)
T ss_pred ------------HHHHHHHHHHHH---HhCCCCC-chhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHH
Confidence 899999977664 3344430 0011000 0000 0111222234678899999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCccccCCCCCCccccccc--cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005115 512 WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK--EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 589 (714)
Q Consensus 512 ~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k--~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~ 589 (714)
.++.+++.+.++-.= -+||.-.... .+....... ......+-.+.--++....+|..+||+ ..|.+.+|+++=
T Consensus 258 a~~~~w~~v~~~~~y-~tGg~g~~~~-~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~ly 332 (520)
T PF07944_consen 258 AAENFWDNVVRHHMY-ATGGIGSDHE-GEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERALY 332 (520)
T ss_pred HHHHHHHHHHhcCee-ccCCCcCCCC-CccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHHHh
Confidence 999999998765321 2454443310 011100000 011113333333355566777888886 678888877653
No 34
>PRK10996 thioredoxin 2; Provisional
Probab=98.10 E-value=4.1e-06 Score=79.97 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=54.8
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||+.|+.|.. .| .++++.++.++..++||.++.|++.+.| ++.|+|+.+|+. +|+++..
T Consensus 58 ~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 58 DFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred EEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCEEEEEE-CCEEEEE
Confidence 368999999999986 56 4477888889999999999999998888 899999998885 8998744
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.07 E-value=4.1e-06 Score=73.86 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=52.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.. .| .++++.++.++..++||.++.|++.+.| +..+.|+++|+. +|+.+..
T Consensus 21 f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~-~g~~~~~ 83 (97)
T cd02984 21 FWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTFVFFR-NGTIVDR 83 (97)
T ss_pred EECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEEEEEE-CCEEEEE
Confidence 58999999999986 45 3566666778999999999999988888 889999999995 8998744
No 36
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=98.07 E-value=0.00072 Score=72.42 Aligned_cols=257 Identities=17% Similarity=0.156 Sum_probs=164.2
Q ss_pred CCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHH-HHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHH
Q 005115 174 APKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTL-QCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQ 252 (714)
Q Consensus 174 apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL-~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ 252 (714)
.=-+|....|.=+.+.+..++ +++.++.+.... ..|..| ||-+|.+|.- +
T Consensus 33 ~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~~~--------g~~~~~id~i------------~-- 83 (357)
T COG4225 33 RWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQIDEG--------GLPPRNIDHI------------A-- 83 (357)
T ss_pred cccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhccC--------CCCccchhhh------------c--
Confidence 334667777776777776654 366776655544 444443 3666665521 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHH
Q 005115 253 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILF 332 (714)
Q Consensus 253 ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~ 332 (714)
.-..+.--|..|+||.|+..|.+..+|+..+++-.+|||.+-.
T Consensus 84 ~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~------------------------------------- 126 (357)
T COG4225 84 AGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV------------------------------------- 126 (357)
T ss_pred cCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc-------------------------------------
Confidence 2223455688899999999999999999999987778885410
Q ss_pred HHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhc
Q 005115 333 KEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVS 412 (714)
Q Consensus 333 ~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~ 412 (714)
+| ++ .. -.|.-
T Consensus 127 ---------~~-------------p~----------------------Q~---------------------W~DtL---- 137 (357)
T COG4225 127 ---------KY-------------PH----------------------QM---------------------WLDTL---- 137 (357)
T ss_pred ---------Cc-------------hh----------------------Hh---------------------hhcch----
Confidence 01 00 00 01111
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCC----CCCC---
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGP----SKAP--- 484 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~-~g~----~~~~--- 484 (714)
-|...-+++.++++++ ++|++-+..-..-..+++.||++|.+||.|. +|. ....
T Consensus 138 --~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~ 199 (357)
T COG4225 138 --YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEP 199 (357)
T ss_pred --hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCc
Confidence 3445568889999998 8999999999888899999999999999975 331 1111
Q ss_pred CCc-chHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChH
Q 005115 485 GFL-DDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN 558 (714)
Q Consensus 485 ~~l-~DyA~li~all~LyeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~n 558 (714)
.|+ -..+|++.++.++.+.-.+. .+.+.-..+.+.+.+ .-| ++|-|+..- +++ |+ .-..+-|+.
T Consensus 200 ~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiL-Dd~----~~---~sy~EsSaS 269 (357)
T COG4225 200 AFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTIL-DDG----RP---GSYLESSAS 269 (357)
T ss_pred eeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhh-ccC----CC---CCchhhhHH
Confidence 222 25678888888888875433 234444455555543 335 566555432 221 11 123567888
Q ss_pred HHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005115 559 SVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKDM 598 (714)
Q Consensus 559 svaa~~Llr---L~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~ 598 (714)
+..+-+|++ ++.+. ++|...+++.++.+.+.+...
T Consensus 270 a~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 270 AGFAYALLKGINLGILD-----PEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred HHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhcccc
Confidence 888888887 55443 457788888888877766543
No 37
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.91 E-value=0.00067 Score=74.03 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=96.8
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH-HHHHHHHH
Q 005115 422 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDL 500 (714)
Q Consensus 422 a~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~-li~all~L 500 (714)
..+++.+++ ++|++.+.++++++.+...+...|++.| ......-.+-|-.+ .+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~----~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWH----NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBEC----TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCcccc----CCCCCCceeeccccccHHHHHHH
Confidence 347788887 8999999999999988887755688876 11112233455554 77888889
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 005115 501 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 580 (714)
Q Consensus 501 yeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y 580 (714)
++.|||++|++.|.+-+....++.+|+++|-|+-...... ..+..+..=.-||+=++..|.++..++... ...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~-----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~--~~~ 209 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQG-----YADWSDSFWSRGNGWAIYGLAEVLEYLPED--HPE 209 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTS-----SSTTST--BHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCC-----CcCcccccCcchhhHHHHHHHHHHHHhcch--hhh
Confidence 9999999999999999999999999999887764321110 000000001226777888888888887541 233
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005115 581 RQNAEHSLAVFETRLKD 597 (714)
Q Consensus 581 ~e~A~~~l~~~~~~i~~ 597 (714)
+....++++.+...+.+
T Consensus 210 ~~~~~~~~~~~~~~l~~ 226 (336)
T PF07470_consen 210 RDELLEIAKKLADALAR 226 (336)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444445555444544
No 38
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.91 E-value=1.3e-05 Score=71.65 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||..|+.|.. .|+ ++++.++.++.-++||.++.+++.+.| +..++|+.+++ ++|+++
T Consensus 25 f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 25 FYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred EECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEEEEE-cCCCCc
Confidence 68999999999985 444 477888878888899999999888877 88999999888 688765
No 39
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.90 E-value=1.7e-05 Score=75.95 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=51.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEE-EEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc-cccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK-PLMGGT 89 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~-vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~-p~~~~t 89 (714)
..+++||+.|+.|+. .| +++++.+. +++. +|||.|+.|++.+.| +..+.|+++|+-.+|+ .+..++
T Consensus 29 dF~A~WCgpCk~m~p-~l--~~la~~~~-~~~~~~kVDVDe~~dla~~y--------~I~~~~t~~~ffk~g~~~vd~~t 96 (142)
T PLN00410 29 RFGHDWDETCMQMDE-VL--ASVAETIK-NFAVIYLVDITEVPDFNTMY--------ELYDPCTVMFFFRNKHIMIDLGT 96 (142)
T ss_pred EEECCCChhHHHHHH-HH--HHHHHHcC-CceEEEEEECCCCHHHHHHc--------CccCCCcEEEEEECCeEEEEEec
Confidence 368999999999985 33 45776654 4455 999999999999999 7788888887777888 665544
No 40
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.89 E-value=2.3e-05 Score=68.82 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=53.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||+.|+.|... | .++++.++.+...++||.++.+.+.+.| |..++|+.+|+ ++|++..
T Consensus 20 ~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 20 DFWAPWCGPCKMIAPI-L--EELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTLLLF-KNGKEVD 82 (101)
T ss_pred EEECCCCHHHHHhCHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEEEEE-eCCcEee
Confidence 3689999999999854 5 4777788888999999999998887777 88899999999 7888763
No 41
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.89 E-value=1.6e-05 Score=90.38 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=58.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|||||--||+||+.+|+|+.|+..+ ++.|..++|..++ |.+.+.... .|.-|.|+++|..++|++.-.
T Consensus 480 DfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~-----~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 480 DFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKR-----LGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred eeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHH-----cCCCCCCEEEEECCCCCcCcC
Confidence 469999999999999999999999877 7999999998765 554443322 278899999999999997755
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.86 E-value=1.6e-05 Score=71.50 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++||..|+.|.. .|+ ++++.++. ++...++|.++.|++.+.| +..++|+.+|+. +|.+
T Consensus 22 f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~~~Pt~~l~~-~~~~ 84 (104)
T cd03000 22 FYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVRGYPTIKLLK-GDLA 84 (104)
T ss_pred EECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCccccEEEEEc-CCCc
Confidence 58999999999996 454 56666643 4677789999988888877 889999999994 4433
No 43
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.84 E-value=1.4e-05 Score=73.06 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||..|++|... |+ ++++.+.. ++.-++||.++.+++.+.| |..++|+++|+. +|+....
T Consensus 31 F~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~--------~V~~~Pt~~i~~-~g~~~~~ 94 (111)
T cd02963 31 ITSDWCFSCIHIEPV-WK--EVIQELEPLGVGIATVNAGHERRLARKL--------GAHSVPAIVGII-NGQVTFY 94 (111)
T ss_pred EECCccHhHHHhhHH-HH--HHHHHHHhcCceEEEEeccccHHHHHHc--------CCccCCEEEEEE-CCEEEEE
Confidence 699999999999864 54 57777754 5777899999888887777 899999999885 8887643
No 44
>PHA02125 thioredoxin-like protein
Probab=97.83 E-value=2.8e-05 Score=66.12 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|... |+ + + .|..++||.++.+++.+.| ++.++|+.+ +|+.+.
T Consensus 5 f~a~wC~~Ck~~~~~-l~--~----~--~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~~ 57 (75)
T PHA02125 5 FGAEWCANCKMVKPM-LA--N----V--EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTLD 57 (75)
T ss_pred EECCCCHhHHHHHHH-HH--H----H--hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEEE
Confidence 589999999999864 32 1 1 3677899999999999888 889999977 577653
No 45
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.82 E-value=2e-05 Score=70.23 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=48.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||+.|+.|... |+ ++++.++ .++.-.+||.++.+++.+.| +..++|+++|+ ++|++
T Consensus 22 ~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 22 EFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQEPGLSGRF--------FVTALPTIYHA-KDGVF 83 (101)
T ss_pred EEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCCHhHHHHc--------CCcccCEEEEe-CCCCE
Confidence 3689999999999864 55 4455554 35788899999999988888 78999999887 78874
No 46
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.81 E-value=7.9e-05 Score=76.84 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||+.|+.|... | +++++.+...+.-.+||.++.+++.+.| +..|+|+++|+. +|+++
T Consensus 59 FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 59 FYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred EECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEEE
Confidence 699999999999976 4 5678888777667789999999988888 899999999998 78876
No 47
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.80 E-value=3.5e-05 Score=68.04 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=51.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++||+.|+.|.. .| .++++.+.. ++..+++|.++.+++.+.| |..++|+.+|+.+++.+
T Consensus 20 f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 20 FYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFPTIKFFPKGKKP 82 (102)
T ss_pred EECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCCEEEEecCCCcc
Confidence 68999999999974 45 457777776 6899999999998888777 78899999999988764
No 48
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.80 E-value=2.3e-05 Score=66.85 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=45.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..+++||++|+.|... + .++++.++..+-.++||.++.+++.+.| |..|.|+.++ +|+..
T Consensus 5 ~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~~ 64 (82)
T TIGR00411 5 LFTSPTCPYCPAAKRV-V--EEVAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDVE 64 (82)
T ss_pred EEECCCCcchHHHHHH-H--HHHHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEEE
Confidence 3578999999999864 2 2234445666777899999999888777 8889999887 67643
No 49
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.80 E-value=1.9e-05 Score=76.72 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
..|++||..|+.|.. .|+ ++++.++ .++..++||.++.|++.+.|. ++.-.++.|+|+.+|+. +|+++...
T Consensus 53 ~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~PT~ilf~-~Gk~v~r~ 124 (152)
T cd02962 53 EFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQLPTIILFQ-GGKEVARR 124 (152)
T ss_pred EEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCCCEEEEEE-CCEEEEEE
Confidence 479999999999985 344 3555565 458899999999999988882 11112345599988885 99999654
No 50
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.78 E-value=3.7e-05 Score=68.87 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=50.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||..|+.|.. .| .++++.++....-++||.++.+++.+.| |..++|+.+|+.+.|++.
T Consensus 25 ~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 25 DFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTIRLYPGNASKY 87 (104)
T ss_pred EEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEEEEEcCCCCCc
Confidence 368999999999974 33 3466666666777899999998888777 899999999998765655
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.76 E-value=4.4e-05 Score=66.45 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=52.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l--n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+.|... | .++++.+ +.++..++||.++.+.+.+.| |+.++|+.+++.++|+..
T Consensus 22 f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~~~~~~~~ 85 (101)
T cd02961 22 FYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYPTIKLFPNGSKEP 85 (101)
T ss_pred EECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCCEEEEEcCCCccc
Confidence 578999999999864 4 3577778 688999999999988888888 889999999999886443
No 52
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.75 E-value=3.7e-05 Score=69.16 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=47.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..||+||..|+.|... | .++++.++.. ...++||.| .+++.+.| +..+.|+.+|+ .+|+++..
T Consensus 23 ~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 23 DVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEAD-TIDTLKRY--------RGKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred EEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc--------CCCcCcEEEEE-ECCEEEEE
Confidence 4799999999999864 5 4466666543 456778888 56777777 88999987777 48987744
No 53
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.72 E-value=4.4e-05 Score=67.82 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||++|+.|.... .++++.+. .+++.+++|.++ .+.+.+.| |..++|+.+|.. +|+++
T Consensus 23 ~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 23 MFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY--------NVKGFPTFKYFE-NGKFV 88 (104)
T ss_pred EEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC--------CCccccEEEEEe-CCCee
Confidence 36899999999998664 25566665 668888999887 66666666 788999977664 77765
No 54
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4e-05 Score=73.35 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=54.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc-
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG- 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~- 87 (714)
.+||.||..|+.|... +.++.+ -.|-..|||.||.|++...| ++...|+++++. +|++.-.
T Consensus 67 dF~A~WCgPCk~l~P~------l~~~~~~~~g~~k~~kvdtD~~~ela~~Y--------~I~avPtvlvfk-nGe~~d~~ 131 (150)
T KOG0910|consen 67 DFHAEWCGPCKMLGPI------LEELVSEYAGKFKLYKVDTDEHPELAEDY--------EISAVPTVLVFK-NGEKVDRF 131 (150)
T ss_pred EEecCcCccHhHhhHH------HHHHHHhhcCeEEEEEEccccccchHhhc--------ceeeeeEEEEEE-CCEEeeee
Confidence 3699999999999854 444443 47899999999999999999 889999998887 7888733
Q ss_pred ccccCCC
Q 005115 88 GTYFPPE 94 (714)
Q Consensus 88 ~ty~p~~ 94 (714)
.++.|++
T Consensus 132 vG~~~~~ 138 (150)
T KOG0910|consen 132 VGAVPKE 138 (150)
T ss_pred cccCCHH
Confidence 4667764
No 55
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.70 E-value=3.9e-05 Score=68.00 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=49.8
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||..|+.|.. .|+ ++++.+.. ++..++||.++.+++.+.| +..++|+.+|+ ++|++.
T Consensus 22 ~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 22 KFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred EEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcCCEEEEE-eCCCee
Confidence 368999999999975 454 35666654 7889999999998887777 78999999999 678765
No 56
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.70 E-value=5.9e-05 Score=68.24 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=48.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc------ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~------~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||..|+.|... |+ ++++.+++ ++.-++||.++.+++.+.| |+.++|+++|+ ++|+.
T Consensus 24 ~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 24 NFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY--------RINKYPTLKLF-RNGMM 90 (108)
T ss_pred EEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC--------CCCcCCEEEEE-eCCcC
Confidence 4689999999999864 44 45555543 3677899999998888888 89999999888 57874
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.67 E-value=5.9e-05 Score=68.01 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=45.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc---cHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p---~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..+++||..|+.|.. .|+ ++++.+ .+.+-++||.++.+ ++.+.| ++.|+|+.+|+ .+|+.+..
T Consensus 21 ~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~l~~~~--------~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 21 EFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTMELCRRE--------KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred EEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHHHHHHc--------CCCcCCEEEEE-eCCeEEEE
Confidence 368999999999973 332 234444 46778999998875 444444 88999998887 79998743
No 58
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.67 E-value=0.00011 Score=66.21 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=47.8
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
..|++||..|+.|... |+ ++++.++..+.-++||.++ .+++.+.| +..|+|+.+|+.+.+
T Consensus 24 ~f~a~wC~~C~~~~~~-~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 24 EFYAPWCGHCKNLKPE-YA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRPPK 85 (109)
T ss_pred EEECCCCHHHHhhChH-HH--HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeCCC
Confidence 4699999999999864 43 4777787766667777776 77777777 889999999998886
No 59
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.67 E-value=5.5e-05 Score=62.31 Aligned_cols=61 Identities=23% Similarity=0.161 Sum_probs=44.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
.+++||++|+.|.+- + .++++ .+.++-..++|.++.+++.+.| |..+.|+.+| +|+.++.|
T Consensus 6 f~~~~C~~C~~~~~~-l--~~l~~-~~~~i~~~~id~~~~~~l~~~~--------~i~~vPti~i---~~~~~~~g 66 (67)
T cd02973 6 FVSPTCPYCPDAVQA-A--NRIAA-LNPNISAEMIDAAEFPDLADEY--------GVMSVPAIVI---NGKVEFVG 66 (67)
T ss_pred EECCCCCCcHHHHHH-H--HHHHH-hCCceEEEEEEcccCHhHHHHc--------CCcccCEEEE---CCEEEEec
Confidence 478999999998743 2 23332 2446777888998888887777 8889999866 56766544
No 60
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.67 E-value=6.9e-05 Score=68.96 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||..|+.|+. .| +++++.+ ++ -+-.|||.+|-|++.+.| +....|+++|+- +|+.+
T Consensus 21 F~a~WC~pCk~mdp-~l--~ela~~~-~~~~~f~kVDVDev~dva~~y--------~I~amPtfvffk-ngkh~ 81 (114)
T cd02986 21 FGRDEDAVCLQLDD-IL--SKTSHDL-SKMASIYLVDVDKVPVYTQYF--------DISYIPSTIFFF-NGQHM 81 (114)
T ss_pred EeCCCChhHHHHHH-HH--HHHHHHc-cCceEEEEEeccccHHHHHhc--------CceeCcEEEEEE-CCcEE
Confidence 58999999999985 33 3455544 45 668899999999999999 777899999765 66755
No 61
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.67 E-value=4.2e-05 Score=70.61 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=48.6
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHH-HHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~-~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
..||+||+.|+.|.. .|+ ++++.++....-++||.++.+++. +.| +..|+|+.++. .+|+
T Consensus 35 ~FyA~WC~~Ck~l~p-~~~--~la~~~~~~v~~~~Vd~d~~~~l~~~~~--------~I~~~PTl~lf-~~g~ 95 (113)
T cd03006 35 MYYAPWDAQSQAARQ-EFE--QVAQKLSDQVLFVAINCWWPQGKCRKQK--------HFFYFPVIHLY-YRSR 95 (113)
T ss_pred EEECCCCHHHHHHHH-HHH--HHHHHhcCCeEEEEEECCCChHHHHHhc--------CCcccCEEEEE-ECCc
Confidence 368999999999985 343 688888777677999999998887 467 78899999888 4666
No 62
>PRK09381 trxA thioredoxin; Provisional
Probab=97.64 E-value=6.6e-05 Score=67.91 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=51.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||+.|+.|... |+ ++++.++.++.-++||.++.+.+.+.| +..++|+++|+ ++|+++..
T Consensus 27 ~f~~~~C~~C~~~~p~-~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 27 DFWAEWCGPCKMIAPI-LD--EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred EEECCCCHHHHHHhHH-HH--HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCCeEEEE
Confidence 3689999999999843 33 566667777778899999999888777 88999999999 69998743
No 63
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.62 E-value=0.0023 Score=64.25 Aligned_cols=144 Identities=18% Similarity=0.224 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCC
Q 005115 414 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 485 (714)
Q Consensus 414 Nal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~-g-----~~--~~~~ 485 (714)
+|.+|+.|++|+.+++| ++||++|.++.+...-..- .|++...+.+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~~---~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPVE---EGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChHh---hCCeeEEecCCcEeEeecCCCCCCE
Confidence 47789999999999998 8999999999988764432 3555444333 2 11 2235
Q ss_pred CcchHHHHHHHHHHHHHHcCChHHH---HHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 005115 486 FLDDYAFLISGLLDLYEFGSGTKWL---VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 562 (714)
Q Consensus 486 ~l~DyA~li~all~LyeaTgd~~~L---~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa 562 (714)
.|+.+.+.+.||-+++..|++.+.. +...+-++.++..| |...+.+|+-..- .. .....-+-+.=..+.+
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~----~~--~~~~~~a~~~YH~lHi 165 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHF----TL--GNAPNIARWDYHRLHI 165 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcccc----cc--ccCcCcCcchHHHHHH
Confidence 7899999999999999999987654 44445555555444 6544456663210 00 0000112233445788
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHH
Q 005115 563 INLVRLASIVAGSKSDYYRQNAEH 586 (714)
Q Consensus 563 ~~LlrL~~lt~~~~~~~y~e~A~~ 586 (714)
..|..|+.+|++ +.+++.|++
T Consensus 166 ~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 166 QQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHhcCC---HHHHHHHHH
Confidence 889999999985 777777754
No 64
>PHA02278 thioredoxin-like protein
Probab=97.61 E-value=6.6e-05 Score=68.12 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=43.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC----ccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~----p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.||+||+.|+.|... |+ ++++.++.....++||.++. +++.+.| +..|+|+.+|+. +|+.+..
T Consensus 21 F~A~WCgpCk~m~p~-l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--------~I~~iPT~i~fk-~G~~v~~ 87 (103)
T PHA02278 21 ITQDNCGKCEILKSV-IP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF--------DIMSTPVLIGYK-DGQLVKK 87 (103)
T ss_pred EECCCCHHHHhHHHH-HH--HHHhhhcCCceEEEEECCccccccHHHHHHC--------CCccccEEEEEE-CCEEEEE
Confidence 689999999999952 22 13333333322466666653 6788777 889999998887 6887744
No 65
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.59 E-value=0.0062 Score=74.48 Aligned_cols=251 Identities=19% Similarity=0.257 Sum_probs=147.9
Q ss_pred cCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCCccccCccc
Q 005115 234 VDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGATR 307 (714)
Q Consensus 234 vD~~W~vPHFEKMLyD-NA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p-----~Ggfysa~DADs~~~~~~~~ 307 (714)
.+..|.+-.-.=-||+ -|=++.+|+..+++|+++.|.+.|+++++.+...+... +-|+|+
T Consensus 476 ~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~-------------- 541 (825)
T cd04792 476 DGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS-------------- 541 (825)
T ss_pred CCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe--------------
Confidence 3445765445667888 89999999999999999999999999999988766432 112332
Q ss_pred ccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHH
Q 005115 308 KKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILG 387 (714)
Q Consensus 308 ~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~ 387 (714)
|.-|-.|+. ..+...++ .+++.+.+.
T Consensus 542 G~aGi~~~L--~~l~~~~~----------------------------------------------------~~~~~~~a~ 567 (825)
T cd04792 542 GLGGILYAL--THLGKLLK----------------------------------------------------DDRLLNLAK 567 (825)
T ss_pred chhHHHHHH--HHHHHHcC----------------------------------------------------CHHHHHHHH
Confidence 111211111 11111111 011112222
Q ss_pred HHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 005115 388 ECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDE 467 (714)
Q Consensus 388 ~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~ 467 (714)
.+.+.+.+.-. +...--++..+.| ++.+|+.+++.+++ +.+++.|+++++++.+.....
T Consensus 568 ~~~~~l~~~~~----~~~~~D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~~ 626 (825)
T cd04792 568 EILDLIDELIE----KDEKLDFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASNE 626 (825)
T ss_pred HHHHHHHHhhc----cccCCCEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhhc
Confidence 22222222111 1111123444433 56678888988877 789999999999998765432
Q ss_pred CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccc
Q 005115 468 QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 547 (714)
Q Consensus 468 ~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k 547 (714)
+.+ .+ ..+.....++....+=.+.+|+.+|++|+|++|++.|.++.+.....| +++.+.|. .......
T Consensus 627 ~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~--~~~~~~~----- 694 (825)
T cd04792 627 DGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWP--RKDGNSF----- 694 (825)
T ss_pred cCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCC--CcCcCCC-----
Confidence 222 21 122234558899999999999999999999999999999999776555 33333332 1110000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 005115 548 EDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 591 (714)
Q Consensus 548 ~~~D~a~PS~nsvaa~~LlrL~~l--t~~~~~~~y~e~A~~~l~~~ 591 (714)
...--.|.+=.+.++++++.+ +++ +.+.+.+++++...
T Consensus 695 ---~~~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 695 ---SAAWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred ---CCcccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 011122444455677777777 342 56666666666554
No 66
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.56 E-value=0.019 Score=61.73 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=101.9
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch
Q 005115 410 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD 489 (714)
Q Consensus 410 lt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~D 489 (714)
++.+-| ++.+|..+++.+++ +.+.+.+.++++++.+......++..+...........++...
T Consensus 98 ~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG 160 (343)
T cd04434 98 LSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHG 160 (343)
T ss_pred eechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhh
Confidence 343333 56677788887766 6789999999999988775433332211111112234588888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 005115 490 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 569 (714)
Q Consensus 490 yA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~ 569 (714)
.+=.+.+|+.+++.+.++.+.+.++.+.......+ +.+++.++...... .......--.|++=.+..+++++
T Consensus 161 ~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~~ 232 (343)
T cd04434 161 LAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLAY 232 (343)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHHH
Confidence 89999999999999988888888888887766555 44444343211111 01111223445556777888999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 570 SIVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 570 ~lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
.++++ +.+.+.+++++........
T Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 233 KALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 99885 6788888888776655543
No 67
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.54 E-value=0.00016 Score=65.84 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCC-ccHHH-HHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDK-VYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~-p~i~~-~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++||..|+.|... | .++++.+.. +|+..+||.++. .++.+ .| +..++|+.+|+.+++..
T Consensus 28 f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~--------~v~~~Pti~~f~~~~~~ 91 (109)
T cd02993 28 LYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQREFAKEEL--------QLKSFPTILFFPKNSRQ 91 (109)
T ss_pred EECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccchhhHHhhc--------CCCcCCEEEEEcCCCCC
Confidence 689999999999876 5 357877875 588899999873 33332 34 78899999999887653
No 68
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.52 E-value=0.00011 Score=67.47 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC---Cccccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD---LKPLMGGT 89 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~---g~p~~~~t 89 (714)
.+++||.+|+.|.. .+++ +++. ++..--++||.++.|++.+.| |..+.|+.+|+... |+.-+.|
T Consensus 29 f~a~wC~~C~~~~~-~l~~--la~~-~~~i~~~~vd~d~~~~l~~~~--------~v~~vPt~~i~~~g~~~~~~~~~G- 95 (113)
T cd02975 29 SSKEGCQYCEVTKQ-LLEE--LSEL-SDKLKLEIYDFDEDKEKAEKY--------GVERVPTTIFLQDGGKDGGIRYYG- 95 (113)
T ss_pred eCCCCCCChHHHHH-HHHH--HHHh-cCceEEEEEeCCcCHHHHHHc--------CCCcCCEEEEEeCCeecceEEEEe-
Confidence 47999999999884 3322 3433 244557789999999999888 88999999999753 3222322
Q ss_pred ccCCCCCCCCccHHHHHHHHHH
Q 005115 90 YFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 90 y~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|+. ..|.++|..|-.
T Consensus 96 -~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 96 -LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred -cCch-----HHHHHHHHHHHh
Confidence 3433 268888877643
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.51 E-value=0.00011 Score=62.48 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=47.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.+. + .++++. +.++..+++|.++.+++.+.| +..++|+.+++. +|+++.
T Consensus 17 ~~~~~C~~C~~~~~~-~--~~~~~~-~~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~~-~g~~~~ 77 (93)
T cd02947 17 FWAPWCGPCKAIAPV-L--EELAEE-YPKVKFVKVDVDENPELAEEY--------GVRSIPTFLFFK-NGKEVD 77 (93)
T ss_pred EECCCChhHHHhhHH-H--HHHHHH-CCCceEEEEECCCChhHHHhc--------CcccccEEEEEE-CCEEEE
Confidence 578999999999863 3 233333 678999999999988887777 788999999885 666553
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.50 E-value=9.9e-05 Score=63.01 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=43.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 91 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~ 91 (714)
..|++||++|+.|..- + +++++-++-.+.-++|| + ++....| |..|.|+.++ ||+.++.|. .
T Consensus 4 ~~~a~~C~~C~~~~~~-~--~~~~~e~~~~~~~~~v~--~-~~~a~~~--------~v~~vPti~i---~G~~~~~G~-~ 65 (76)
T TIGR00412 4 QIYGTGCANCQMTEKN-V--KKAVEELGIDAEFEKVT--D-MNEILEA--------GVTATPGVAV---DGELVIMGK-I 65 (76)
T ss_pred EEECCCCcCHHHHHHH-H--HHHHHHcCCCeEEEEeC--C-HHHHHHc--------CCCcCCEEEE---CCEEEEEec-c
Confidence 4689999999999752 1 24566666667778887 1 2323334 8899999888 898885443 4
Q ss_pred CC
Q 005115 92 PP 93 (714)
Q Consensus 92 p~ 93 (714)
|.
T Consensus 66 ~~ 67 (76)
T TIGR00412 66 PS 67 (76)
T ss_pred CC
Confidence 53
No 71
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.50 E-value=0.00019 Score=63.63 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
.|++||.+|+.|.... .++++.++. +|..+++|.++. ++...+ +..++|+.++..+.+
T Consensus 25 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~--------~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 25 FYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN-DVPSEF--------VVDGFPTILFFPAGD 84 (104)
T ss_pred EECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch-hhhhhc--------cCCCCCEEEEEcCCC
Confidence 6999999999998654 667777765 699999999875 455544 568999999997665
No 72
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.49 E-value=0.00014 Score=67.89 Aligned_cols=69 Identities=16% Similarity=-0.043 Sum_probs=50.1
Q ss_pred CCCCCChh--hH--hhhhhhCCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIK--CH--VMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~w--C~--~M~~e~f~~~~va~~l--n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..+.||+. |+ .|+. ++. ++|+-+ ......+|||.++.|++.+.| |..|+||.+++. +|+++.
T Consensus 34 f~a~wc~p~~Ck~~~~~p-~~~--~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 34 HEPVESDKEAQKQFQMEE-LVL--ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred ECCCcCChhhChhhcchh-hHH--HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CCccccEEEEEE-CCEEEE
Confidence 36788877 99 6652 111 244444 567899999999999999999 999999998886 899774
Q ss_pred cccccCC
Q 005115 87 GGTYFPP 93 (714)
Q Consensus 87 ~~ty~p~ 93 (714)
-.+..++
T Consensus 102 ~~G~~~~ 108 (120)
T cd03065 102 YDGEFAA 108 (120)
T ss_pred eeCCCCH
Confidence 2233443
No 73
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.48 E-value=0.00018 Score=63.85 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=48.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 81 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~ 81 (714)
-.|++||+.|+.|... | .++++.+...+.-+++|.++.+++.+.| |..|+|+.+|+.++
T Consensus 24 ~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~i~~~P~~~~~~~~ 82 (103)
T cd03001 24 EFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQY--------GVRGFPTIKVFGAG 82 (103)
T ss_pred EEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHHC--------CCCccCEEEEECCC
Confidence 3689999999999754 4 4467777777888899999998887777 88999999999766
No 74
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.48 E-value=0.0001 Score=66.27 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=46.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCcCceEEeCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 81 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~ 81 (714)
..||+||..|+.|... |+ ++++.+. .+.-++||.+ +.|++.+.| +..|+||++|+...
T Consensus 24 ~F~a~WC~~C~~~~p~-l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~--------~V~~~PT~~lf~~g 82 (100)
T cd02999 24 LFYASWCPFSASFRPH-FN--ALSSMFP-QIRHLAIEESSIKPSLLSRY--------GVVGFPTILLFNST 82 (100)
T ss_pred EEECCCCHHHHhHhHH-HH--HHHHHhc-cCceEEEECCCCCHHHHHhc--------CCeecCEEEEEcCC
Confidence 3689999999999853 33 3566554 5777889998 788888888 88999999999754
No 75
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.46 E-value=0.00018 Score=63.81 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=49.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCC-CccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee-~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||+.|+.|... | .++++.+. .+++.+++|.++ .+++.+.| +..|+|+++|+.+.|+.
T Consensus 24 ~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~~~~~~~ 88 (105)
T cd02998 24 EFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFFPKGSTE 88 (105)
T ss_pred EEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEEeCCCCC
Confidence 3689999999999654 2 33555554 579999999999 88888877 78899999999887654
No 76
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.37 E-value=0.0024 Score=74.06 Aligned_cols=134 Identities=19% Similarity=0.093 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC----
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF---- 486 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~----~~~~~~---- 486 (714)
+-.++|++.++..++| +++.+.+.+..+.|.+.... +| ++..+.... .....-
T Consensus 63 g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~he 123 (520)
T PF07944_consen 63 GKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMHE 123 (520)
T ss_pred HHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCccc
Confidence 7789999999999998 88999999999999987753 45 545544322 111122
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---hcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE---LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 563 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~---~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~ 563 (714)
++....++.||++.|++||+++.|+.|.++++.+.+ .|-+ +.+. ..-.+ +..-+..
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~~-------------------~~~~~-~~~~i~~ 182 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPGQ-------------------KMGYP-EHGGINE 182 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHhh-------------------ccccc-ccchHHH
Confidence 455678999999999999999999999999999933 3321 1100 00112 2234558
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 005115 564 NLVRLASIVAGSKSDYYRQNAEHSLAVF 591 (714)
Q Consensus 564 ~LlrL~~lt~~~~~~~y~e~A~~~l~~~ 591 (714)
.|.+|+++||+ ++|++.|+.++...
T Consensus 183 ~l~~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 183 ALVRLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHh
Confidence 99999999996 78999998887754
No 77
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.018 Score=64.53 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCC--CcEEE-EecCCCCC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHR-YSVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 275 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~--GGF~R-YsvD~~W~---vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~ 275 (714)
++.+.+-+..+.+.+++ +.|..| ||+++ =.-..+|. .=|| ||-=.-|+.....+||+||.+..++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 57888888888888888 888776 46554 12245664 3444 99999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCc
Q 005115 276 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 355 (714)
Q Consensus 276 ~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~ 355 (714)
-.+|+.+-+ .|+- | - ..|.+
T Consensus 159 lADhi~tvf-gp~~------~--q----------------------------------------~~g~~----------- 178 (589)
T COG3533 159 LADHIATVF-GPEE------D--Q----------------------------------------VPGYC----------- 178 (589)
T ss_pred HHHhhhhhc-Cccc------c--c----------------------------------------ccccc-----------
Confidence 999998744 1110 0 0 01111
Q ss_pred cCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhh
Q 005115 356 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESA 435 (714)
Q Consensus 356 ~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~ 435 (714)
..+=+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------------gH~eielAl~~Ly~~Tg~----- 196 (589)
T COG3533 179 ---------------------------------------------------------GHPEIELALAELYRLTGD----- 196 (589)
T ss_pred ---------------------------------------------------------CCCchhHHHHHHHHHhcC-----
Confidence 012234578999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005115 436 MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 515 (714)
Q Consensus 436 ~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~ 515 (714)
++||+.|+... .+...+| +. ..|.-...++.--..+++.|+.+||+.|||+.+...+..
T Consensus 197 -----------~rYL~LA~~Fi---~~rg~~P-----~~--~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 197 -----------QRYLDLARRFI---HQRGVEP-----LA--QRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred -----------hHHHHHHHHHH---HHhccCh-----hh--cCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 89999998754 3333332 11 122212256677788999999999999999999999999
Q ss_pred HHHHHHHh
Q 005115 516 LQNTQDEL 523 (714)
Q Consensus 516 L~~~~~~~ 523 (714)
|++.+-++
T Consensus 256 lW~~~t~k 263 (589)
T COG3533 256 LWQNVTTR 263 (589)
T ss_pred HHHHhhhh
Confidence 99887655
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.33 E-value=0.00036 Score=65.21 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=45.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHH--HHHHHHHHh---cCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK--VYMTYVQAL---YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~--~y~~~~q~~---~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||+||+.|...- .++++.-+..|+-|.+|.+..+++.+ .+..+.+.. .+..|.|+.+++. +|+.+..
T Consensus 30 f~~~~Cp~C~~~~P~l---~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k-~Gk~v~~ 105 (122)
T TIGR01295 30 IGRKTCPYCRKFSGTL---SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT-DGKQVSV 105 (122)
T ss_pred EECCCChhHHHHhHHH---HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe-CCeEEEE
Confidence 6899999999998542 23444433447777777665444431 233344433 3678899999776 8888744
No 79
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.30 E-value=0.00025 Score=62.55 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||+.|+.|... | .++++.+..+..-++||.++.+++.+.| +..++|+.+|+. +|+..
T Consensus 24 f~~~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~g~~~ 84 (103)
T PF00085_consen 24 FYAPWCPPCKAFKPI-L--EKLAKEYKDNVKFAKVDCDENKELCKKY--------GVKSVPTIIFFK-NGKEV 84 (103)
T ss_dssp EESTTSHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTSHHHHHHT--------TCSSSSEEEEEE-TTEEE
T ss_pred EeCCCCCccccccce-e--cccccccccccccchhhhhccchhhhcc--------CCCCCCEEEEEE-CCcEE
Confidence 589999999999843 3 3466777779999999999999999888 899999999886 55555
No 80
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.30 E-value=0.046 Score=60.70 Aligned_cols=143 Identities=8% Similarity=-0.069 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----------cCCCCCCC
Q 005115 417 VISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAP 484 (714)
Q Consensus 417 ~I~aLa~a~~~~-~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-----------~~g~~~~~ 484 (714)
.+++|+.+++.. .. +.+++.++++.+|+.++..+...+.++... ..+.....
T Consensus 177 i~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T cd04793 177 PLALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRD 240 (382)
T ss_pred HHHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCC
Confidence 467888888866 44 689999999999998877553333222211 01111234
Q ss_pred CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHH
Q 005115 485 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 564 (714)
Q Consensus 485 ~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~ 564 (714)
++...-+=.+.+++.++++++|+.+.+.|.++.+........ .+ . ..+...=.|.+=.+..
T Consensus 241 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~--------------~~~~~lChG~~G~~~~ 301 (382)
T cd04793 241 AWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS---K--------------LISPTLCHGLAGLLFI 301 (382)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc---c--------------CCCCCcCccHHHHHHH
Confidence 566667778899999999999999999999988776543211 00 0 0011233455666788
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 005115 565 LVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 597 (714)
Q Consensus 565 LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~ 597 (714)
|++++..|++ +++.+.|++++........+
T Consensus 302 l~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 302 FYLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 9999999986 67999999888887766553
No 81
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.28 E-value=0.00024 Score=62.73 Aligned_cols=62 Identities=16% Similarity=-0.046 Sum_probs=50.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
.++++||+||..+.+-. .++++ .+.++-..++|.++.|++...| |..+.|++++ ||+.++.|
T Consensus 18 ~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~~~~e~a~~~--------~V~~vPt~vi---dG~~~~~G 79 (89)
T cd03026 18 TYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGALFQDEVEER--------GIMSVPAIFL---NGELFGFG 79 (89)
T ss_pred EEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhHhCHHHHHHc--------CCccCCEEEE---CCEEEEeC
Confidence 46789999999877543 56664 4567888889999999999999 8889999987 78887654
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.26 E-value=0.00064 Score=67.13 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=46.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH---------------HHHHhcCCCCcCceEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALYGGGGWPLSVF 77 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~---------------~~q~~~g~~g~P~~vf 77 (714)
.+++||+.|+.|. |.+.++.++++.-|.|+.++.++-...|.+ .+....+..|+|+++|
T Consensus 70 F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~ 143 (173)
T TIGR00385 70 VWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFL 143 (173)
T ss_pred EECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEE
Confidence 5899999999985 446666667788888876433211111111 1111236788999999
Q ss_pred eCCCCccccc
Q 005115 78 LSPDLKPLMG 87 (714)
Q Consensus 78 l~p~g~p~~~ 87 (714)
++++|+.++.
T Consensus 144 id~~G~i~~~ 153 (173)
T TIGR00385 144 VDGNGVILYR 153 (173)
T ss_pred EcCCceEEEE
Confidence 9999998865
No 83
>PTZ00051 thioredoxin; Provisional
Probab=97.23 E-value=0.00035 Score=61.63 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=47.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||..|+.|.. .|+ ++++.. .++..++||.++.+++.+.| +..|+|+.+++ .+|+++..
T Consensus 24 ~f~~~~C~~C~~~~~-~l~--~l~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 24 DFYAEWCGPCKRIAP-FYE--ECSKEY-TKMVFVKVDVDELSEVAEKE--------NITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred EEECCCCHHHHHHhH-HHH--HHHHHc-CCcEEEEEECcchHHHHHHC--------CCceeeEEEEE-eCCeEEEE
Confidence 468999999999975 332 344433 24677888998888777777 88999997766 79998843
No 84
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.19 E-value=0.00055 Score=66.61 Aligned_cols=72 Identities=7% Similarity=0.033 Sum_probs=40.6
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHH---HHHHHHhc---CCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY---MTYVQALY---GGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y---~~~~q~~~---g~~g~P~~vfl~p~g~p~ 85 (714)
..+++||.+|+.+... ++ ++.+..+-.+|.|-+|....+.....| ....+... |..|.|++++++++|..+
T Consensus 56 nFWAsWCppCr~e~P~-L~--~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i 132 (153)
T TIGR02738 56 FFYQSTCPYCHQFAPV-LK--RFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKA 132 (153)
T ss_pred EEECCCChhHHHHHHH-HH--HHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEE
Confidence 4689999999997532 11 122222334566666654322111111 11222222 568999999999998865
Q ss_pred c
Q 005115 86 M 86 (714)
Q Consensus 86 ~ 86 (714)
.
T Consensus 133 ~ 133 (153)
T TIGR02738 133 Y 133 (153)
T ss_pred E
Confidence 3
No 85
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.18 E-value=0.00044 Score=63.68 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=45.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCC--CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~e--e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||+.|+.|.. +|+ ++++.+.+ .+...+||.+ +.+++.+.| +..++|+.+|+.+..+...
T Consensus 26 f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--------~i~~~Pt~~lf~~~~~~~~ 93 (114)
T cd02992 26 FYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF--------GVTGYPTLRYFPPFSKEAT 93 (114)
T ss_pred EECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC--------CCCCCCEEEEECCCCccCC
Confidence 68999999999986 465 37776653 2555778853 455666666 8899999999977664333
No 86
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.15 E-value=0.012 Score=59.11 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 248 YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 248 yDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
..|++.+.++++||++|+|+.|+++|+++++..... ..+||+-+
T Consensus 30 maQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~ 73 (189)
T PF06662_consen 30 MAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeE
Confidence 469999999999999999999999999999987643 34688755
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.15 E-value=0.00037 Score=65.12 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---c--cEEEEEcCCCCccHHHHH---------------HHHHHHhcCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVY---------------MTYVQALYGGGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~--Fv~vkvD~ee~p~i~~~y---------------~~~~q~~~g~~g~ 72 (714)
.+++||+.|+.|....- ++.+.+.+ + +|.|.+|.++ .++.+.+ ...+....|..++
T Consensus 25 Fwa~wC~~C~~~~p~l~---~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (131)
T cd03009 25 FSASWCPPCRAFTPKLV---EFYEKLKESGKNFEIVFISWDRDE-ESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGI 100 (131)
T ss_pred EECCCChHHHHHhHHHH---HHHHHHHhcCCCEEEEEEECCCCH-HHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCC
Confidence 57999999999764411 12222322 2 5666666553 1221111 0112223478999
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+.+..
T Consensus 101 P~~~lid~~G~i~~~ 115 (131)
T cd03009 101 PTLIILDADGEVVTT 115 (131)
T ss_pred CEEEEECCCCCEEcc
Confidence 999999999998854
No 88
>PLN02340 endoglucanase
Probab=97.14 E-value=0.012 Score=68.97 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=113.1
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=++..---|-|.=+.|++.|.+ +|... +-|.+++.++=.+||+++ |..+.+.||.-. |.+
T Consensus 73 DlsGGwy----DAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~ 147 (614)
T PLN02340 73 DLVGGYY----DAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGD 147 (614)
T ss_pred CCCCCce----eCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence 5778888 4444555556689999999999887 34433 358899999999999998 766667777643 333
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.+ | ..|...|.... -+..|.|+
T Consensus 148 ~D------H------~~W~~PE~~~~-------~R~~y~i~--------------------------------------- 169 (614)
T PLN02340 148 SD------H------YCWERAEDMTT-------PRTAYKLD--------------------------------------- 169 (614)
T ss_pred cc------c------ccCCChhhcCC-------cCceeecC---------------------------------------
Confidence 31 1 13543221100 00000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
...|. |+--+-+..|||.|++++.+. ...|. .++|+.|+++++
T Consensus 170 ---------------------~~~pg------Sd~a~e~AAAlAaas~vfk~~--D~~YA--------~~lL~~Ak~ly~ 212 (614)
T PLN02340 170 ---------------------QNHPG------SDLAGETAAALAAASKAFKPY--NSSYS--------DLLLVHAKQLFS 212 (614)
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhccCC--CHHHH--------HHHHHHHHHHHH
Confidence 01122 222377889999999999851 11111 467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 518 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~ 518 (714)
|..++- |.+..+...+.. ...++-| .+++|.++||++|||..||+.+.....
T Consensus 213 fA~~~~-----g~y~~s~~~a~~~Y~ss~~~D---El~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 213 FADKFR-----GLYDDSIQNAKKFYTSSGYSD---ELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHhCC-----CCccCCCCccccCCCCCCcch---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 998742 211100011111 0123333 457889999999999999999987654
No 89
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.13 E-value=0.00056 Score=62.92 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||..|+.|... + +++++.. .+..-++||.++.+++.+.| +..++|+.+|+. +|+.+..
T Consensus 29 f~a~~c~~C~~~~p~-l--~~la~~~-~~i~f~~Vd~~~~~~l~~~~--------~v~~vPt~l~fk-~G~~v~~ 90 (113)
T cd02989 29 FYHPEFFRCKIMDKH-L--EILAKKH-LETKFIKVNAEKAPFLVEKL--------NIKVLPTVILFK-NGKTVDR 90 (113)
T ss_pred EECCCCccHHHHHHH-H--HHHHHHc-CCCEEEEEEcccCHHHHHHC--------CCccCCEEEEEE-CCEEEEE
Confidence 689999999999843 2 2233322 24677999999999999988 889999998887 7887743
No 90
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0013 Score=69.48 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYF 91 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-ty~ 91 (714)
..++||+.|+.+...- ..++.--+-.|+.+|||.|+.|+|...| |+.+.|+.|.+- ||+|+-+. +-.
T Consensus 50 fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~p~vAaqf--------giqsIPtV~af~-dGqpVdgF~G~q 117 (304)
T COG3118 50 FWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAEPMVAAQF--------GVQSIPTVYAFK-DGQPVDGFQGAQ 117 (304)
T ss_pred ecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcchhHHHHh--------CcCcCCeEEEee-CCcCccccCCCC
Confidence 5799999999876431 3466667789999999999999999999 999999877664 99999764 334
Q ss_pred CCCCCCCCccHHHHHHHHHHH
Q 005115 92 PPEDKYGRPGFKTILRKVKDA 112 (714)
Q Consensus 92 p~~~~~~~~~f~~~L~~i~~~ 112 (714)
|.+ ...+.|+++...
T Consensus 118 Pes------qlr~~ld~~~~~ 132 (304)
T COG3118 118 PES------QLRQFLDKVLPA 132 (304)
T ss_pred cHH------HHHHHHHHhcCh
Confidence 433 466666666544
No 91
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.06 E-value=0.012 Score=63.25 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL-ISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~l-i~all~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
++|++.|+++++++..+. +.+.|+|.|... -+ .-.+.|--|+ ..=++.+-+.+++++|++.+..-+....++..
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~--~p--~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~ 172 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVK--YP--HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLR 172 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccC--ch--hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999988 445688998532 11 2223344333 34467788999999999999999999999999
Q ss_pred cccCCccccCCCCCCccccccccCCCCC---CCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhH
Q 005115 526 DREGGGYFNTTGEDPSVLLRVKEDHDGA---EPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAV 602 (714)
Q Consensus 526 D~~~Ggff~t~~~~~~li~r~k~~~D~a---~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~~ 602 (714)
|+++|-||-.-..+... ++....-|- ---+|+=.+.+|..+-.+.... .+ -+....++++.....|.++-...
T Consensus 173 Dp~TGL~YH~wd~~~~~--~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~-~~-~r~~l~~~l~d~v~al~r~Qde~ 248 (357)
T COG4225 173 DPETGLYYHGWDEDGTM--PWANNESGEPAFWARGNGWYAMALADLLELLPED-HP-DRRELLNVLRDLVDALIRYQDES 248 (357)
T ss_pred CCCcCceEEeeccCCCC--ccccccCCCceeeecccchHHHHHHHHHHhCCCC-Cc-hHHHHHHHHHHHHHHHHHhhccc
Confidence 99999887432222111 111111110 0125666777777777777642 12 33444555555555555544443
Q ss_pred HHHH
Q 005115 603 PLMC 606 (714)
Q Consensus 603 ~~~l 606 (714)
..|-
T Consensus 249 GlW~ 252 (357)
T COG4225 249 GLWH 252 (357)
T ss_pred cchh
Confidence 3333
No 92
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=97.04 E-value=0.0022 Score=72.66 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC-C--cc
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG-F--LD 488 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~-~--l~ 488 (714)
+-.+.++.|||.|++++++- ...|. .++|+.|+++.+|..++--. +. ........+ + ..
T Consensus 154 ~~~~~~AAalA~As~v~k~~--d~~~A--------~~~L~~A~~~~~~a~~~~~~-----~~---~~~~~~~~~~Y~~~~ 215 (444)
T PF00759_consen 154 DATAEFAAALAAASRVFKDF--DPAYA--------AQCLKAAKEAYAFAKKNPGV-----YS---DNPQPNGGGFYNSSG 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--THHHH--------HHHHHHHHHHHHHHHHSTTH-----GG---GTSTCTTTTTSHCS-
T ss_pred HHHHHHHHHHHHHHHhcccC--CHHHH--------HHHHHHHHHHHHHHHhCCCc-----cc---CCcccccCCcccCCC
Confidence 33578889999999999861 00111 57899999999999876421 10 111010000 0 12
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005115 489 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 520 (714)
Q Consensus 489 DyA~li~all~LyeaTgd~~~L~~A~~L~~~~ 520 (714)
..-.+++|.++||++||+++|++.|.+....+
T Consensus 216 ~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 216 YEDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp SHHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred cccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 23347889999999999999999998776544
No 93
>PLN02171 endoglucanase
Probab=97.01 E-value=0.024 Score=66.65 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC---CCCCcchH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK---APGFLDDY 490 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~---~~~~l~Dy 490 (714)
+-+..|||.|++++.+- ...|. .++|+.|+++++|..++= | .+.. ...+... ..++-|
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~YA--------~~lL~~Ak~ly~fA~~~~-----g-~y~~~~~~~~~~Y~s~s~y~D-- 240 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGYA--------NELLTHAKQLFDFADKYR-----G-KYDSSITVAQKYYRSVSGYGD-- 240 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHhCC-----C-cccCCCcccCCccCCCCCccH--
Confidence 77889999999999761 00111 457999999999998752 1 1110 0011110 123333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005115 491 AFLISGLLDLYEFGSGTKWLVWAIELQNT 519 (714)
Q Consensus 491 A~li~all~LyeaTgd~~~L~~A~~L~~~ 519 (714)
.+++|.++||.+|||..||+.+....+.
T Consensus 241 -El~WAAawLy~ATgd~~Yl~~~~~~~~~ 268 (629)
T PLN02171 241 -ELLWAAAWLYQATNNQYYLDYLGNNGDA 268 (629)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4678999999999999999988775543
No 94
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.00 E-value=0.0015 Score=65.38 Aligned_cols=69 Identities=7% Similarity=0.047 Sum_probs=45.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH---------------HHHHhcCCCCcCceEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALYGGGGWPLSVF 77 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~---------------~~q~~~g~~g~P~~vf 77 (714)
.+++||+.|+.+... +.++-++++.-|-|+.++.++-.+.|++ ......|..|+|+++|
T Consensus 75 FwatwC~~C~~e~p~------l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v 148 (185)
T PRK15412 75 VWATWCPTCRAEHQY------LNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFL 148 (185)
T ss_pred EECCCCHHHHHHHHH------HHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE
Confidence 579999999998654 4444445666666765544432222221 1122347889999999
Q ss_pred eCCCCccccc
Q 005115 78 LSPDLKPLMG 87 (714)
Q Consensus 78 l~p~g~p~~~ 87 (714)
++++|++.+.
T Consensus 149 id~~G~i~~~ 158 (185)
T PRK15412 149 IDGNGIIRYR 158 (185)
T ss_pred ECCCceEEEE
Confidence 9999998865
No 95
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.98 E-value=0.00075 Score=62.02 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=51.1
Q ss_pred CCCCC--ChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHF--LIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~w--C~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++| |+-|+.|+.. | +++++.+......++||.++.|.+...| |+.|+||.+|+. +|+++..
T Consensus 34 f~~~~~~cp~c~~i~P~-l--eela~e~~~~v~f~kVdid~~~~la~~f--------~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 34 LAGDPVRFPEVLDVAVV-L--PELLKAFPGRFRAAVVGRADEQALAARF--------GVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ecCCcccCcchhhhHhH-H--HHHHHHCCCcEEEEEEECCCCHHHHHHc--------CCCcCCEEEEEE-CCEEEEE
Confidence 58887 9999999853 2 3466666556667899999999999999 899999998887 7888854
No 96
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.96 E-value=0.00094 Score=76.70 Aligned_cols=27 Identities=7% Similarity=-0.108 Sum_probs=21.5
Q ss_pred cCCCCcCceEEeCCCCccccc-ccccCC
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG-GTYFPP 93 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~-~ty~p~ 93 (714)
.|+.|+|+++|++++|+++.. .++++.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 378999999999999999855 345553
No 97
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00058 Score=62.36 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=44.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||+||+.|+.|+... .+++...++ =+-+|||.||-+++.+.| ++.+.|+.+|+. +|+-+
T Consensus 28 F~a~wCgPCk~i~P~~---~~La~~y~~-v~Flkvdvde~~~~~~~~--------~V~~~PTf~f~k-~g~~~ 87 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKF---EKLAEKYPD-VVFLKVDVDELEEVAKEF--------NVKAMPTFVFYK-GGEEV 87 (106)
T ss_pred EECCCCcchhhhhhHH---HHHHHHCCC-CEEEEEecccCHhHHHhc--------CceEeeEEEEEE-CCEEE
Confidence 6899999999999531 123333333 577889999877777777 788999999994 56654
No 98
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.96 E-value=0.00064 Score=62.49 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=41.8
Q ss_pred CCCCCChhhHhhhhhhC----------------CCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceE
Q 005115 13 RRTHFLIKCHVMEVESF----------------EDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 76 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f----------------~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~v 76 (714)
.+++||..|+.|....- +.+++.++++++-++..+-.++...+.+.| +..++|+++
T Consensus 27 F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~i~~~P~~~ 98 (123)
T cd03011 27 FWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARW--------GVSVTPAIV 98 (123)
T ss_pred EECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhC--------CCCcccEEE
Confidence 57999999999864321 123333344333333332222323344444 788999999
Q ss_pred EeCCCCcccccc-cccCC
Q 005115 77 FLSPDLKPLMGG-TYFPP 93 (714)
Q Consensus 77 fl~p~g~p~~~~-ty~p~ 93 (714)
|++++| +.+.. ++.++
T Consensus 99 vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 99 IVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred EEcCCC-eEEEEeccCCH
Confidence 999998 55433 34443
No 99
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.93 E-value=0.0011 Score=60.71 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=45.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||+.|+.|... |+ ++++.+. +..-++||.++. ++.+.| +..++|+.+|+. +|+++..
T Consensus 31 F~a~~c~~C~~l~~~-l~--~la~~~~-~v~f~~vd~~~~-~l~~~~--------~i~~~Pt~~~f~-~G~~v~~ 91 (113)
T cd02957 31 FYEPGFPRCKILDSH-LE--ELAAKYP-ETKFVKINAEKA-FLVNYL--------DIKVLPTLLVYK-NGELIDN 91 (113)
T ss_pred EeCCCCCcHHHHHHH-HH--HHHHHCC-CcEEEEEEchhh-HHHHhc--------CCCcCCEEEEEE-CCEEEEE
Confidence 789999999999853 32 4454443 344578998887 887777 889999887775 7888744
No 100
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.91 E-value=0.052 Score=59.14 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cc--------
Q 005115 155 LCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HD-------- 223 (714)
Q Consensus 155 ~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi---~D-------- 223 (714)
++++.|.+.-.+ .|||+..+ +....-.+.+......+. . ++..+.+.+.++-|..-.+ -+
T Consensus 3 ~~~~~L~~~Q~~-dG~W~~~~--~~~~~Ta~~~~al~~~g~---~---~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~ 73 (348)
T cd02889 3 RALDFLLSLQAP-DGHWPGEY--SQVWDTALALQALLEAGL---A---PEFDPALKKALEWLLKSQIRDNPDDWKVKYRH 73 (348)
T ss_pred hHHHHHHHhccC-CCCccccC--CchHHHHHHHHHHHHcCC---C---CccCHHHHHHHHHHHhcCCCCCCCchhhcCCC
Confidence 445666666555 69998876 332222233333322221 0 1233445555555544332 22
Q ss_pred cCCCcEEEEecCCC-CCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 224 HVGGGFHRYSVDER-WHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 224 ~v~GGF~RYsvD~~-W~vPHFEKMLyDNA~ll~~y~~Ay~~t~--d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
.-.||+- |+.... |.. ..+.|..+.++..+....+ ++.+.+.+.++++||.+ .+.++|+|..
T Consensus 74 ~~~Ggw~-y~~~~~~~~~------~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 74 LRKGGWA-FSTANQGYPD------SDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CCCCcCc-ccCcCCCCCC------CCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 3444443 554322 221 2378999999998888763 57889999999999997 5788999864
No 101
>PLN02420 endoglucanase
Probab=96.91 E-value=0.029 Score=64.69 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=109.3
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=.+..---|-|.=+.|++.|.+ +|... +-|.+++.++=.++|+++ |+...+.||.-. |.+
T Consensus 84 DlsGGwy----DAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk-~~~~~~~~~~qvGdg~ 158 (525)
T PLN02420 84 DLVGGYH----DAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIK-AHTSPNVLWAEVGDGD 158 (525)
T ss_pred cCCCcce----ecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHH-hCcCCCceEEeeCCCC
Confidence 5778888 3444455555688888888888765 44443 458899999999999998 665567777643 222
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.+ + +| |...|... ..+.+..+
T Consensus 159 ~D-------H----~~-w~~Pe~~~---------------------------------~~R~~~~i-------------- 179 (525)
T PLN02420 159 TD-------H----YC-WQRPEDMT---------------------------------TSRRAFKI-------------- 179 (525)
T ss_pred cc-------c----cc-ccChhhcc---------------------------------ccCceEEe--------------
Confidence 21 1 12 54332110 00000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
.-..|.. +--+-+..|||.|++++++. ...| ..++|+.|+++++
T Consensus 180 --------------------~~~~pgs------d~aa~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~ 223 (525)
T PLN02420 180 --------------------DENNPGS------DIAGETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFE 223 (525)
T ss_pred --------------------cCCCCcc------HHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHH
Confidence 0011222 22377889999999999861 0011 1467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 517 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~ 517 (714)
|..++- |.+-.....+.+........+-.+++|.++||++|||..|++.+.+..
T Consensus 224 fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 224 FGDKYR-----GKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHhcC-----CccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 987531 211000000011111111123567889999999999999999887543
No 102
>PLN02266 endoglucanase
Probab=96.90 E-value=0.034 Score=63.97 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=47.9
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHhccCCCCceeeec
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL--TKDVFYSYICRDILDYLRRDMIGPGGEIFSAE 295 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~--t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~ 295 (714)
.+-||+|- ..=.+..---|-|.-.+|.+.|.+--.. .+-|.+++.++=.++|+++ |+.++|+||.-+
T Consensus 89 DlsGGwyD----AGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk-~~~~~~~vy~qV 157 (510)
T PLN02266 89 DLVGGYYD----AGDNVKFGFPMAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLK-ATAHPDTIYVQV 157 (510)
T ss_pred cCCCccee----CCCCceecchHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-hccCCCeEEEEe
Confidence 57788883 3334444455777777888887763222 3468899999999999998 777788898743
No 103
>PLN03009 cellulase
Probab=96.90 E-value=0.024 Score=65.12 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=46.9
Q ss_pred cCCCcEEEEecC-CCCCCCCCchhHHHHHHHHHHHHH---HHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005115 224 HVGGGFHRYSVD-ERWHVPHFEKMLYDQGQLANVYLD---AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 294 (714)
Q Consensus 224 ~v~GGF~RYsvD-~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa 294 (714)
.+-||+|- +=| -+..+| |-|--.+|++.|.+ +|...+-|.+++.++=.++||++ |+.++|+||.-
T Consensus 71 DlsGGwyD-AGD~~Ky~~p----~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llk-m~~~~~~~y~q 139 (495)
T PLN03009 71 DLTGGYYD-AGDNVKFGFP----MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLK-TVSQPNRIFVQ 139 (495)
T ss_pred cCCCccee-CCCCceeccc----hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHH-cccCcCeEEEE
Confidence 46678874 211 123344 77777788887766 56566778899999999999998 76667889874
No 104
>PTZ00102 disulphide isomerase; Provisional
Probab=96.89 E-value=0.00072 Score=76.94 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l--n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++||++|+.|+. +|+ ++++.+ +.+++.+++|.++.+.+.+.| +..|+|+.+|+.++++.
T Consensus 382 f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~--------~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 382 IYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF--------SWSAFPTILFVKAGERT 444 (477)
T ss_pred EECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC--------CCcccCeEEEEECCCcc
Confidence 58999999999975 455 344444 346888999999887766666 78899999999987763
No 105
>PLN02308 endoglucanase
Probab=96.82 E-value=0.039 Score=63.32 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=46.6
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhccCCCCceeeec
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMIGPGGEIFSAE 295 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t--~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~ 295 (714)
.+-||+| |..=.+.+---|-|.-.+|.+.|.+.-... ..+..++.++=.++|+++ |+.++|+||.-+
T Consensus 71 DlsGGWy----DAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~~e~~~~ldeikw~~D~llk-m~~~~~~vy~qV 139 (492)
T PLN02308 71 DLTGGYY----DAGDNVKFGFPMAFTTTLMSWSIIDFGRTMGPELENAVKAVKWATDYLMK-ATAIPNVVYVQV 139 (492)
T ss_pred eCCCCce----eCCCcCeecCchHHHHHHHHHHHHHhHhhhcchhHHHHHHHHHHHHHHHH-hcCCCCeEEEEe
Confidence 4667777 333344444567777788888887743332 235678888889999998 778889998744
No 106
>PLN02345 endoglucanase
Probab=96.81 E-value=0.024 Score=64.61 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 492 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA~ 492 (714)
+-+..|||.|++++.+.- ..|. .++|+.|+++.+|..++- |.+..+..++.. ...++-|+
T Consensus 145 ~~~AAAlA~as~vfk~~D--~~YA--------~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~DE--- 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSSD--STYS--------DTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGDE--- 206 (469)
T ss_pred HHHHHHHHHHHHHhccCC--HHHH--------HHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCcccccH---
Confidence 778889999999998610 0111 467999999999998752 111111000000 11233344
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 005115 493 LISGLLDLYEFGSGTKWLVWAI 514 (714)
Q Consensus 493 li~all~LyeaTgd~~~L~~A~ 514 (714)
+++|.++||.+|||..|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 5788999999999999999875
No 107
>PLN02909 Endoglucanase
Probab=96.79 E-value=0.094 Score=60.07 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=108.1
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHH---HHHHccC-ChHHHHHHHHHHHHHHHhccCCCCceeeeccCCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYL---DAFSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 299 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~---~Ay~~t~-d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs 299 (714)
.+.||+|- ..=++..---|-|-=..|++.|. ++|..++ -|..++.++=.++||++ |+.++|+||.-+--..
T Consensus 77 DlsGGwyD----AGD~~Kf~~p~a~s~~~L~w~~~~y~~~~~~~g~~~d~ldeikw~~D~llk-~~~~~~~~y~qVg~~~ 151 (486)
T PLN02909 77 DLVGGYYD----AGDNVKYGLPMAFTVTTLAWSTLAYEKELRATGELENVRAAIRWGTDYFLK-AASRKNRLYVQVGDPN 151 (486)
T ss_pred CCCCCcee----CCCCceeCCchHHHHHHHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHH-hccCCCeEEEEeCCCC
Confidence 58899994 33344444557777777776654 4565543 48899999999999998 7777888987432110
Q ss_pred ccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCH
Q 005115 300 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 379 (714)
Q Consensus 300 ~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~ 379 (714)
..+ ..|...|... .-+.+..+
T Consensus 152 ---------~Dh--~~W~~Pe~~~---------------------------------~~R~~~~i--------------- 172 (486)
T PLN02909 152 ---------LDH--QCWVRPENMK---------------------------------TPRTVLEI--------------- 172 (486)
T ss_pred ---------CCc--ccCCChhhcc---------------------------------CCceeEec---------------
Confidence 000 0143221110 00000000
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005115 380 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 459 (714)
Q Consensus 380 ~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~ 459 (714)
....|..| --+-+..|||.|++++++- ...|. .++|+.|+++++|
T Consensus 173 -------------------~~~~pgtd------~a~~~AAAlA~as~vfk~~--D~~yA--------~~lL~~Ak~~y~f 217 (486)
T PLN02909 173 -------------------DEKTPGTE------IAAETAAAMAASSMVFRHV--DHKYS--------RRLLNKAKLLFKF 217 (486)
T ss_pred -------------------CCCCCCcH------HHHHHHHHHHHHHHhhccC--CHHHH--------HHHHHHHHHHHHH
Confidence 00123332 2377889999999999861 00111 4679999999999
Q ss_pred HHHhccccCCCeEEEEecCCCCC---CCCCcchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005115 460 IRRHLYDEQTHRLQHSFRNGPSK---APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 515 (714)
Q Consensus 460 l~~~l~d~~~G~l~~~~~~g~~~---~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~ 515 (714)
..++= |.+ .+..+. ..++.| .+++|.++||.+|||..||+.+..
T Consensus 218 A~~~~-----g~y----~~~~~~y~s~s~y~D---El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 218 AKAHK-----GTY----DGECPFYCSYSGYND---ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHhCC-----CCc----CCCCCccccCCCcch---HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 98762 111 011111 123434 567888999999999999997764
No 108
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.78 E-value=0.0019 Score=66.09 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+.|.. .+ .+++.. |.+...++||.++.|++.+.| |+.+.|+.+|.. +|+.+
T Consensus 140 F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~~--------~V~~vPtl~i~~-~~~~~ 199 (215)
T TIGR02187 140 FVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEKY--------GVMSVPKIVINK-GVEEF 199 (215)
T ss_pred EECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHHh--------CCccCCEEEEec-CCEEE
Confidence 68999999999883 22 223322 445556789999999999988 899999999864 55543
No 109
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.087 Score=59.36 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
+-.|.|+..+++++|. ...|+.+.+++++|...+- +..+.. ....++ --+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvfg-p~~~q~--------~g~~gH----~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVFG-PEEDQV--------PGYCGH----PEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhcC-cccccc--------ccccCC----Cchh
Confidence 6688999999999998 7899999999999987763 222211 111222 2345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHH----HHHHHHHHHH
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 570 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsv----aa~~LlrL~~ 570 (714)
.||++||++||+++||+.|+.+...- -.++ +.. |-.+. + .+.++ ....+.+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~r---g~~P-----~~~---------rg~e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQR---GVEP-----LAQ---------RGDEL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---ccCh-----hhc---------Cchhh-h----hhhHHHHHHHhhhHHHHHH
Confidence 89999999999999999998554332 1111 100 00011 1 23333 4456788999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHH
Q 005115 571 IVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 571 lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
++|+ +.++..++.+.+.+..
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t~ 262 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVTT 262 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhhh
Confidence 9996 6788888777776653
No 110
>PTZ00102 disulphide isomerase; Provisional
Probab=96.77 E-value=0.0011 Score=75.40 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
.|++||+.|+.|..+.. ++++.++ .+++.++||.++.+++.+.| +..|+|+.+|+...+
T Consensus 56 f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 56 FYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQEF--------GVRGYPTIKFFNKGN 117 (477)
T ss_pred EECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHhc--------CCCcccEEEEEECCc
Confidence 58999999999997643 3555554 35888999999999988888 889999999998654
No 111
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=96.75 E-value=0.43 Score=53.93 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCChHH
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 509 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-----------------~~~l~DyA~li~all~LyeaTgd~~~ 509 (714)
++.++++.....--.+..||++++.|.-.+.+|+... ..+.-+ ......++..|.++.|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~-~~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPAD-PDYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE---HHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCc-hhHhHHHHHHHHcCCCHHH
Confidence 7899999998888888999999998888888875411 112222 2346899999999999988
Q ss_pred HHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005115 510 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 589 (714)
Q Consensus 510 L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~ 589 (714)
...+..++. +|- -|-.-........+ +....+....++.+++.|++.|++ +.|.+.|+++-.
T Consensus 406 w~~~~~m~~----~~g---LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAH----HFG---LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHH----HTT----EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHh----hcC---cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 887776665 331 11111111111111 223344556788999999999985 889999988877
Q ss_pred HHHHH
Q 005115 590 VFETR 594 (714)
Q Consensus 590 ~~~~~ 594 (714)
.+..+
T Consensus 468 ~l~~~ 472 (557)
T PF06917_consen 468 NLFEQ 472 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 112
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.74 E-value=0.0017 Score=66.55 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=45.3
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
++||.+|+.|..- + +++++...+ .+.-|+||.++.|++.+.| |..+.|+.+|+. +|+.+
T Consensus 31 a~wC~~C~~~~p~-l--~~la~~~~~~~i~~v~vd~~~~~~l~~~~--------~V~~~Pt~~~f~-~g~~~ 90 (215)
T TIGR02187 31 KEGCQYCKETEQL-L--EELSEVSPKLKLEIYDFDTPEDKEEAEKY--------GVERVPTTIILE-EGKDG 90 (215)
T ss_pred CCCCCchHHHHHH-H--HHHHhhCCCceEEEEecCCcccHHHHHHc--------CCCccCEEEEEe-CCeee
Confidence 4999999999853 3 235544432 3667889999999999999 899999999987 56654
No 113
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.69 E-value=0.14 Score=59.16 Aligned_cols=291 Identities=17% Similarity=0.166 Sum_probs=159.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEee
Q 005115 237 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 316 (714)
Q Consensus 237 ~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~W 316 (714)
.-.|+-||-.. +.|-.++-||.+++|+.|++.|.+..+-|+.-+..|.|==|+..+-... . .....|
T Consensus 148 ~~~vsvFEttI----R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--------~-~~~~~~ 214 (522)
T PTZ00470 148 GLGVSVFETTI----RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--------R-KSYPGW 214 (522)
T ss_pred CCeeeeeeeeh----hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--------C-CCCccc
Confidence 34567898655 4888899999999999999999999999998887776644443332210 0 000011
Q ss_pred chHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCc-hHHHHhcCCC-HHHHHHHHHHHHHHHH
Q 005115 317 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLF 394 (714)
Q Consensus 317 t~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~-~~~a~~~g~~-~~~~~~~l~~~r~~L~ 394 (714)
.. +..++.-..++ -|+.....++ ..+..+..+.+.+.|.
T Consensus 215 ~~---------------------------------------~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~ 255 (522)
T PTZ00470 215 AG---------------------------------------GCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALF 255 (522)
T ss_pred CC---------------------------------------CccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 10 00011100000 0111111111 2234455566666666
Q ss_pred hhhhcCCCCCCCcchhh-----------chHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005115 395 DVRSKRPRPHLDDKVIV-----------SWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 460 (714)
Q Consensus 395 ~~R~~R~~P~~DdKilt-----------~WNal~---I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l 460 (714)
+.|.. .|.+=...|- +|-|+. -.=|.+.+..++.. .+.|.++-..+++-+
T Consensus 256 ~~~~~--~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i 319 (522)
T PTZ00470 256 SMKPA--INGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGI 319 (522)
T ss_pred hcCCC--CCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHH
Confidence 54322 1221111111 121211 12366777777531 267888888888888
Q ss_pred HHhcccc-CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcccccCCc-
Q 005115 461 RRHLYDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG- 531 (714)
Q Consensus 461 ~~~l~d~-~~G~l~~~~~~g~~~~~~~l~DyA~li~all~Lyea-------Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg- 531 (714)
.+|+... .++.++-.-.+|.. .....+--+.++-|++.|.-. ..+++|++.|++|.+.+...+....+|-
T Consensus 320 ~~~l~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~ 398 (522)
T PTZ00470 320 IEHLYKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLG 398 (522)
T ss_pred HHHhcccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 8887532 22333332222221 222234445666778777642 2356899999999999988775444442
Q ss_pred ---cccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005115 532 ---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 605 (714)
Q Consensus 532 ---ff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~~~~~ 605 (714)
|...... ..... ...|...+= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.+++.+
T Consensus 399 PE~~~~~~~~-~~~~~---~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 399 PEIFHFDPNS-GDISP---NVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred CceEEeccCc-ccccc---ccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 2221110 00000 001111100 12588899999999996 899999999999986654 567776654
No 114
>PLN00119 endoglucanase
Probab=96.69 E-value=0.037 Score=63.34 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 493 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~~~l~DyA~l 493 (714)
+-+..|||.|++++.+- ...| ..++|+.|+++++|..++- |. +... ..+...... ...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~~~~~~~~g~Y~s-s~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----GL-YQNSIPNAGGFYAS-SGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----Cc-ccCCCCCCCCCCCC-CchhhHH
Confidence 77888999999999861 0011 1467999999999998741 21 1110 011111000 1223457
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 005115 494 ISGLLDLYEFGSGTKWLVWAIE 515 (714)
Q Consensus 494 i~all~LyeaTgd~~~L~~A~~ 515 (714)
++|.++||.+|||..|++.+..
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 8999999999999999987653
No 115
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.66 E-value=0.0027 Score=58.92 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=20.1
Q ss_pred CCCCcCceEEeCCCCcccccc-cccC
Q 005115 68 GGGGWPLSVFLSPDLKPLMGG-TYFP 92 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~~-ty~p 92 (714)
|..++|+++|++++|+++..- ++++
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccCC
Confidence 788999999999999988552 3444
No 116
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.65 E-value=0.0022 Score=56.93 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC--CcCceEEeCCC-Ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD-LKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~--g~P~~vfl~p~-g~p 84 (714)
.+++||.-|+.|... | .+||+.++..+.-++||.++.+++.+.| |.. ++|+.+++..+ |+.
T Consensus 19 f~~~~~~~~~~~~~~-~--~~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 19 FYNKDDSESEELRER-F--KEVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred EEcCChhhHHHHHHH-H--HHHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecccccc
Confidence 578999999998854 4 3788888888999999999998888877 776 99999999884 444
No 117
>PLN02309 5'-adenylylsulfate reductase
Probab=96.63 E-value=0.0039 Score=70.74 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=45.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCC-CCccHHH-HHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-ERPDVDK-VYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~e-e~p~i~~-~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
..|++||+.|+.|+.. |+ ++++.++ +++..++||.+ +..++.+ .| ++.++|+++|+.+..
T Consensus 371 ~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~~~la~~~~--------~I~~~PTil~f~~g~ 433 (457)
T PLN02309 371 VLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILLFPKNS 433 (457)
T ss_pred EEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcchHHHHhhC--------CCceeeEEEEEeCCC
Confidence 3699999999999865 55 6777775 45889999998 5445443 34 788999999996543
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.63 E-value=0.0018 Score=72.88 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.||+||+.|+.|..+- .++++.++. ++..++||.++.+++.+.| |..|+|+.+|+. +|++
T Consensus 25 f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~~ 87 (462)
T TIGR01130 25 FYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY--------GVSGYPTLKIFR-NGED 87 (462)
T ss_pred EECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC--------CCccccEEEEEe-CCcc
Confidence 6999999999998764 346666654 3788999999998888877 889999888875 5554
No 119
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.60 E-value=0.2 Score=54.84 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHH
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 495 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~~~~~~l~DyA~li~ 495 (714)
++++|..++..+++ +++.+.+.++.+++.+.. . +.|.+.....+. ......+...-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~-~~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-F-PSGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-c-cCCCCCCccCCCCCCccccccCCCchHHH
Confidence 46678888887766 789999999999998763 3 234332211111 1111234444445678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 005115 496 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 575 (714)
Q Consensus 496 all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~ 575 (714)
+++.++++++|+++.+.+....+.+.+. | +... +..+ . .| -+|| +..|++++..|++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~---~~~l----C---HG--~~G~---~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLKK---GPGL----C---HG--IAGN---AYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-CccC---CCcc----c---cC--ccch---HHHHHHHHHHhCc-
Confidence 8999999999999999998887765322 1 1100 0000 0 01 1333 5788999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 005115 576 KSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 576 ~~~~y~e~A~~~l~~~~~~i~ 596 (714)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999888887665543
No 120
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.60 E-value=0.0092 Score=63.41 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 496 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~a 496 (714)
+|..|++||+|+++ ++|++.|.++++-+++.-.-..+-++-| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G--N-----aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G--N-----AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C--c-----hhh
Confidence 67889999999997 8999999999999876422111112332 211 1 1 356
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 497 LLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 497 ll~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
+|.||++|+|.+||.+|.+.++.+.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 778999999999999999999998765
No 121
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.59 E-value=1 Score=55.33 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
+=++++|+.+++++++ ++|++.|.++.++...++... .+.+. ..++.....++....+=.+
T Consensus 646 sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~~-~~~w~--~~~~~~~~~~WChG~~GI~ 706 (825)
T cd04792 646 SGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSEE-GWNWP--RKDGNSFSAAWCHGAPGIL 706 (825)
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCHh-hcCCC--CcCcCCCCCcccCCcHHHH
Confidence 3368899999999988 899999999999876654331 11111 1111222346677777788
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 005115 495 SGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 572 (714)
Q Consensus 495 ~all~Lyea--Tgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt 572 (714)
.+++.++++ ..++.+.+.+.++.+.+..... .. +. ..--|++=.+..|+.++..+
T Consensus 707 lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~-------~~----~~------------slCHG~~Gil~~ll~~~~~~ 763 (825)
T cd04792 707 LARLELLKFNDLDDEELKEEIEIALKTTLKEGF-------GN----NH------------SLCHGDLGNLEILLYAAKAF 763 (825)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC-------CC----CC------------eecCCCcchHHHHHHHHHhc
Confidence 999999999 6788888888887776654321 00 00 01123333456788888888
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Q 005115 573 AGSKSDYYRQNAEHSLAVFETRLKD 597 (714)
Q Consensus 573 ~~~~~~~y~e~A~~~l~~~~~~i~~ 597 (714)
++ ++|.+.++++...+.....+
T Consensus 764 ~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 764 GD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred CC---HHHHHHHHHHHHHHHHHHHh
Confidence 85 67888888877766655543
No 122
>PLN02613 endoglucanase
Probab=96.56 E-value=0.03 Score=64.25 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=106.7
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHc-cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSL-TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 299 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~-t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs 299 (714)
.+-||+|- ..=++..---|-|-=+.|.+.|.+ ++.. .+.|.+++.++=.++||++ |+.+.++||.-. .|.
T Consensus 69 DlsGGwyD----AGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llk-m~~~~~~~~~QV-Gdg 142 (498)
T PLN02613 69 NLTGGYYD----AGDNVKFGWPMAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILR-AHTSPTTLYTQV-GDG 142 (498)
T ss_pred cCCCCcee----CCCCceecCchHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHH-hccCCCeEEEEe-CCC
Confidence 57788884 333344334577777888888754 4543 3468899999999999998 777778888632 222
Q ss_pred ccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCH
Q 005115 300 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 379 (714)
Q Consensus 300 ~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~ 379 (714)
.. .|+ .|...|.. . ..+.+...
T Consensus 143 ~~----dH~------~W~~Pe~~---------------------------~------~~R~~~~~--------------- 164 (498)
T PLN02613 143 NA----DHQ------CWERPEDM---------------------------D------TPRTLYKI--------------- 164 (498)
T ss_pred Cc----ccc------ccCCcccc---------------------------C------CCCeeEec---------------
Confidence 00 011 13211100 0 00000000
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005115 380 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 459 (714)
Q Consensus 380 ~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~ 459 (714)
....|. |+.-+-+..|||.|++++++. ...| ..++|+.|+++++|
T Consensus 165 -------------------t~~~pg------Td~a~~~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~~ 209 (498)
T PLN02613 165 -------------------TSSSPG------SEAAGEAAAALAAASLVFKDV--DSSY--------SSKLLNHARSLFEF 209 (498)
T ss_pred -------------------CCCCCc------cHHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHH
Confidence 001122 233477899999999999861 0011 14679999999999
Q ss_pred HHHhccccCCCeEEEEecCCCC---CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005115 460 IRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 515 (714)
Q Consensus 460 l~~~l~d~~~G~l~~~~~~g~~---~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~ 515 (714)
..++= |.+. +..+ ...++.|+ +++|.++||.+|||+.|++.+..
T Consensus 210 a~~~~-----g~y~----~~~~~y~s~s~~~DE---l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 210 ADKYR-----GSYQ----ASCPFYCSYSGYQDE---LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred HHhCC-----CCcC----CCCCcccccCccchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 98751 2111 1111 01234455 56689999999999999987764
No 123
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.54 E-value=0.0038 Score=62.10 Aligned_cols=60 Identities=7% Similarity=-0.000 Sum_probs=44.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||..|++|..- |+ ++++.. .+..-||||.++. ++...| +..++|+.+|+- +|+.+.
T Consensus 90 Fya~wc~~Ck~m~~~-l~--~LA~~~-~~vkF~kVd~d~~-~l~~~f--------~v~~vPTlllyk-~G~~v~ 149 (175)
T cd02987 90 IYEPGIPGCAALNSS-LL--CLAAEY-PAVKFCKIRASAT-GASDEF--------DTDALPALLVYK-GGELIG 149 (175)
T ss_pred EECCCCchHHHHHHH-HH--HHHHHC-CCeEEEEEeccch-hhHHhC--------CCCCCCEEEEEE-CCEEEE
Confidence 799999999999853 22 334333 2466788888876 777777 788999888776 788874
No 124
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.53 E-value=0.23 Score=59.45 Aligned_cols=221 Identities=20% Similarity=0.220 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEec----C-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV----D-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRD 275 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsv----D-~~W~vPHFEKMLyD-NA~ll~~y~~Ay~~t~d~~y~~~A~~ 275 (714)
++....+|..--+.|...+|.-...+-..+..+ + ..|.+--.---||| -|-++..|+-..++||...|+++|.+
T Consensus 595 ~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~ 674 (963)
T COG4403 595 NEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIK 674 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHH
Confidence 345556666666666666666555444444222 3 56776445566788 88888888999999999999999999
Q ss_pred HHHHHHHhccCC-----CCceeeeccCCCccccCcccccCCceEe-echHHHHHHhhhhHHHHHHHhcccCCCCcCCCCC
Q 005115 276 ILDYLRRDMIGP-----GGEIFSAEDADSAETEGATRKKEGAFYV-WTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRM 349 (714)
Q Consensus 276 ~~~fl~~~m~~p-----~Ggfysa~DADs~~~~~~~~~~EG~yY~-Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~ 349 (714)
++.=+.+.+... -|||. |--|-||. |. |.++.+
T Consensus 675 ~L~~~~~sv~~~~~~~~iga~~---------------G~~g~~yal~~---I~~~~~----------------------- 713 (963)
T COG4403 675 ALQDSRKSVNNNLNPINIGAFT---------------GLSGYFYALWK---IYSVTR----------------------- 713 (963)
T ss_pred HHHHHHHhhhhccCCccccccc---------------ccchhhhhhHH---HHHhcc-----------------------
Confidence 998888876542 13332 22344442 22 111111
Q ss_pred CCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHH--HHHHhhhhcCCCCCCCcchhhchHHH--HHHHHHHHH
Q 005115 350 SDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECR--RKLFDVRSKRPRPHLDDKVIVSWNGL--VISSFARAS 425 (714)
Q Consensus 350 ~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r--~~L~~~R~~R~~P~~DdKilt~WNal--~I~aLa~a~ 425 (714)
.+.| .+...+.++ ..+.++ . .-| -+ -||+ +|..|...|
T Consensus 714 ---------~~~l-------------------~~~~~~~i~~le~~v~~--~-~~~----d~---i~Gl~g~i~~L~~iY 755 (963)
T COG4403 714 ---------DNYL-------------------IQSAENSIRHLEILVQK--S-KDP----DF---INGLAGVICVLVSIY 755 (963)
T ss_pred ---------cHHH-------------------HHHHHHHHHHHHHHHhh--c-cCc----ch---hhccHHHHHHHHHHH
Confidence 1111 111112222 222221 1 112 11 2444 577888999
Q ss_pred HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC
Q 005115 426 KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTg 505 (714)
+.+.+ |+.++.|..+.+.+.+.....+. .+....++...-+-.|.+|+.+|++|+
T Consensus 756 k~~~e----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~ 810 (963)
T COG4403 756 KLTDE----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATG 810 (963)
T ss_pred hhccc----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcC
Confidence 98776 89999999999999877654221 112345778888999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccc
Q 005115 506 GTKWLVWAIELQNTQDELFLD 526 (714)
Q Consensus 506 d~~~L~~A~~L~~~~~~~F~D 526 (714)
++.+++.+.++...-..+|.+
T Consensus 811 e~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 811 EESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887777755
No 125
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.48 E-value=0.0066 Score=54.94 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=42.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc-cHHH---HH---------HHHHHHhcCCCCcCceEEeC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDK---VY---------MTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p-~i~~---~y---------~~~~q~~~g~~g~P~~vfl~ 79 (714)
.+++||+.|+.|... ++ ++.+.....+..|.+- +..+ +..+ .+ -..+....|..++|++++++
T Consensus 28 F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~vid 103 (114)
T cd02967 28 FLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAVLLD 103 (114)
T ss_pred EECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEEEEC
Confidence 579999999998644 32 2444444444444442 2221 1111 11 01222334778899999999
Q ss_pred CCCcccccc
Q 005115 80 PDLKPLMGG 88 (714)
Q Consensus 80 p~g~p~~~~ 88 (714)
++|+..+.+
T Consensus 104 ~~G~v~~~~ 112 (114)
T cd02967 104 EAGVIAAKG 112 (114)
T ss_pred CCCeEEecc
Confidence 999988754
No 126
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.47 E-value=0.0031 Score=71.62 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=42.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCC--ccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~--p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
..|++||+.|+.|... | +++++.+... ...++||.+.. +.+.+.| ++.++|+.+|+....
T Consensus 377 ~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~--------~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 377 VLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILFFPKHS 439 (463)
T ss_pred EEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHc--------CCCccceEEEEECCC
Confidence 4799999999999865 5 6778777543 45556666543 2333455 788999999997653
No 127
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.45 E-value=2.5 Score=50.28 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCCh----------------hHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHH
Q 005115 152 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP----------------VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQC 215 (714)
Q Consensus 152 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~----------------~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ 215 (714)
.....+--|+...|..+|++=-+|-+|.. ....-|+... ..+.+.+.|+-
T Consensus 257 ~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G--------------~~~~a~~~l~~ 322 (616)
T TIGR01577 257 LYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAG--------------YHDRVDRFFRW 322 (616)
T ss_pred HHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCC--------------CHHHHHHHHHH
Confidence 34444455677788888887667776521 0111111111 12334444555
Q ss_pred HHhCCCcccCCCcEEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHhc
Q 005115 216 MAKGGIHDHVGGGFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFY----SYICRDILDYLRRDM 284 (714)
Q Consensus 216 m~~GGi~D~v~GGF~RYsvD~~W~v-PHFEKMLyDNA~ll~~y~~Ay~~t~d~~y----~~~A~~~~~fl~~~m 284 (714)
|.+ ....-|+..++|.+|..... +| ..-+-..|..|++..+.++.|+|..+ ...++.+++|+.+..
T Consensus 323 l~~--~q~~~G~~~~~~~~dG~~~~~~~-~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 323 AMQ--TQSRDGSWQQRYYLNGRLAPLQW-GLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred HHH--hhCcCCCcceEEecCCCCCCCCC-CccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 554 12223334677878865432 22 33333378888888888899998644 456789999998843
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.41 E-value=0.0033 Score=58.57 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc-------cHHHHHHHHHHHhcCCC-CcCceEEeCCCCccc
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-------DVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPL 85 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p-------~i~~~y~~~~q~~~g~~-g~P~~vfl~p~g~p~ 85 (714)
.+||+.|++|+.. ++ ++++....+..-|+||.++.| ++...| +.. |.|+.+++.. |+.+
T Consensus 37 ~~WC~pCr~~~P~-l~--~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~--------~I~~~iPT~~~~~~-~~~l 103 (119)
T cd02952 37 QSWCPDCVKAEPV-VR--EALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP--------KLTTGVPTLLRWKT-PQRL 103 (119)
T ss_pred CCCCHhHHhhchh-HH--HHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc--------CcccCCCEEEEEcC-Ccee
Confidence 3999999999853 22 245545446677888887765 444444 566 9999999954 4444
No 129
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.35 E-value=0.0034 Score=60.61 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=44.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHH---Hhc--------ccEEEEEcCCCCccHHHHHH-----------------HHHH
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKL---LND--------WFVSIKVDREERPDVDKVYM-----------------TYVQ 64 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~---ln~--------~Fv~vkvD~ee~p~i~~~y~-----------------~~~q 64 (714)
.-|+||+.|+..-. .+.++ +++ .|..|-|+.++.+..-+.|. ..+.
T Consensus 32 FwAsWCppCr~e~P------~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~ 105 (146)
T cd03008 32 FGAVVSPQCQLFAP------KLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELE 105 (146)
T ss_pred EECCCChhHHHHHH------HHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHH
Confidence 46899999998653 23332 332 47777777765433211111 1222
Q ss_pred HhcCCCCcCceEEeCCCCccccc
Q 005115 65 ALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 65 ~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
...|..|.|++++++|+|+++..
T Consensus 106 ~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 106 AQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHcCCCCCCEEEEECCCCcEEee
Confidence 34478899999999999999965
No 130
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.24 E-value=2.2 Score=45.71 Aligned_cols=134 Identities=12% Similarity=-0.017 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchHHHHH
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~--~~~g~~~~~~~l~DyA~li 494 (714)
++.+|+.+++.+.+ +.+.+.++.+..++.+...+ . +..++. ..++.....++...-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 67788999988855 56777777777766655433 2 323221 1112223345666667788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
.+++.+++.++++.+.+.+.+..+.+.+..... . .+...=.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------L------------KNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------C------------CCCCcCcCccchHHHHHHHHHHhCC
Confidence 999999999999999999999888876654321 0 0112223445566778889999985
Q ss_pred CCchHHHHHHHHHHHHHH
Q 005115 575 SKSDYYRQNAEHSLAVFE 592 (714)
Q Consensus 575 ~~~~~y~e~A~~~l~~~~ 592 (714)
+.+++.++.+.....
T Consensus 285 ---~~~~~~a~~~~~~~~ 299 (343)
T cd04434 285 ---LKFLARALALALLLI 299 (343)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 678888877665443
No 131
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.24 E-value=0.0042 Score=60.57 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.3
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|..++|++++++++|+++..
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEE
Confidence 378899999999999998844
No 132
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.23 E-value=0.0057 Score=65.04 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=41.9
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHH--HHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV--YMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~--y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
-..|++||..|+.|.... .++++..+-.++.|.+|.+..|.+... -....+. .|+.++|+++|++++|+.+
T Consensus 171 v~F~AswCp~C~~~~P~L---~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~-~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 171 FFFFKSDCPYCHQQAPIL---QAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQ-LKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred EEEECCCCccHHHHhHHH---HHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHH-cCCCcCCeEEEEECCCCEE
Confidence 357899999999987432 233333333466677776543211100 0111122 2889999999999965543
No 133
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.21 E-value=0.0049 Score=47.47 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=44.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 81 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~ 81 (714)
.+.+||.+|+.+.....+. +..+.++..+.+|.++.++.... ..-.+..+.|+++|..++
T Consensus 4 ~~~~~c~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 4 FYAPWCPFCQALRPVLAEL----ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EECCCChhHHhhhhHHHHH----HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 4678999999987543322 46788999999999988776543 112367889999998877
No 134
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.20 E-value=0.0084 Score=52.88 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=38.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCC-ccHHHHH---------------HHHHHHhcCCCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVY---------------MTYVQALYGGGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~-p~i~~~y---------------~~~~q~~~g~~g~P~~ 75 (714)
.+++||..|+.+... +.+ +.+.+. .++..+.|+.+.. ++--+.| ....+ ..|..++|.+
T Consensus 26 f~~~~C~~C~~~~~~-l~~--~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~ 101 (116)
T cd02966 26 FWASWCPPCRAEMPE-LEA--LAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK-AYGVRGLPTT 101 (116)
T ss_pred eecccChhHHHHhHH-HHH--HHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH-hcCcCccceE
Confidence 578899999975422 221 222221 2334444444442 2222112 11122 2366789999
Q ss_pred EEeCCCCccccc
Q 005115 76 VFLSPDLKPLMG 87 (714)
Q Consensus 76 vfl~p~g~p~~~ 87 (714)
++++|+|+.++.
T Consensus 102 ~l~d~~g~v~~~ 113 (116)
T cd02966 102 FLIDRDGRIRAR 113 (116)
T ss_pred EEECCCCcEEEE
Confidence 999999998753
No 135
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.08 E-value=0.014 Score=49.74 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||+||+.+.+- ++.-. ++..|..+.||.++.+.- ...++...+|..++|+.+ + +|+++.+
T Consensus 4 f~~~~Cp~C~~~~~~-L~~~~----i~~~~~~~~v~~~~~~~~---~~~~l~~~~g~~~vP~v~-i--~g~~igg 67 (84)
T TIGR02180 4 FSKSYCPYCKKAKEI-LAKLN----VKPAYEVVELDQLSNGSE---IQDYLEEITGQRTVPNIF-I--NGKFIGG 67 (84)
T ss_pred EECCCChhHHHHHHH-HHHcC----CCCCCEEEEeeCCCChHH---HHHHHHHHhCCCCCCeEE-E--CCEEEcC
Confidence 468999999997732 22211 223377777887654322 222334456888999974 4 5666643
No 136
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.03 E-value=0.038 Score=63.85 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCC-CCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~-~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
|-..=.+-|||.+|..|+|+.||++|++|.+.+..-| |..+|--+..-. .......... ....+..+.-+.+..-+.
T Consensus 155 EttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~ 232 (522)
T PTZ00470 155 ETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFN 232 (522)
T ss_pred eeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHH
Confidence 3344458999999999999999999999999999888 555553221111 1000000000 012233445556677799
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 567 RLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 567 rL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
+|+++||+ ++|.+.|+++...+..
T Consensus 233 ~LS~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 233 YLSEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHhhCC---HHHHHHHHHHHHHHHh
Confidence 99999996 8899999999988764
No 137
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.01 E-value=0.017 Score=54.20 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=42.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCcc-HHHHHH----------------HHHHHhcCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPD-VDKVYM----------------TYVQALYGGGG 71 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~-i~~~y~----------------~~~q~~~g~~g 71 (714)
..+++||+.|+.+..+ ++ ++.+.+.+ ++..|-|+.|+.++ +.+.+. ..+....|..|
T Consensus 23 ~F~atwC~~C~~~~p~-l~--~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~ 99 (132)
T cd02964 23 YFSASWCPPCRAFTPK-LV--EFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEG 99 (132)
T ss_pred EEECCCCchHHHHHHH-HH--HHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCC
Confidence 3579999999987543 11 12233333 34444444444332 211111 12223357899
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|+++|++++|+++..
T Consensus 100 iPt~~lid~~G~iv~~ 115 (132)
T cd02964 100 IPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCEEEEECCCCCEEch
Confidence 9999999999998855
No 138
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.62 E-value=0.017 Score=57.66 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=38.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccH--HHHH---HHHHHHhcC--CCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDV--DKVY---MTYVQALYG--GGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i--~~~y---~~~~q~~~g--~~g~P~~vfl~p~g~p 84 (714)
+.++||++|+.... .+.++-++ .|..|-|+.++.+++ ...+ ....+...| ..++|++++++++|+.
T Consensus 76 FwaswCp~C~~e~P------~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 76 FMQGHCPYCHQFDP------VLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EECCCCHhHHHHHH------HHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 57899999999753 34444333 354444554444211 1111 011222224 3699999999999997
Q ss_pred c
Q 005115 85 L 85 (714)
Q Consensus 85 ~ 85 (714)
+
T Consensus 150 ~ 150 (181)
T PRK13728 150 A 150 (181)
T ss_pred E
Confidence 5
No 139
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.55 E-value=0.017 Score=54.80 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=41.1
Q ss_pred HHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-cccC
Q 005115 32 EGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 92 (714)
Q Consensus 32 ~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-ty~p 92 (714)
+++++.++ ..+..+|||+|+.|++...| |+.|+|+.+|+. ||+++... ++.|
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siPTLl~Fk-dGk~v~~i~G~~~ 112 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFPATLVFT-GGNYRGVLNGIHP 112 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCCEEEEEE-CCEEEEEEeCcCC
Confidence 34666666 34889999999999999999 999999888886 88888442 3444
No 140
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.55 E-value=0.037 Score=46.95 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||+||+.+.+ +.+.++-.|..+.+|.++.. ..+...++.++|..++|.. |+ +|+.+
T Consensus 5 y~~~~Cp~C~~~~~-------~l~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~~~P~v-~~--~g~~i 64 (82)
T cd03419 5 FSKSYCPYCKRAKS-------LLKELGVKPAVVELDQHEDG---SEIQDYLQELTGQRTVPNV-FI--GGKFI 64 (82)
T ss_pred EEcCCCHHHHHHHH-------HHHHcCCCcEEEEEeCCCCh---HHHHHHHHHHhCCCCCCeE-EE--CCEEE
Confidence 35799999999773 23445556777777776541 2223345567788999996 55 35565
No 141
>PLN02175 endoglucanase
Probab=95.52 E-value=0.3 Score=55.91 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCC---CCCcchH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKA---PGFLDDY 490 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~~~---~~~l~Dy 490 (714)
+-+..|||.|++++++- ...|. .++|+.|+++++|..++- |.+..+...+ .+.. .++.|
T Consensus 172 ae~AAALAaaS~vfk~~--D~~YA--------~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~D-- 234 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKYS--------RLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKD-- 234 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHHH--------HHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccH--
Confidence 77889999999999861 00111 457999999999998742 2221110000 0111 23334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 005115 491 AFLISGLLDLYEFGSGTKWLVWAIE 515 (714)
Q Consensus 491 A~li~all~LyeaTgd~~~L~~A~~ 515 (714)
.+++|.++||.+|||..|++.+..
T Consensus 235 -El~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 235 -ELMWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 457889999999999999986644
No 142
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.40 E-value=0.28 Score=53.66 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 496 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~a 496 (714)
++.+|..+++++++ +++.+.|+++.+.+.+.-.-..+.++.| |. +=.+.+
T Consensus 229 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G~----------~G~~~~ 278 (343)
T cd04794 229 IVYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----GI----------AGNAYA 278 (343)
T ss_pred HHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----Cc----------cchHHH
Confidence 34567788899887 7899999998887653311101113332 22 224689
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 497 LLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 497 ll~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
|+.+|+.|++++|+++|..+++.+.+...
T Consensus 279 lL~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 279 FLLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999987753
No 143
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=95.39 E-value=1.9 Score=46.40 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
+++.+++...++++.. |-+-+|||.= |. +-.=-....|..+.++.+|-+.. +.-..+.+++++||.+
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------WK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------CC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4788888888888876 6778899953 31 11334567999999999997654 2335789999999998
Q ss_pred hccCCCCceee
Q 005115 283 DMIGPGGEIFS 293 (714)
Q Consensus 283 ~m~~p~Ggfys 293 (714)
. +.++|+|-.
T Consensus 115 ~-Q~~dG~f~e 124 (297)
T cd02896 115 N-QKPDGSFQE 124 (297)
T ss_pred c-CCCCCeeCC
Confidence 5 889998864
No 144
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.38 E-value=0.012 Score=64.00 Aligned_cols=249 Identities=16% Similarity=0.198 Sum_probs=142.3
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCCccccCcccccCCceEeechHHHH
Q 005115 247 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 322 (714)
Q Consensus 247 LyD-NA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p---~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~ 322 (714)
||+ -|=++..|.++++.++|+.|.+.+.+.++.+.+.+... ..|+|. |.-|-. |..
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi~--~~l---- 66 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGIA--YAL---- 66 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHHH--HHH----
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHHH--HHH----
Confidence 455 67788999999999999999999999999998876542 222222 100100 110
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 005115 323 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 402 (714)
Q Consensus 323 ~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~ 402 (714)
.-+...+ -....+.+.++.+.+.+.+.......
T Consensus 67 -------------~~~~~~~----------------------------------~~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 67 -------------SYLSKRL----------------------------------GDEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp -------------HHHCCCT----------------------------------CHHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred -------------HHHHHhc----------------------------------cchHHHHHHHHHHHHHHHHhhhhccc
Confidence 0011110 01122334555555544443333221
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 005115 403 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 480 (714)
Q Consensus 403 P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~--~G~l~~~~~~g~ 480 (714)
...| ++..- +=++..|...++.+++ +++++.+.+..+.|.+....-. .-.+...+. ..
T Consensus 100 ~~~D--~l~G~-aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 NDYD--LLSGL-AGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GGCS--TTTSH-HHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred ccch--hhccc-HHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 1111 22222 2346666667777765 7888888888888876665310 000100011 11
Q ss_pred CCCCCCcchHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHH
Q 005115 481 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 559 (714)
Q Consensus 481 ~~~~~~l~DyA~li~all~Ly-eaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~ns 559 (714)
....|+....+=.+.+|+.+| +.+.++++.+.+.++.+...+++... .++|......... +. -..--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD-DGGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG-CCT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc-cCCCCCCCCcccc-----cc--ccccccCcH
Confidence 223588999999999999999 69999999999999999998887543 3445443221100 00 123355777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 560 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 560 vaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
=++.++.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 788888889998864 7888888887777655
No 145
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.28 E-value=0.036 Score=62.45 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=45.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.||+||+.|+.|.... .++++.++. ++..+++|.++. ++.. | +..++|+.+|+...++
T Consensus 371 f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~--------~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 371 FYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATAN-DVPP-F--------EVEGFPTIKFVPAGKK 431 (462)
T ss_pred EECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCC-ccCC-C--------CccccCEEEEEeCCCC
Confidence 6899999999998654 557888876 788999999875 3333 4 6789999999965544
No 146
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.24 E-value=0.037 Score=48.36 Aligned_cols=69 Identities=22% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCc-cHHHHH----------------HHHHHHhcCCCCcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERP-DVDKVY----------------MTYVQALYGGGGWP 73 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p-~i~~~y----------------~~~~q~~~g~~g~P 73 (714)
..++||..|...-...- ++.+.++ ++|..|-|..++.. +..+.. ...+....+..++|
T Consensus 8 fwa~~c~~c~~~~~~l~---~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 8 FWASWCPPCKKELPKLK---ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EE-TTSHHHHHHHHHHH---HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EECCCCHHHHHHHHHHH---HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 46899999988654421 2444444 56555555554431 111111 22334445888999
Q ss_pred ceEEeCCCCcc
Q 005115 74 LSVFLSPDLKP 84 (714)
Q Consensus 74 ~~vfl~p~g~p 84 (714)
+.++++|+|+.
T Consensus 85 ~~~lld~~G~I 95 (95)
T PF13905_consen 85 TLVLLDPDGKI 95 (95)
T ss_dssp EEEEEETTSBE
T ss_pred EEEEECCCCCC
Confidence 99999999974
No 147
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=95.18 E-value=8.2 Score=46.14 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=43.8
Q ss_pred CCcEEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 226 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 226 ~GGF~RYsv-D~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~--d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
.||+- |+. +..|.+. -|-|..+.+++.+....+ ++.+.++++++++||++ |++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~------d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDS------DDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCc------CchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56765 553 3334333 267888898888776653 56788999999999996 7999999854
No 148
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.016 Score=59.80 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||+.|+..+ -.|++ .+... ..+|-.|||.||-..++.-| |+...||.+|.- +|.-+
T Consensus 27 dfta~wCGPCk~Ia-P~Fs~--lankY-p~aVFlkVdVd~c~~taa~~--------gV~amPTFiff~-ng~ki 87 (288)
T KOG0908|consen 27 DFTASWCGPCKRIA-PIFSD--LANKY-PGAVFLKVDVDECRGTAATN--------GVNAMPTFIFFR-NGVKI 87 (288)
T ss_pred EEEecccchHHhhh-hHHHH--hhhhC-cccEEEEEeHHHhhchhhhc--------CcccCceEEEEe-cCeEe
Confidence 47999999999987 34443 12222 68999999999988888777 899999999986 44544
No 149
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.13 E-value=0.032 Score=46.53 Aligned_cols=60 Identities=18% Similarity=0.054 Sum_probs=36.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~-g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.|..- .+.++-.|. .+|.++.++....+ ..++ |..++|+. + -.+|+++..
T Consensus 5 y~~~~C~~C~~~~~~-------L~~~~~~~~--~idi~~~~~~~~~~----~~~~~~~~~vP~i-~-~~~g~~l~~ 65 (77)
T TIGR02200 5 YGTTWCGYCAQLMRT-------LDKLGAAYE--WVDIEEDEGAADRV----VSVNNGNMTVPTV-K-FADGSFLTN 65 (77)
T ss_pred EECCCChhHHHHHHH-------HHHcCCceE--EEeCcCCHhHHHHH----HHHhCCCceeCEE-E-ECCCeEecC
Confidence 468999999997642 223333343 46666655544333 4455 88999985 3 347777653
No 150
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.07 E-value=0.021 Score=53.05 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.8
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|..++|++++++++|++++.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEE
Confidence 367889999999999998754
No 151
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.01 E-value=0.17 Score=57.89 Aligned_cols=165 Identities=11% Similarity=0.052 Sum_probs=105.2
Q ss_pred hhchHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe--cC-CCCCC-
Q 005115 410 IVSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RN-GPSKA- 483 (714)
Q Consensus 410 lt~WNal~I~aLa~a~~~~--~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~--~~-g~~~~- 483 (714)
+-.-+.+++.+|.-||.++ ++ +.+|+.|+++++.|...+..+ +|--+... +. +....
T Consensus 75 ~fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF~t~-~g~P~~~~n~~~~~~~~~~ 137 (452)
T PF01532_consen 75 VFETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAFDTP-TGIPYPRVNLRTGGKNRWP 137 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGGSSS-SS---SEEETTTCEEETTC
T ss_pred hHHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhccCC-CccccceeeecccCCCCCC
Confidence 3345688999999999999 77 789999999999999888543 55333222 22 11111
Q ss_pred --CCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc-ccCCc---cccCCCCCCccccccccCCCCCCCCh
Q 005115 484 --PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD-REGGG---YFNTTGEDPSVLLRVKEDHDGAEPSG 557 (714)
Q Consensus 484 --~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D-~~~Gg---ff~t~~~~~~li~r~k~~~D~a~PS~ 557 (714)
...+.+.+-++.=+..|.+.|||++|.+.|.++.+.+.+.-.. +..|- +++.... .... ......+
T Consensus 138 ~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g--~~~~------~~~~~Ga 209 (452)
T PF01532_consen 138 GGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTG--KWTS------SSISLGA 209 (452)
T ss_dssp CGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS---BSS------TEE-SST
T ss_pred CCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcC--cccc------cccccCC
Confidence 1235666778888999999999999999999999998762210 01222 1222111 1100 0111222
Q ss_pred HH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005115 558 NS-VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 600 (714)
Q Consensus 558 ns-vaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~ 600 (714)
++ ..-+.|++.+.++|.. ++.|++.-.+.++.+...+...|.
T Consensus 210 ~~DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 210 GGDSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp TTHHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred CcchHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 22 4678899999999953 377888888888877777654433
No 152
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.93 E-value=0.04 Score=55.31 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH-------------HHHHhcCCCCcCceEEeC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT-------------YVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~-------------~~q~~~g~~g~P~~vfl~ 79 (714)
.+++||+.|+.+... ++ ++.+..+.++|.|-.| +..+.. .|+. -+....|..+.|.+++++
T Consensus 81 F~atwCp~C~~~lp~-l~--~~~~~~~~~vv~Is~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID 154 (189)
T TIGR02661 81 FTAPSCPVCDKLFPI-IK--SIARAEETDVVMISDG--TPAEHR-RFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLD 154 (189)
T ss_pred EECCCChhHHHHHHH-HH--HHHHhcCCcEEEEeCC--CHHHHH-HHHHhcCCCcceeechhHHHHhccCCccceEEEEC
Confidence 579999999987543 21 2333334456666533 211221 1110 111234788999999999
Q ss_pred CCCcccccc
Q 005115 80 PDLKPLMGG 88 (714)
Q Consensus 80 p~g~p~~~~ 88 (714)
++|+..+.+
T Consensus 155 ~~G~I~~~g 163 (189)
T TIGR02661 155 QDGKIRAKG 163 (189)
T ss_pred CCCeEEEcc
Confidence 999998653
No 153
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.89 E-value=0.036 Score=69.49 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=40.8
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEE-----cCCCCc-cHHHHHH-------------HHHHHhcCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKV-----DREERP-DVDKVYM-------------TYVQALYGGGG 71 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkv-----D~ee~p-~i~~~y~-------------~~~q~~~g~~g 71 (714)
...|+||..|+.+...- .++.+..+ ++|+.|.| |.++.+ ++.+... ..+....++.|
T Consensus 426 ~FWAsWC~pC~~e~P~L---~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~ 502 (1057)
T PLN02919 426 DFWTYCCINCMHVLPDL---EFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSS 502 (1057)
T ss_pred EEECCcChhHHhHhHHH---HHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCc
Confidence 36899999999765332 12333332 33655555 332211 1111100 01111237899
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
+|+++|++++|+++..
T Consensus 503 iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 503 WPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cceEEEECCCCeEEEE
Confidence 9999999999998854
No 154
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.025 Score=63.08 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=51.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
-.|++||..|+.+..+.- +++..+...=....||.++.+++-+.| +..|+|+.++..|..+++
T Consensus 53 ~fyapwc~~c~~l~~~~~---~~~~~l~~~~~~~~vd~~~~~~~~~~y--------~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 53 EFYAPWCGHCKKLAPTYK---KLAKALKGKVKIGAVDCDEHKDLCEKY--------GIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred EEECCCCcchhhhchHHH---HHHHHhcCceEEEEeCchhhHHHHHhc--------CCccCcEEEEEcCCCcee
Confidence 469999999999996654 788888773334459999999999999 899999999999993444
No 155
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.71 E-value=0.074 Score=43.45 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=34.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+++.. .|+. .+.-..++|.++.+...+.+ ....|..+.|+.++- |+.+.
T Consensus 5 f~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~----~~~~~~~~vP~~~~~---~~~~~ 62 (74)
T TIGR02196 5 YTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEV----LKVLGQRGVPVIVIG---HKIIV 62 (74)
T ss_pred EcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHH----HHHhCCCcccEEEEC---CEEEe
Confidence 57899999999753 2322 22333455665544332222 223488999988873 66643
No 156
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.65 E-value=0.055 Score=48.67 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..+||+||+.+.+ +-+-++-.|-. +|.++.|+-. .++.++..++|...+|.. |+ +|+.|
T Consensus 14 sk~~Cp~C~~ak~-------~L~~~~i~~~~--vdid~~~~~~-~~~~~l~~~tg~~tvP~V-fi--~g~~i 72 (99)
T TIGR02189 14 SRSSCCMCHVVKR-------LLLTLGVNPAV--HEIDKEPAGK-DIENALSRLGCSPAVPAV-FV--GGKLV 72 (99)
T ss_pred ECCCCHHHHHHHH-------HHHHcCCCCEE--EEcCCCccHH-HHHHHHHHhcCCCCcCeE-EE--CCEEE
Confidence 4699999999764 22333444544 4555555533 344555667788899986 54 45666
No 157
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.51 E-value=1.9 Score=47.84 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
.=++.++..+++++++ +.+.+.|.++.+.+...... .+ .....++....+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 3356677788888887 78999999988776643211 00 112346677788888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
..|+.+|+.|++++|++.|..+.+.+++.+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998764
No 158
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.51 E-value=0.37 Score=55.05 Aligned_cols=232 Identities=16% Similarity=0.127 Sum_probs=139.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEee
Q 005115 239 HVPHFEKMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 316 (714)
Q Consensus 239 ~vPHFEKMLyDNA~ll~~y~~Ay~~t--~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~W 316 (714)
.|.-||- +-+.|..++-||.++ +|+.+++.|.+..+.|+.-+..|.|-.+...+-.+.
T Consensus 72 ~vs~fEt----~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~---------------- 131 (452)
T PF01532_consen 72 TVSVFET----TIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTG---------------- 131 (452)
T ss_dssp EEEHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTC----------------
T ss_pred eechHHh----hhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeeccc----------------
Confidence 4555664 556999999999999 999999999999999999887777766654432110
Q ss_pred chHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 317 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 317 t~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+.- .+.+... -+|+ .
T Consensus 132 -------------------------~~~----------~~~~~~~--------~la~-~--------------------- 146 (452)
T PF01532_consen 132 -------------------------GKN----------RWPGGES--------SLAE-A--------------------- 146 (452)
T ss_dssp -------------------------EEE----------TTCCGEE--------EHHH-H---------------------
T ss_pred -------------------------CCC----------CCCCCcc--------cccc-c---------------------
Confidence 000 0111100 0111 0
Q ss_pred hhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc-cCCCeEEEE
Q 005115 397 RSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD-EQTHRLQHS 475 (714)
Q Consensus 397 R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d-~~~G~l~~~ 475 (714)
|=++-=+.+.++++|+ ++|.+.|.++.+.|.+.-.. +..|.+-..
T Consensus 147 ------------------gs~~lEf~~LS~lTgd----------------~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~ 192 (452)
T PF01532_consen 147 ------------------GSLQLEFTRLSQLTGD----------------PKYFDAADRIYDALWRSQNRSKIPGLFPNF 192 (452)
T ss_dssp ------------------CSSHHHHHHHHHHHS-----------------THHHHHHHHHHHHHHCCCCCHSBTTB-BSE
T ss_pred ------------------ccceechhHHHHHhhc----------------cHHHHHHHHHHHHHHHhhhccCCcccCcce
Confidence 1223335568899998 89999999999999873211 112432222
Q ss_pred e--cCCCC-----CCCCCcchHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcccc--cCC--c-cccCCCC-CC
Q 005115 476 F--RNGPS-----KAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR--EGG--G-YFNTTGE-DP 540 (714)
Q Consensus 476 ~--~~g~~-----~~~~~l~DyA~li~all~LyeaTg--d~~~L~~A~~L~~~~~~~F~D~--~~G--g-ff~t~~~-~~ 540 (714)
. ..|.. ...+..|-| -+-|+..|..+| |+.|++.=.+..+.+.+++.-. ..+ . .|-.... ..
T Consensus 193 id~~~g~~~~~~~~~Ga~~DS~---YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~ 269 (452)
T PF01532_consen 193 IDPSTGKWTSSSISLGAGGDSF---YEYLLKMYLLLGGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGG 269 (452)
T ss_dssp EETTTS-BSSTEE-SSTTTHHH---HHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTT
T ss_pred ecCCcCcccccccccCCCcchH---HHhhhhhhhhcCccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeeccc
Confidence 2 22322 122333332 477888999999 9999999999999998885322 111 2 2221111 00
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 005115 541 SVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 601 (714)
Q Consensus 541 ~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~ 601 (714)
...... .=++-+..+-.++.|+..... ++.+.+.|+++.+.........|.+
T Consensus 270 ~~~~~~-------~~~hLsCF~pG~l~Lg~~~~~--~~~~~~~A~~l~~~C~~~y~~~~tG 321 (452)
T PF01532_consen 270 GGRLSP-------KMDHLSCFLPGMLALGAKLFN--DEGDLELAEELTETCYWLYKSTPTG 321 (452)
T ss_dssp TTEEES-------EEECGGGGHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred Cccccc-------cccchhhcchhHHHHhhcccC--chhHHHHHHHHHHHHHHHHHhcccC
Confidence 000000 112445566677888877664 3789999999999988887777665
No 159
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=94.41 E-value=13 Score=44.48 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 226 GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 226 ~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
.||+- |++...+- --+-|.|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 365 ~GGW~-f~~~~~~~-----pd~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 365 PGGWA-FQFDNVYY-----PDVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred CCccC-CCCCCCCC-----CCchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 56666 56544422 1245788899988776 334567788999999999998 8999999843
No 160
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.33 E-value=0.023 Score=59.84 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=49.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEE---cCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkv---D~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
..|++||..|++++.-- .+|.-.|..-=.|||| |...-|.|++.+ |..|+|++.|+.-+...=|.|
T Consensus 49 dFYAPWC~HCKkLePiW---deVG~elkdig~PikVGKlDaT~f~aiAnef--------giqGYPTIk~~kgd~a~dYRG 117 (468)
T KOG4277|consen 49 DFYAPWCAHCKKLEPIW---DEVGHELKDIGLPIKVGKLDATRFPAIANEF--------GIQGYPTIKFFKGDHAIDYRG 117 (468)
T ss_pred Eeechhhhhcccccchh---HHhCcchhhcCCceeecccccccchhhHhhh--------ccCCCceEEEecCCeeeecCC
Confidence 47999999999987421 3466666666778875 677889999988 999999999998764433443
No 161
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.28 E-value=0.018 Score=54.51 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEE-EcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 91 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~ 91 (714)
..+||+.|.+-= |-+.++...+ =|.|+ +.||+.+++-..|.+ +|....|+.||++.+|+++ |.+.
T Consensus 49 ~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~IP~~I~~d~~~~~l--g~wg 115 (129)
T PF14595_consen 49 TETWCGDCARNV------PVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRSIPTFIFLDKDGKEL--GRWG 115 (129)
T ss_dssp --TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--SSEEEEE-TT--EE--EEEE
T ss_pred ECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCeecCEEEEEcCCCCEe--EEEc
Confidence 568999998743 5566666655 66676 567777776655522 5678899999999999998 4444
Q ss_pred C
Q 005115 92 P 92 (714)
Q Consensus 92 p 92 (714)
|
T Consensus 116 e 116 (129)
T PF14595_consen 116 E 116 (129)
T ss_dssp S
T ss_pred C
Confidence 4
No 162
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.44 Score=49.96 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=98.3
Q ss_pred hhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhc
Q 005115 395 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHL 464 (714)
Q Consensus 395 ~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~----------~~~~yl~~A~~~~~~l~~~l 464 (714)
..|..|..|.+.+.|++.||-.|--++.+=.+- .-||.|.-|. .-.++|+.|-+.++|+.+++
T Consensus 110 gvr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~-------~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~L 182 (377)
T COG4833 110 GVRRRRALPKLTNQFVEGWVDEDGGGIPWRKQD-------QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTL 182 (377)
T ss_pred ceeccccchhHHHhhhhccccccCCcccccccc-------eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhc
Confidence 356677788899999999998776665543321 1123333221 11369999999999999999
Q ss_pred cccCCCeEEEE---ecCCCCCC-CCCcchHHHH--HHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcccccCCccccCC-
Q 005115 465 YDEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT- 536 (714)
Q Consensus 465 ~d~~~G~l~~~---~~~g~~~~-~~~l~DyA~l--i~all~Lye-aTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~- 536 (714)
.|+ +|..+.. ..+|.... ..+.+-+... +++-|.||+ .+...+|+..+-++.....+++.. .|-+-+..
T Consensus 183 id~-DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~g 259 (377)
T COG4833 183 IDP-DGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAG 259 (377)
T ss_pred cCC-CcchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCC
Confidence 996 4544322 12443322 1333333333 458899999 777889999999999999998853 24333222
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 537 GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 537 ~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
..++.++ .++.+.-|.-+..-+.+
T Consensus 260 gGDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 260 GGDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred CCccchh--------------hhHHHHHHHHHHHhcCC
Confidence 2233322 25777777777776654
No 163
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.06 Score=49.00 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.-+||.+||+ .++.|.+ ++-++..|.+|.+++.. ..+.++.-++|+...|..++ .|+-|
T Consensus 20 SKs~C~~c~~-~k~ll~~------~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI---~Gk~i 78 (104)
T KOG1752|consen 20 SKSSCPYCHR-AKELLSD------LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFI---GGKFI 78 (104)
T ss_pred ECCcCchHHH-HHHHHHh------CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEE---CCEEE
Confidence 4589999999 5576666 78899999999987763 33444456789999997544 45555
No 164
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.023 Score=64.60 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=46.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..||+||..|+.+..|- .+-|..|-+ .=--.|||..+.-++.+.| ++.|+||.-|.- +|++
T Consensus 48 eFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gyPTlkiFr-nG~~ 111 (493)
T KOG0190|consen 48 EFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGYPTLKIFR-NGRS 111 (493)
T ss_pred EEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCCCeEEEEe-cCCc
Confidence 36999999999998663 233445554 3445789999888999999 899999986664 6665
No 165
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.09 E-value=7 Score=46.70 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005115 149 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 228 (714)
Q Consensus 149 ~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG 228 (714)
.+.+++++.+.|... |...|+++.. |.+..+..|--+..- . .+. ..+.+.++++.. =++.+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~g-----~--~~~---~~~~~~l~~l~~-~~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVLG-----Y--PDS---PAFKRHLERIDD-FLWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHcC-----C--CCC---HHHHHHHHHHHh-cEEEecCCc
Confidence 456677777777655 7778999874 344444433222211 0 011 234444444433 233344666
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCC
Q 005115 229 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGG 289 (714)
Q Consensus 229 F~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~-~p~G 289 (714)
++. ..+ .--+||-|+.+.++.++... +.+....+++++||.+.=. .+.|
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~g 348 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPG 348 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCC
Confidence 643 111 12388999999999997432 3677889999999987322 4445
No 166
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.80 E-value=0.15 Score=51.20 Aligned_cols=74 Identities=5% Similarity=-0.062 Sum_probs=49.3
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEE------EEEcCCCCccHHHHHH---------------------HHHHHh
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVYM---------------------TYVQAL 66 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~------vkvD~ee~p~i~~~y~---------------------~~~q~~ 66 (714)
-|.||..|+. +.|-+.++=.++|-. +-||.++.+.-...|. ..++..
T Consensus 67 ~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~ 140 (184)
T TIGR01626 67 IAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNA 140 (184)
T ss_pred EecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHh
Confidence 4889999986 346666666677877 7788776543322221 123334
Q ss_pred cCCCCcCce-EEeCCCCccccc-ccccCC
Q 005115 67 YGGGGWPLS-VFLSPDLKPLMG-GTYFPP 93 (714)
Q Consensus 67 ~g~~g~P~~-vfl~p~g~p~~~-~ty~p~ 93 (714)
.|..|.|.+ +|++++|+..+. .+++++
T Consensus 141 ~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 141 WQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred cCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 577899999 799999998865 345543
No 167
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.72 E-value=0.15 Score=41.63 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.+.. .+ +..+-.|..|.+ ++.+...+.| +.+++.+++|+.++ +|+.+.+
T Consensus 5 ~~~~~c~~c~~~~~-~l------~~~~i~~~~~~i--~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~g 63 (73)
T cd02976 5 YTKPDCPYCKATKR-FL------DERGIPFEEVDV--DEDPEALEEL----KKLNGYRSVPVVVI---GDEHLSG 63 (73)
T ss_pred EeCCCChhHHHHHH-HH------HHCCCCeEEEeC--CCCHHHHHHH----HHHcCCcccCEEEE---CCEEEec
Confidence 46799999998652 22 223444554444 4444433333 45668899998876 4555544
No 168
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=93.47 E-value=0.21 Score=56.34 Aligned_cols=271 Identities=18% Similarity=0.221 Sum_probs=121.0
Q ss_pred HHHHHHHhCCCcccCCCcEEE---Eec------CCCCC--CCCCc-hhHH-HHHH--HHHHHHHHHHccCChHHHHHHHH
Q 005115 211 FTLQCMAKGGIHDHVGGGFHR---YSV------DERWH--VPHFE-KMLY-DQGQ--LANVYLDAFSLTKDVFYSYICRD 275 (714)
Q Consensus 211 ~TL~~m~~GGi~D~v~GGF~R---Ysv------D~~W~--vPHFE-KMLy-DNA~--ll~~y~~Ay~~t~d~~y~~~A~~ 275 (714)
+-+++|-.-.++|---=.+-| |.. ...|. .|.|| |.|- -||- ||.+=...|..++|..-+.=++.
T Consensus 159 rfi~afWnAHV~DW~~Ld~~RHG~Y~~~~~~vd~~~~p~lppf~~tkGLTFvNaG~DLiYaA~~l~~~~gd~~a~~Wak~ 238 (557)
T PF06917_consen 159 RFIKAFWNAHVEDWQSLDMSRHGDYGKPHDVVDPSKWPGLPPFFETKGLTFVNAGNDLIYAASMLAKYDGDEGALAWAKH 238 (557)
T ss_dssp HHHHHHHHHHEEETTTTEE-S-B-TT----SGGGS------TTEEESS---HHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhccccccCccCCCCCCcChhhccCCCcchhccCceeeecCcHHHHHHHHHHhccCchHHHHHHHH
Confidence 344566655666654433433 221 33454 46666 5553 4775 55555567889999776665555
Q ss_pred HH-HHHHHhccCCCC---cee--eeccCCCccccCcccccCCceEeechHHHHHHhhhhH-HHHHHHhc-ccCCCCcCCC
Q 005115 276 IL-DYLRRDMIGPGG---EIF--SAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA-ILFKEHYY-LKPTGNCDLS 347 (714)
Q Consensus 276 ~~-~fl~~~m~~p~G---gfy--sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~-~~~~~~~~-v~~~Gn~~~~ 347 (714)
.. .||+. ++|+- +|- +.+-.. .+.+. .+. .+.-|+.+ .-|-..|| |-.+||+-
T Consensus 239 L~~QYVla--R~PeTG~~vYQFssp~kr~-~p~dd-~~T-------------~S~~GDRAqRQFGPEfG~iA~EanvL-- 299 (557)
T PF06917_consen 239 LYRQYVLA--RHPETGLPVYQFSSPLKRE-PPADD-NDT-------------QSWYGDRAQRQFGPEFGDIAREANVL-- 299 (557)
T ss_dssp HHHHTTTT--S-TTT----S-SEEE---S---S-T-T----------------GGG--HHHHHHHHHH-TT--GGGEE--
T ss_pred HHHHhhhc--cCCCCCCceeeecCccccC-CCccc-ccc-------------ccchhhHHHhhhccccchhHhhhhhe--
Confidence 43 34443 57763 332 222211 11111 010 11223322 22333332 23344421
Q ss_pred CCCCCCCccCCc--ceecccCC--chHHHHhcCCCHHHHHH----HHHHHHHHHHhhhhcCCCCCC-CcchhhchH----
Q 005115 348 RMSDPHNEFKGK--NVLIELND--SSASASKLGMPLEKYLN----ILGECRRKLFDVRSKRPRPHL-DDKVIVSWN---- 414 (714)
Q Consensus 348 ~~~d~~~~~eg~--niL~~~~~--~~~~a~~~g~~~~~~~~----~l~~~r~~L~~~R~~R~~P~~-DdKilt~WN---- 414 (714)
|.|. .|+ ...+ .-++++.+|.+.+++.+ -|+...+.-+..-.+-.+|.+ |-+-||..-
T Consensus 300 --------Fk~d~~~i~-~dn~La~l~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~Rd 370 (557)
T PF06917_consen 300 --------FKGDPRPIV-QDNPLAQLELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRD 370 (557)
T ss_dssp ---------TTHHHHHH-THHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-
T ss_pred --------eccCCCcee-ecCHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccc
Confidence 2211 111 0111 12466777766555443 222223333334445566643 333232221
Q ss_pred ----------------HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC
Q 005115 415 ----------------GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN 478 (714)
Q Consensus 415 ----------------al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~ 478 (714)
+-.+.++++|+++.+| +...+.+..+++ ++-- |-+- ....
T Consensus 371 GYYG~KGtvl~~~p~~~~yll~~vra~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig-~~~~ 426 (557)
T PF06917_consen 371 GYYGKKGTVLKPFPADPDYLLPYVRAYRLSRD----------------PELWDLARTMAH----HFGL---GDIG-NAAG 426 (557)
T ss_dssp BTTB-TT-EE--EE--HHHHHHHHHHHHHS------------------HHHHHHHHHHHH----HTT----EE-T-TBTT
T ss_pred cccCCCCCeeccccCchhHhHHHHHHHHcCCC----------------HHHHHHHHHHHh----hcCc---cccc-Cccc
Confidence 2257899999999888 677777777764 2210 1111 0001
Q ss_pred CCC-CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 479 GPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 479 g~~-~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
..+ .....-.+-.+++.|+|+||++|++++|++.|.++.+.+.+.-+. + |||-.+
T Consensus 427 ~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~~~~~~--~-GlF~~~ 482 (557)
T PF06917_consen 427 KEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGENLFEQHFH--R-GLFVAS 482 (557)
T ss_dssp BS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHEE--T-TEE-SS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcc--C-ceecCC
Confidence 111 122344566789999999999999999999999999998887664 3 455543
No 169
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.30 E-value=0.16 Score=45.47 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=32.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
+..+||+||+... +.| +-++-.|.. +|.++.|++ +.++..++|....|.. |++ |+.|
T Consensus 22 ~~~~~Cp~C~~ak-~lL------~~~~i~~~~--~di~~~~~~----~~~l~~~tg~~tvP~v-fi~--g~~i 78 (97)
T TIGR00365 22 PQFPQCGFSARAV-QIL------KACGVPFAY--VNVLEDPEI----RQGIKEYSNWPTIPQL-YVK--GEFV 78 (97)
T ss_pred CCCCCCchHHHHH-HHH------HHcCCCEEE--EECCCCHHH----HHHHHHHhCCCCCCEE-EEC--CEEE
Confidence 5679999999844 222 222334443 455555543 2333445777788876 454 5655
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.23 E-value=0.18 Score=40.42 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEE
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVF 77 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vf 77 (714)
..+||++|+... ++|+++=|+. .+|.++.++ +.+.++.++|..+.|..++
T Consensus 5 ~~~~C~~C~~~~----------~~L~~~~i~y~~~dv~~~~~----~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 5 TKPGCPYCKKAK----------EFLDEKGIPYEEVDVDEDEE----AREELKELSGVRTVPQVFI 55 (60)
T ss_dssp ESTTSHHHHHHH----------HHHHHTTBEEEEEEGGGSHH----HHHHHHHHHSSSSSSEEEE
T ss_pred EcCCCcCHHHHH----------HHHHHcCCeeeEcccccchh----HHHHHHHHcCCCccCEEEE
Confidence 468999999955 3344332332 255555543 3334445559999999876
No 171
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.21 E-value=0.17 Score=40.99 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=34.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.+..- .+-.+-.|. .+|.++.++.. ..++.++|...+|..++ +|+.+.+
T Consensus 5 y~~~~Cp~C~~~~~~-------L~~~~i~~~--~~di~~~~~~~----~~l~~~~~~~~~P~~~~---~~~~igg 63 (72)
T cd02066 5 FSKSTCPYCKRAKRL-------LESLGIEFE--EIDILEDGELR----EELKELSGWPTVPQIFI---NGEFIGG 63 (72)
T ss_pred EECCCCHHHHHHHHH-------HHHcCCcEE--EEECCCCHHHH----HHHHHHhCCCCcCEEEE---CCEEEec
Confidence 457999999996532 222222333 45666655533 33445668888997754 5666643
No 172
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.081 Score=60.29 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=40.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCC--ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL--KPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g--~p~ 85 (714)
.||+||+.|+.++..- .++|+.+. .+=|-.|+|.... |+.. -...|+||+.|.-..+ +|+
T Consensus 391 fyAPWCgHCk~laP~~---eeLAe~~~~~~~vviAKmDaTaN-d~~~---------~~~~~fPTI~~~pag~k~~pv 454 (493)
T KOG0190|consen 391 FYAPWCGHCKALAPIY---EELAEKYKDDENVVIAKMDATAN-DVPS---------LKVDGFPTILFFPAGHKSNPV 454 (493)
T ss_pred EcCcccchhhhhhhHH---HHHHHHhcCCCCcEEEEeccccc-cCcc---------ccccccceEEEecCCCCCCCc
Confidence 6999999999998332 23444443 5678889998654 2222 0235799999887665 365
No 173
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=92.71 E-value=2.6 Score=50.19 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-
Q 005115 450 MEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF- 524 (714)
Q Consensus 450 l~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~--~-~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F- 524 (714)
.+.|++..+|+.+.... +|.+++. +.+|+.. . ...+|.|+..+.++..++..|+|..+++.--...+.+.+..
T Consensus 313 ~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~ 390 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLI 390 (616)
T ss_pred HHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 46788889999887653 5776676 4577654 2 45667799999999999999999887665444444433332
Q ss_pred --ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH---hCCCC-chHHHHHHHHHHHHHHHH
Q 005115 525 --LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI---VAGSK-SDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 525 --~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~l---t~~~~-~~~y~e~A~~~l~~~~~~ 594 (714)
+++ +. .. ++.. .++...+..+..+++...+|.+.+.+ .|+.+ ...|++.|+++-+.+...
T Consensus 391 ~~~~~--~l-~~---~~~~----lWEer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~ 456 (616)
T TIGR01577 391 LFIDP--ET-PL---PCRD----LWEEREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEER 456 (616)
T ss_pred HhccC--CC-CC---CCCc----cceecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHh
Confidence 332 11 11 1111 11222345677777766666655554 45421 245666666666655443
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.55 E-value=0.2 Score=41.90 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=33.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.+||++|++.. +.+ +-.+-.|.. +|.++.|+... .++.++|..+.|..+| +|+.|
T Consensus 6 y~~~~C~~C~ka~-~~L------~~~gi~~~~--~di~~~~~~~~----el~~~~g~~~vP~v~i---~~~~i 62 (73)
T cd03027 6 YSRLGCEDCTAVR-LFL------REKGLPYVE--INIDIFPERKA----ELEERTGSSVVPQIFF---NEKLV 62 (73)
T ss_pred EecCCChhHHHHH-HHH------HHCCCceEE--EECCCCHHHHH----HHHHHhCCCCcCEEEE---CCEEE
Confidence 4679999999954 222 223333443 45556655433 3455668888898744 34555
No 175
>PRK10638 glutaredoxin 3; Provisional
Probab=92.47 E-value=0.2 Score=43.10 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..+||+|||+.. +.++ ..+-.|..| |.++.++.... ...++|....|.. |+ +|+.+
T Consensus 8 ~~~~Cp~C~~a~-~~L~------~~gi~y~~~--dv~~~~~~~~~----l~~~~g~~~vP~i-~~--~g~~i 63 (83)
T PRK10638 8 TKATCPFCHRAK-ALLN------SKGVSFQEI--PIDGDAAKREE----MIKRSGRTTVPQI-FI--DAQHI 63 (83)
T ss_pred ECCCChhHHHHH-HHHH------HcCCCcEEE--ECCCCHHHHHH----HHHHhCCCCcCEE-EE--CCEEE
Confidence 358999999843 2222 223345444 44455443333 3456788899966 44 46666
No 176
>PHA03050 glutaredoxin; Provisional
Probab=92.32 E-value=0.26 Score=45.10 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc------ccEEEEEcCCC-CccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND------WFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~------~Fv~vkvD~ee-~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..++||+||++.. ++|++ .|..|.||..+ .++ .+..+..++|...+|.. |++ |+.|
T Consensus 18 ys~~~CPyC~~ak----------~~L~~~~i~~~~~~~i~i~~~~~~~~----~~~~l~~~tG~~tVP~I-fI~--g~~i 80 (108)
T PHA03050 18 FVKFTCPFCRNAL----------DILNKFSFKRGAYEIVDIKEFKPENE----LRDYFEQITGGRTVPRI-FFG--KTSI 80 (108)
T ss_pred EECCCChHHHHHH----------HHHHHcCCCcCCcEEEECCCCCCCHH----HHHHHHHHcCCCCcCEE-EEC--CEEE
Confidence 4679999998843 45554 45556666421 222 34445567888899988 444 5665
No 177
>PTZ00062 glutaredoxin; Provisional
Probab=92.23 E-value=0.16 Score=51.83 Aligned_cols=54 Identities=4% Similarity=-0.087 Sum_probs=39.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+|+||.-|+.|.. .+ +++++- +.++.-++||+| | ++.+.|+.+|+. +|+.+-.
T Consensus 24 f~a~w~~~C~~m~~-vl--~~l~~~-~~~~~F~~V~~d--------~--------~V~~vPtfv~~~-~g~~i~r 77 (204)
T PTZ00062 24 VKSSKEPEYEQLMD-VC--NALVED-FPSLEFYVVNLA--------D--------ANNEYGVFEFYQ-NSQLINS 77 (204)
T ss_pred EeCCCCcchHHHHH-HH--HHHHHH-CCCcEEEEEccc--------c--------CcccceEEEEEE-CCEEEee
Confidence 47999999999983 22 223322 246888889988 4 788999999997 8888744
No 178
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=92.21 E-value=0.15 Score=47.45 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=39.4
Q ss_pred CCC--CCCh---hhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-----CCccHHHHHHHHHHHhcCCC--CcCceEEeCC
Q 005115 13 RRT--HFLI---KCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMTYVQALYGGG--GWPLSVFLSP 80 (714)
Q Consensus 13 ~~t--~wC~---wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-----e~p~i~~~y~~~~q~~~g~~--g~P~~vfl~p 80 (714)
.|+ +||. -|+.++.+..+..+ .-+-.|||.+ +..++.+.| |+. |+||..|...
T Consensus 25 F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y--------~I~~~gyPTl~lF~~ 89 (116)
T cd03007 25 FDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY--------KLDKESYPVIYLFHG 89 (116)
T ss_pred EeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh--------CCCcCCCCEEEEEeC
Confidence 588 8999 88888866544222 2677889994 446788888 888 9999987774
No 179
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.12 E-value=0.28 Score=42.42 Aligned_cols=56 Identities=16% Similarity=0.016 Sum_probs=32.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc------ccEEEEEcCCCCccHHHHHHHHHHHhcCC--CCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~------~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~--~g~P~~vfl~p~g~p 84 (714)
.+.+||+||+... ++|++ ++-...+|.++.+.-.+ .+..+.|. .++|..+ + ||+.
T Consensus 6 y~~~~C~~C~~a~----------~~L~~l~~~~~~i~~~~idi~~~~~~~~----el~~~~~~~~~~vP~if-i--~g~~ 68 (85)
T PRK11200 6 FGRPGCPYCVRAK----------ELAEKLSEERDDFDYRYVDIHAEGISKA----DLEKTVGKPVETVPQIF-V--DQKH 68 (85)
T ss_pred EeCCCChhHHHHH----------HHHHhhcccccCCcEEEEECCCChHHHH----HHHHHHCCCCCcCCEEE-E--CCEE
Confidence 4679999999854 34443 45555566665442111 12233454 6789965 3 6776
Q ss_pred c
Q 005115 85 L 85 (714)
Q Consensus 85 ~ 85 (714)
+
T Consensus 69 i 69 (85)
T PRK11200 69 I 69 (85)
T ss_pred E
Confidence 6
No 180
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.10 E-value=0.22 Score=43.34 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=30.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC--CCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~--~g~P~~vfl~p~g~p~ 85 (714)
.+++||+||+.+.+- ++.-.+. +.++....+|.++... . ++....++|. .+.|..+ + +|+.+
T Consensus 5 ys~~~Cp~C~~ak~~-L~~~~~~---~~~i~~~~idi~~~~~-~---~~~l~~~~g~~~~tVP~if-i--~g~~i 68 (86)
T TIGR02183 5 FGRPGCPYCVRAKQL-AEKLAIE---RADFEFRYIDIHAEGI-S---KADLEKTVGKPVETVPQIF-V--DEKHV 68 (86)
T ss_pred EeCCCCccHHHHHHH-HHHhCcc---cCCCcEEEEECCCCHH-H---HHHHHHHhCCCCCCcCeEE-E--CCEEe
Confidence 357899999996532 2111100 0123344455543221 1 1223445565 6889884 4 45555
No 181
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.09 E-value=0.45 Score=46.50 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-c--ccEEEEEcCC-----CCccHHHHHHH--------------HHHHhcCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-D--WFVSIKVDRE-----ERPDVDKVYMT--------------YVQALYGGG 70 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~--~Fv~vkvD~e-----e~p~i~~~y~~--------------~~q~~~g~~ 70 (714)
.+++||+-|..+..+ + .++.+.+. + .||.|-+|.. +.++--+.|.+ .+....|..
T Consensus 32 f~~t~Cp~c~~~~~~-l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~ 108 (171)
T cd02969 32 FICNHCPYVKAIEDR-L--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAA 108 (171)
T ss_pred EECCCCccHHHHHHH-H--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCC
Confidence 468999999865433 2 12333332 3 4555555542 12222222221 112234778
Q ss_pred CcCceEEeCCCCccccccc
Q 005115 71 GWPLSVFLSPDLKPLMGGT 89 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~t 89 (714)
++|.+++++|+|+.++.+.
T Consensus 109 ~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 109 CTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred cCCcEEEECCCCeEEEeec
Confidence 8999999999999987643
No 182
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.08 E-value=0.23 Score=42.39 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=34.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+.+||+||+... ..+ +-.+=.|..|.||. .++... .-.++|....|..++ +|+.+.
T Consensus 13 y~~~~Cp~C~~ak-~~L------~~~gi~y~~idi~~--~~~~~~-----~~~~~g~~~vP~i~i---~g~~ig 69 (79)
T TIGR02190 13 FTKPGCPFCAKAK-ATL------KEKGYDFEEIPLGN--DARGRS-----LRAVTGATTVPQVFI---GGKLIG 69 (79)
T ss_pred EECCCCHhHHHHH-HHH------HHcCCCcEEEECCC--ChHHHH-----HHHHHCCCCcCeEEE---CCEEEc
Confidence 3679999999965 322 23455566655543 333221 123468899999864 666653
No 183
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.05 E-value=0.24 Score=46.32 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.1
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|.+++++++|+..+.
T Consensus 111 p~~~lid~~G~v~~~ 125 (140)
T cd03017 111 RSTFLIDPDGKIVKV 125 (140)
T ss_pred eeEEEECCCCEEEEE
Confidence 899999999998755
No 184
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.66 E-value=0.35 Score=40.45 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHHhcCCCCcCceEE
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVF 77 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~~g~P~~vf 77 (714)
..++|++|++.. ++|+++=|+.. +|.++.|+....+ .. .|..+.|..++
T Consensus 5 ~~~~Cp~C~~ak----------~~L~~~~i~~~~~di~~~~~~~~~~----~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 5 SKNNCVQCKMTK----------KALEEHGIAFEEINIDEQPEAIDYV----KA-QGFRQVPVIVA 54 (72)
T ss_pred eCCCCHHHHHHH----------HHHHHCCCceEEEECCCCHHHHHHH----HH-cCCcccCEEEE
Confidence 468999999955 33443333332 4555555544433 22 37788999654
No 185
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.60 E-value=0.25 Score=41.87 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.++||++|+... ..++ -.+=.|..+.|+ +.|...+ ..+..+|..++|.. |+ +|+.+
T Consensus 5 ~~~~Cp~C~~a~-~~L~------~~~i~~~~~di~--~~~~~~~----~~~~~~g~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 5 TKPYCPYCTRAK-ALLS------SKGVTFTEIRVD--GDPALRD----EMMQRSGRRTVPQI-FI--GDVHV 60 (79)
T ss_pred ecCCChhHHHHH-HHHH------HcCCCcEEEEec--CCHHHHH----HHHHHhCCCCcCEE-EE--CCEEE
Confidence 469999999955 3222 233345555444 4443322 23445788999997 44 35554
No 186
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=91.41 E-value=0.3 Score=46.14 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCC-CChhhHhhhhhhCCCHHHHHH-HhcccEEEEEcCCCCccHHHHHH--------------HHHHHhcCCC------
Q 005115 13 RRTH-FLIKCHVMEVESFEDEGVAKL-LNDWFVSIKVDREERPDVDKVYM--------------TYVQALYGGG------ 70 (714)
Q Consensus 13 ~~t~-wC~wC~~M~~e~f~~~~va~~-ln~~Fv~vkvD~ee~p~i~~~y~--------------~~~q~~~g~~------ 70 (714)
..++ ||..|+.... .=.++.+. -++++..|-|..+..+.+.+... .+.+.+ |..
T Consensus 35 f~~~~~Cp~C~~~~p---~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~ 110 (146)
T PF08534_consen 35 FWASAWCPPCRKELP---YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKAL-GVTIMEDPG 110 (146)
T ss_dssp EESTTTSHHHHHHHH---HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHT-TCEEECCTT
T ss_pred EEccCCCCcchhhhh---hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHh-CCccccccc
Confidence 3567 9999998664 11222322 33434444444444333332221 122222 444
Q ss_pred ---CcCceEEeCCCCcccccc
Q 005115 71 ---GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 ---g~P~~vfl~p~g~p~~~~ 88 (714)
++|++++++++|+..+..
T Consensus 111 ~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 111 NGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TTSSSSEEEEEETTSBEEEEE
T ss_pred cCCeecEEEEEECCCEEEEEE
Confidence 999999999999998764
No 187
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.03 E-value=2 Score=49.24 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc-CCCCCCccccccccCCCCCCCChHHHHHHH--
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVLLRVKEDHDGAEPSGNSVSVIN-- 564 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~-t~~~~~~li~r~k~~~D~a~PS~nsvaa~~-- 564 (714)
+-.--++-||+.+|-.|||+-|++.|.++.+.++..|--+ +|-=+. +...... .+.. -+|. .+.|+.+..
T Consensus 262 E~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntp-tGIp~~~vn~ksG~--~~n~---~was-gg~SILaE~gt 334 (625)
T KOG2204|consen 262 ETNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTP-TGIPKALVNNKSGD--ADNY---GWAS-GGSSILAEFGT 334 (625)
T ss_pred eeeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCC-CCCchhhhccccCc--cCCc---cccc-CcchHhhhcCc
Confidence 3334457899999999999999999999999999988554 342222 1111000 1111 1111 123455544
Q ss_pred ----HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 565 ----LVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 565 ----LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
..-|+.++|+ +.|.++..++-..+-.
T Consensus 335 lhlef~~LS~ltg~---P~~~ekv~~IRk~l~k 364 (625)
T KOG2204|consen 335 LHLEFSYLSKLTGN---PTFAEKVVKIRKVLNK 364 (625)
T ss_pred eeeehHHhhhccCC---chHHHHHHHHHHHHHh
Confidence 6778899986 8899999888777643
No 188
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.93 E-value=6.3 Score=45.38 Aligned_cols=284 Identities=18% Similarity=0.177 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhh
Q 005115 249 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 328 (714)
Q Consensus 249 DNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~ 328 (714)
.|=+.+..|.-||-+||++.|+..|.++.+=|+--+.-|.|-=++..+.-| .-+.=|.|.-.-.. +|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ks---------G~~~n~~wasgg~S-IL--- 329 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKS---------GDADNYGWASGGSS-IL--- 329 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhcccc---------CccCCcccccCcch-Hh---
Confidence 366788888899999999999999999999999988888887777766554 12455666532111 22
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 005115 329 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 408 (714)
Q Consensus 329 ~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdK 408 (714)
++.|.+. =+| .-+.+..|.+ ...++...+|+-|...-. |. .+=.+
T Consensus 330 ----------aE~gtlh--------lef------------~~LS~ltg~P--~~~ekv~~IRk~l~k~ek--P~-GLypn 374 (625)
T KOG2204|consen 330 ----------AEFGTLH--------LEF------------SYLSKLTGNP--TFAEKVVKIRKVLNKSEK--PH-GLYPN 374 (625)
T ss_pred ----------hhcCcee--------eeh------------HHhhhccCCc--hHHHHHHHHHHHHHhhcC--CC-CCCcc
Confidence 1223210 001 0112222322 233444445544433211 21 12122
Q ss_pred hhh----chHHHHHH--H--------HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eE
Q 005115 409 VIV----SWNGLVIS--S--------FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RL 472 (714)
Q Consensus 409 ilt----~WNal~I~--a--------La~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G--~l 472 (714)
-|. -|.-.+.+ | |.++.-.. |..+.++..+=.++...|.+++.....+ ..
T Consensus 375 YinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s--------------~kTd~eak~my~~am~Ai~~~li~~S~~s~lt 440 (625)
T KOG2204|consen 375 YINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQS--------------DKTDCEAKGMYEDAMIAIEKYLIFKSDGSGLT 440 (625)
T ss_pred cccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhc--------------CCcchHHHHhHHHHHHHHHhhheeccCCCCeE
Confidence 111 23322221 1 33333332 3334567777777777888877654333 33
Q ss_pred EEE-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccC--C--ccccCCCCCCcc
Q 005115 473 QHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG--G--GYFNTTGEDPSV 542 (714)
Q Consensus 473 ~~~-~~~g~~~~~~~l~DyA~li~all~LyeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~--G--gff~t~~~~~~l 542 (714)
+-+ +..|.. +--..-.|.+.-|+..|....++. .|++.+.+++..+-+-|....+ | .|+++.. ++..
T Consensus 441 yi~e~~~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~ 517 (625)
T KOG2204|consen 441 YISEWNGGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAF 517 (625)
T ss_pred EEEecCCCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchh
Confidence 333 444432 111234577778888888887774 5999999999999877643322 2 3554432 2222
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005115 543 LLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 605 (714)
Q Consensus 543 i~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~~~~~ 605 (714)
.+|..+-+ -+-- ...++.+.-|.++|++ +.||+-+-+.++++-.. .+...++..+
T Consensus 518 ~~r~~Esy--yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek~-cr~~~G~~gl 572 (625)
T KOG2204|consen 518 AVRKVESY--YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEKY-CRVAKGYSGL 572 (625)
T ss_pred hhhcccce--eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHh-cccccchhhh
Confidence 22322211 0111 2467788889999996 78999999988775433 3444455443
No 189
>PLN02171 endoglucanase
Probab=90.64 E-value=17 Score=43.36 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=62.6
Q ss_pred cCCCC---CCCCCCCChhHH--HHHH-HhhhhhcccCCCCCCHHHHHHHHHHHHHHHh-----CCCcccCCCcEEEEecC
Q 005115 167 RFGGF---GSAPKFPRPVEI--QMML-YHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGGFHRYSVD 235 (714)
Q Consensus 167 ~~GGf---g~apKFP~~~~l--~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GGF~RYsvD 235 (714)
.-||| |.--||=.|+.. ..|+ .+......-.....-+.+++.+.--||-|.. +++|-|||.| .+|
T Consensus 74 lsGGwyDAGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~~~~~~y~qVgdg----~~D 149 (629)
T PLN02171 74 LVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHPEPNVLYGEVGDG----DTD 149 (629)
T ss_pred CCCCceeCCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCeEEEEeCCC----Ccc
Confidence 45888 445677665533 3333 2221111000011235778888877777765 3344444433 122
Q ss_pred C-CCCCCCCchh---HH---------H-HHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHH
Q 005115 236 E-RWHVPHFEKM---LY---------D-QGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRR 282 (714)
Q Consensus 236 ~-~W~vPHFEKM---Ly---------D-NA~ll~~y~~Ay~~t~d--~~----y~~~A~~~~~fl~~ 282 (714)
. -|..|+-.++ +| | =+..+.+++.|+++.++ +. +++.|+++++|..+
T Consensus 150 H~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (629)
T PLN02171 150 HYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADK 216 (629)
T ss_pred ccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 2 3777753211 12 2 46788889999999874 44 57788899999876
No 190
>PLN02993 lupeol synthase
Probab=90.38 E-value=3 Score=50.48 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---Ch
Q 005115 204 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 267 (714)
Q Consensus 204 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~--~W~--vP---HFEKMLyD------NA~ll~~y~~Ay~~t~---d~ 267 (714)
+.+.-+...|-.|.. -+|||.-|-.|+ .|+ +| ||+..+.| -+..|.++...-.... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 455556666666655 369999999766 776 45 45555544 3445555543222111 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 005115 268 FYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 268 ~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
.....++++++||++ .+.++|+||.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 345688999999987 5888998873
No 191
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=90.35 E-value=28 Score=41.74 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC-CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005115 449 YMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 526 (714)
Q Consensus 449 yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~-~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D 526 (714)
+.+.|++.++||.+.... +|.+++.| -+|++... -.+|-||+.|.++..+++... ..+....+.+++++.++ +.
T Consensus 312 ~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p 387 (648)
T TIGR01535 312 DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GP 387 (648)
T ss_pred CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CC
Confidence 356788899999888764 46666654 58877544 667888999999988888544 45656677777877664 32
Q ss_pred ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHHHH
Q 005115 527 REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV---AGSK-SDYYRQNAEHSLAVFE 592 (714)
Q Consensus 527 ~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt---~~~~-~~~y~e~A~~~l~~~~ 592 (714)
...-+. +|..-+..|+..|....+|.+-+.+. |+.+ ...|++.|+++-+.+.
T Consensus 388 ~p~~d~--------------WEer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~ 443 (648)
T TIGR01535 388 KTGQER--------------WEEIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLIE 443 (648)
T ss_pred CCCCCc--------------ccccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 111111 22223455777776556666666655 3311 2346666655544443
No 192
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.34 E-value=0.64 Score=40.82 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=33.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
-..+||.||+... ++|+++=|+.. +|.++.++ .+..+..++|....|.. |++ |+.|
T Consensus 18 ~~~~~Cp~C~~ak----------~~L~~~~i~y~~idv~~~~~----~~~~l~~~~g~~tvP~v-fi~--g~~i 74 (90)
T cd03028 18 PEEPRCGFSRKVV----------QILNQLGVDFGTFDILEDEE----VRQGLKEYSNWPTFPQL-YVN--GELV 74 (90)
T ss_pred CCCCCCcHHHHHH----------HHHHHcCCCeEEEEcCCCHH----HHHHHHHHhCCCCCCEE-EEC--CEEE
Confidence 3468999999843 44444433332 34444443 34455567788889986 664 5555
No 193
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=90.29 E-value=8.6 Score=41.77 Aligned_cols=142 Identities=11% Similarity=-0.013 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC--ChHHHHHH
Q 005115 448 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 513 (714)
Q Consensus 448 ~yl~~A~~~~~~l~~~l~d------------~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTg--d~~~L~~A 513 (714)
++-+..+++.+||.++... ..+|++-.....+ .....++-++++.+|+.+.+.+. +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999987631 1123222111110 01224688999999999998873 45666777
Q ss_pred HHHHHHHHHhcccccCCccccCCCC-CCccc-----cccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005115 514 IELQNTQDELFLDREGGGYFNTTGE-DPSVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 587 (714)
Q Consensus 514 ~~L~~~~~~~F~D~~~Ggff~t~~~-~~~li-----~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~ 587 (714)
.+..+.+..... .+|+|...... ....+ .......|...++..+..+.+|..+....... ...+.+.+++.
T Consensus 120 ~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 777777776642 25666532111 10000 00111223445666677777777666543221 12455677777
Q ss_pred HHHHHHHH
Q 005115 588 LAVFETRL 595 (714)
Q Consensus 588 l~~~~~~i 595 (714)
++.+....
T Consensus 197 ~~~L~~~q 204 (348)
T cd02889 197 VKYLEREQ 204 (348)
T ss_pred HHHHHHhC
Confidence 77765543
No 194
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=90.18 E-value=49 Score=39.70 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCCcEEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 225 VGGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 225 v~GGF~RYsv-D~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~---d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
-.||+. |+. +..|.+ .-|-|..+.++..+..... ++...+..+++++||++ |++++|||.+
T Consensus 357 ~~GGW~-f~~~~~~~pd------sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 357 AKGGWC-FSDGDHGWPV------SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCccc-cccCCCCCCc------cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 468877 564 555533 3457777777766543321 22445788999999996 8999999965
No 195
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=90.13 E-value=27 Score=38.84 Aligned_cols=237 Identities=18% Similarity=0.135 Sum_probs=129.3
Q ss_pred HHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCcEEEEec---CCCCCCCC---------CchhH
Q 005115 183 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHVPH---------FEKML 247 (714)
Q Consensus 183 l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi---~D~v~GGF~RYsv---D~~W~vPH---------FEKML 247 (714)
+..+-.|...++|. .--++....+...|+.+..|.- +=+...||..... -..|..-+ --|-.
T Consensus 90 l~~l~~Y~~~t~D~---~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~v 166 (370)
T PF06202_consen 90 LIALQEYYRWTGDY---SFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAV 166 (370)
T ss_pred HHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcch
Confidence 34555566665431 1123445566778888888543 2222467875332 35675422 12444
Q ss_pred HHHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceee-eccCCCccccCcccccCCceEeechHH
Q 005115 248 YDQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADSAETEGATRKKEGAFYVWTSKE 320 (714)
Q Consensus 248 yDNA~ll~~y~~Ay~~t---~d---~~y~~~A~~~~~fl~~~m~~p~Ggfys-a~DADs~~~~~~~~~~EG~yY~Wt~~E 320 (714)
--||+...++..+..+. ++ ..|++.|+++-+=..+.+++++.|||. ++|.+... +
T Consensus 167 EIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~~-d----------------- 228 (370)
T PF06202_consen 167 EIQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDKEP-D----------------- 228 (370)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCCC-C-----------------
Confidence 44888777765544432 33 478889999988888889998877776 66654310 0
Q ss_pred HHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhc-CCCHHHHHHHHHHHHHHHHhh---
Q 005115 321 VEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKL-GMPLEKYLNILGECRRKLFDV--- 396 (714)
Q Consensus 321 i~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~-g~~~~~~~~~l~~~r~~L~~~--- 396 (714)
..|.+ |.++. ++-.. -+++++.+..++.+.+.|+..
T Consensus 229 ---------------~~irp-------------------N~~~a------~~L~~~~l~~~~a~~vl~~~~~~L~tp~Gl 268 (370)
T PF06202_consen 229 ---------------DSIRP-------------------NQLIA------LSLPPGLLDPEQAKKVLDRVEEELLTPWGL 268 (370)
T ss_pred ---------------ccccc-------------------CchhH------HhcCCccCCHHHHHHHHHHHHHHcCCCCch
Confidence 00000 11110 00001 134566666777777777653
Q ss_pred h-----hcCCCCCCCc------c------hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005115 397 R-----SKRPRPHLDD------K------VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 459 (714)
Q Consensus 397 R-----~~R~~P~~Dd------K------ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~ 459 (714)
| ..+-+|..+. . |=.-.||+.|.|+++.+.. . ++..+.+..+++-
T Consensus 269 RTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~--~----------------~~~~~~~~~ll~~ 330 (370)
T PF06202_consen 269 RTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFD--E----------------EEAIREAKSLLEG 330 (370)
T ss_pred hcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCcc--c----------------hHHHHHHHHHHHH
Confidence 2 2233442111 1 2222357778888877652 1 3456667777776
Q ss_pred HHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 005115 460 IRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLL 498 (714)
Q Consensus 460 l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all 498 (714)
+.+++....-|++-..+....+..+.-...+||.+-.+|
T Consensus 331 ~~~~~~~~~~~~lpEl~dg~~~~~p~gc~~QAWS~a~il 369 (370)
T PF06202_consen 331 FEEHLQEFGLGRLPELFDGDPPHYPRGCSPQAWSVAEIL 369 (370)
T ss_pred HHHHHhhccCCCcchhcCCCCCCCCCCCHHHHHHHHHhh
Confidence 666665433355554444333345566778888877665
No 196
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.98 E-value=0.3 Score=49.34 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=38.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
-.|++||..|+.|..- |+ ++|... ..-..||||.++- ...| +..+.|+.+|+. +|+.+..
T Consensus 108 ~Fya~wc~~C~~m~~~-l~--~LA~k~-~~vkFvkI~ad~~---~~~~--------~i~~lPTlliyk-~G~~v~~ 167 (192)
T cd02988 108 HLYKDGIPLCRLLNQH-LS--ELARKF-PDTKFVKIISTQC---IPNY--------PDKNLPTILVYR-NGDIVKQ 167 (192)
T ss_pred EEECCCCchHHHHHHH-HH--HHHHHC-CCCEEEEEEhHHh---HhhC--------CCCCCCEEEEEE-CCEEEEE
Confidence 4799999999999853 22 233322 1233456666542 2344 788999887775 8887733
No 197
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.87 E-value=0.55 Score=40.60 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEE
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 77 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vf 77 (714)
+++||++|+.+. +.++ -.+=.|.. +|.++.|+....+ +. .|....|..++
T Consensus 7 t~~~Cp~C~~ak-~~L~------~~gI~~~~--idi~~~~~~~~~~----~~-~g~~~vPvv~i 56 (81)
T PRK10329 7 TRNDCVQCHATK-RAME------SRGFDFEM--INVDRVPEAAETL----RA-QGFRQLPVVIA 56 (81)
T ss_pred eCCCCHhHHHHH-HHHH------HCCCceEE--EECCCCHHHHHHH----HH-cCCCCcCEEEE
Confidence 469999999855 3221 12223443 4555555544332 23 48889999876
No 198
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=0.35 Score=53.91 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=42.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.|++||+.|++|+.+..+- +..+. ...--.++|....+.+.+.+ +.+++|+.+|+-+..+
T Consensus 169 f~aPwc~~ck~l~~~~~~~---a~~~~~~~~v~~~~~d~~~~~~~~~~~--------~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 169 FYAPWCGHCKKLAPEWEKL---AKLLKSKENVELGKIDATVHKSLASRL--------EVRGYPTLKLFPPGEE 230 (383)
T ss_pred EeccccHHhhhcChHHHHH---HHHhccCcceEEEeeccchHHHHhhhh--------cccCCceEEEecCCCc
Confidence 4899999999997665443 33443 55556668887566666666 7899999966665554
No 199
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.80 E-value=0.3 Score=41.45 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=37.0
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 89 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~t 89 (714)
++++|+.|..|.+-. .++++.++ +.+. +|.++.+++ ..| |..+.|+.++ ||+.++.|.
T Consensus 6 ~~~~C~~C~~~~~~~---~~~~~~~~---i~~ei~~~~~~~~~-~~y--------gv~~vPalvI---ng~~~~~G~ 64 (76)
T PF13192_consen 6 FSPGCPYCPELVQLL---KEAAEELG---IEVEIIDIEDFEEI-EKY--------GVMSVPALVI---NGKVVFVGR 64 (76)
T ss_dssp ECSSCTTHHHHHHHH---HHHHHHTT---EEEEEEETTTHHHH-HHT--------T-SSSSEEEE---TTEEEEESS
T ss_pred eCCCCCCcHHHHHHH---HHHHHhcC---CeEEEEEccCHHHH-HHc--------CCCCCCEEEE---CCEEEEEec
Confidence 678899999888653 33443332 5444 333444455 556 8899999966 688877663
No 200
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=89.48 E-value=0.63 Score=38.68 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=32.2
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..+||++|+... +.+ +-.+-.|..+.|| +.++. ...+.++|...+|.. |++ |+.+
T Consensus 7 s~~~Cp~C~~ak-~~L------~~~~i~~~~~~v~--~~~~~-----~~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 7 TKPGCPFCARAK-AAL------QENGISYEEIPLG--KDITG-----RSLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred ECCCCHHHHHHH-HHH------HHcCCCcEEEECC--CChhH-----HHHHHHhCCCCcCeE-EEC--CEEE
Confidence 569999999953 322 2234455544444 44321 234456788899986 554 5555
No 201
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=89.47 E-value=0.42 Score=53.97 Aligned_cols=60 Identities=5% Similarity=-0.029 Sum_probs=37.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHH----HHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~----~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||+||+... ++|+++=|+.+ +|.++.|+....+... .+..+|..+.|.++| +|+.|
T Consensus 7 ys~~~Cp~C~~aK----------~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~i 71 (410)
T PRK12759 7 YTKTNCPFCDLAK----------SWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVHI 71 (410)
T ss_pred EeCCCCHHHHHHH----------HHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEEE
Confidence 4579999999844 56666655543 5666666554433221 223467888999866 45555
No 202
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.38 E-value=13 Score=45.33 Aligned_cols=147 Identities=20% Similarity=0.306 Sum_probs=98.8
Q ss_pred chhhchHHH--HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 005115 408 KVIVSWNGL--VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 485 (714)
Q Consensus 408 Kilt~WNal--~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~ 485 (714)
+-+-+.+|+ .+.||..-+.++++ .....-|.+....|...... ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 444455555 36688888888887 45566677766644332211 12246
Q ss_pred CcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005115 486 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 565 (714)
Q Consensus 486 ~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~L 565 (714)
+...-|=++.-|+.+|+.|.++++++.|..+.+.+.+...-.++ .+.+.... --|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gf--------shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLGF--------SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceeccc--------ccchHHHHHHH
Confidence 66777888999999999999999999999999998877543221 11122111 23566677889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005115 566 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC 607 (714)
Q Consensus 566 lrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~~~~~l~ 607 (714)
+.|+..||+ +.+.+.+++.+..=....... .+.|+.
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~~---~~~Wc~ 838 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSDK---FTRWCS 838 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 999999996 788888888887655444442 445543
No 203
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=89.32 E-value=1.1 Score=46.78 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=14.2
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|++++++++|+++..
T Consensus 201 ~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 201 NFEKFLVDKNGKVVER 216 (236)
T ss_pred CceEEEECCCCcEEEE
Confidence 4999999999999954
No 204
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.04 E-value=0.77 Score=48.37 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.9
Q ss_pred cCCCCcCceEEeCCCCcccccccccCCC
Q 005115 67 YGGGGWPLSVFLSPDLKPLMGGTYFPPE 94 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~~ty~p~~ 94 (714)
.|..|+|++||.+.+|++....+|.|++
T Consensus 215 lGv~GTPaiv~~d~~G~~~~v~G~~~~~ 242 (251)
T PRK11657 215 LGANATPAIYYMDKDGTLQQVVGLPDPA 242 (251)
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 4789999999999999975556677755
No 205
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=88.98 E-value=30 Score=35.51 Aligned_cols=128 Identities=14% Similarity=0.013 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC--CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 005115 149 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 226 (714)
Q Consensus 149 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF--P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~ 226 (714)
....+++++..|.+.. ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ....
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3456778888887655 457999887653 33332222222211111000 11233444455555442 3356
Q ss_pred CcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 005115 227 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 291 (714)
Q Consensus 227 GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggf 291 (714)
|||..+.-... ..++-+.-....+..+.++..+..... ...+.++++||.+. +.++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~-q~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSC-QNYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHH-hcCCCCc
Confidence 78775332110 012223344557778888877655443 56789999999885 4677877
No 206
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=88.88 E-value=1.8 Score=46.82 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=87.7
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 005115 415 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 491 (714)
Q Consensus 415 al~I~aLa~a~-~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA 491 (714)
+=++.+|+.++ +.+++ +++.+.++++.+++.++....+++ +... +.... ...+....-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPDN-RNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---SE-CTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCCC-CCccccccccccccCcH
Confidence 45788888888 57777 899999999999999888653334 3221 11110 0356667777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 571 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~l 571 (714)
=++.+++.+++..+++.+.+.+.++.+.+.+.-. +.. +...--|++=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7889999999999999999999998888776310 011 111223566677788999999
Q ss_pred hCCCCchHHHHHHHHHHHHHH
Q 005115 572 VAGSKSDYYRQNAEHSLAVFE 592 (714)
Q Consensus 572 t~~~~~~~y~e~A~~~l~~~~ 592 (714)
+++ +.|.+.+++++..+.
T Consensus 290 ~~~---~~~~~~~~~~~~~~~ 307 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKLL 307 (355)
T ss_dssp H-----HCCHHHHHHHHHHHC
T ss_pred cCC---HHHHHHHHHHHHHHH
Confidence 985 668888887755543
No 207
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=88.79 E-value=0.53 Score=50.44 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 252 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 252 ~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
.-+..++++|+.++++.|++.+.++++||+. |+.|+|||-
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 3456678899999999999999999999997 899999984
No 208
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=88.58 E-value=1.4 Score=42.15 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=15.1
Q ss_pred CceEEeCCCCcccccc-cccCC
Q 005115 73 PLSVFLSPDLKPLMGG-TYFPP 93 (714)
Q Consensus 73 P~~vfl~p~g~p~~~~-ty~p~ 93 (714)
|++++++++|+....- +|.|+
T Consensus 121 ~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 121 RISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred eEEEEECCCCEEEEEEcCCCcc
Confidence 7889999999987552 34444
No 209
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=88.19 E-value=1.4 Score=45.92 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCCcCceEEeCCCCcccccccccCCCCCCCCccHHHHHH
Q 005115 68 GGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILR 107 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~ 107 (714)
|..|+|++|| +||+.+ .+|.|++ .|.++|+
T Consensus 199 gi~gTPtiv~--~~G~~~--~G~~~~~------~L~~~l~ 228 (232)
T PRK10877 199 GVQGTPAIVL--SNGTLV--PGYQGPK------EMKAFLD 228 (232)
T ss_pred CCccccEEEE--cCCeEe--eCCCCHH------HHHHHHH
Confidence 8899999885 578888 4577765 4555554
No 210
>PLN02340 endoglucanase
Probab=88.18 E-value=62 Score=38.64 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=63.7
Q ss_pred cCCCC---CCCCCCCChhHHH---HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHh-----CCCcccCCCc-EEEEec
Q 005115 167 RFGGF---GSAPKFPRPVEIQ---MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGG-FHRYSV 234 (714)
Q Consensus 167 ~~GGf---g~apKFP~~~~l~---~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GG-F~RYsv 234 (714)
.-||| |.--||=.|+... +++-+......-.....-+.+++.+.--+|-|.+ +.+|-|||-| ..-
T Consensus 74 lsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH--- 150 (614)
T PLN02340 74 LVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDH--- 150 (614)
T ss_pred CCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccc---
Confidence 46888 4457887766432 3333322111111112346888888888888876 2333344322 221
Q ss_pred CCCCCCCCCchhHHH---------------HHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHH
Q 005115 235 DERWHVPHFEKMLYD---------------QGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRR 282 (714)
Q Consensus 235 D~~W~vPHFEKMLyD---------------NA~ll~~y~~Ay~~t~d--~~----y~~~A~~~~~fl~~ 282 (714)
..|..| |+|-.. =+..+.+++.|+++.++ +. +++.|+++++|..+
T Consensus 151 -~~W~~P--E~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (614)
T PLN02340 151 -YCWERA--EDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFADK 216 (614)
T ss_pred -ccCCCh--hhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 246655 444322 25678889999999874 44 57788899999877
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.98 E-value=0.45 Score=55.73 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=49.3
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccc
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 89 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~t 89 (714)
++..+++|++|....+-. .+++ ..|.+...--+|..+.|++.+.| ++.++|++|+ ||+.++.|-
T Consensus 481 ~v~~~~~C~~Cp~~~~~~---~~~~-~~~~~i~~~~i~~~~~~~~~~~~--------~v~~vP~~~i---~~~~~~~G~ 544 (555)
T TIGR03143 481 KIGVSLSCTLCPDVVLAA---QRIA-SLNPNVEAEMIDVSHFPDLKDEY--------GIMSVPAIVV---DDQQVYFGK 544 (555)
T ss_pred EEEECCCCCCcHHHHHHH---HHHH-HhCCCceEEEEECcccHHHHHhC--------CceecCEEEE---CCEEEEeeC
Confidence 456899999999866543 3343 45667777889999999999999 8889999988 677776553
No 212
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=87.93 E-value=1.3 Score=36.71 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC-CcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~-g~P~~vfl~p~g~p~ 85 (714)
..+||+||+...+ .+ +..|-.|..|.|+.+ |+..+. +....|.. ++|.. |+ +|+.+
T Consensus 6 ~~~~Cp~C~~ak~-~L------~~~~i~~~~i~i~~~--~~~~~~----~~~~~~~~~~vP~v-~i--~g~~i 62 (75)
T cd03418 6 TKPNCPYCVRAKA-LL------DKKGVDYEEIDVDGD--PALREE----MINRSGGRRTVPQI-FI--GDVHI 62 (75)
T ss_pred eCCCChHHHHHHH-HH------HHCCCcEEEEECCCC--HHHHHH----HHHHhCCCCccCEE-EE--CCEEE
Confidence 4699999999553 22 224445655555533 332221 22233554 89965 44 45666
No 213
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=87.91 E-value=34 Score=40.97 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhc------------ccccCCCCCCC--CC-CCChh----HHHHHHHhhhhhcccCCCCCCHHHHHHHHH
Q 005115 151 NALRLCAEQLSKS------------YDSRFGGFGSA--PK-FPRPV----EIQMMLYHSKKLEDTGKSGEASEGQKMVLF 211 (714)
Q Consensus 151 ~~~~~~~~~l~~~------------~D~~~GGfg~a--pK-FP~~~----~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 211 (714)
..+.++.+.|.+. -+...||||-. +. +|... .|.-|+... ..+ ......+.+-+..
T Consensus 336 p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~--~~~---~~~~~~~i~ra~~ 410 (635)
T TIGR01507 336 DALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR--LPD---ERRRRDAMTKAFR 410 (635)
T ss_pred HHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC--CCc---cccchHHHHHHHH
Confidence 3567777777665 23467998875 66 45533 333333221 000 0011234444555
Q ss_pred HHHHHHhCCCcccCCCcEEEEecCCCCC----CCCCc---hhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005115 212 TLQCMAKGGIHDHVGGGFHRYSVDERWH----VPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDY 279 (714)
Q Consensus 212 TL~~m~~GGi~D~v~GGF~RYsvD~~W~----vPHFE---KML-----yDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~f 279 (714)
-|-.|.. -+|||.-|..+.... +| |. .|+ -+-+..+.+|... +...-...++++++|
T Consensus 411 wLl~~Qn------~dGgw~af~~~~~~~~l~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~----g~~~~~~~i~rav~~ 479 (635)
T TIGR01507 411 WIAGMQS------SNGGWGAFDVDNTSDLLNHIP-FCDFGAVTDPPTADVTARVLECLGSF----GYDDAWPVIERAVEY 479 (635)
T ss_pred HHHHhcC------CCCCEecccCCcchhHHhcCC-ccccccccCCCCccHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 5555544 579997665444322 34 32 222 1257777777753 222226788999999
Q ss_pred HHHhccCCCCceee
Q 005115 280 LRRDMIGPGGEIFS 293 (714)
Q Consensus 280 l~~~m~~p~Ggfys 293 (714)
|++ ++.++||+|.
T Consensus 480 L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 480 LKR-EQEPDGSWFG 492 (635)
T ss_pred HHH-ccCCCCCCcc
Confidence 987 7899999865
No 214
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=87.33 E-value=64 Score=38.64 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 265 KDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 265 ~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
+++...+..+++++||++ |++++|||-+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~-~Qn~dGGw~a 409 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILG-MQSSNGGFAA 409 (621)
T ss_pred cccccHHHHHHHHHHHHH-HcCCCCCEee
Confidence 456667889999999997 8999999954
No 215
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=87.31 E-value=17 Score=40.58 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc-----
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 525 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~----- 525 (714)
+.|+++.....+... .|.+.+....|....-+..|---+++.++-++++.|+|..+++......+.+++.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666655555543 588888877776555566788889999999999999999999877776555555542
Q ss_pred ----cccCCccccCCC-------CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHH
Q 005115 526 ----DREGGGYFNTTG-------EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVF 591 (714)
Q Consensus 526 ----D~~~Ggff~t~~-------~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~---~~~~~~y~e~A~~~l~~~ 591 (714)
|+++| +..... -|...-.+....-+++.-.-|+.+..+|..++.+.. .....+|++.|+++-+.|
T Consensus 127 ~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F 205 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKESF 205 (370)
T ss_pred ccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 22222 222211 010000001111122333456666667766666654 212357999999988888
Q ss_pred HHHH
Q 005115 592 ETRL 595 (714)
Q Consensus 592 ~~~i 595 (714)
....
T Consensus 206 ~~~F 209 (370)
T PF06202_consen 206 EKRF 209 (370)
T ss_pred HHHH
Confidence 7765
No 216
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=87.07 E-value=21 Score=37.33 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.9
Q ss_pred cccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 222 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 222 ~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
|=+-+|||.= | -++-+=-..-.|..+..|++|.+...-+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 4466888873 4 3444667788999999999998885433 57889999999998 78899884
No 217
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=86.89 E-value=9.4 Score=42.60 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 454 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~~--G~l~~~~~---~g~~---~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
.++.+|.++|+...+. +.+.+.+. +|.. ....=.|.=-+.++||+...+.-+++.|++.|..|++.|.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4677888888876543 33444442 2322 12233344468999999999999999999999999999998766
Q ss_pred cccCC-ccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 526 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 526 D~~~G-gff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
.+..| +..-.+.+.. + .....-..-||= .+-..+-.++.++++ ..|.+.++..++.+..
T Consensus 154 ~~~~g~g~~LlPG~~g--F--~~~~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG--F--ADDGSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc--c--cCCCCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3333332110 0 000000011332 355567777888874 5688888887777654
No 218
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=86.41 E-value=1.3 Score=43.16 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc---cEEEEEcCCCCc-cHHHHHH----------------HHHHHhcCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERP-DVDKVYM----------------TYVQALYGGGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~---Fv~vkvD~ee~p-~i~~~y~----------------~~~q~~~g~~g~ 72 (714)
..+.||..|+-.- =.=.++=+.+.++ |--|-|++|..- +.+..|. +-++...++.|.
T Consensus 40 FsA~wC~pCR~FT---P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~i 116 (157)
T KOG2501|consen 40 FSAHWCPPCRDFT---PILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGI 116 (157)
T ss_pred EEEEECCchhhCC---chHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcC
Confidence 4689999998642 2223444556667 888888877542 3333322 112234578999
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|..+++.|||..+..
T Consensus 117 P~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 117 PALVILKPDGTVVTE 131 (157)
T ss_pred ceeEEecCCCCEehH
Confidence 999999999988844
No 219
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=86.03 E-value=11 Score=43.63 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 526 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D 526 (714)
.+|+...-||+||+|+-||+.-+.+.+.+...++-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 48999999999999999999999999999887754
No 220
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=1.4 Score=37.92 Aligned_cols=58 Identities=16% Similarity=0.013 Sum_probs=35.0
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..++|+||+...+- .+-.+-.|.-|.|+.++. . ..+.+++..+|+...|..++ +++.+
T Consensus 7 t~~~CPyC~~ak~~-------L~~~g~~~~~i~~~~~~~-~---~~~~~~~~~~g~~tvP~I~i---~~~~i 64 (80)
T COG0695 7 TKPGCPYCKRAKRL-------LDRKGVDYEEIDVDDDEP-E---EAREMVKRGKGQRTVPQIFI---GGKHV 64 (80)
T ss_pred ECCCCchHHHHHHH-------HHHcCCCcEEEEecCCcH-H---HHHHHHHHhCCCCCcCEEEE---CCEEE
Confidence 46889999995521 223334566666666553 1 22334556668999998765 44444
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.96 E-value=0.72 Score=53.53 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.2
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
++.+++.|++|...- ..+ .++ ...|.+-..-.+|..+.|++...| +..++|++++ +++.++.|
T Consensus 121 ~~fv~~~Cp~Cp~~v-~~~--~~~-a~~~~~i~~~~id~~~~~~~~~~~--------~v~~VP~~~i---~~~~~~~g 183 (517)
T PRK15317 121 ETYVSLSCHNCPDVV-QAL--NLM-AVLNPNITHTMIDGALFQDEVEAR--------NIMAVPTVFL---NGEEFGQG 183 (517)
T ss_pred EEEEcCCCCCcHHHH-HHH--HHH-HHhCCCceEEEEEchhCHhHHHhc--------CCcccCEEEE---CCcEEEec
Confidence 467899999998643 333 233 347887777779999999999999 7889999976 45566543
No 222
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=85.91 E-value=5 Score=44.72 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc
Q 005115 452 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 531 (714)
Q Consensus 452 ~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg 531 (714)
..+++-+||.+++.-..++ . ..+.|---=++-|||..|..+|+.-||++|.+|.+.++.-|..+ ++-
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~---VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sp-s~I 217 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------D---VNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSP-SPI 217 (546)
T ss_pred HHHHHHHHHHhhccccccc---------c---eehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCC-CCC
Confidence 3455667777766321111 1 12234445567899999999999999999999999999999444 443
Q ss_pred cccCCCCCCccccccccCCCCCCCChHHHH---HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 532 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVS---VINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 532 ff~t~~~~~~li~r~k~~~D~a~PS~nsva---a~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
-|+...-+......++-.- -|..|.. -..+--|+++||+ +.|.+.|.++.+.+...
T Consensus 218 PysdVnL~~~~A~~p~~~~----~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 218 PYSDVNLGTGTAHPPRWTG----DSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHGL 276 (546)
T ss_pred CcceeecCCCcccCCCCCC----ccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhcc
Confidence 3332211111111111111 1222221 1226678999996 78999999988876543
No 223
>PTZ00062 glutaredoxin; Provisional
Probab=85.77 E-value=1.2 Score=45.46 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=32.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
|.+.+||+||+.+. ++|+++=|+. .+|.++++++.+. +..++|...+|.. |+ +|+.|
T Consensus 122 ~~~~p~C~~C~~~k----------~~L~~~~i~y~~~DI~~d~~~~~~----l~~~sg~~TvPqV-fI--~G~~I 179 (204)
T PTZ00062 122 SKTFPFCRFSNAVV----------NMLNSSGVKYETYNIFEDPDLREE----LKVYSNWPTYPQL-YV--NGELI 179 (204)
T ss_pred CCCCCCChhHHHHH----------HHHHHcCCCEEEEEcCCCHHHHHH----HHHHhCCCCCCeE-EE--CCEEE
Confidence 45679999999843 5565533332 3566666665432 3334555555544 44 36666
No 224
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=85.76 E-value=1.6 Score=48.55 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=61.4
Q ss_pred hHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc--cHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccCCCCCCC
Q 005115 21 CHVMEVESFEDEGVAKLLNDWFVSIKVDREERP--DVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYG 98 (714)
Q Consensus 21 C~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p--~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~ 98 (714)
-.+|++-+|.|..|.+.+-..||.|||+..+-- ....+| -.--.|..+|+.-.|.|+...|-+-
T Consensus 33 s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IY--------p~v~vPs~ffIg~sGtpLevitg~v------ 98 (506)
T KOG2507|consen 33 SDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIY--------PYVSVPSIFFIGFSGTPLEVITGFV------ 98 (506)
T ss_pred hhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhc--------ccccccceeeecCCCceeEEeeccc------
Confidence 357899999999999999999999999987642 223344 4567899999999999998766333
Q ss_pred CccHHHHHHHHHHHHhh
Q 005115 99 RPGFKTILRKVKDAWDK 115 (714)
Q Consensus 99 ~~~f~~~L~~i~~~w~~ 115 (714)
+--++-.+|.+.|.-
T Consensus 99 --~adeL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 99 --TADELASSIEKVWLG 113 (506)
T ss_pred --cHHHHHHHHHHHHHH
Confidence 234677888888873
No 225
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=85.75 E-value=2.3 Score=40.77 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.0
Q ss_pred CCCcCc----eEEeCCCCccccc
Q 005115 69 GGGWPL----SVFLSPDLKPLMG 87 (714)
Q Consensus 69 ~~g~P~----~vfl~p~g~p~~~ 87 (714)
.++.|+ +++++++|+++..
T Consensus 113 ~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 113 SKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred CCCCCCCccEEEEEcCCCcEEEE
Confidence 357898 9999999999854
No 226
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=85.51 E-value=1.7 Score=45.78 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHH
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 491 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~~~~~~l~DyA 491 (714)
|.+-.+.-+..|+.-... +.=++.+.+....+. .++ |...+..|-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 446667777777765443 344555555543222 122 3344567789999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHhcccccCCcc
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGY 532 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~-~L~~~~~~~F~D~~~Ggf 532 (714)
|++.|+-++|.++| .+++.|. .+.+.+.+-..|..+||+
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~ 136 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGI 136 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcc
Confidence 99999999999999 7777776 566667777777777764
No 227
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=85.37 E-value=6.1 Score=45.66 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred cchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC------
Q 005115 407 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP------ 480 (714)
Q Consensus 407 dKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~------ 480 (714)
...+.+|....|..+-..++.+||.... .++....++.++++..+..+...+...+.+.|-.
T Consensus 199 ~~~~~~w~l~~i~~~~~~y~~tGD~~~l------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~~~ 266 (509)
T PF05592_consen 199 GFGIPDWSLAWIIIPWDYYLYTGDREFL------------EEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGNDG 266 (509)
T ss_dssp GGGBHHHHHHHHHHHHHHHHHHT-HHHH------------HHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----TT
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccCcc
Confidence 3466789999999999999999994221 4667788888888887664410111111122211
Q ss_pred -CCCCCCcch---HHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcc
Q 005115 481 -SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 532 (714)
Q Consensus 481 -~~~~~~l~D---yA~li~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggf 532 (714)
......+-. |+.++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 267 DGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp ---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 111222222 455666688888999985 6999999999999999999887744
No 228
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=84.66 E-value=80 Score=38.03 Aligned_cols=119 Identities=9% Similarity=0.027 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcccc-cCCCCCCCCCCCChhHH----------------HHHHHhhhhhcccCCCCCCHHHHHHHHHH
Q 005115 150 QNALRLCAEQLSKSYDS-RFGGFGSAPKFPRPVEI----------------QMMLYHSKKLEDTGKSGEASEGQKMVLFT 212 (714)
Q Consensus 150 ~~~~~~~~~~l~~~~D~-~~GGfg~apKFP~~~~l----------------~~Ll~~~~~~~~~~~~~~~~~~~~~~~~T 212 (714)
.++....+--|+...|. ..|++=-+|-+|.|... .+........+ . .+.+.+.....
T Consensus 250 ~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G---~---~~~a~~~~~~l 323 (648)
T TIGR01535 250 NSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAG---D---VDSALRSLDYL 323 (648)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCC---C---HHHHHHHHHHH
Confidence 45566666778888898 45999999988865422 11111111111 1 12333333333
Q ss_pred HHHHHhCCCcccCCCc-EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 005115 213 LQCMAKGGIHDHVGGG-FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 284 (714)
Q Consensus 213 L~~m~~GGi~D~v~GG-F~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m 284 (714)
++... . .|. .++|.+|..-..+ |.-|---|.+|.+....++.. ...|...++.+++||.+..
T Consensus 324 ~~~~~------~-~G~~lq~y~vdG~~~~~--~iQlD~~g~~i~~~~~l~~~~-~~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 324 AKVQQ------D-NGMFPQNSWVDGKPYWT--GIQLDETAFPILLAYRLHRYD-HAFYDKMLKPAADFIVKNG 386 (648)
T ss_pred HHHhc------c-CCCcCceeccCCCCCCC--CccccHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHcC
Confidence 33322 2 344 5679999875555 455544677777666666643 3678889999999999853
No 229
>PTZ00256 glutathione peroxidase; Provisional
Probab=84.15 E-value=2.1 Score=42.64 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.9
Q ss_pred CCCcCc---eEEeCCCCccccc
Q 005115 69 GGGWPL---SVFLSPDLKPLMG 87 (714)
Q Consensus 69 ~~g~P~---~vfl~p~g~p~~~ 87 (714)
..+.|. +++++++|+++..
T Consensus 142 ~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 142 ARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CcccCcceEEEEECCCCCEEEE
Confidence 347895 5999999999854
No 230
>PRK10137 alpha-glucosidase; Provisional
Probab=83.85 E-value=81 Score=38.72 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHH---HHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 491 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 491 A~li---~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
|++. ..|.++++..|++ +|.++|.++.+.+.+.|||++.|.||+..
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6777788888865 48889999999999999999998887654
No 231
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=83.30 E-value=57 Score=33.35 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005115 204 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 283 (714)
Q Consensus 204 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~ 283 (714)
....++.++++.+.. . -+.+|||.-+. ... +-..++-+..+.++..+.... +......+++++||.+.
T Consensus 49 ~~~~~~~~~~~~l~~--~-q~~dG~~~~~~-~~~------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 116 (300)
T cd00688 49 KADENIEKGIQRLLS--Y-QLSDGGFSGWG-GND------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL 116 (300)
T ss_pred cchHHHHHHHHHHHh--c-cCCCCCccCCC-CCC------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc
Confidence 345566666666655 2 26778886321 111 445566777888877654433 45677899999999974
Q ss_pred ccCCCCceee
Q 005115 284 MIGPGGEIFS 293 (714)
Q Consensus 284 m~~p~Ggfys 293 (714)
+.++|||..
T Consensus 117 -q~~dG~~~~ 125 (300)
T cd00688 117 -QNEDGGFRE 125 (300)
T ss_pred -cCCCCCeee
Confidence 677888754
No 232
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=83.20 E-value=1.3 Score=47.43 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=34.9
Q ss_pred hhHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 245 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 245 KMLyDNA---~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
+-.+||. .-|..++++|+.|+|+.|++.+.+.++||+. .+-|+|||-
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4455643 4577789999999999999999999999997 677899983
No 233
>PTZ00056 glutathione peroxidase; Provisional
Probab=82.59 E-value=4.3 Score=41.17 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=11.5
Q ss_pred ceEEeCCCCcccc
Q 005115 74 LSVFLSPDLKPLM 86 (714)
Q Consensus 74 ~~vfl~p~g~p~~ 86 (714)
+++|++++|+++.
T Consensus 147 ~tflID~~G~iv~ 159 (199)
T PTZ00056 147 GKFLVNKSGNVVA 159 (199)
T ss_pred EEEEECCCCcEEE
Confidence 6899999999984
No 234
>PLN03012 Camelliol C synthase
Probab=82.05 E-value=1.1e+02 Score=37.51 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=37.2
Q ss_pred CCcEEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 226 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 226 ~GGF~RYsv-D~~W~vPHFEKMLyDNA~ll~~y~~Ay----~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
-||+. +|+ |..|.+.. |-|..+.+.+-.. ...+++...+...++++||+. |++++|||.+
T Consensus 470 ~GgW~-Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 470 KGAWT-FSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred CCccc-ccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 36666 453 66665553 3444443311111 122355667899999999997 9999999955
No 235
>PRK10824 glutaredoxin-4; Provisional
Probab=81.56 E-value=2.1 Score=39.72 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=30.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
|...+||+||+... . +-+-++-.|-.|.|+ +.+++.. ++...+|..-+|-. |+ +|+-|
T Consensus 24 ~~~~p~Cpyc~~ak-~------lL~~~~i~~~~idi~--~d~~~~~----~l~~~sg~~TVPQI-FI--~G~~I 81 (115)
T PRK10824 24 SPKLPSCGFSAQAV-Q------ALSACGERFAYVDIL--QNPDIRA----ELPKYANWPTFPQL-WV--DGELV 81 (115)
T ss_pred CCCCCCCchHHHHH-H------HHHHcCCCceEEEec--CCHHHHH----HHHHHhCCCCCCeE-EE--CCEEE
Confidence 45678999999854 2 222234456555454 4454333 33444554445543 33 34444
No 236
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=80.80 E-value=11 Score=45.13 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCC---------CC-C----------------ChhHHHHHHHhhhhhcccCCCCCC
Q 005115 149 PQNALRLCAEQLSKSYDSRFGGFGSAP---------KF-P----------------RPVEIQMMLYHSKKLEDTGKSGEA 202 (714)
Q Consensus 149 ~~~~~~~~~~~l~~~~D~~~GGfg~ap---------KF-P----------------~~~~l~~Ll~~~~~~~~~~~~~~~ 202 (714)
..+.+.+++..|.+.-+ ..|||+.-. ++ | ....+..|.....+ .
T Consensus 386 ~~~~l~~a~~~Ll~~Qn-~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r---------~ 455 (621)
T TIGR01787 386 KRDRLRDAVNWILGMQS-SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR---------A 455 (621)
T ss_pred cHHHHHHHHHHHHHHcC-CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc---------c
Confidence 44667778888877666 459998421 11 2 12335555433211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
+...+.+.+.++-+.. . -+-+|+|+ ..|.+.+ .|..+..+.++..+-+...+. ..++++++||++
T Consensus 456 ~~~~~~i~rAl~~L~~--~-Q~~DGsw~-----g~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~ 520 (621)
T TIGR01787 456 DEIRNVLERALEYLRR--E-QRADGSWF-----GRWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLS 520 (621)
T ss_pred HhHHHHHHHHHHHHHH--h-cCCCCCCc-----ccCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHh
Confidence 2234556666665554 2 23457775 3677653 577777888887764433322 778999999998
Q ss_pred hccCCCCcee
Q 005115 283 DMIGPGGEIF 292 (714)
Q Consensus 283 ~m~~p~Ggfy 292 (714)
. ++++|||.
T Consensus 521 ~-Q~~DGGWg 529 (621)
T TIGR01787 521 R-QMPDGGWG 529 (621)
T ss_pred h-cCCCCCCC
Confidence 4 77899984
No 237
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=79.80 E-value=90 Score=33.32 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005115 453 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 453 A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~D--yA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
-.++.+||.+.... +|++ .|++ +...| |.|.+.|.+ +.+ +...|.+ ...+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf-----~gr~---~k~~D~~ysf~~~a~l--~~l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSL--KII-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCc-----CCCC---CCCCchhHhhHHHHHH--HHh-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888776643 4666 2333 11233 344444444 333 4445665 788888888765 44568
Q ss_pred ccccCC
Q 005115 531 GYFNTT 536 (714)
Q Consensus 531 gff~t~ 536 (714)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 876544
No 238
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=79.79 E-value=41 Score=39.80 Aligned_cols=112 Identities=10% Similarity=0.018 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----EecCC---
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNG--- 479 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~-----l~d~~~G~l~~----~~~~g--- 479 (714)
+-.-+.|.++.+.++.++|.... .++...+.++.+...+- -.| .+|.++. +|.|.
T Consensus 348 DAtLWfi~al~~Y~~~tgD~~~l------------~~l~p~l~~ii~~y~~G~~~~i~~d-~dGLi~~g~~lTWMDa~~g 414 (575)
T TIGR01561 348 DASLWAIHAIDKTFAYSQDFLFI------------RDVVDKVLDIIDNYCAGNDFAIGMD-NDLIFHKGAPLTWMDAKVD 414 (575)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHhcCCCcEEEEC-CCccEeCCCCCCCCCCCCC
Confidence 33456888999999998882110 23334444444432221 012 2343332 24443
Q ss_pred ----CCCCCCCcchHHHHHHHHHH---HHHHcCC--hHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 480 ----PSKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 480 ----~~~~~~~l~DyA~li~all~---LyeaTgd--~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
.|...+..|-+|....||.. +.+..|+ ..|.++|.++.+.+.+.||+++.|.+|+.-
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v 480 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDLI 480 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 12223577888877777655 5665665 469999999999999999998766666643
No 239
>PLN03012 Camelliol C synthase
Probab=79.52 E-value=10 Score=45.97 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 517 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~~---~g~----~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~ 517 (714)
...+++.+||+++... +|++..++. +.. .....++.--||++.||+...+...|+.-+++|.+++
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4677889999988654 466655432 211 0123566777999999998876666666777777554
No 240
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=79.38 E-value=6.6 Score=38.47 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=15.0
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|++++++++|+..+..
T Consensus 119 ~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 119 ALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred eeeEEEEECCCCeEEEEE
Confidence 578999999999988654
No 241
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=81 Score=33.54 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc
Q 005115 455 SAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 534 (714)
Q Consensus 455 ~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~ 534 (714)
.+.-||-++... .|+| +|+| --+.|-.+--+.|..|- +-|...|.++. +|.+++..- -|.++|||-+
T Consensus 214 ~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfsD 280 (329)
T KOG0366|consen 214 LLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFSD 280 (329)
T ss_pred HHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcCC
Confidence 445566655543 4666 5655 33556555555555553 34777888775 577777654 4878999988
Q ss_pred CCCC
Q 005115 535 TTGE 538 (714)
Q Consensus 535 t~~~ 538 (714)
.+.+
T Consensus 281 Rpgd 284 (329)
T KOG0366|consen 281 RPGD 284 (329)
T ss_pred CCCC
Confidence 7654
No 242
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=79.09 E-value=31 Score=41.32 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 485 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~---------~~~~ 485 (714)
++++.||++++.. + +++-..-+++.+||.++-.....|.....+++..+ ..-.
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 7888899886431 1 34556778899999887653222221111121111 1123
Q ss_pred CcchHHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHHHHhcccccCCccc-cCCCCCCccc--ccc-----ccCCC
Q 005115 486 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVL--LRV-----KEDHD 551 (714)
Q Consensus 486 ~l~DyA~li~all~LyeaTg------d~~~L~~A~~L~~~~~~~F~D~~~Ggff-~t~~~~~~li--~r~-----k~~~D 551 (714)
..||-|..+.||+.+..... ....+.+|.+....+. .+ +|||. +....+...+ +.. .-..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Q----n~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQ----NE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhc----CC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 46889999999998865322 1245555555444442 33 45554 2211111100 000 01225
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 552 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 552 ~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
...+..++.++.+|..+.........++..+..++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 5667777777777766654332110123344555666665544
No 243
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=78.15 E-value=3.9 Score=34.98 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=32.6
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCcCceE
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSV 76 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~e-e~p~i~~~y~~~~q~~~g~~g~P~~v 76 (714)
+++||+.|+.+ .|.+.++..+ ....+.+|.. ..+++...|.. ....+|..+
T Consensus 40 ~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~ 94 (127)
T COG0526 40 WAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLL 94 (127)
T ss_pred EcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEE
Confidence 48999999998 4545554443 3456666665 56677777732 144567775
No 244
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=78.14 E-value=4.2 Score=40.66 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=23.2
Q ss_pred CcCceEEeCCCCcccccccc-cCCCCCCCCccHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty-~p~~~~~~~~~f~~~L~~i 109 (714)
+.|.++|++++|++.+.... .++. ..+.++|+.|
T Consensus 118 ~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l 152 (187)
T TIGR03137 118 ADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKI 152 (187)
T ss_pred eeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHH
Confidence 35999999999999876432 2221 2577777766
No 245
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=78.06 E-value=92 Score=33.68 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=57.9
Q ss_pred HhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 005115 394 FDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 473 (714)
Q Consensus 394 ~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~ 473 (714)
......+...-+|+.. ..--|.-|+++++..++ +.|.+++.++++||+...+. +|++-
T Consensus 30 ~~~~~~~~~~TiDN~a----T~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGWP 87 (290)
T TIGR02474 30 KNGGGGNESGTIDNGA----TVTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGWP 87 (290)
T ss_pred ccccCCCCcccccCcc----HHHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCcC
Confidence 3333335667778772 12346688999998887 89999999999999988875 56665
Q ss_pred EEecCCCC-CCCCCcchHH--HHHHHHHHHHHHcC
Q 005115 474 HSFRNGPS-KAPGFLDDYA--FLISGLLDLYEFGS 505 (714)
Q Consensus 474 ~~~~~g~~-~~~~~l~DyA--~li~all~LyeaTg 505 (714)
..+..... ...-+.+|.+ .++..|.++++..+
T Consensus 88 Qf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~ 122 (290)
T TIGR02474 88 QFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKD 122 (290)
T ss_pred cccCCcCCcccccccCcHHHHHHHHHHHHHHhccC
Confidence 54432111 1122334543 56777777776433
No 246
>PLN02412 probable glutathione peroxidase
Probab=77.28 E-value=2.9 Score=40.96 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=15.1
Q ss_pred CCcCceEEeCCCCccccc
Q 005115 70 GGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 70 ~g~P~~vfl~p~g~p~~~ 87 (714)
.+.|++++++++|+++..
T Consensus 129 ~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 129 KWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred CCCCeeEEECCCCcEEEE
Confidence 446999999999999854
No 247
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=76.64 E-value=5.3 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=22.9
Q ss_pred ceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 74 LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 74 ~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
.+++++++|+..+...+.+. ...|.+.++|+.|.
T Consensus 133 ~tfvId~~G~I~~~~~~~~~---~~~~~~~~~l~~l~ 166 (167)
T PRK00522 133 AVFVLDENNKVVYSELVPEI---TNEPDYDAALAALK 166 (167)
T ss_pred EEEEECCCCeEEEEEECCCc---CCCCCHHHHHHHhh
Confidence 99999999999876432111 12357888877653
No 248
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.05 E-value=3 Score=48.47 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=45.9
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
++.+++-|+||...- ..+ .-....|.+-..-.+|..+.|++...| +..++|++++ +++.++.|
T Consensus 122 ~~f~~~~Cp~Cp~~v-~~~---~~~a~~~p~i~~~~id~~~~~~~~~~~--------~v~~VP~~~i---~~~~~~~g 184 (515)
T TIGR03140 122 ETYVSLTCQNCPDVV-QAL---NQMALLNPNISHTMIDGALFQDEVEAL--------GIQGVPAVFL---NGEEFHNG 184 (515)
T ss_pred EEEEeCCCCCCHHHH-HHH---HHHHHhCCCceEEEEEchhCHHHHHhc--------CCcccCEEEE---CCcEEEec
Confidence 467899999998633 333 223456776666668899999999999 7789999976 45566544
No 249
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=74.69 E-value=39 Score=35.78 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC-CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 005115 149 PQNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 227 (714)
Q Consensus 149 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF-P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~G 227 (714)
+....+++++.+.+..+...|||+..|-- |......+.+......++. ...... ++-+..-+... -+-.|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~-~~~~~~~l~~~------q~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRID-REKIYKFLSSL------QNPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhh-HHHHHHHHHHh------cCCCC
Confidence 44567888888888873456999987532 2222111222211111110 000111 12222222222 23458
Q ss_pred cEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 228 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 228 GF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
||. ++. |...|.-=.-+ .+.+..+.+... ....+++++||.+ ++.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~ty~--------al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFVYC--------ALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHHHH--------HHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 553 44443322211 122222223322 4567889999997 6889999843
No 250
>PF13728 TraF: F plasmid transfer operon protein
Probab=74.61 E-value=5.3 Score=41.14 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=37.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCC-----------ccHHHHHHHHHHHhcCCCCcCceEEeC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREER-----------PDVDKVYMTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~-----------p~i~~~y~~~~q~~~g~~g~P~~vfl~ 79 (714)
-.|.+.|.+||.|..- |..+-+++ |-.+-|+.|.+ +++.+.+ |..-+|++++++
T Consensus 126 ~F~~~~C~~C~~~~pi------l~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l--------~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 126 FFYRSDCPYCQQQAPI------LQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL--------GVKVTPALFLVN 191 (215)
T ss_pred EEEcCCCchhHHHHHH------HHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc--------CCCcCCEEEEEE
Confidence 3578899999999843 44444433 33333555433 2223333 778899999999
Q ss_pred CCCccc
Q 005115 80 PDLKPL 85 (714)
Q Consensus 80 p~g~p~ 85 (714)
|++.-+
T Consensus 192 ~~~~~~ 197 (215)
T PF13728_consen 192 PNTKKW 197 (215)
T ss_pred CCCCeE
Confidence 998433
No 251
>PRK13190 putative peroxiredoxin; Provisional
Probab=74.19 E-value=5.7 Score=40.32 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=25.5
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
+.|.++|++|+|+..+...|-.+. | ..+-++|+.|..
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~---g-r~~~ellr~l~~ 152 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAET---G-RNIDEIIRITKA 152 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHHH
Confidence 589999999999988665443332 2 367777765543
No 252
>PRK13599 putative peroxiredoxin; Provisional
Probab=73.17 E-value=5.5 Score=40.96 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
+.|.+++++|+|+..+... .|.. .| ..+.++|+.|..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~-~p~~--~g-r~~~eilr~l~~ 154 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY-YPQE--VG-RNVDEILRALKA 154 (215)
T ss_pred eeeEEEEECCCCEEEEEEE-cCCC--CC-CCHHHHHHHHHH
Confidence 5799999999999887643 3422 22 378888887654
No 253
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=72.23 E-value=7.6 Score=36.15 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=11.2
Q ss_pred CCCCCChh-hHhhhhh
Q 005115 13 RRTHFLIK-CHVMEVE 27 (714)
Q Consensus 13 ~~t~wC~w-C~~M~~e 27 (714)
.+++||.. |...-.+
T Consensus 29 f~~~~C~~~C~~~l~~ 44 (142)
T cd02968 29 FGYTHCPDVCPTTLAN 44 (142)
T ss_pred EEcCCCcccCHHHHHH
Confidence 57899997 9865544
No 254
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=71.26 E-value=4.4 Score=38.85 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=12.2
Q ss_pred ceEEeCCCCccccc
Q 005115 74 LSVFLSPDLKPLMG 87 (714)
Q Consensus 74 ~~vfl~p~g~p~~~ 87 (714)
+++|++++|+++..
T Consensus 125 ttflId~~G~i~~~ 138 (152)
T cd00340 125 TKFLVDRDGEVVKR 138 (152)
T ss_pred EEEEECCCCcEEEE
Confidence 79999999999854
No 255
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=71.01 E-value=7.3 Score=36.63 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=12.3
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+..+.
T Consensus 115 ~~~~lid~~G~v~~~ 129 (149)
T cd03018 115 RAVFVIDRDGIIRYA 129 (149)
T ss_pred ceEEEECCCCEEEEE
Confidence 488999999998755
No 256
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=70.33 E-value=1e+02 Score=35.57 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=92.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhc--CCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 005115 372 ASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 449 (714)
Q Consensus 372 a~~~g~~~~~~~~~l~~~r~~L~~~R~~--R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~y 449 (714)
+..+.-+.+.+.++.+.++..++..-.. --=|.+|++ ..|.|=+.....-++-.+++ ..
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~~- 169 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------AA- 169 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------HH-
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------HH-
Confidence 3345566778888888888777653321 223777666 34666543333333334444 22
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005115 450 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 528 (714)
Q Consensus 450 l~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA-~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~ 528 (714)
..++..+.+.+.... +|.+....-... ......-+|+ +.+..+.++|..|||.++++..-...+..++.+....
T Consensus 170 --l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~ 244 (509)
T PF05592_consen 170 --LYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRV 244 (509)
T ss_dssp --HHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB
T ss_pred --HHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444332 465543211100 1123334553 6788999999999999988777666666555543222
Q ss_pred CCc------cccCCCCCCccccccccCCCCCCC---ChHHHHHH---HHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHH
Q 005115 529 GGG------YFNTTGEDPSVLLRVKEDHDGAEP---SGNSVSVI---NLVRLASIVAGS-KSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 529 ~Gg------ff~t~~~~~~li~r~k~~~D~a~P---S~nsvaa~---~LlrL~~lt~~~-~~~~y~e~A~~~l~~~~~~i 595 (714)
..+ +...++..+. ...+...+ ..|+..+. .+..|+.++|+. +...|+++|+++-+++...+
T Consensus 245 ~~~~~~~~~~~~~DW~~~~------~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~ 318 (509)
T PF05592_consen 245 DDGLDGLPGWGFGDWLAPG------NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHF 318 (509)
T ss_dssp -TSSB-CCSB--S-SS----------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccCCCCCceeecCCcc------CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 0001110000 01111111 14554444 466677777752 12468888888888776654
Q ss_pred H
Q 005115 596 K 596 (714)
Q Consensus 596 ~ 596 (714)
-
T Consensus 319 ~ 319 (509)
T PF05592_consen 319 W 319 (509)
T ss_dssp E
T ss_pred c
Confidence 3
No 257
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=70.02 E-value=17 Score=36.58 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=24.2
Q ss_pred CCc--CceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 70 GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 70 ~g~--P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
.|+ |.+++++|+|++.+..-+-.+. + ++..++|+.|
T Consensus 115 ~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l 152 (187)
T PRK10382 115 EGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKI 152 (187)
T ss_pred CCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHH
Confidence 467 9999999999998764332221 1 3677777655
No 258
>PLN02308 endoglucanase
Probab=68.50 E-value=2.4e+02 Score=32.92 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=65.3
Q ss_pred cCCCC---CCCCCCCChhHHH--HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecC------
Q 005115 167 RFGGF---GSAPKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD------ 235 (714)
Q Consensus 167 ~~GGf---g~apKFP~~~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD------ 235 (714)
..||| |.--||-.|+.+. +|........+. ...+.+.+++.+.--++-|.+ .++. .|+||. .|.
T Consensus 72 lsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~-~~~e~~~~ldeikw~~D~llk--m~~~-~~~vy~-qVg~~~~dh 146 (492)
T PLN02308 72 LTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRT-MGPELENAVKAVKWATDYLMK--ATAI-PNVVYV-QVGDAYSDH 146 (492)
T ss_pred CCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhh-hcchhHHHHHHHHHHHHHHHH--hcCC-CCeEEE-EecCCCCCc
Confidence 56888 4456887766443 222211111111 011235778888888888876 4443 355653 442
Q ss_pred CCCCCCCCchh---HH----------HHHHHHHHHHHHHHccC--ChHH----HHHHHHHHHHHHH
Q 005115 236 ERWHVPHFEKM---LY----------DQGQLANVYLDAFSLTK--DVFY----SYICRDILDYLRR 282 (714)
Q Consensus 236 ~~W~vPHFEKM---Ly----------DNA~ll~~y~~Ay~~t~--d~~y----~~~A~~~~~fl~~ 282 (714)
..|..|+-.++ +| -=+..+.+++.|+++.+ |+.| ++.|++.++|..+
T Consensus 147 ~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 147 NCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred cCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34666654211 11 13577889999999987 5554 6788888999887
No 259
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=67.94 E-value=12 Score=37.91 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|.+++++|+|+..+...| |.. .| ..+-++|+.|..
T Consensus 117 ~r~~fiID~~G~I~~~~~~-~~~--~g-r~~~ell~~l~~ 152 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYY-PAT--TG-RNFDEILRVVDA 152 (203)
T ss_pred eeEEEEECCCCeEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 4569999999998765443 211 12 257777765543
No 260
>PRK13270 treF trehalase; Provisional
Probab=67.10 E-value=2e+02 Score=34.07 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=78.9
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC
Q 005115 409 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP 484 (714)
Q Consensus 409 ilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~ 484 (714)
+.++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++.. .+.++
T Consensus 347 ipVDLNaiL~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~---- 410 (549)
T PRK13270 347 IPIDLNAFLYKLESAIANISALKGEKET------------EALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ---- 410 (549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc----
Confidence 34467888776 57777778876211 146888999999999999999887766543 22322
Q ss_pred CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCC--CCCChHHHHH
Q 005115 485 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSV 562 (714)
Q Consensus 485 ~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~--a~PS~nsvaa 562 (714)
. + .+.+.+++=|+-=..++ +.|..+.+.+..+|.. .||.-.+... ....-|+ +=|-.+-+++
T Consensus 411 --~-~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~~-------sgqQWD~PN~WaPlqwmii 474 (549)
T PRK13270 411 --L-A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEYE-------TGEQWDKPNGWAPLQWMAI 474 (549)
T ss_pred --c-c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCCC-------CcccCCCCCCCccHHHHHH
Confidence 1 2 24667777777533333 4577777777666653 3444333211 1122233 2456677788
Q ss_pred HHHHHHH
Q 005115 563 INLVRLA 569 (714)
Q Consensus 563 ~~LlrL~ 569 (714)
..|.+.+
T Consensus 475 eGL~ryG 481 (549)
T PRK13270 475 QGFKMYG 481 (549)
T ss_pred HHHHHcC
Confidence 8877654
No 261
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=66.61 E-value=2.7 Score=38.04 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=8.1
Q ss_pred CCCChhhHhhh
Q 005115 15 THFLIKCHVME 25 (714)
Q Consensus 15 t~wC~wC~~M~ 25 (714)
+.||+.|..--
T Consensus 35 ~~~c~~c~~~l 45 (124)
T PF00578_consen 35 TAWCPFCQAEL 45 (124)
T ss_dssp TTTSHHHHHHH
T ss_pred ccCccccccch
Confidence 44999998543
No 262
>PRK15000 peroxidase; Provisional
Probab=66.51 E-value=11 Score=38.16 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=25.0
Q ss_pred CcCceEEeCCCCcccccccc-cCCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty-~p~~~~~~~~~f~~~L~~i~ 110 (714)
+.|.++|++|+|+..+...+ .|. | ..+.++|+.|.
T Consensus 124 ~~r~tfiID~~G~I~~~~~~~~~~----g-r~~~eilr~l~ 159 (200)
T PRK15000 124 ALRGSFLIDANGIVRHQVVNDLPL----G-RNIDEMLRMVD 159 (200)
T ss_pred EEeEEEEECCCCEEEEEEecCCCC----C-CCHHHHHHHHH
Confidence 68999999999998875433 332 2 26888887663
No 263
>PRK13271 treA trehalase; Provisional
Probab=66.40 E-value=1.2e+02 Score=35.81 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=78.1
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 005115 409 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 484 (714)
Q Consensus 409 ilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~ 484 (714)
|-++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++... ++++
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~~------------A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~---- 400 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNAM------------ANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK---- 400 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChhh------------HHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC----
Confidence 44678899877 46777777776211 1468899999999999999998777665432 2222
Q ss_pred CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCC--CCChHHHHH
Q 005115 485 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSV 562 (714)
Q Consensus 485 ~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a--~PS~nsvaa 562 (714)
.-+ .+.+.+++=|+-=.-+ .+.|.++.+.+..+|..+ ||.-.+..+. .+. =|+. =|-.+-+++
T Consensus 401 --~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpTt~~~S----gqQ---WD~PngWaPlq~iii 465 (569)
T PRK13271 401 --VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNTTSVKS----GQQ---WDAPNGWAPLQWVAT 465 (569)
T ss_pred --Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccCCCCCC----CCC---CcCcccCHhHHHHHH
Confidence 122 2456677777632223 357777887777777653 5554443211 112 2332 244555677
Q ss_pred HHHHHHH
Q 005115 563 INLVRLA 569 (714)
Q Consensus 563 ~~LlrL~ 569 (714)
..|.+.+
T Consensus 466 eGL~~yG 472 (569)
T PRK13271 466 EGLQNYG 472 (569)
T ss_pred HHHHHcC
Confidence 7766554
No 264
>PLN02345 endoglucanase
Probab=66.40 E-value=2.1e+02 Score=33.15 Aligned_cols=118 Identities=10% Similarity=-0.027 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--CCcch-------------------HHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFLDD-------------------YAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~--~~l~D-------------------yA~li~all~LyeaTg 505 (714)
+++|+.++-..+|+++... .+|.+++...++..... +.+|| -+-++.+|...+.+-.
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7899999999999997653 35778876544321110 11122 2345555555555544
Q ss_pred --Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 005115 506 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 577 (714)
Q Consensus 506 --d~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS--~nsvaa~~LlrL~~lt~~~~~ 577 (714)
|+ ++|+.|+++++.+..+ .|.|..... +. .+..+| -+-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~-~~----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIP-EV----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCC-cc----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 33 5688999988888764 122221110 00 001111 112578888889999996
Q ss_pred hHHHHHHH
Q 005115 578 DYYRQNAE 585 (714)
Q Consensus 578 ~~y~e~A~ 585 (714)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 67888773
No 265
>PLN02266 endoglucanase
Probab=65.91 E-value=2.5e+02 Score=32.90 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--C-------------------CcchHHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--G-------------------FLDDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~--~-------------------~l~DyA~li~all~LyeaTg 505 (714)
+++|+.++-..+|+++.... +|.++|...++..... + -.+--+.++.+|...+.+-.
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999976643 5778886544321100 0 11122334555555555544
Q ss_pred --Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005115 506 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 579 (714)
Q Consensus 506 --d~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~ 579 (714)
|+ +.|+.|+++++....+ .|.|....... ...+....-+-.-.++++-..|+..||+ ..
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~y~s~s~~~DEl~WAAawLy~ATGd---~~ 272 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPFYCSYSGYQDELLWGAAWLHKATKN---PT 272 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCCcccCCcchHHHHHHHHHHHHHhCC---HH
Confidence 44 4688888888887643 22221110000 0000000000123566777889999996 77
Q ss_pred HHHHHHHHH
Q 005115 580 YRQNAEHSL 588 (714)
Q Consensus 580 y~e~A~~~l 588 (714)
|.+.+....
T Consensus 273 Yl~~~~~~~ 281 (510)
T PLN02266 273 YLNYIQVNG 281 (510)
T ss_pred HHHHHHHHH
Confidence 888876543
No 266
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=64.59 E-value=75 Score=39.23 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=44.8
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 475 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~ 475 (714)
=+|+|-+++...|++.+..++.+.+ ..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 559 Dl~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 559 DLTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 4789999999999999999986311 135779999999999999999988866554
No 267
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=64.36 E-value=21 Score=39.30 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---CCCCcchHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLDDYA 491 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~---~~~~l~DyA 491 (714)
-.+++||..|++..+++ ...|+..|+.+..-++.+... .|+..- .-|... .....-+-+
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~l--lpG~~~f~~~~~~~~npS 177 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVL--LPGDWGFNSDDYWTTNPS 177 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEE--CSSSSSCBTTSEEEEEGG
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEE--eccccccCCCCceEeChh
Confidence 47889999999999852 158999999999998888776 342221 222211 111111223
Q ss_pred HHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005115 492 FLI-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 492 ~li-~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
+.+ -++-.++++++++.|.+.+....+.+.+.. .+.+|
T Consensus 178 Y~~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 178 YFMPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp GS-HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred hccHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 333 777789999999999999998888877665 33444
No 268
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=64.28 E-value=26 Score=37.74 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CC
Q 005115 402 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP 480 (714)
Q Consensus 402 ~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~ 480 (714)
..-+|+.. ...-|.-|+++++.+++ ++|.+++.+..+||++..+. +|++-..|-. +.
T Consensus 33 ~~TiDN~a----T~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDNDA----TTTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGGT----THHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccChh----HHHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 44566662 23457789999999988 89999999999999999886 6888776532 11
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHhcc
Q 005115 481 SKAPGFLDDYA--FLISGLLDLYEFGSGT---------KWLVWAIELQNTQDELFL 525 (714)
Q Consensus 481 ~~~~~~l~DyA--~li~all~LyeaTgd~---------~~L~~A~~L~~~~~~~F~ 525 (714)
-...-+.+|-| -++.-|.+.++..++- ++.+...+-.+.++..-+
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi 146 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQI 146 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11122344544 4566677777777765 444444455555554443
No 269
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=63.91 E-value=1.9e+02 Score=30.16 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005115 244 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 279 (714)
Q Consensus 244 EKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~f 279 (714)
-+-+-.-|..+...+.+|.+|||+.|.+.|.++++-
T Consensus 52 ~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~~ 87 (272)
T PF05426_consen 52 YSRLQRDADAAYALALAYYLTGDEKYADKAAEILNA 87 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556677889999999999999998888777653
No 270
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=63.64 E-value=82 Score=34.49 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=65.2
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEE----ecCCCCC
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHS----FRNGPSK 482 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~--G~l~~~----~~~g~~~ 482 (714)
.-|+--|-+|.-++..++.+|+ +-|-+.|+++.+|+++.-.+..+ |..... |..-.+.
T Consensus 182 tctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsg 245 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSG 245 (587)
T ss_pred chhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccC
Confidence 3466668889999999999998 67889999999999876544222 322221 2112233
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 483 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 483 ~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
+.+-.+.| -+=+|..|-..||+.||++-.+-.+.+.+.
T Consensus 246 igagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 246 IGAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred cCcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 44444555 344667788889999999988877777544
No 271
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=62.99 E-value=25 Score=37.49 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005115 204 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 283 (714)
Q Consensus 204 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~ 283 (714)
++.+.+...+.++.. |-+-+|||.- |...+-+--.+..|..+.++.+|.... +....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH-
Confidence 344445544444443 5567899853 311112446677999999999987432 3345789999999997
Q ss_pred ccCCCCcee
Q 005115 284 MIGPGGEIF 292 (714)
Q Consensus 284 m~~p~Ggfy 292 (714)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 588999995
No 272
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.90 E-value=3.3 Score=42.59 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=46.2
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEe
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 78 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl 78 (714)
+..++.||.-|+-|+ ++|. .++++. ++...+|++.++.|+|...+ -..+.|+.++.
T Consensus 22 ~~f~a~wa~~~~q~~-~v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~--------~v~~vp~~~~~ 77 (227)
T KOG0911|consen 22 LHFWAIWAVVQKQMD-QVFD--HLAEYF-KNAQFLKLEAEEFPEISNLI--------AVEAVPYFVFF 77 (227)
T ss_pred hhhhhhhhhhhhhHH-HHHH--HHHHhh-hhheeeeehhhhhhHHHHHH--------HHhcCceeeee
Confidence 346899999999998 5554 456666 88999999999999999988 34678999887
No 273
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=62.90 E-value=2.7e+02 Score=31.63 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=154.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCc-----cccCccccc
Q 005115 235 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA-----ETEGATRKK 309 (714)
Q Consensus 235 D~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~-----~~~~~~~~~ 309 (714)
|.+-.|--||..+- ++-.++-||-++|+..|++.|.+.-+=|+.-+.+|.+==||..+-++. .-+++...-
T Consensus 166 ~~~~~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SSta 241 (546)
T KOG2431|consen 166 EKDRDVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTA 241 (546)
T ss_pred ccccceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchh
Confidence 34456777887775 788888899999999999999999999999888887766765442211 000110111
Q ss_pred CCceEeechHHHHHHhhhh------HHHHHHHhcccCC---CCcCCCCCCCC-CCccCCcceecccCCc--hHHHHhcCC
Q 005115 310 EGAFYVWTSKEVEDILGEH------AILFKEHYYLKPT---GNCDLSRMSDP-HNEFKGKNVLIELNDS--SASASKLGM 377 (714)
Q Consensus 310 EG~yY~Wt~~Ei~~~L~~~------~~~~~~~~~v~~~---Gn~~~~~~~d~-~~~~eg~niL~~~~~~--~~~a~~~g~ 377 (714)
|=.--.-...++..+.|+. ..+....+++... |-++. ..+| .|.|.+.||-...... -|.
T Consensus 242 EvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi--~in~~tG~F~~~tI~lGaRgDSyYEY------ 313 (546)
T KOG2431|consen 242 EVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI--FINPNTGLFVGSTITLGARGDSYYEY------ 313 (546)
T ss_pred hheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE--EEcCCCCccccceEEeccccchHHHH------
Confidence 1111112233444444531 1233334455332 22211 1123 3677777664333221 111
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHH
Q 005115 378 PLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAA 457 (714)
Q Consensus 378 ~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~ 457 (714)
+ .++.|..-++. ..+. ++|.++-.-.-
T Consensus 314 -------L---lKQwlQtg~~~--------------------------~~l~-----------------~dy~~am~gv~ 340 (546)
T KOG2431|consen 314 -------L---LKQWLQTGKSL--------------------------TYLR-----------------DDYIEAMEGVR 340 (546)
T ss_pred -------H---HHHHHHcccch--------------------------hHHH-----------------HHHHHHHHHHH
Confidence 1 12222210000 0011 23444333333
Q ss_pred HHHHHhccccCCCeEEE-EecCCCCCCCCCcchHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhcccccCCc--
Q 005115 458 SFIRRHLYDEQTHRLQH-SFRNGPSKAPGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGG-- 531 (714)
Q Consensus 458 ~~l~~~l~d~~~G~l~~-~~~~g~~~~~~~l~DyA~li~all~LyeaTg---d~~~L~~A~~L~~~~~~~F~D~~~Gg-- 531 (714)
.+|.++- .| ++.+|- ....|....++ .|--..++-|.|.+-..-| +++.++.|++|.+.+-+-+-...+|-
T Consensus 341 ~~Llr~S-~P-~~~~fiGEl~~G~~fsPK-MDHLVCFlpGtL~lG~~~Gl~~~~~hl~lA~~l~~TCyqMY~~~~TGLaP 417 (546)
T KOG2431|consen 341 KHLLRQS-KP-NKLWFIGELPHGLQFSPK-MDHLVCFLPGTLALGSTNGLPASEEHLELAQELMETCYQMYRQNPTGLAP 417 (546)
T ss_pred HHHHhcC-CC-cceEEEEecccccccCcc-cceEEEeecchhhhccccCCCcchHHHHHHHHHHHHHHHHHccCcCCCCc
Confidence 3443332 22 222222 12234321222 1222333455555544433 55799999999999987775555552
Q ss_pred ---cccCCCC--CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh-hHHHH
Q 005115 532 ---YFNTTGE--DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM-AVPLM 605 (714)
Q Consensus 532 ---ff~t~~~--~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~-~~~~~ 605 (714)
||..... ..++.+++.+.+---- -..++.|.-|+++|++ ..|++..-+++++|.... +.|. +++++
T Consensus 418 EIv~Fn~~~~~~~~DiyvKp~D~HnLlR----PEtVESlfylYriT~D---~kYqewGW~if~sfekyt-rv~~ggytSi 489 (546)
T KOG2431|consen 418 EIVHFNLYPQPGKNDIYVKPLDRHNLLR----PETVESLFYLYRITGD---RKYQEWGWEIFQSFEKYT-RVPSGGYTSI 489 (546)
T ss_pred eEEEEeccCCCccCceeeccchhhcccC----hHHHhhhheeeEecCC---chHHHHhHHHHHHHHHhc-ccCCCCccch
Confidence 6665432 3455554443311111 1478889999999996 789999999999987654 5565 66664
No 274
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=62.11 E-value=67 Score=35.99 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=68.4
Q ss_pred CCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEEecCCCCC
Q 005115 405 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHSFRNGPSK 482 (714)
Q Consensus 405 ~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G--~l~~~~~~g~~~ 482 (714)
.|..-=|+---.+.+||.+|++.-++ ++|++.|+.+++-|.++...+..| .++.--..|-..
T Consensus 109 ~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~ 172 (376)
T PRK11097 109 LDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFAD 172 (376)
T ss_pred CCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeeccccccccC
Confidence 45555555556789999999999998 789999999999999987764444 222100111000
Q ss_pred CCCC-cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005115 483 APGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 524 (714)
Q Consensus 483 ~~~~-l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F 524 (714)
.... ++.-=++...+-.+++++++..|.+.+....+.+.+.-
T Consensus 173 ~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 173 DGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 0111 22222344555566788999999999998888887643
No 275
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=61.47 E-value=9.5 Score=35.76 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=22.4
Q ss_pred cCceEEeCCCCcccccc-cccCCCCCCCCccHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILR 107 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~-ty~p~~~~~~~~~f~~~L~ 107 (714)
.|.+++++++|+..+.. ++-+. ..|.+.++|.
T Consensus 110 ~~~~~iid~~G~I~~~~~~~~~~----~~~~~~~~~~ 142 (143)
T cd03014 110 ARAVFVIDENGKVIYVELVPEIT----DEPDYEAALA 142 (143)
T ss_pred ceEEEEEcCCCeEEEEEECCCcc----cCCCHHHHhh
Confidence 68999999999998764 23332 2467777663
No 276
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=60.94 E-value=6.2 Score=36.91 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=33.5
Q ss_pred cccCCcccCCCCCChhhHhhhhhhCCCHHHHHHH-----hcccEEEEE-cCCCCccHHHHHHHHHHHhcCCCCcCceEEe
Q 005115 5 SFCGGTKTRRTHFLIKCHVMEVESFEDEGVAKLL-----NDWFVSIKV-DREERPDVDKVYMTYVQALYGGGGWPLSVFL 78 (714)
Q Consensus 5 ~~~~~~~~~~t~wC~wC~~M~~e~f~~~~va~~l-----n~~Fv~vkv-D~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl 78 (714)
.|+|+..+.-.+||+.|..-+.- |.+.+ |-+||-|.| ||.+-.+-++-|.+- --....++||.+=.
T Consensus 25 ~F~gs~d~~g~sWCPDC~~aep~------v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~--p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 25 LFTGSKDETGQSWCPDCVAAEPV------VEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD--PDLKLKGIPTLIRW 96 (119)
T ss_dssp EEE--B-TTS-BSSHHHHHHHHH------HHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH----CC---SSSEEEEC
T ss_pred EEEccCCCCCCcccHHHHHHHHH------HHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc--ceeeeeecceEEEE
Confidence 37888777888999999986532 33333 334555555 443322333344320 01245789999888
Q ss_pred CCCC
Q 005115 79 SPDL 82 (714)
Q Consensus 79 ~p~g 82 (714)
...+
T Consensus 97 ~~~~ 100 (119)
T PF06110_consen 97 ETGE 100 (119)
T ss_dssp TSS-
T ss_pred CCCC
Confidence 6553
No 277
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=60.93 E-value=1.1e+02 Score=35.84 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=41.4
Q ss_pred chhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 005115 408 KVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 475 (714)
Q Consensus 408 Kilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~ 475 (714)
-|-++-|+++.. .|++.++.+|+.... ..|.+.|.+..+.|.+.|||+++|.++..
T Consensus 304 iipVDLNa~L~~~e~~LA~~a~~lG~~~~a------------~~~~~~A~~~~~aI~~~lWdee~g~~~Dy 362 (512)
T PF01204_consen 304 IIPVDLNAILYRNEKDLAEFAELLGDQEKA------------EEYRQRAEERKEAINQYLWDEEDGFYYDY 362 (512)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHHTT-HHHH------------HHHHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred ecCchHHHHHHHHHHHHHHHHHHcCchhHH------------HHHHHHHHHHHHHHHHhCccCCCCeEEee
Confidence 345578898766 688889999863211 57999999999999999999988876653
No 278
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=60.35 E-value=81 Score=34.47 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC-CCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~-~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
+..++.-+...+|+.++-.. +|-+.-+- .++.+ ..-....--=+|.-|...|++-.+++||+.|.+-.+.+.++=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 56778888889998876543 34333221 11110 0000111112578899999999999999999999998876522
Q ss_pred cccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005115 526 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 590 (714)
Q Consensus 526 D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~ 590 (714)
=+.+-| +-+| -+||+- .++.|+++|++ .+|..||.+..+.
T Consensus 318 Lkkg~G-----------------ichG--vaGNaY---vFLsLyRLT~d---~kYlyRA~kFae~ 357 (403)
T KOG2787|consen 318 LKKGVG-----------------ICHG--VAGNAY---VFLSLYRLTGD---MKYLYRAKKFAEW 357 (403)
T ss_pred hhcCCc-----------------cccc--ccCchh---hhHhHHHHcCc---HHHHHHHHHHHHH
Confidence 111111 1122 356653 56778889986 7899999654333
No 279
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=58.71 E-value=12 Score=34.73 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=11.3
Q ss_pred CCCCChhhHhhhhhh
Q 005115 14 RTHFLIKCHVMEVES 28 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~ 28 (714)
.+.||.+|.....+.
T Consensus 31 ~~~~c~~C~~~~~~l 45 (140)
T cd02971 31 PKDFTPVCTTELCAF 45 (140)
T ss_pred CCCCCCcCHHHHHHH
Confidence 378999999875443
No 280
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=58.20 E-value=28 Score=30.91 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhccCCCCcee
Q 005115 270 SYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 270 ~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
...++++++||++ ++.++|||-
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cHHHHHHHHHHHH-hcCCCCCCC
Confidence 7788999999998 788999983
No 281
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=57.17 E-value=2.2e+02 Score=33.94 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccC
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 529 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~~~-g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~ 529 (714)
+.|+++.....+.+. +|.+-+.+.+ |....-+..|---|+|.++-++++.|+|..+++.-...+..+++.+.+..
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~- 388 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGN- 388 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 556666655555553 3555444333 22223346677789999999999999999888766655555555554421
Q ss_pred CccccCCCCCCccc-----cccccC---------CCCCCCChHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHH
Q 005115 530 GGYFNTTGEDPSVL-----LRVKED---------HDGAEPSGNSVSVINLVRLASI---VAGSKSDYYRQNAEHSLAVFE 592 (714)
Q Consensus 530 Ggff~t~~~~~~li-----~r~k~~---------~D~a~PS~nsvaa~~LlrL~~l---t~~~~~~~y~e~A~~~l~~~~ 592 (714)
+|--....+ .++ +.+++. -+|+.---|+.+..+|..++.+ .|+. ...|.+.|+++-+.|.
T Consensus 389 -~~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 389 -DFAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred -CcEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 111000000 111 113332 2333344567777776665444 4542 2568888888777776
Q ss_pred HHH
Q 005115 593 TRL 595 (714)
Q Consensus 593 ~~i 595 (714)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 544
No 282
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=56.40 E-value=2.5e+02 Score=31.67 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC--------CCC------------CC-CcchHHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SKA------------PG-FLDDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~--------~~~------------~~-~l~DyA~li~all~LyeaTg 505 (714)
++.|+.++-.++||++.... .|.|+....+|. +.. .. -.+--+-++.+|...+.+-.
T Consensus 94 ~dllde~kwg~D~llkm~~~--~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k 171 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQDS--DGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFK 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBSC--TTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCC--CCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999999999976644 466666543331 100 01 11112344555555555544
Q ss_pred C--h----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005115 506 G--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 579 (714)
Q Consensus 506 d--~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~ 579 (714)
+ + ++|+.|+++++.+.++. +.|++...... ...+.. -+-...++++-..|+..||+ ..
T Consensus 172 ~~d~~~A~~~L~~A~~~~~~a~~~~-----~~~~~~~~~~~------~~~Y~~--~~~~De~~wAA~~Ly~aTg~---~~ 235 (444)
T PF00759_consen 172 DFDPAYAAQCLKAAKEAYAFAKKNP-----GVYSDNPQPNG------GGFYNS--SGYEDELAWAAAELYRATGD---ES 235 (444)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHST-----THGGGTSTCTT------TTTSHC--S-SHHHHHHHHHHHHHHHT----HH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCC-----CcccCCccccc------CCcccC--CCcccHHHHHHHHHHHhcCc---HH
Confidence 3 4 67888888888876542 23333221110 000000 11233577788889999995 78
Q ss_pred HHHHHHHHHHHH
Q 005115 580 YRQNAEHSLAVF 591 (714)
Q Consensus 580 y~e~A~~~l~~~ 591 (714)
|++.+++....+
T Consensus 236 Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 236 YLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHCCTS
T ss_pred HHHHHHHhHHhh
Confidence 999887766443
No 283
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=56.26 E-value=20 Score=38.69 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=39.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh-----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCce
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 75 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln-----~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~ 75 (714)
..||+||.+..++. -.|+. -|+.+. ..=|--+||.+..-+|...| -+.-+||.
T Consensus 19 ~FyAdWCrFSq~L~-piF~E--Aa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky--------~I~KyPTl 76 (375)
T KOG0912|consen 19 NFYADWCRFSQMLK-PIFEE--AAAKFKQEFPEGKVVWGKVDCDKEDDIADKY--------HINKYPTL 76 (375)
T ss_pred eeehhhchHHHHHh-HHHHH--HHHHHHHhCCCcceEEEEcccchhhHHhhhh--------ccccCcee
Confidence 47999999998876 56643 233333 34477889999999999999 45678876
No 284
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=55.67 E-value=33 Score=36.37 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=37.8
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccE---EEEEcCCCCccHHHHHHH--HHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFV---SIKVDREERPDVDKVYMT--YVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv---~vkvD~ee~p~i~~~y~~--~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
-.|.+-|.+||.|.. -|..+-+++=| +|-+|-.--|.+...-+. ..+.+ |..-+|.+++++|+.+-
T Consensus 156 fFy~~~C~~C~~~ap------il~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 156 FFYRGKSPISQKMAP------VIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQK 226 (256)
T ss_pred EEECCCCchhHHHHH------HHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCCc
Confidence 457788999999984 35444444433 344444333443221111 11222 56679999999999553
No 285
>PRK13191 putative peroxiredoxin; Provisional
Probab=55.58 E-value=19 Score=37.00 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=25.7
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
..|.++|++|+|+..+...|=.+ .|+ .+-++|+.|..
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~~~~---~gr-~~~eilr~l~a 159 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYYPME---IGR-NIDEILRAIRA 159 (215)
T ss_pred eeEEEEEECCCCEEEEEEecCCC---CCC-CHHHHHHHHHH
Confidence 47999999999998875443222 222 78888887643
No 286
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=55.52 E-value=15 Score=36.98 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=22.0
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
.+|.+++++|+|+..+...+-.+. | ....++|+.|
T Consensus 126 ~~r~~fiID~~G~i~~~~~~~~~~---~-r~~~e~l~~l 160 (199)
T PTZ00253 126 AYRGLFIIDPKGMLRQITVNDMPV---G-RNVEEVLRLL 160 (199)
T ss_pred eEEEEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHH
Confidence 368999999999987654332222 1 2566666654
No 287
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=52.93 E-value=1.9e+02 Score=31.88 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=80.2
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCC-CC---CCCcchHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcccc
Q 005115 454 ESAASFIRRHLYDEQTHRLQHSFRNGPS-KA---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~~G~l~~~~~~g~~-~~---~~~l~DyA~li~all~LyeaTg--d~~~L~~A~~L~~~~~~~F~D~ 527 (714)
.++.+|.++|+..+++|.+-+.+..+.. .. ..=.|+=-+.+.|||...+.-| ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 4678888999985556766666543322 11 2234555788999999999999 558999999999998777654
Q ss_pred cCCccccCCCC-----CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005115 528 EGGGYFNTTGE-----DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 528 ~~Ggff~t~~~-----~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i 595 (714)
.|...-.+.+ +...++ -||=- +.-++..++..+++ ..|.+.++..++.+....
T Consensus 154 -~g~~~llpG~~~f~~~~~~~~---------npSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGFNSDDYWTT---------NPSYF--MPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSCBTTSEEEE---------EGGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCCCCceEe---------Chhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 3432222221 011111 13332 33456688899985 679988888887665443
No 288
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=50.38 E-value=27 Score=32.47 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.||..|..--.+ ++ +..+.+. +++..|-|..+...... .| . ...++|.-++.+|+++..
T Consensus 32 ~~~~Cp~C~~~~~~-l~--~~~~~~~~~~v~vv~V~~~~~~~~~-~~---~----~~~~~~~p~~~D~~~~~~ 93 (149)
T cd02970 32 RGFGCPFCREYLRA-LS--KLLPELDALGVELVAVGPESPEKLE-AF---D----KGKFLPFPVYADPDRKLY 93 (149)
T ss_pred CCCCChhHHHHHHH-HH--HHHHHHHhcCeEEEEEeCCCHHHHH-HH---H----HhcCCCCeEEECCchhHH
Confidence 37899999975433 21 2222232 45556666655432222 22 1 234677778999998755
No 289
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=49.40 E-value=89 Score=29.95 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=41.8
Q ss_pred hhhCCCHHHHHHHhcccEEEEEcCCCCccHHH--------HHHHHHHHhcC--CCCcCceEEeCCCCc
Q 005115 26 VESFEDEGVAKLLNDWFVSIKVDREERPDVDK--------VYMTYVQALYG--GGGWPLSVFLSPDLK 83 (714)
Q Consensus 26 ~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~--------~y~~~~q~~~g--~~g~P~~vfl~p~g~ 83 (714)
++++.+++|.+++|.|||.---|........+ .=+.+.|++.. ..-+|...++.+..+
T Consensus 41 ~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP~~avI~~~~~ 108 (136)
T cd02990 41 SQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLPAILIIMGKRS 108 (136)
T ss_pred HHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCCeEEEEEecCC
Confidence 57999999999999999999988655322111 11235566653 678999999987765
No 290
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=48.78 E-value=28 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++|+.+|++.+.+...+..+.++|++
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999863
No 291
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=48.36 E-value=1.7e+02 Score=31.48 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhccCCCCceeeecc
Q 005115 271 YICRDILDYLRRDMIGPGGEIFSAED 296 (714)
Q Consensus 271 ~~A~~~~~fl~~~m~~p~Ggfysa~D 296 (714)
..|..++.||.+. +..+|||.|++|
T Consensus 262 ~~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 262 EYANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred hhHHHHHHHHHhc-CCCCCCeehHHH
Confidence 3688999999985 566899999887
No 292
>PLN00119 endoglucanase
Probab=47.60 E-value=5.2e+02 Score=30.17 Aligned_cols=116 Identities=10% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------CCC---------cchH-HHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------PGF---------LDDY-AFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-----------~~~---------l~Dy-A~li~all~LyeaTg 505 (714)
+..|+.++-..+|+++.... .+.+++...+|.... .+. -.|- +-++.+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~~--~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHPQ--PNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 67899999999999987533 466776543332110 011 0122 334444545555444
Q ss_pred --ChH----HHHHHHHHHHHHHHh---cccc--cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 506 --GTK----WLVWAIELQNTQDEL---FLDR--EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 506 --d~~----~L~~A~~L~~~~~~~---F~D~--~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
|+. .|+.|+++++.+..+ +.+. ..++||.+. +-.-.++++-..|+..||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss-------------------~~~DEl~WAAawLY~aTgd 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASS-------------------GYEDELLWAAAWLHRATND 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCC-------------------chhhHHHHHHHHHHHHhCC
Confidence 444 588888888888663 1010 011233221 1122577888889999996
Q ss_pred CCchHHHHHHHH
Q 005115 575 SKSDYYRQNAEH 586 (714)
Q Consensus 575 ~~~~~y~e~A~~ 586 (714)
..|.+.+..
T Consensus 256 ---~~Yl~~~~~ 264 (489)
T PLN00119 256 ---QTYLDYLTQ 264 (489)
T ss_pred ---HHHHHHHHh
Confidence 678876643
No 293
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.31 E-value=20 Score=41.74 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=45.6
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE---EcC--CCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK---VDR--EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk---vD~--ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+|++||+-|+..+ =||+. +|+.+.+.-=.|+ ||- ++.-.+=+.| ++.|+|+.-+.-|+-+...
T Consensus 63 EFy~swCGhCr~FA-Ptfk~--~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef--------~V~~~Ptlryf~~~~~~~~ 131 (606)
T KOG1731|consen 63 EFYNSWCGHCRAFA-PTFKK--FAKDLEKWRPVVRVAAVDCADEENVKLCREF--------SVSGYPTLRYFPPDSQNKT 131 (606)
T ss_pred HHHHhhhhhhhhcc-hHHHH--HHHHHhcccceeEEEEeeccchhhhhhHhhc--------CCCCCceeeecCCccccCc
Confidence 46999999999988 45654 7777776555555 443 3333333444 8899999999999866543
Q ss_pred cc
Q 005115 87 GG 88 (714)
Q Consensus 87 ~~ 88 (714)
-|
T Consensus 132 ~G 133 (606)
T KOG1731|consen 132 DG 133 (606)
T ss_pred CC
Confidence 33
No 294
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=46.93 E-value=73 Score=35.55 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=45.9
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-c-CCCCC---C
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-R-NGPSK---A 483 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~-~g~~~---~ 483 (714)
.-.+-|...|..+.+.++.+||.... .+....++++++++.. +|+++-++.... . |..-+ .
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL------------~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~ 161 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFL------------KEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSM 161 (365)
T ss_dssp ---------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EE
T ss_pred ccccccccccccccccccccccchhh------------hhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCe
Confidence 33445688899999999999982100 2334588889999987 554333343321 1 00000 0
Q ss_pred CCCcchH-----HHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcccc
Q 005115 484 PGFLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 534 (714)
Q Consensus 484 ~~~l~Dy-----A~li~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~ 534 (714)
.| ..-| ..++.++.++.++-|++ +|-+.+++..+.+.+.+|+ |.||.
T Consensus 162 ~G-~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 162 YG-PSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EE-EEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred eC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 11 1222 34566778888888985 5778888888888888996 45776
No 295
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=46.44 E-value=1.5e+02 Score=35.63 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCC-------CCC---CCcchHHHHHHHHHHHHHHcC---
Q 005115 447 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPS-------KAP---GFLDDYAFLISGLLDLYEFGS--- 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l---~d~~~G~l~~~-----~~~g~~-------~~~---~~l~DyA~li~all~LyeaTg--- 505 (714)
.+.+..+..+.+++.+.+ .+..+.++.+. +.|+.. ... ...+=+.+++.++..+.+.-+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 466778888888887766 22223334432 222211 001 122233447788888888777
Q ss_pred -ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccc
Q 005115 506 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 546 (714)
Q Consensus 506 -d~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~ 546 (714)
-++|.+.|.++.+.+.+.||.+ .+||+...+++....|+
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~ 481 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRP 481 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCc
Confidence 5678999999999999999986 56888776665555554
No 296
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=46.42 E-value=77 Score=35.37 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHH----HHHHHHHHHHHH
Q 005115 244 EKMLYDQGQLANVYLDAFSLTKDVFYS----YICRDILDYLRR 282 (714)
Q Consensus 244 EKMLyDNA~ll~~y~~Ay~~t~d~~y~----~~A~~~~~fl~~ 282 (714)
..+.-.|...|..-.+.|+.|||..|+ ..++++++|+.+
T Consensus 95 ~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 95 YAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ----------------------------EHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 344444777777778899999998776 468999999998
No 297
>PLN02567 alpha,alpha-trehalase
Probab=46.16 E-value=3.9e+02 Score=31.64 Aligned_cols=137 Identities=13% Similarity=0.090 Sum_probs=74.2
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCC---
Q 005115 411 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKA--- 483 (714)
Q Consensus 411 t~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~--- 483 (714)
++-|++|.. .|++.++.+|+... ..+|.+.|.+..+.|.+.+|+++.|.++.- .+.++...
T Consensus 328 VDLNa~L~~~e~~LA~la~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~ 395 (554)
T PLN02567 328 VDLNAFLLKMELDIAFFAKLLGDKAT------------AERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQES 395 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHhcCcccCeEEeecccccccccccc
Confidence 567787755 58888888887311 156888999999999999999888766553 23332110
Q ss_pred ---C-CCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hcccccCCccccCCCCCCccccccccCCCC--CCCC
Q 005115 484 ---P-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPS 556 (714)
Q Consensus 484 ---~-~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~-~F~D~~~Ggff~t~~~~~~li~r~k~~~D~--a~PS 556 (714)
. ....+ .+.+.+++=|+-=.-++. -..|..+.+.+.+ .|+.+ ||.-.+. ......=|+ +=|-
T Consensus 396 ~~~~~~~~~~-~~~~s~f~PLw~g~~~~~-~~~a~~v~~~l~~~~l~~p--gGiptsl-------~~sg~qWdgPn~W~p 464 (554)
T PLN02567 396 YTWDAENQNT-NVYASNFVPLWCGVVPPG-DAKVEKVVESLKSSGLVLP--AGIATSL-------RNTGQQWDFPNAWAP 464 (554)
T ss_pred cccccccccc-CccHHHHHHHHcCCCChh-hHHHHHHHHHHHhccCccC--CcccCCC-------CCccccCCCCCcCHh
Confidence 0 00001 233466666664222221 2246667776653 45442 3332211 111111233 2345
Q ss_pred hHHHHHHHHHHHHH
Q 005115 557 GNSVSVINLVRLAS 570 (714)
Q Consensus 557 ~nsvaa~~LlrL~~ 570 (714)
.|-+++..|.+.+.
T Consensus 465 l~~l~i~GL~~yG~ 478 (554)
T PLN02567 465 LQHMIVEGLAASGS 478 (554)
T ss_pred HHHHHHHHHHHcCC
Confidence 56667777766543
No 298
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=45.99 E-value=42 Score=34.69 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 328 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 328 ~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++...||+.... + .+..++|+.+|++.+.+.+....++++|+.
T Consensus 181 er~vl~l~ygl~~~~---------------~-------~t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 181 ERKVLRMRYGLLDGR---------------P-------HTLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred HHHHHHHHhCCCCCC---------------C-------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 466788888874321 1 246799999999999999999999999986
No 299
>PRK13271 treA trehalase; Provisional
Probab=45.66 E-value=50 Score=39.02 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=37.0
Q ss_pred chHHHHHHH---HHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005115 488 DDYAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 537 (714)
Q Consensus 488 ~DyA~li~a---ll~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~ 537 (714)
+=.|+++.+ |.++++..|+. .|.++|.++.+.+.+.|||++.|.||+...
T Consensus 340 DLNALLy~ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 340 DLNALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 334444443 44556677765 689999999999999999998888887653
No 300
>PRK10137 alpha-glucosidase; Provisional
Probab=45.49 E-value=3.2e+02 Score=33.79 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=38.4
Q ss_pred hchHHHHH---HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 005115 411 VSWNGLVI---SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 473 (714)
Q Consensus 411 t~WNal~I---~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~ 473 (714)
++-|++|+ ..|++.++++|+... ..+|.+.|.++.+.|.+.+|+++.|.++
T Consensus 578 VDLNsyLy~a~~~LA~LAe~LG~~e~------------A~~~~~~A~~Lr~aIn~~~WDee~GfY~ 631 (786)
T PRK10137 578 VDQASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDETTGFYY 631 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHccCCcCCeEE
Confidence 34555555 679999999986211 1468889999999999999998877665
No 301
>PRK13189 peroxiredoxin; Provisional
Probab=45.36 E-value=45 Score=34.38 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=23.8
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
..|.++|++|+|+..+...| |.. .| ..+-++|+.|..
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~-~~~--~g-r~~~eilr~l~a 161 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYY-PQE--VG-RNMDEILRLVKA 161 (222)
T ss_pred ceeEEEEECCCCeEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 57999999999998754322 211 12 257777776643
No 302
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=45.17 E-value=5.4 Score=35.61 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 253 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 253 ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
....++.++...+++.+.+.++++++||++. +.++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~-Q~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSH-QNPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCCCCC
Confidence 3334445555567888999999999999985 57789884
No 303
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=44.44 E-value=1.1e+02 Score=32.02 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcE
Q 005115 150 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGF 229 (714)
Q Consensus 150 ~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF 229 (714)
...+.++...|.+.. ++...+..+.++-+.....+ +......+...|+.++. +.+|+.
T Consensus 112 ~~~i~kA~~~L~~~~----------~~~~~~Y~lAl~aYAL~la~-------~~~~~~~~~~~L~~~a~-----~~~~~~ 169 (246)
T PF07678_consen 112 ENAINKALNYLERHL----------DNIQDPYTLALVAYALALAG-------DSPQASKLLNKLNSMAT-----TEGGLR 169 (246)
T ss_dssp HHHHHHHHHHHHHHH----------GCTSSHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHCHCE-----ETTTTC
T ss_pred HHHHHHHHHHHHHhc----------cccCCHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHhhh-----hccccC
Confidence 466788888887753 45566666665544433321 12334445556666554 334554
Q ss_pred EEEecCCCCCCCCCc---hh---HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 005115 230 HRYSVDERWHVPHFE---KM---LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 296 (714)
Q Consensus 230 ~RYsvD~~W~vPHFE---KM---LyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~D 296 (714)
| +..+.....+..- -- +=-.|..|.++.+. ++ ...+..++.||.+. +.+.|||.|++|
T Consensus 170 ~-W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~----~~---~~~~~~iv~WL~~q-r~~~Ggf~STQd 233 (246)
T PF07678_consen 170 Y-WSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR----GD---LEEASPIVRWLISQ-RNSGGGFGSTQD 233 (246)
T ss_dssp E-E-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHC-TTTTSSTSSHHH
T ss_pred c-ccCCcccccccccccccchHHHHHHHHHHHHHHhc----cc---HHHHHHHHHHHHHh-cCCCCccCcHHH
Confidence 4 6666654433211 01 11134444444444 43 35788999999985 466899999886
No 304
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=43.90 E-value=63 Score=26.34 Aligned_cols=57 Identities=12% Similarity=-0.053 Sum_probs=36.9
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
++.||.||++..- +.+..+-.|=.+.||....+ ..| ..++..+..|+.+ +.||..++
T Consensus 5 ~~~~~p~~~rv~~-------~L~~~gl~~e~~~v~~~~~~---~~~----~~~np~~~vP~L~--~~~g~~l~ 61 (71)
T cd03060 5 SFRRCPYAMRARM-------ALLLAGITVELREVELKNKP---AEM----LAASPKGTVPVLV--LGNGTVIE 61 (71)
T ss_pred ecCCCcHHHHHHH-------HHHHcCCCcEEEEeCCCCCC---HHH----HHHCCCCCCCEEE--ECCCcEEe
Confidence 5789999998541 34455666777888876443 223 2356788999874 34576654
No 305
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=43.71 E-value=6.2e+02 Score=29.95 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=62.5
Q ss_pred hHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCC----
Q 005115 413 WNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSK---- 482 (714)
Q Consensus 413 WNal~I~a---La~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~--~g~~~---- 482 (714)
|=||-.|. +++.|-++|| ++....-.+-+.+++.+..-..+|.+..-. - .|+|.
T Consensus 405 WfG~Q~Wsm~R~AeyYy~tGd----------------~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~WSGqPDtW~~ 468 (619)
T PF02011_consen 405 WFGMQAWSMERVAEYYYETGD----------------ARAKAILDKWVAWALSNTTVNSDGTFEIPSTLEWSGQPDTWTG 468 (619)
T ss_dssp BTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEEEES-----TT
T ss_pred cccccchhHHHHHHHHHHhcc----------------HHHHHHHHHHHHHHHhhceeCCCCcEecCCCCcccCCCCCccC
Confidence 66776665 4556667777 566677777788888875433345443211 0 34431
Q ss_pred -------C----CCCcchH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005115 483 -------A----PGFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 528 (714)
Q Consensus 483 -------~----~~~l~Dy---A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~ 528 (714)
. ..+-.|- +.++.+|+-....+++.+..+.|++|++.|.++..|..
T Consensus 469 s~t~N~nLHV~V~~yg~DvGva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~~D~~ 528 (619)
T PF02011_consen 469 SPTGNPNLHVTVTDYGQDVGVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNYQDDK 528 (619)
T ss_dssp S----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCECTT
T ss_pred CCCCCCceEEEEecCCCchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 1 1112233 67888999899999999999999999999999887754
No 306
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=43.27 E-value=55 Score=27.11 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
+..+|+||++..- +.+..+=.|-.+.|+.++. ...| ..+++.+-.|..+ +||..++.
T Consensus 3 ~~~~Sp~~~kv~~-------~l~~~~i~~~~~~v~~~~~---~~~~----~~~~p~~~vPvL~---~~g~~l~d 59 (75)
T PF13417_consen 3 GFPGSPYSQKVRL-------ALEEKGIPYELVPVDPEEK---RPEF----LKLNPKGKVPVLV---DDGEVLTD 59 (75)
T ss_dssp EETTSHHHHHHHH-------HHHHHTEEEEEEEEBTTST---SHHH----HHHSTTSBSSEEE---ETTEEEES
T ss_pred CcCCChHHHHHHH-------HHHHcCCeEEEeccCcccc---hhHH----HhhcccccceEEE---ECCEEEeC
Confidence 4579999999662 4566666777788887765 2222 3456788899875 45777754
No 307
>PLN02909 Endoglucanase
Probab=43.15 E-value=6e+02 Score=29.64 Aligned_cols=141 Identities=10% Similarity=0.008 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--CCc----
Q 005115 414 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFL---- 487 (714)
Q Consensus 414 Nal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~--~~l---- 487 (714)
.|..++.|++++..+++.. ...| ..++.|+.++-..+|+++.... +|.++|...++..... +.+
T Consensus 95 ~a~s~~~L~w~~~~y~~~~-------~~~g-~~~d~ldeikw~~D~llk~~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~ 164 (486)
T PLN02909 95 MAFTVTTLAWSTLAYEKEL-------RATG-ELENVRAAIRWGTDYFLKAASR--KNRLYVQVGDPNLDHQCWVRPENMK 164 (486)
T ss_pred hHHHHHHHHHHHHHhHHHH-------hhcC-ChHHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcc
Confidence 3666666666665554411 0112 1278999999999999976543 5788886443321100 111
Q ss_pred ---------------chHHHHHHHHHHHHHHcC--Ch----HHHHHHHHHHHHHHHhc--ccccCCccccCCCCCCcccc
Q 005115 488 ---------------DDYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLL 544 (714)
Q Consensus 488 ---------------~DyA~li~all~LyeaTg--d~----~~L~~A~~L~~~~~~~F--~D~~~Ggff~t~~~~~~li~ 544 (714)
+--+.++.+|...+.+-. |+ ++|+.|+++++...++= ++. ..+||.....
T Consensus 165 ~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~-~~~~y~s~s~------ 237 (486)
T PLN02909 165 TPRTVLEIDEKTPGTEIAAETAAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDG-ECPFYCSYSG------ 237 (486)
T ss_pred CCceeEecCCCCCCcHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCccccCCC------
Confidence 112344555555555543 44 46888888888886641 000 0122221100
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005115 545 RVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 586 (714)
Q Consensus 545 r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~ 586 (714)
-+-.++++-..|+..||+ ..|.+.+..
T Consensus 238 ------------y~DEl~WAAawLy~aTgd---~~Yl~~~~~ 264 (486)
T PLN02909 238 ------------YNDELLWAATWLYKATKK---QMYLKYIKH 264 (486)
T ss_pred ------------cchHHHHHHHHHHHHhCC---HHHHHHHHh
Confidence 023677777788888885 667776543
No 308
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=42.57 E-value=45 Score=38.86 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=38.3
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 328 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 328 ~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++..+||+.... ..++.++++.+|++.+++.++-.++..||+..
T Consensus 452 Er~VI~lRyGL~~~e----------------------~~TL~EIa~~lGVSrERVRQIe~kAL~KLR~~ 498 (509)
T PRK05901 452 EAGVIRMRFGLTDGQ----------------------PKTLDEIGQVYGVTRERIRQIESKTLRKLRHP 498 (509)
T ss_pred HHHHHHHHhhccCCC----------------------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 567889999995321 13578999999999999999999999999873
No 309
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=42.13 E-value=1.9e+02 Score=32.51 Aligned_cols=140 Identities=22% Similarity=0.263 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC------CCCCCC--CCcc
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN------GPSKAP--GFLD 488 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~------g~~~~~--~~l~ 488 (714)
.|+-|++||..++| +.||..|.++..--+ +.. .+|+....+.+ .-|..+ =.++
T Consensus 427 aISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEYPTTP~SfVLN 487 (594)
T KOG3760|consen 427 AISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEYPTTPGSFVLN 487 (594)
T ss_pred chHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhcCCCCcceeeh
Confidence 48999999999998 799998887763221 222 23444443322 222222 2345
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------HHHHhcccccCCccccCCC----CCCccccccccCCCCCCCCh
Q 005115 489 DYAFLISGLLDLYEFGSGTKWLVWAIELQN-------TQDELFLDREGGGYFNTTG----EDPSVLLRVKEDHDGAEPSG 557 (714)
Q Consensus 489 DyA~li~all~LyeaTgd~~~L~~A~~L~~-------~~~~~F~D~~~Ggff~t~~----~~~~li~r~k~~~D~a~PS~ 557 (714)
.+.+-+.||.+|=+ |-..+--..|.+|.. .|+- .+|.-+|.-|+-.. -++. +.|+ + -
T Consensus 488 GF~YSLiGLYDL~e-Ta~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APN-LARW-D--------Y 555 (594)
T KOG3760|consen 488 GFLYSLIGLYDLDE-TARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPN-LARW-D--------Y 555 (594)
T ss_pred hHHHHhhhhhccch-hhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcc-cccc-h--------h
Confidence 55444444444422 222233344444443 3332 35766666666432 1122 2222 1 1
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005115 558 NSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 590 (714)
Q Consensus 558 nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~ 590 (714)
.+.-+..|..|+.+-. ++...+.|++-...
T Consensus 556 HatHvnqL~llatId~---dpv~~~ta~RWkgY 585 (594)
T KOG3760|consen 556 HATHVNQLKLLATIDK---DPVLSKTADRWKGY 585 (594)
T ss_pred hhHHHHHHHHHhhccc---cHHHHHHHHHHHhh
Confidence 2455666777777654 36566666554443
No 310
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=42.03 E-value=3.8e+02 Score=32.38 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~-~--~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~ 527 (714)
+.|+....++.++. +.|++.|.. . +|.+ .-+..|.-=+.|..+.+.+..|+|..+++........+.+.+. .
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~-~ 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWIL-K 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-h
Confidence 57888888877773 368999975 2 2332 3345666678889999999999999998887776666665542 1
Q ss_pred cCCcc-ccCCCCC--Cc-cccccccCCC---------CCCCChHHH---HHHHHHHHHHHhCCC-CchHHHHHHHHHHHH
Q 005115 528 EGGGY-FNTTGED--PS-VLLRVKEDHD---------GAEPSGNSV---SVINLVRLASIVAGS-KSDYYRQNAEHSLAV 590 (714)
Q Consensus 528 ~~Ggf-f~t~~~~--~~-li~r~k~~~D---------~a~PS~nsv---aa~~LlrL~~lt~~~-~~~~y~e~A~~~l~~ 590 (714)
++.| |.+..+. +. -...+++..+ +..---|++ +..++.+++.+.++. +.++|.+.|+++.+.
T Consensus 378 -~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~ 456 (641)
T COG3408 378 -GFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKES 456 (641)
T ss_pred -cCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1111 2211110 00 0011111111 111124556 667788888888721 136788888888888
Q ss_pred HHHHHH
Q 005115 591 FETRLK 596 (714)
Q Consensus 591 ~~~~i~ 596 (714)
|....-
T Consensus 457 F~~~fw 462 (641)
T COG3408 457 FEAKFW 462 (641)
T ss_pred HHHHhh
Confidence 876653
No 311
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=41.73 E-value=6.9e+02 Score=29.98 Aligned_cols=290 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCcCceEEeCCCCcccccccccCCCCC---------CCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhccc
Q 005115 69 GGGWPLSVFLSPDLKPLMGGTYFPPEDK---------YGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASA 139 (714)
Q Consensus 69 ~~g~P~~vfl~p~g~p~~~~ty~p~~~~---------~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~~~~~~~~ 139 (714)
.++||. ..+.|.-++..-+..+... .-..++..+|++....|+.=-+++....+.....+......
T Consensus 178 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~Wr~w~~~~~~~~~~~~~~~~rS~l~-- 252 (612)
T COG3387 178 AGGYPF---MLKPGSSIFVYLYGFPDKNYEAFRQAGLVLKRGYELILERTTDYWRSWLSKLNPLGRAYASALYRSALV-- 252 (612)
T ss_pred cccccc---ccCCCceEEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHH--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHH--------------HHhhhhhcccCCCCCCHHH
Q 005115 140 SSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMM--------------LYHSKKLEDTGKSGEASEG 205 (714)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~L--------------l~~~~~~~~~~~~~~~~~~ 205 (714)
++...|..-|++..+|-+|.|....-. .......+.
T Consensus 253 --------------------l~~~~~~~~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~---------- 302 (612)
T COG3387 253 --------------------LKALNYNPTGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGY---------- 302 (612)
T ss_pred --------------------HHHcccCCCCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCC----------
Q ss_pred HHHHHHHHHHHHhCCCcccCCCcEEEEecCCC-----CCC-----CCCchhHHHHHHHHHHHHHHHHccCC-----hHHH
Q 005115 206 QKMVLFTLQCMAKGGIHDHVGGGFHRYSVDER-----WHV-----PHFEKMLYDQGQLANVYLDAFSLTKD-----VFYS 270 (714)
Q Consensus 206 ~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~-----W~v-----PHFEKMLyDNA~ll~~y~~Ay~~t~d-----~~y~ 270 (714)
.+-+...++-|.+ +...-+-=+++|++|.. |+. =-|..++=..|...++...-+...++ ..+.
T Consensus 303 ~~~a~~~f~~l~~--~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~ 380 (612)
T COG3387 303 KKEALRFFEFLPD--VQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYA 380 (612)
T ss_pred HHHHHHHHHHHHH--hhCCCCceeeEEecCCCccccccccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred HHHHHHHHHHHH------hccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCc
Q 005115 271 YICRDILDYLRR------DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNC 344 (714)
Q Consensus 271 ~~A~~~~~fl~~------~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~ 344 (714)
..+....+|+.+ .+..|+.++.- +.|.++++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~p~~~~WE---------------er~g~~~yt--------------------------- 418 (612)
T COG3387 381 IYILPAADYLRRMEKIKANLPTPDFDLWE---------------ERGGHFTYT--------------------------- 418 (612)
T ss_pred hhhHHHHHHHHHHHhhhcCCCCCccceec---------------ccCCcccch---------------------------
Q ss_pred CCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHH
Q 005115 345 DLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARA 424 (714)
Q Consensus 345 ~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a 424 (714)
..|.|.||..++....
T Consensus 419 ----------------------------------------------------------------~~~~~agLd~A~~lA~ 434 (612)
T COG3387 419 ----------------------------------------------------------------KATVYAGLDAAADLAE 434 (612)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH--HHHHHHHHHHHH
Q 005115 425 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY--AFLISGLLDLYE 502 (714)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~Dy--A~li~all~Lye 502 (714)
..-..+.. +.|...|.++.+.+.++++..++|.+.+.+.+ .+++. |.+....+=-+.
T Consensus 435 ~~gd~~~a--------------~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~-------~~~~~vDasll~l~~fg~i 493 (612)
T COG3387 435 EFGDKGSA--------------EHWRKTADELKEAVLRRGYAEDGGYFVRSLGR-------KPDDTVDASLLGLVLFGFI 493 (612)
T ss_pred HhCCcHHH--------------HHHHHHHHHHHHHHHHhcccccCCeeehhcCC-------CccccccHHHhhccccCcc
Q ss_pred HcCChHHHHHHHHHHHHHHH
Q 005115 503 FGSGTKWLVWAIELQNTQDE 522 (714)
Q Consensus 503 aTgd~~~L~~A~~L~~~~~~ 522 (714)
-..|++.+...+++.+.+..
T Consensus 494 ~~~D~~~~~t~~~I~~~L~~ 513 (612)
T COG3387 494 PPDDPRILATVEAIERELLV 513 (612)
T ss_pred CCCCHHHHHHHHHHHHHHhh
No 312
>PRK13272 treA trehalase; Provisional
Probab=40.07 E-value=5.2e+02 Score=30.55 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=73.5
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 005115 411 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 486 (714)
Q Consensus 411 t~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~~~ 486 (714)
++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||++ .|.++.- .+.++.
T Consensus 340 VDLNalL~~~e~~LA~~~~~lG~~~~------------a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~----- 401 (542)
T PRK13272 340 VDLNSLLYHLERTLAQACASSGLAAC------------SQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL----- 401 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc-----
Confidence 457888766 57777777775211 1568889999999999999996 6655432 233332
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
.++ +.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.+..+. .+.++. -+.=|-.+-+++..|.
T Consensus 402 -~~~-~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpTt~~~s----gqQWD~-PN~WaPlq~i~i~GL~ 469 (542)
T PRK13272 402 -SEQ-VTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLATTALKT----GQQWDE-PNGWAPLQWVAVDGLR 469 (542)
T ss_pred -ccc-ccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCCCCCCc----cccCCC-CCccHhHHHHHHHHHH
Confidence 233 3367777776433332 4566777776666643 35554433211 112221 1123445556666666
Q ss_pred HHH
Q 005115 567 RLA 569 (714)
Q Consensus 567 rL~ 569 (714)
+.+
T Consensus 470 ~yG 472 (542)
T PRK13272 470 RYG 472 (542)
T ss_pred HcC
Confidence 554
No 313
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=40.06 E-value=83 Score=33.48 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=24.6
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
..|.+++++|+|+..+...|=.+. | ...-++|+.|.
T Consensus 187 a~R~tFIID~dG~I~~~~~~~~~~---g-r~v~eiLr~l~ 222 (261)
T PTZ00137 187 SHRASVLVDKAGVVKHVAVYDLGL---G-RSVDETLRLFD 222 (261)
T ss_pred eecEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 479999999999998765432221 2 26777776553
No 314
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.85 E-value=73 Score=25.59 Aligned_cols=60 Identities=10% Similarity=-0.037 Sum_probs=34.4
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
+.++|.+|+++.- +.+..+-.|-.+.+|..+.......| ..++..+.+|+.+. ++|..++
T Consensus 5 ~~~~s~~~~~~~~-------~L~~~~l~~~~~~v~~~~~~~~~~~~----~~~~p~~~vP~l~~--~~~~~l~ 64 (74)
T cd03051 5 DSPTAPNPRRVRI-------FLAEKGIDVPLVTVDLAAGEQRSPEF----LAKNPAGTVPVLEL--DDGTVIT 64 (74)
T ss_pred eCCCCcchHHHHH-------HHHHcCCCceEEEeecccCccCCHHH----HhhCCCCCCCEEEe--CCCCEEe
Confidence 4568999988552 23444555666667654322112223 34567888998754 4565553
No 315
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=39.54 E-value=76 Score=33.51 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=38.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEE---EEEcCCCCccHHHHHHH--HHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVS---IKVDREERPDVDKVYMT--YVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~---vkvD~ee~p~i~~~y~~--~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
-.|.+-|.+||.|.. -|..+-+++=+. |-+|---.|.+...-.. ..+. .|+.-+|.+++++|+.+-+
T Consensus 149 fFy~s~Cp~C~~~aP------il~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 149 FFYRGQDPIDGQLAQ------VINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR-LGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred EEECCCCchhHHHHH------HHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh-cCCcccceEEEEECCCCcE
Confidence 457788999999984 365555554444 44554323332111000 0111 2556789999999986433
No 316
>PLN02993 lupeol synthase
Probab=39.29 E-value=1.8e+02 Score=35.68 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCC---------CCC
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPS---------KAP 484 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~-~G~l~~~~~~g~~---------~~~ 484 (714)
++++.||.+++. . +++-...+++.+||++.-...+ .|-+...+++.++ ..-
T Consensus 422 a~a~qAl~~agl--~-----------------~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gy 482 (763)
T PLN02993 422 GFAIQALLASDL--S-----------------DETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGW 482 (763)
T ss_pred HHHHHHHHHcCC--C-----------------cccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCC
Confidence 678888888862 1 1345678889999988766311 1222222232211 122
Q ss_pred CCcchHHHHHHHHHHHHHHcC----C---hHHHHHHHHHHHHHHHhcccccCCcc--ccCCCCCCccccccc--------
Q 005115 485 GFLDDYAFLISGLLDLYEFGS----G---TKWLVWAIELQNTQDELFLDREGGGY--FNTTGEDPSVLLRVK-------- 547 (714)
Q Consensus 485 ~~l~DyA~li~all~LyeaTg----d---~~~L~~A~~L~~~~~~~F~D~~~Ggf--f~t~~~~~~li~r~k-------- 547 (714)
...||-|..+.|++.|..... + .+-+..|.+..-.|. ++ +||| |+..... . .+...
T Consensus 483 p~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQ----n~-dGG~aafe~~~~~-~-~le~ln~ae~f~~ 555 (763)
T PLN02993 483 QVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQ----SE-NGGVTAWEPVRAY-K-WLELLNPTDFFAN 555 (763)
T ss_pred CcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhc----cC-CCCEEeeeCCCch-h-HHHcCCHHHhhcC
Confidence 456789999998777776543 2 234445544443332 32 4665 4322111 1 11111
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 548 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 548 ~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
...|-..+-..+.++.+|..+.....+...++..+..++.++.+..
T Consensus 556 ~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~ 601 (763)
T PLN02993 556 TMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIES 601 (763)
T ss_pred cccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHH
Confidence 1224556666777777776665533321112233455555665544
No 317
>PRK05949 RNA polymerase sigma factor; Validated
Probab=38.68 E-value=85 Score=34.43 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=38.1
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 328 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 328 ~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++.-.||+..... .+.+++|+.+|++.+.++..+..++++|++
T Consensus 271 er~Vi~lr~gl~~~e~----------------------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGKE----------------------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5678888898864321 357899999999999999999999999987
No 318
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=37.99 E-value=43 Score=25.95 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.8
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHH
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKL 393 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L 393 (714)
+..++|+.+|+++..+...+..++++|
T Consensus 28 s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 28 SYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 467899999999999999999998876
No 319
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=37.60 E-value=90 Score=34.21 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 321 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 321 i~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
|.++|. .+..++..+||+..+. ..++.++++.+|++.+.+.++-.++..||+..
T Consensus 256 l~~~L~~L~eREr~Vl~~rygl~~~~----------------------~~Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~~ 313 (324)
T PRK07921 256 IRSVLATLDEREQQVIRLRFGLDDGQ----------------------PRTLDQIGKLFGLSRERVRQIEREVMSKLRNG 313 (324)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC----------------------CcCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Confidence 455554 2567888889885321 13578999999999999999999999999763
No 320
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.66 E-value=46 Score=32.24 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=22.4
Q ss_pred CChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHHhcCC
Q 005115 17 FLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGG 69 (714)
Q Consensus 17 wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~ 69 (714)
+|.+|+.+ .++|+++=|.+. +|.+..+ .|++.++.+.|.
T Consensus 15 t~~~C~~a----------k~iL~~~~V~~~e~DVs~~~----~~~~EL~~~~g~ 54 (147)
T cd03031 15 TFEDCNNV----------RAILESFRVKFDERDVSMDS----GFREELRELLGA 54 (147)
T ss_pred cChhHHHH----------HHHHHHCCCcEEEEECCCCH----HHHHHHHHHhCC
Confidence 89999884 466766655543 4444443 344444555453
No 321
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=36.41 E-value=96 Score=33.79 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=37.4
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 328 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 328 ~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++.-.||+.... ..+++++++.+|++.+.+.+.+..++.+|++
T Consensus 261 er~Vi~lr~gl~~~~----------------------~~Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 261 QKEVIALRFGLEDGQ----------------------PLTLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred HHHHHHHHhhcCCCC----------------------CcCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456888888885321 1357899999999999999999999999987
No 322
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=35.74 E-value=57 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.3
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 365 LNDSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 365 ~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
..+..++|+.+|++...+.+.|..+-++|.
T Consensus 23 ~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 23 RITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999988875
No 323
>PLN02710 farnesyltranstransferase subunit beta
Probab=34.13 E-value=3.7e+02 Score=30.93 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCCC--hhHHHHHHHhhhhhcccCCCCCCHHHHHHH--HHHHHHHHhCCCcc
Q 005115 148 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPR--PVEIQMMLYHSKKLEDTGKSGEASEGQKMV--LFTLQCMAKGGIHD 223 (714)
Q Consensus 148 ~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~--~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~--~~TL~~m~~GGi~D 223 (714)
++....+.+++.+.+..++. ||||+.|--+. .+++.-+.-.... +++++...+ ...++-+.+ +.+
T Consensus 89 l~~~~~~~ii~~l~~cQ~~d-GGFgg~pg~~~hl~~TY~Av~~L~iL--------g~~~~l~~Idr~~l~~fl~s--~q~ 157 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPN-GGYGGGPGQLPHLATTYAAVNTLVTI--------GGERALSSINREKLYTFLLR--MKD 157 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCC-cCCCCCCCCCccHHHHHHHHHHHHHc--------CCchhhcccCHHHHHHHHHH--cCC
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 291 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggf 291 (714)
. .|||.- ..|.-+|. ...| .+.+-+.......+. ....+++||.+ .+..+|||
T Consensus 158 ~-dGgF~~----~~~gE~D~-R~tY----cAlail~LL~~l~~~----~~e~~~~~I~s-cQ~~dGGF 210 (439)
T PLN02710 158 P-SGGFRM----HDGGEMDV-RACY----TAISVASLLNILDDE----LVKGVGDYILS-CQTYEGGI 210 (439)
T ss_pred C-CCCccc----CCCCCCCc-CCcH----HHHHHHHHhCcCchh----hHHHHHHHHHH-hCCCCCCC
No 324
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=33.97 E-value=88 Score=33.61 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
.|.++|. .+..++...||+.... + .+.+++|+.+|++.+.+...+..++++|+
T Consensus 242 ~L~~~L~~L~~rer~Vi~lr~gl~~~~---------------~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr 298 (298)
T TIGR02997 242 DLESLLAELTPRERQVLRLRFGLDGGE---------------P-------LTLAEIGRRLNLSRERVRQIEAKALRKLR 298 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCC---------------C-------cCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 3555543 3567888889885321 1 35789999999999999999999998873
No 325
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=33.38 E-value=96 Score=35.27 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+|..+|. .+..++.-.|++..+.. .+.+++++.+|++.+.++..+..|+.+|++
T Consensus 343 ~L~~~L~~L~~reR~VI~LRygl~d~~~----------------------~Tl~EIA~~LGvS~erVRqie~rAl~KLR~ 400 (415)
T PRK07598 343 DLQHLLADLTSRERDVIRMRFGLADGHT----------------------YSLAEIGRALDLSRERVRQIESKALQKLRQ 400 (415)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 3555554 24567777888754322 357899999999999999999999999986
Q ss_pred h
Q 005115 396 V 396 (714)
Q Consensus 396 ~ 396 (714)
.
T Consensus 401 ~ 401 (415)
T PRK07598 401 P 401 (415)
T ss_pred h
Confidence 4
No 326
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=32.98 E-value=3.7e+02 Score=33.35 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcC--Ch--HHHHHHHHHHHHHHHhcccccCCccccCCCCC
Q 005115 492 FLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGED 539 (714)
Q Consensus 492 ~li~all~LyeaTg--d~--~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~ 539 (714)
++...++.+...-+ |+ +|.+.+..|.+.+.+..||++.|.||+.....
T Consensus 566 ~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~ 617 (801)
T PF03200_consen 566 FFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHP 617 (801)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeecccc
Confidence 34444444444433 33 35699999999999999999999898865433
No 327
>PLN03009 cellulase
Probab=32.83 E-value=8.6e+02 Score=28.43 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA----------- 483 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~----------- 483 (714)
+..++.|+.++..+++. .+.. ..++.|+.++-..+|+++...+ .|.++|...++....
T Consensus 90 a~s~~~L~w~~~~f~d~-------~~~~--~~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~ 158 (495)
T PLN03009 90 AFTTTMLAWSVIEFGDL-------MPSS--ELRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDT 158 (495)
T ss_pred HHHHHHHHHHHHHhHhh-------CCcc--ccHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCC
Confidence 55556667777666652 1221 2378999999999999976543 578888654331110
Q ss_pred CCCc---------ch-HHHHHHHHHHHHHHcC--ChHH----HHHHHHHHHHHHHhcccccCCccccCCCCCCccccccc
Q 005115 484 PGFL---------DD-YAFLISGLLDLYEFGS--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 547 (714)
Q Consensus 484 ~~~l---------~D-yA~li~all~LyeaTg--d~~~----L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k 547 (714)
.+.+ .| -+.++.+|...+.+.. |+.| |+.|+++++.+... .|.|.+... .. .-..
T Consensus 159 ~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~-~~---~g~~ 229 (495)
T PLN03009 159 PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDD-IK---DGVC 229 (495)
T ss_pred CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCcc-cc---Cccc
Confidence 0100 11 2455556666666544 5554 77888888877642 344432210 00 0000
Q ss_pred cCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005115 548 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEH 586 (714)
Q Consensus 548 ~~~D~a~PS---~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~ 586 (714)
. -.+| -+-.++++-..|+..||+ ..|.+.+..
T Consensus 230 ~----~Y~~~s~~~DE~~WAAawLy~aTgd---~~Yl~~~~~ 264 (495)
T PLN03009 230 P----FYCDFDGYQDELLWGAAWLRRASGD---DSYLNYIEN 264 (495)
T ss_pred c----CcCCcccccHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence 0 1222 245788888889999996 678887754
No 328
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=32.52 E-value=1.2e+02 Score=23.33 Aligned_cols=57 Identities=14% Similarity=-0.092 Sum_probs=35.4
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
+.++|++|++... +.+..+-.|-.+.++..+.+.. .+ ..+++.+..|+.++ +|+.++
T Consensus 5 ~~~~~~~~~~~~~-------~l~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~P~l~~---~~~~~~ 61 (71)
T cd00570 5 YFPGSPRSLRVRL-------ALEEKGLPYELVPVDLGEGEQE--EF----LALNPLGKVPVLED---GGLVLT 61 (71)
T ss_pred eCCCCccHHHHHH-------HHHHcCCCcEEEEeCCCCCCCH--HH----HhcCCCCCCCEEEE---CCEEEE
Confidence 5578999997552 3455566777777776554332 12 33567888996543 255553
No 329
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=32.50 E-value=85 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 426 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~ 426 (714)
+..++|+.+|+++..+...+..+|++|.+.+.. +..+. .=+.-++.++..|.+
T Consensus 126 s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~---~~~~~----~~~~~~~~~f~~a~~ 178 (281)
T TIGR02957 126 PYEEIASIVGKSEANCRQLVSRARRHLDARRPR---FEVSR----EESRQLLERFVEAAQ 178 (281)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC---CCCCh----HHHHHHHHHHHHHHH
Confidence 467999999999999999999999999875432 11121 123556777777765
No 330
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=32.48 E-value=67 Score=37.53 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005115 494 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 537 (714)
Q Consensus 494 i~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~ 537 (714)
...|..+++..|+. .|.++|.++.+.|.+.|||++.|.||+-..
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~ 364 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDL 364 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeC
Confidence 34566777888865 699999999999999999999999987543
No 331
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=31.40 E-value=57 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=34.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCC-CCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p-~g~p~~~ 87 (714)
.+...|++|++... +....+=.|-.+.+|...++++ .+++.+..|..++-+. +|++++.
T Consensus 5 y~~~~~p~c~kv~~-------~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~e 64 (77)
T cd03040 5 YQYKTCPFCCKVRA-------FLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLVD 64 (77)
T ss_pred EEcCCCHHHHHHHH-------HHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEEc
Confidence 34578999999651 3344444565555554332221 2467889998865432 4666654
No 332
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=31.40 E-value=63 Score=38.60 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=45.2
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
.|.++|. .+..++..+||+.... ..++.++++.+|++.+++.++-.++..||+.
T Consensus 549 ~l~~~l~~L~~rE~~Vl~~r~g~~~~~----------------------~~tl~ei~~~lgvs~eRVrQie~~al~kLr~ 606 (619)
T PRK05658 549 ATTDVLASLTPREAKVLRMRFGIDMNT----------------------DHTLEEVGKQFDVTRERIRQIEAKALRKLRH 606 (619)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCC----------------------CccHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 3445553 2567888889984321 1357899999999999999999999999987
Q ss_pred h-hhcCCCCCCC
Q 005115 396 V-RSKRPRPHLD 406 (714)
Q Consensus 396 ~-R~~R~~P~~D 406 (714)
. |.++.+.|+|
T Consensus 607 ~~~~~~l~~~~~ 618 (619)
T PRK05658 607 PSRSRKLRSFLD 618 (619)
T ss_pred hHHHHHHHHHhc
Confidence 5 2333344443
No 333
>PRK09210 RNA polymerase sigma factor RpoD; Validated
Probab=30.72 E-value=1.2e+02 Score=33.67 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=41.5
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
.|.++|. .+..++..+||+..+.. .++.++|+.+|++.+++.++-.++..||+.
T Consensus 298 ~l~~~l~~L~~rEr~Vl~lrygl~~~~~----------------------~tl~EIa~~lgvs~erVrQi~~~Al~kLr~ 355 (367)
T PRK09210 298 QLEDVLDTLTDREENVLRLRFGLDDGRT----------------------RTLEEVGKVFGVTRERIRQIEAKALRKLRH 355 (367)
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCCC----------------------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhC
Confidence 4555554 25678888898853211 357899999999999999999999999986
Q ss_pred h
Q 005115 396 V 396 (714)
Q Consensus 396 ~ 396 (714)
.
T Consensus 356 ~ 356 (367)
T PRK09210 356 P 356 (367)
T ss_pred h
Confidence 4
No 334
>PLN02175 endoglucanase
Probab=29.80 E-value=9.5e+02 Score=28.01 Aligned_cols=124 Identities=11% Similarity=-0.008 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--CCc-------------------chHHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GFL-------------------DDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~--~~l-------------------~DyA~li~all~LyeaTg 505 (714)
+..++..+-..+|+++-.. +..|.+++...++..... +.+ +--+.++.+|...+.+-.
T Consensus 108 ~~~l~~lkw~~Dyllk~~~-~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk 186 (484)
T PLN02175 108 ENARVNIRWATDYLLKCAR-ATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFR 186 (484)
T ss_pred HHHHHHHHHHHHHHHhCcC-CCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 4566666667788886543 335778876443321100 111 122344455555555543
Q ss_pred --ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005115 506 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 579 (714)
Q Consensus 506 --d~~----~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~ 579 (714)
|+. .|+.|+++++.+.+. .|.|.++.... ... +....-+-+-..+++-..|+..||+ ..
T Consensus 187 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~~~~~~------~~~-~Y~s~s~y~DEl~WAAawLY~ATgd---~~ 251 (484)
T PLN02175 187 KVDSKYSRLLLATAKKVMQFAIQY-----RGAYSDSLSSS------VCP-FYCSYSGYKDELMWGASWLLRATND---PY 251 (484)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCCcccCcccc------ccC-ccccCCCccHHHHHHHHHHHHHhCC---HH
Confidence 444 588888888888652 34444331100 000 1100001234688888889999996 67
Q ss_pred HHHHHHH
Q 005115 580 YRQNAEH 586 (714)
Q Consensus 580 y~e~A~~ 586 (714)
|.+.+..
T Consensus 252 Yl~~~~~ 258 (484)
T PLN02175 252 YANFIKS 258 (484)
T ss_pred HHHHHHH
Confidence 8876643
No 335
>PLN02613 endoglucanase
Probab=28.64 E-value=1e+03 Score=27.92 Aligned_cols=119 Identities=13% Similarity=-0.001 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------C----------CCcchHHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------P----------GFLDDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-----------~----------~~l~DyA~li~all~LyeaTg 505 (714)
++.|+.++-..+|+++.... .+.+++...+|.... . .-.+--+.++.+|...+.+-.
T Consensus 112 ~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk 189 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFK 189 (498)
T ss_pred hHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999977543 355655433332100 0 111222345555555555544
Q ss_pred --ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005115 506 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 579 (714)
Q Consensus 506 --d~~----~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~ 579 (714)
|+. .|+.|+++++....+ .|.|.... +.+.+ .-+-.-.++++-..|+..||+ ..
T Consensus 190 ~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~-----------~~y~s-~s~~~DEl~WAAawLy~aTGd---~~ 249 (498)
T PLN02613 190 DVDSSYSSKLLNHARSLFEFADKY-----RGSYQASC-----------PFYCS-YSGYQDELLWAAAWLYKATGE---KK 249 (498)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-cCccchHHHHHHHHHHHHhCC---HH
Confidence 444 588888888888653 22222110 00000 000112467777789999996 67
Q ss_pred HHHHHHHH
Q 005115 580 YRQNAEHS 587 (714)
Q Consensus 580 y~e~A~~~ 587 (714)
|.+.+...
T Consensus 250 Yl~~~~~~ 257 (498)
T PLN02613 250 YLNYVISN 257 (498)
T ss_pred HHHHHHhc
Confidence 88877553
No 336
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=27.41 E-value=1.3e+02 Score=32.12 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 426 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~ 426 (714)
+.+++|+.+|+++..++..|..+|++|.+.+.. ..+ +. .=|.-++.++..|..
T Consensus 133 s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~-~~~--~~----~~~~~~v~~f~~A~~ 185 (293)
T PRK09636 133 PFDEIASTLGRSPAACRQLASRARKHVRAARPR-FPV--SD----EEGAELVEAFFAALA 185 (293)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Cc----hHHHHHHHHHHHHHH
Confidence 467999999999999999999999999986532 111 11 124556677777764
No 337
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=26.42 E-value=1.2e+02 Score=32.53 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005115 366 NDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 426 (714)
Q Consensus 366 ~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~ 426 (714)
.+..++|+.+|+++..+...+..+|++|.+.+. |..+..+ =..-++.++..|..
T Consensus 135 ~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~-~~~~~~~------~~~~~~~~f~~a~~ 188 (290)
T PRK09635 135 LPYQQIATTIGSQASTCRQLAHRARRKINESRI-AASVEPA------QHRVVTRAFIEACS 188 (290)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCC-CCCCChH------HHHHHHHHHHHHHH
Confidence 356799999999999999999999999987543 1112111 12456666666654
No 338
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=26.16 E-value=1e+02 Score=27.19 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005115 244 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 294 (714)
Q Consensus 244 EKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa 294 (714)
+-.+++.++.+.++..+..... .+.+. .++||.+ +++|+|||...
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~~----~~~~~-~~~~L~~-~q~~dGg~~~~ 64 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEPD----RDRAA-AVEWLLS-QQNPDGGWGSN 64 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHHC----HHHHH-HHHHHHH-HB-TTSGBBSS
T ss_pred CCCHHHHHHHHHHHHHhCCccc----HHHHH-HHHHHHH-hCCCCCCccCC
Confidence 5567788888888887555542 22222 5999998 67799999874
No 339
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=25.93 E-value=57 Score=29.11 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=31.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+.++|.+|++.. ++|++ .|.. +|..+.|.-........ +..|-+..-++++.+.++-
T Consensus 4 Y~~~~C~~c~ka~----------~~L~~~~i~~~~--idi~~~~~~~~~l~~~~----~~~~~~~~~li~~~~~~~~ 64 (105)
T cd02977 4 YGNPNCSTSRKAL----------AWLEEHGIEYEF--IDYLKEPPTKEELKELL----AKLGLGVEDLFNTRGTPYR 64 (105)
T ss_pred EECCCCHHHHHHH----------HHHHHcCCCcEE--EeeccCCCCHHHHHHHH----HhcCCCHHHHHhcCCchHH
Confidence 4678999999843 34443 2433 34333333222222222 3345566667777777663
No 340
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=25.43 E-value=68 Score=29.19 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.++|.+|++.. +.|+++ .-...+|..+.|.-.......+ +..|.|..-+++..|+.+
T Consensus 4 Y~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~~~----~~~~~~~~~l~~~~~~~~ 63 (111)
T cd03036 4 YEYPKCSTCRKAK----------KWLDEHGVDYTAIDIVEEPPSKEELKKWL----EKSGLPLKKFFNTSGKSY 63 (111)
T ss_pred EECCCCHHHHHHH----------HHHHHcCCceEEecccCCcccHHHHHHHH----HHcCCCHHHHHhcCCchH
Confidence 3578999999943 455443 2233345443332222121222 334567777777666533
No 341
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=25.34 E-value=1.7e+02 Score=31.82 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhc--CCCCCCCcchhhchHHHHHHHHHHHH
Q 005115 366 NDSSASASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARAS 425 (714)
Q Consensus 366 ~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~--R~~P~~DdKilt~WNal~I~aLa~a~ 425 (714)
.+..++|+.+|+++..++..|..+|++|.+.|.+ +..|..+.. =|--++.++..|.
T Consensus 170 ~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~----~~~~~v~~~~~A~ 227 (339)
T PRK08241 170 WSAAEVAELLDTSVAAVNSALQRARATLAERGPSAADTLREPDDP----EERALLARYVAAF 227 (339)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCCcccccCCCCCh----HHHHHHHHHHHHH
Confidence 3568999999999999999999999999884321 122444444 2444555555554
No 342
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=24.49 E-value=2.9e+02 Score=28.71 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005115 204 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 283 (714)
Q Consensus 204 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~ 283 (714)
++.+.+...++.+.. +-.-+|||.-|... . +--.+.-|..+.++.++-+.. +.-..+..++++||.+.
T Consensus 46 ~~~~~i~~~~~~l~~---~Q~~dGgf~~w~~~------~-~~~~~~Ta~~~~~L~~a~~~~--~v~~~~i~ra~~~L~~~ 113 (282)
T cd02891 46 KALEYIRKGYQRLLT---YQRSDGSFSAWGNS------D-SGSTWLTAYVVKFLSQARKYI--DVDENVLARALGWLVPQ 113 (282)
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCccccCCC------C-CCchHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhc
Confidence 566666666666655 23467888633221 1 334577888999999887755 23347889999999986
Q ss_pred ccCCCCceee
Q 005115 284 MIGPGGEIFS 293 (714)
Q Consensus 284 m~~p~Ggfys 293 (714)
+.++|+|..
T Consensus 114 -q~~~g~~~~ 122 (282)
T cd02891 114 -QKEDGSFRE 122 (282)
T ss_pred -cCCCCCcCC
Confidence 667888754
No 343
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=24.08 E-value=34 Score=31.46 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred HHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 32 EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 32 ~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
||+.+.+...|-..-|+++..+.+...| |...||..||+- +|+++.
T Consensus 51 PEL~~af~~~~~~avv~~~~e~~L~~r~--------gv~~~PaLvf~R-~g~~lG 96 (107)
T PF07449_consen 51 PELVKAFPGRFRGAVVARAAERALAARF--------GVRRWPALVFFR-DGRYLG 96 (107)
T ss_dssp HHHHCTSTTSEEEEEEEHHHHHHHHHHH--------T-TSSSEEEEEE-TTEEEE
T ss_pred HHHHHhhhCccceEEECchhHHHHHHHh--------CCccCCeEEEEE-CCEEEE
Confidence 5566666677777777776666777777 899999999998 567763
No 344
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
Probab=23.86 E-value=2e+02 Score=31.86 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=37.1
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 328 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 328 ~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
+..++...||+. .+. ..+++++++.+|++.++++++..++..||+
T Consensus 284 E~~Vi~~R~gl~-~~~---------------------~~TLeevg~~~~isrERvRQIE~kAl~KLr 328 (342)
T COG0568 284 ERRVIRLRFGLD-DGE---------------------PKTLEELGEEFGISRERVRQIEAKALRKLR 328 (342)
T ss_pred HHHHHHHHhccC-CCC---------------------cchHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 467888888887 221 246789999999999999999999999998
No 345
>PRK07406 RNA polymerase sigma factor RpoD; Validated
Probab=23.83 E-value=1.9e+02 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=27.3
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++|+.+|++.+.+.++...+++||+..
T Consensus 333 Tl~EIA~~lgiS~eRVRQie~rAL~KLR~~ 362 (373)
T PRK07406 333 TLEEIGQIFNVTRERIRQIEAKALRKLRHP 362 (373)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHhch
Confidence 578999999999999999999999999863
No 346
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=23.45 E-value=1.2e+02 Score=29.95 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=31.4
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCC
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRP 403 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P 403 (714)
+.+++|+.+|+++..+...|..+|++|.+.-..+..|
T Consensus 129 s~~EIA~~Lgis~~tV~~~l~RAr~~Lr~~l~~~~~~ 165 (182)
T PRK12540 129 SYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDGAE 165 (182)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4679999999999999999999999998876655544
No 347
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.56 E-value=1.8e+02 Score=24.16 Aligned_cols=60 Identities=12% Similarity=-0.065 Sum_probs=31.2
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
+.++|++|++-. . +.+.++=.|-.+.|+..+ .- ......+++.+..|+.+ ...+|..++.
T Consensus 6 ~~~~sp~~~kv~-~------~L~~~gi~y~~~~v~~~~--~~----~~~~~~~~p~~~vP~l~-~~~~~~~l~e 65 (77)
T cd03041 6 EFEGSPFCRLVR-E------VLTELELDVILYPCPKGS--PK----RDKFLEKGGKVQVPYLV-DPNTGVQMFE 65 (77)
T ss_pred cCCCCchHHHHH-H------HHHHcCCcEEEEECCCCh--HH----HHHHHHhCCCCcccEEE-eCCCCeEEEc
Confidence 457999999722 1 233333345555443221 11 11223567889999764 2334566654
No 348
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=1e+03 Score=26.27 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcc
Q 005115 453 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 532 (714)
Q Consensus 453 A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggf 532 (714)
-+++..||.++... .|+| +|++ ++ +.|-.+.-+.+-.|.-++ ...|. .-++|.++++..- ++..|||
T Consensus 225 ~E~l~~Wl~~RQ~s--sgGl-----~GR~--nK-l~D~CYs~WvlsSl~il~-~~~~i-n~e~L~~yiL~c~-q~~sGGf 291 (342)
T COG5029 225 VEKLIRWLAERQLS--SGGL-----NGRS--NK-LVDTCYSFWVLSSLAILG-KLDFI-NTEELTDYILDCQ-QETSGGF 291 (342)
T ss_pred HHHHHHHHHHcccc--cCCc-----CCCc--cc-CccchhhhhhcchHHhcc-hhhhc-CHHHHHHHHHhhc-ccCCCCC
Confidence 56788888776654 3555 3443 22 344333333333333333 12222 3467888888776 5668999
Q ss_pred ccCCCCCCcc
Q 005115 533 FNTTGEDPSV 542 (714)
Q Consensus 533 f~t~~~~~~l 542 (714)
-+.+.+.+++
T Consensus 292 sdrp~~~~D~ 301 (342)
T COG5029 292 SDRPGEEPDV 301 (342)
T ss_pred CCCCcccchH
Confidence 9987665443
No 349
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.42 E-value=1.9e+02 Score=27.65 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=40.7
Q ss_pred CCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 16 HFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 16 ~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
+|=.-|-.|++-.+ .+++.+.+-.+-.-||.+|-|+..+.| ... -|.+|+.==.++.+
T Consensus 30 d~d~~Cm~mDeiL~---~~a~~v~~~a~IY~vDi~~Vpdfn~~y--------el~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 30 DWDPVCMQMDEILY---KIAEKVKNFAVIYLVDIDEVPDFNQMY--------ELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp TTSHHHHHHHHHHH---HHHHHHTTTEEEEEEETTTTHCCHHHT--------TS--SSEEEEEEETTEEE
T ss_pred CCCccHHHHHHHHH---HHHHHhhcceEEEEEEcccchhhhccc--------ccC-CCeEEEEEecCeEE
Confidence 66788999996544 356666544455569999999998888 323 79988775455555
No 350
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=20.35 E-value=67 Score=29.76 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=10.4
Q ss_pred CCCCChhhHhhhh
Q 005115 14 RTHFLIKCHVMEV 26 (714)
Q Consensus 14 ~t~wC~wC~~M~~ 26 (714)
.-.+|+||+.|..
T Consensus 13 ~D~~Cp~C~~~~~ 25 (154)
T cd03023 13 FDYNCGYCKKLAP 25 (154)
T ss_pred ECCCChhHHHhhH
Confidence 3469999999974
No 351
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=20.13 E-value=1.3e+02 Score=28.58 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=27.5
Q ss_pred CCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 366 NDSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 366 ~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
.+..++|+.+|+++..+...|..+|++|++.
T Consensus 123 ~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~ 153 (160)
T PRK09642 123 KSYQEIALQEKIEVKTVEMKLYRARKWIKKH 153 (160)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999764
No 352
>PLN02567 alpha,alpha-trehalase
Probab=20.11 E-value=1.5e+02 Score=34.97 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005115 496 GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 537 (714)
Q Consensus 496 all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~ 537 (714)
.|..+++..|++ +|.++|..+.+.|.+.+||++.|.||+..-
T Consensus 340 ~LA~la~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl 385 (554)
T PLN02567 340 DIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEMGQWLDYWL 385 (554)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeecc
Confidence 356667777765 588899999999999999999999988753
No 353
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=20.03 E-value=1.3e+02 Score=30.68 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=27.8
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 365 LNDSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 365 ~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
..+..++|+++|++...+.+.|..|.+||..
T Consensus 178 ~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~ 208 (215)
T COG3413 178 RVSLKDLAKELGISKSTLSEHLRRAERKLIE 208 (215)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999876
No 354
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=20.02 E-value=77 Score=27.02 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=36.6
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHH-HhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeC
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKL-LNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~-ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~ 79 (714)
.++-||-|..+... +.++ .+..|.-..||.++.|.+-..| |. -.|...+-.
T Consensus 6 ~k~~C~LC~~a~~~------L~~~~~~~~~~l~~vDI~~d~~l~~~Y--------~~-~IPVl~~~~ 57 (81)
T PF05768_consen 6 TKPGCHLCDEAKEI------LEEVAAEFPFELEEVDIDEDPELFEKY--------GY-RIPVLHIDG 57 (81)
T ss_dssp E-SSSHHHHHHHHH------HHHCCTTSTCEEEEEETTTTHHHHHHS--------CT-STSEEEETT
T ss_pred cCCCCChHHHHHHH------HHHHHhhcCceEEEEECCCCHHHHHHh--------cC-CCCEEEEcC
Confidence 46789999998744 4443 3566888889999999988888 32 478755544
Done!