Query 005115
Match_columns 714
No_of_seqs 347 out of 1495
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fp3_A N-acyl-D-glucosamine 2- 100.0 4.5E-35 1.5E-39 322.7 21.1 335 153-566 19-391 (402)
2 2gz6_A N-acetyl-D-glucosamine 100.0 1E-34 3.5E-39 317.8 21.3 245 219-593 26-272 (388)
3 2zbl_A Putative isomerase; N-a 100.0 1E-32 3.5E-37 306.5 24.7 305 153-598 17-355 (421)
4 3ira_A Conserved protein; meth 100.0 7.8E-31 2.7E-35 257.2 11.9 124 13-136 46-169 (173)
5 3gt5_A N-acetylglucosamine 2-e 99.9 4.1E-25 1.4E-29 243.9 22.7 260 207-593 13-282 (402)
6 1fp3_A N-acyl-D-glucosamine 2- 99.9 2.5E-23 8.6E-28 229.0 25.5 309 205-595 15-350 (402)
7 2zzr_A Unsaturated glucuronyl 99.9 2.8E-22 9.7E-27 219.8 23.1 256 183-595 74-346 (397)
8 3gt5_A N-acetylglucosamine 2-e 99.9 1.1E-21 3.6E-26 216.6 25.0 308 153-598 15-349 (402)
9 2gz6_A N-acetyl-D-glucosamine 99.9 2.6E-21 8.9E-26 211.5 25.8 340 151-566 15-381 (388)
10 2zbl_A Putative isomerase; N-a 99.9 1E-21 3.6E-26 217.9 22.3 246 221-595 27-289 (421)
11 2ahf_A Unsaturated glucuronyl 99.9 1.3E-20 4.4E-25 205.7 21.2 256 183-595 48-321 (377)
12 3k7x_A LIN0763 protein; Q92DQ0 99.8 1.1E-16 3.8E-21 173.3 27.3 240 182-590 51-297 (349)
13 2dlx_A UBX domain-containing p 99.6 9.9E-16 3.4E-20 147.0 7.0 85 13-109 49-134 (153)
14 3h7l_A Endoglucanase; dehydrog 99.6 2.8E-14 9.7E-19 162.4 16.9 147 413-593 251-397 (586)
15 3ph9_A Anterior gradient prote 99.4 1E-13 3.6E-18 132.7 7.6 94 13-115 51-146 (151)
16 3k7x_A LIN0763 protein; Q92DQ0 99.4 2.4E-12 8.3E-17 139.3 14.8 141 412-596 46-187 (349)
17 3pmm_A Putative cytoplasmic pr 99.3 1.7E-11 5.8E-16 134.3 17.3 177 375-596 20-207 (382)
18 3f9u_A Putative exported cytoc 99.3 2.3E-12 8E-17 124.2 7.9 97 13-115 54-170 (172)
19 2ahf_A Unsaturated glucuronyl 99.3 1.7E-10 5.8E-15 125.9 21.9 250 202-570 106-366 (377)
20 2zzr_A Unsaturated glucuronyl 99.3 1.3E-10 4.3E-15 127.6 19.0 210 202-526 132-348 (397)
21 3k11_A Putative glycosyl hydro 99.2 3.4E-11 1.2E-15 133.7 13.0 186 377-595 27-240 (445)
22 1nc5_A Hypothetical protein YT 99.2 6.6E-10 2.2E-14 121.2 21.4 258 178-594 42-314 (373)
23 3pmm_A Putative cytoplasmic pr 99.2 8E-10 2.7E-14 121.0 20.3 149 415-595 173-333 (382)
24 1nc5_A Hypothetical protein YT 99.1 2.1E-10 7.1E-15 125.2 13.5 142 410-596 36-180 (373)
25 3k11_A Putative glycosyl hydro 99.1 1E-09 3.5E-14 121.9 19.1 269 177-595 82-365 (445)
26 3fk8_A Disulphide isomerase; A 99.0 1.7E-10 5.8E-15 106.0 5.5 88 13-109 36-131 (133)
27 2ju5_A Thioredoxin disulfide i 98.9 6.3E-10 2.1E-14 105.7 6.3 78 13-91 54-136 (154)
28 3dml_A Putative uncharacterize 98.9 3.1E-10 1.1E-14 103.7 2.5 83 13-111 25-110 (116)
29 2kuc_A Putative disulphide-iso 98.9 1E-09 3.5E-14 100.0 5.6 67 13-87 34-102 (130)
30 2fwh_A Thiol:disulfide interch 98.9 1E-09 3.5E-14 101.5 4.3 81 13-108 38-125 (134)
31 2lst_A Thioredoxin; structural 98.2 7.8E-10 2.7E-14 101.0 0.0 64 13-84 26-92 (130)
32 3hxs_A Thioredoxin, TRXP; elec 98.6 2.7E-08 9.2E-13 92.0 5.5 69 13-92 58-126 (141)
33 2l5l_A Thioredoxin; structural 98.6 3.5E-08 1.2E-12 91.2 6.2 63 12-85 44-106 (136)
34 2l57_A Uncharacterized protein 98.6 2.7E-08 9.1E-13 90.3 4.5 64 13-87 33-98 (126)
35 1dby_A Chloroplast thioredoxin 98.5 1E-07 3.5E-12 83.3 6.4 63 13-87 26-88 (107)
36 2trx_A Thioredoxin; electron t 98.5 8.4E-08 2.9E-12 84.0 5.7 63 13-87 27-89 (108)
37 2voc_A Thioredoxin; electron t 98.5 8.6E-08 2.9E-12 85.3 5.2 63 13-87 24-86 (112)
38 1nsw_A Thioredoxin, TRX; therm 98.5 5.1E-08 1.7E-12 85.0 3.0 63 13-87 24-86 (105)
39 2i4a_A Thioredoxin; acidophIle 98.5 1.1E-07 3.8E-12 82.9 5.1 63 13-87 27-89 (107)
40 2ec4_A FAS-associated factor 1 98.5 1.5E-07 5E-12 92.3 6.2 95 14-114 63-171 (178)
41 2dml_A Protein disulfide-isome 98.5 2.5E-07 8.5E-12 84.0 7.4 60 13-83 42-101 (130)
42 3zzx_A Thioredoxin; oxidoreduc 98.4 1.1E-07 3.7E-12 84.8 4.5 62 13-87 27-88 (105)
43 3tco_A Thioredoxin (TRXA-1); d 98.4 1.8E-07 6E-12 81.7 5.2 63 13-87 28-90 (109)
44 3gnj_A Thioredoxin domain prot 98.4 1.9E-07 6.7E-12 82.0 5.5 63 13-87 29-91 (111)
45 3ul3_B Thioredoxin, thioredoxi 98.4 1.1E-07 3.9E-12 86.7 3.9 63 13-87 49-111 (128)
46 1fb6_A Thioredoxin M; electron 98.4 2E-07 6.7E-12 80.9 5.3 63 13-87 25-87 (105)
47 1w4v_A Thioredoxin, mitochondr 98.4 2.3E-07 8E-12 83.5 5.2 63 13-87 38-100 (119)
48 1oaz_A Thioredoxin 1; immune s 98.4 4E-08 1.4E-12 89.7 0.0 66 13-87 28-104 (123)
49 1nho_A Probable thioredoxin; b 98.4 2.6E-07 8.8E-12 77.2 4.9 58 13-84 8-65 (85)
50 2o8v_B Thioredoxin 1; disulfid 98.4 1.7E-07 5.9E-12 85.9 4.2 63 13-87 47-109 (128)
51 1ep7_A Thioredoxin CH1, H-type 98.4 3E-07 1E-11 81.0 5.5 63 13-87 31-93 (112)
52 3die_A Thioredoxin, TRX; elect 98.4 2.1E-07 7.3E-12 80.9 4.2 63 13-87 26-88 (106)
53 1t00_A Thioredoxin, TRX; redox 98.4 2.6E-07 8.9E-12 81.5 4.7 63 13-87 30-92 (112)
54 2yzu_A Thioredoxin; redox prot 98.4 2.2E-07 7.5E-12 80.9 4.1 63 13-87 25-87 (109)
55 1thx_A Thioredoxin, thioredoxi 98.4 3.4E-07 1.2E-11 80.8 5.4 63 13-87 32-94 (115)
56 3h7l_A Endoglucanase; dehydrog 98.3 1.3E-05 4.4E-10 91.6 19.2 184 203-522 190-397 (586)
57 3hz4_A Thioredoxin; NYSGXRC, P 98.3 8.5E-07 2.9E-11 82.3 7.6 63 13-87 31-93 (140)
58 1x5d_A Protein disulfide-isome 98.3 6E-07 2.1E-11 81.6 6.4 61 13-85 32-96 (133)
59 3aps_A DNAJ homolog subfamily 98.3 3.5E-07 1.2E-11 82.1 4.8 62 12-84 27-88 (122)
60 2dj3_A Protein disulfide-isome 98.3 6.7E-07 2.3E-11 81.5 6.5 60 13-83 32-93 (133)
61 2dj1_A Protein disulfide-isome 98.3 5.6E-07 1.9E-11 82.8 6.0 60 13-84 41-103 (140)
62 3d6i_A Monothiol glutaredoxin- 98.3 4.1E-07 1.4E-11 80.4 4.7 63 13-87 28-91 (112)
63 3qfa_C Thioredoxin; protein-pr 98.3 4.1E-07 1.4E-11 81.6 4.4 62 13-87 38-99 (116)
64 1fo5_A Thioredoxin; disulfide 98.3 3.8E-07 1.3E-11 76.2 3.9 58 13-84 9-66 (85)
65 1ti3_A Thioredoxin H, PTTRXH1; 98.3 8E-07 2.7E-11 78.2 6.2 79 13-110 33-111 (113)
66 3f3q_A Thioredoxin-1; His TAG, 98.3 5.2E-07 1.8E-11 79.9 4.9 62 13-87 31-92 (109)
67 1x5e_A Thioredoxin domain cont 98.3 5.8E-07 2E-11 81.4 5.2 62 12-85 28-90 (126)
68 4euy_A Uncharacterized protein 98.3 2.3E-07 7.8E-12 81.4 2.4 62 13-87 25-86 (105)
69 1gh2_A Thioredoxin-like protei 98.3 6.2E-07 2.1E-11 78.6 4.8 61 13-86 28-88 (107)
70 3p2a_A Thioredoxin 2, putative 98.3 8E-07 2.7E-11 83.0 5.7 62 13-86 62-123 (148)
71 1xwb_A Thioredoxin; dimerizati 98.2 6.1E-07 2.1E-11 77.9 4.5 63 13-87 27-89 (106)
72 2ppt_A Thioredoxin-2; thiredox 98.2 7.9E-07 2.7E-11 84.5 5.6 63 12-86 70-132 (155)
73 2e0q_A Thioredoxin; electron t 98.2 8.6E-07 2.9E-11 76.3 5.1 62 13-87 23-84 (104)
74 3m9j_A Thioredoxin; oxidoreduc 98.2 8E-07 2.7E-11 77.2 4.8 62 13-87 27-88 (105)
75 2f51_A Thioredoxin; electron t 98.2 5.2E-07 1.8E-11 81.3 3.6 63 13-87 30-95 (118)
76 2i1u_A Thioredoxin, TRX, MPT46 98.2 3.9E-07 1.3E-11 81.4 2.5 63 13-87 37-99 (121)
77 3qou_A Protein YBBN; thioredox 98.2 9E-07 3.1E-11 91.8 5.4 63 12-86 32-94 (287)
78 2av4_A Thioredoxin-like protei 98.2 9.4E-07 3.2E-11 84.6 4.9 61 13-85 48-108 (160)
79 1ilo_A Conserved hypothetical 98.2 1E-06 3.6E-11 72.4 4.5 62 12-91 5-66 (77)
80 2pu9_C TRX-F, thioredoxin F-ty 98.2 1.4E-06 4.9E-11 76.8 5.7 61 13-86 31-92 (111)
81 1sen_A Thioredoxin-like protei 98.2 1.6E-06 5.5E-11 83.1 6.5 65 13-87 53-119 (164)
82 2l6c_A Thioredoxin; oxidoreduc 98.2 4.6E-07 1.6E-11 80.5 2.4 68 13-93 26-94 (110)
83 3gix_A Thioredoxin-like protei 98.2 1.8E-06 6.2E-11 81.5 6.5 61 13-85 30-90 (149)
84 1xfl_A Thioredoxin H1; AT3G510 98.2 1.1E-06 3.8E-11 79.9 4.6 62 13-87 45-106 (124)
85 2wz9_A Glutaredoxin-3; protein 98.2 1.2E-06 4.1E-11 82.6 4.9 61 13-86 39-99 (153)
86 2vlu_A Thioredoxin, thioredoxi 98.2 1.3E-06 4.4E-11 78.4 4.8 61 13-86 41-101 (122)
87 2j23_A Thioredoxin; immune pro 98.2 8.9E-07 3.1E-11 79.9 3.8 63 13-87 40-103 (121)
88 1qgv_A Spliceosomal protein U5 98.2 1.9E-06 6.5E-11 80.7 6.2 63 12-86 29-91 (142)
89 3apq_A DNAJ homolog subfamily 98.2 1.9E-06 6.6E-11 85.5 6.6 62 13-86 121-182 (210)
90 2xc2_A Thioredoxinn; oxidoredu 98.1 1.6E-06 5.6E-11 77.3 5.0 59 13-86 40-99 (117)
91 1v98_A Thioredoxin; oxidoreduc 98.1 1.7E-06 5.8E-11 79.9 5.1 62 13-86 57-118 (140)
92 1r26_A Thioredoxin; redox-acti 98.1 1.8E-06 6.2E-11 78.9 5.1 61 13-86 44-104 (125)
93 3d22_A TRXH4, thioredoxin H-ty 98.1 1.6E-06 5.3E-11 79.9 4.6 62 13-87 53-114 (139)
94 1wmj_A Thioredoxin H-type; str 98.1 2.4E-06 8.4E-11 77.1 5.6 63 12-87 42-104 (130)
95 2vm1_A Thioredoxin, thioredoxi 98.1 1.9E-06 6.5E-11 76.4 4.8 61 13-86 35-95 (118)
96 1mek_A Protein disulfide isome 98.1 2.8E-06 9.6E-11 75.1 5.7 61 13-85 31-94 (120)
97 3cxg_A Putative thioredoxin; m 98.1 1.1E-06 3.9E-11 81.0 3.2 61 12-86 46-110 (133)
98 2oe3_A Thioredoxin-3; electron 98.1 1.4E-06 4.8E-11 78.0 3.5 61 13-86 37-97 (114)
99 2yj7_A LPBCA thioredoxin; oxid 97.4 4.3E-07 1.5E-11 78.5 0.0 63 13-87 26-88 (106)
100 2vim_A Thioredoxin, TRX; thior 98.1 2.8E-06 9.5E-11 73.4 5.1 62 13-87 26-87 (104)
101 1faa_A Thioredoxin F; electron 98.1 3.2E-06 1.1E-10 76.1 5.4 62 13-87 44-106 (124)
102 3uvt_A Thioredoxin domain-cont 98.0 3.4E-06 1.2E-10 73.7 5.0 59 13-86 28-92 (111)
103 3h79_A Thioredoxin-like protei 98.0 4.9E-06 1.7E-10 75.4 6.1 60 13-83 40-104 (127)
104 2dj0_A Thioredoxin-related tra 98.0 3.5E-06 1.2E-10 77.6 5.1 71 12-94 32-110 (137)
105 2djj_A PDI, protein disulfide- 98.0 3.7E-06 1.3E-10 75.0 5.1 57 13-83 32-93 (121)
106 1syr_A Thioredoxin; SGPP, stru 98.0 2.4E-06 8.3E-11 75.7 3.8 62 13-87 33-94 (112)
107 3dxb_A Thioredoxin N-terminall 98.0 3.4E-06 1.2E-10 84.6 4.8 62 13-86 37-98 (222)
108 3emx_A Thioredoxin; structural 97.9 2.1E-06 7.2E-11 79.2 1.3 65 13-92 38-113 (135)
109 2b1k_A Thiol:disulfide interch 97.9 1E-05 3.4E-10 76.7 5.6 61 13-87 58-141 (168)
110 3hcz_A Possible thiol-disulfid 97.9 1.4E-05 4.6E-10 73.4 6.3 89 13-112 38-144 (148)
111 1zma_A Bacterocin transport ac 97.9 2.1E-06 7.2E-11 76.8 0.8 67 12-86 35-101 (118)
112 1ttz_A Conserved hypothetical 97.9 9.4E-06 3.2E-10 70.0 4.8 55 13-86 6-60 (87)
113 1z6n_A Hypothetical protein PA 97.9 6.1E-06 2.1E-10 79.8 3.8 88 12-115 60-147 (167)
114 3gzk_A Cellulase; fold from GH 97.9 8.5E-05 2.9E-09 84.6 13.7 90 411-518 242-334 (537)
115 2qsi_A Putative hydrogenase ex 97.9 9.2E-06 3.1E-10 76.1 4.7 70 12-93 39-111 (137)
116 4evm_A Thioredoxin family prot 97.9 8.4E-06 2.9E-10 73.1 4.1 72 13-87 29-120 (138)
117 1a8l_A Protein disulfide oxido 97.8 1.2E-05 4.3E-10 79.9 4.8 62 13-86 141-206 (226)
118 2b5x_A YKUV protein, TRXY; thi 97.8 2.9E-05 1E-09 71.0 6.9 64 13-87 36-126 (148)
119 3e6u_A LANC-like protein 1; al 97.8 0.00053 1.8E-08 75.5 18.1 274 247-591 73-367 (411)
120 2lja_A Putative thiol-disulfid 97.8 3.4E-05 1.2E-09 71.4 7.3 72 13-87 37-124 (152)
121 1ks8_A Endo-B-1,4-glucanase; c 97.8 0.00013 4.5E-09 80.9 13.0 241 224-601 47-294 (433)
122 1ia6_A Cellulase CEL9M; cellul 97.8 0.00034 1.2E-08 77.8 16.2 182 224-517 49-237 (441)
123 3ewl_A Uncharacterized conserv 97.8 1.3E-05 4.6E-10 73.3 4.2 75 13-87 34-125 (142)
124 3idv_A Protein disulfide-isome 97.8 1.8E-05 6.3E-10 79.1 5.5 62 12-85 38-102 (241)
125 1lu4_A Soluble secreted antige 97.8 2E-05 6.7E-10 71.2 5.0 69 13-85 31-113 (136)
126 2k8s_A Thioredoxin; dimer, str 97.8 1E-05 3.6E-10 67.6 2.7 59 13-88 7-69 (80)
127 1zzo_A RV1677; thioredoxin fol 97.7 3.6E-05 1.2E-09 69.2 6.1 61 13-85 32-115 (136)
128 3or5_A Thiol:disulfide interch 97.7 5.7E-05 1.9E-09 70.7 7.3 72 13-87 41-132 (165)
129 3gl3_A Putative thiol:disulfid 97.7 7.6E-05 2.6E-09 68.9 7.7 77 13-92 35-127 (152)
130 3erw_A Sporulation thiol-disul 97.7 2.3E-05 7.8E-10 71.4 3.8 64 13-87 41-130 (145)
131 2f9s_A Thiol-disulfide oxidore 97.7 4.5E-05 1.5E-09 70.7 5.8 72 13-87 33-119 (151)
132 2qgv_A Hydrogenase-1 operon pr 97.6 1.3E-05 4.4E-10 75.4 1.9 68 13-92 41-112 (140)
133 3q6o_A Sulfhydryl oxidase 1; p 97.6 5.4E-05 1.8E-09 76.7 6.6 61 12-83 36-101 (244)
134 3raz_A Thioredoxin-related pro 97.6 5.4E-05 1.8E-09 70.3 5.8 71 13-87 31-121 (151)
135 3kcm_A Thioredoxin family prot 97.6 7.4E-05 2.5E-09 69.2 6.6 90 13-109 35-141 (154)
136 2lrn_A Thiol:disulfide interch 97.6 7E-05 2.4E-09 69.6 6.4 72 13-87 36-125 (152)
137 3hdc_A Thioredoxin family prot 97.6 7.2E-05 2.5E-09 70.1 6.5 71 13-94 48-139 (158)
138 2h30_A Thioredoxin, peptide me 97.6 1.7E-05 5.8E-10 74.4 2.0 67 13-87 45-137 (164)
139 3idv_A Protein disulfide-isome 97.6 5.2E-05 1.8E-09 75.8 5.6 62 13-86 154-218 (241)
140 3eur_A Uncharacterized protein 97.6 4.2E-05 1.4E-09 70.3 4.4 76 13-88 38-130 (142)
141 2e7p_A Glutaredoxin; thioredox 97.6 3.9E-05 1.3E-09 68.2 4.0 57 13-87 25-86 (116)
142 3kp8_A Vkorc1/thioredoxin doma 97.6 3.6E-05 1.2E-09 68.5 3.7 57 12-86 18-78 (106)
143 1wou_A Thioredoxin -related pr 97.6 5E-05 1.7E-09 68.7 4.5 59 17-87 42-107 (123)
144 1kng_A Thiol:disulfide interch 97.6 6.3E-05 2.2E-09 69.7 5.2 68 13-87 49-133 (156)
145 3kh7_A Thiol:disulfide interch 97.5 7.3E-05 2.5E-09 71.9 5.6 69 13-87 65-148 (176)
146 3fkf_A Thiol-disulfide oxidore 97.5 6.4E-05 2.2E-09 68.8 4.8 73 13-88 40-131 (148)
147 2ywm_A Glutaredoxin-like prote 97.5 5.8E-05 2E-09 75.4 4.6 58 12-84 142-199 (229)
148 2es7_A Q8ZP25_salty, putative 97.5 2.3E-05 8E-10 73.5 1.6 61 14-87 42-106 (142)
149 1clc_A Endoglucanase CELD; EC: 97.5 0.0011 3.9E-08 76.8 15.3 91 411-519 286-379 (639)
150 2hls_A Protein disulfide oxido 97.5 0.00015 5.2E-09 73.9 7.1 62 12-87 144-209 (243)
151 2r2j_A Thioredoxin domain-cont 97.4 8.3E-05 2.8E-09 80.7 5.2 61 13-85 29-95 (382)
152 3ha9_A Uncharacterized thiored 97.4 0.0001 3.5E-09 69.4 4.6 72 13-91 44-149 (165)
153 1i5g_A Tryparedoxin II; electr 97.4 0.00013 4.6E-09 66.9 5.0 71 13-87 35-125 (144)
154 3ia1_A THIO-disulfide isomeras 97.4 7.3E-05 2.5E-09 69.4 3.2 72 13-87 37-125 (154)
155 3s9f_A Tryparedoxin; thioredox 97.4 0.00018 6.1E-09 68.5 5.7 72 13-87 55-145 (165)
156 2l5o_A Putative thioredoxin; s 97.3 0.00016 5.3E-09 66.9 5.0 64 13-87 35-122 (153)
157 2dbc_A PDCL2, unnamed protein 97.3 0.00013 4.5E-09 67.2 4.4 59 13-87 37-95 (135)
158 1tf4_A T. fusca endo/EXO-cellu 97.3 0.0024 8.3E-08 73.6 15.8 86 413-517 152-240 (605)
159 1sji_A Calsequestrin 2, calseq 97.3 7.7E-05 2.6E-09 79.9 3.1 61 13-85 35-102 (350)
160 3f8u_A Protein disulfide-isome 97.3 0.00012 4.1E-09 81.5 4.8 59 13-83 377-437 (481)
161 2ls5_A Uncharacterized protein 96.4 3.2E-05 1.1E-09 72.4 0.0 92 13-111 40-148 (159)
162 2lus_A Thioredoxion; CR-Trp16, 96.4 3.2E-05 1.1E-09 70.6 0.0 74 12-89 32-126 (143)
163 2b5e_A Protein disulfide-isome 97.3 0.00019 6.3E-09 80.7 6.1 61 12-84 37-98 (504)
164 3ga4_A Dolichyl-diphosphooligo 97.3 0.00026 8.9E-09 69.1 6.2 59 16-85 54-117 (178)
165 1o73_A Tryparedoxin; electron 97.3 0.00024 8.2E-09 65.0 5.6 71 13-87 35-125 (144)
166 1o8x_A Tryparedoxin, TRYX, TXN 97.3 0.0002 6.9E-09 66.0 5.0 71 13-87 35-125 (146)
167 3lor_A Thiol-disulfide isomera 97.3 0.00026 8.8E-09 65.9 5.8 20 68-87 117-136 (160)
168 2fgx_A Putative thioredoxin; N 97.2 0.0002 7E-09 64.1 4.4 61 12-87 34-94 (107)
169 3t58_A Sulfhydryl oxidase 1; o 97.2 0.00042 1.4E-08 78.6 7.7 63 12-85 36-106 (519)
170 3ed3_A Protein disulfide-isome 97.2 0.00028 9.4E-09 74.3 5.4 60 12-82 41-102 (298)
171 3eyt_A Uncharacterized protein 97.2 0.00032 1.1E-08 65.2 5.1 20 68-87 114-133 (158)
172 3f8u_A Protein disulfide-isome 97.2 0.00021 7.2E-09 79.6 4.5 61 13-85 28-88 (481)
173 3lwa_A Secreted thiol-disulfid 97.2 0.00047 1.6E-08 66.1 6.3 72 13-87 66-162 (183)
174 2lrt_A Uncharacterized protein 97.2 0.00081 2.8E-08 62.8 7.8 72 13-87 42-129 (152)
175 2b5e_A Protein disulfide-isome 97.1 0.00057 2E-08 76.6 7.6 58 13-84 383-443 (504)
176 2v8i_A Pectate lyase; periplas 97.1 0.11 3.8E-06 56.8 24.6 129 447-594 316-461 (543)
177 1g87_A Endocellulase 9G; endog 97.1 0.015 5E-07 67.2 18.6 183 224-516 48-237 (614)
178 3qcp_A QSOX from trypanosoma b 97.0 0.00029 1E-08 78.6 4.1 61 12-83 48-116 (470)
179 2ywi_A Hypothetical conserved 97.0 0.0015 5.2E-08 63.0 8.7 65 13-88 53-147 (196)
180 2xfg_A Endoglucanase 1; hydrol 96.9 0.012 3.9E-07 65.9 15.9 183 224-516 69-259 (466)
181 2cvb_A Probable thiol-disulfid 96.9 0.0013 4.5E-08 63.2 6.8 72 13-87 40-132 (188)
182 2ywm_A Glutaredoxin-like prote 96.8 0.0017 5.7E-08 64.6 7.2 54 15-79 34-89 (229)
183 2lqo_A Putative glutaredoxin R 96.8 0.0018 6.2E-08 56.2 6.4 60 13-87 9-69 (92)
184 2yik_A Endoglucanase; hydrolas 96.8 0.0081 2.8E-07 69.3 13.5 86 414-517 219-306 (611)
185 1a0r_P Phosducin, MEKA, PP33; 96.8 0.00029 9.8E-09 72.3 1.2 62 12-87 139-200 (245)
186 3apo_A DNAJ homolog subfamily 96.8 0.00097 3.3E-08 78.9 5.9 62 13-86 682-743 (780)
187 3fw2_A Thiol-disulfide oxidore 96.8 0.0016 5.6E-08 60.0 6.2 73 13-88 40-133 (150)
188 3drn_A Peroxiredoxin, bacterio 96.8 0.0028 9.5E-08 59.5 7.8 71 13-87 36-126 (161)
189 3uem_A Protein disulfide-isome 96.8 0.00062 2.1E-08 72.7 3.7 56 13-81 274-331 (361)
190 4fo5_A Thioredoxin-like protei 96.7 0.0014 4.7E-08 60.0 5.2 69 13-87 39-129 (143)
191 1a8l_A Protein disulfide oxido 96.7 0.0014 4.6E-08 65.0 5.5 59 13-84 29-90 (226)
192 1jfu_A Thiol:disulfide interch 96.7 0.0028 9.5E-08 60.7 7.2 72 13-87 67-159 (186)
193 1hyu_A AHPF, alkyl hydroperoxi 96.7 0.00094 3.2E-08 75.5 4.3 62 11-87 122-183 (521)
194 3apo_A DNAJ homolog subfamily 96.6 0.0011 3.7E-08 78.5 4.8 61 13-85 140-200 (780)
195 2trc_P Phosducin, MEKA, PP33; 96.6 0.00028 9.5E-09 71.0 -0.5 61 12-86 126-186 (217)
196 3kp9_A Vkorc1/thioredoxin doma 96.6 0.00083 2.8E-08 70.6 3.2 59 10-86 201-263 (291)
197 2hyx_A Protein DIPZ; thioredox 96.6 0.0023 8E-08 69.0 6.5 71 13-87 89-180 (352)
198 3u5r_E Uncharacterized protein 96.5 0.0059 2E-07 60.7 8.3 66 13-89 66-161 (218)
199 3iv4_A Putative oxidoreductase 96.4 0.0025 8.7E-08 57.4 4.2 61 13-88 31-97 (112)
200 1wjk_A C330018D20RIK protein; 96.4 0.0014 4.7E-08 57.4 2.4 54 13-85 22-77 (100)
201 3us3_A Calsequestrin-1; calciu 96.3 0.0025 8.5E-08 68.8 4.6 64 13-85 37-104 (367)
202 1ego_A Glutaredoxin; electron 96.3 0.0025 8.4E-08 53.0 3.5 59 13-86 6-70 (85)
203 2ht9_A Glutaredoxin-2; thiored 96.2 0.0026 8.7E-08 59.9 3.5 61 13-87 54-115 (146)
204 3evi_A Phosducin-like protein 96.2 0.002 6.9E-08 58.4 2.6 59 13-87 30-88 (118)
205 1xvw_A Hypothetical protein RV 96.1 0.0079 2.7E-07 55.9 6.6 35 71-110 119-156 (160)
206 2bmx_A Alkyl hydroperoxidase C 96.0 0.0055 1.9E-07 59.5 5.0 17 71-87 131-147 (195)
207 2cq9_A GLRX2 protein, glutared 96.0 0.0092 3.2E-07 54.6 6.1 60 13-86 32-92 (130)
208 3e6u_A LANC-like protein 1; al 95.9 0.058 2E-06 59.1 13.4 79 415-523 292-370 (411)
209 2djk_A PDI, protein disulfide- 95.9 0.0076 2.6E-07 55.0 5.4 61 13-85 30-93 (133)
210 1ia6_A Cellulase CEL9M; cellul 95.7 0.14 4.8E-06 56.7 15.2 113 167-283 50-194 (441)
211 1kte_A Thioltransferase; redox 95.7 0.0072 2.5E-07 52.5 3.8 60 13-86 17-80 (105)
212 2ggt_A SCO1 protein homolog, m 95.6 0.0081 2.8E-07 55.8 4.2 72 13-87 30-142 (164)
213 2ri9_A Mannosyl-oligosaccharid 95.5 0.56 1.9E-05 52.3 19.4 120 447-574 313-448 (475)
214 1h75_A Glutaredoxin-like prote 95.5 0.017 6E-07 47.4 5.4 56 13-85 6-61 (81)
215 2hze_A Glutaredoxin-1; thiored 95.5 0.0065 2.2E-07 54.1 2.9 64 13-86 24-87 (114)
216 2c0g_A ERP29 homolog, windbeut 95.5 0.012 4.2E-07 60.2 5.3 54 13-83 40-105 (248)
217 2p5q_A Glutathione peroxidase 95.5 0.034 1.2E-06 51.7 8.0 18 70-87 129-149 (170)
218 3nzn_A Glutaredoxin; structura 95.5 0.022 7.5E-07 49.7 6.2 63 13-85 27-89 (103)
219 1x9d_A Endoplasmic reticulum m 95.4 0.78 2.7E-05 51.8 20.1 288 237-601 162-475 (538)
220 1t3b_A Thiol:disulfide interch 95.4 0.0035 1.2E-07 62.3 0.9 15 13-27 93-107 (211)
221 2vup_A Glutathione peroxidase- 95.4 0.036 1.2E-06 53.5 8.0 20 68-87 141-166 (190)
222 1we0_A Alkyl hydroperoxide red 95.2 0.026 9E-07 54.1 6.6 17 71-87 118-134 (187)
223 2rli_A SCO2 protein homolog, m 95.2 0.037 1.3E-06 51.6 7.5 71 13-87 33-145 (171)
224 1uul_A Tryparedoxin peroxidase 95.2 0.021 7.3E-07 55.7 5.8 35 71-110 126-161 (202)
225 1eej_A Thiol:disulfide interch 95.1 0.032 1.1E-06 55.4 7.0 15 13-27 93-107 (216)
226 1hcu_A Alpha-1,2-mannosidase; 95.1 0.69 2.4E-05 51.9 18.5 35 492-526 393-427 (503)
227 3c1r_A Glutaredoxin-1; oxidize 95.1 0.02 7E-07 51.4 5.0 64 13-86 30-94 (118)
228 1zof_A Alkyl hydroperoxide-red 95.1 0.015 5E-07 56.6 4.3 18 71-88 122-139 (198)
229 1zye_A Thioredoxin-dependent p 95.1 0.013 4.4E-07 58.5 4.0 36 71-111 146-182 (220)
230 2klx_A Glutaredoxin; thioredox 95.1 0.029 9.9E-07 47.2 5.6 57 12-86 10-67 (89)
231 1nxc_A Mannosyl-oligosaccharid 95.1 0.23 8E-06 55.4 14.4 157 412-596 105-274 (478)
232 1ks8_A Endo-B-1,4-glucanase; c 95.1 1.5 5.2E-05 48.3 20.9 110 167-283 48-191 (433)
233 3cmi_A Peroxiredoxin HYR1; thi 95.0 0.034 1.2E-06 52.4 6.6 21 67-87 123-149 (171)
234 2yan_A Glutaredoxin-3; oxidore 95.0 0.038 1.3E-06 48.3 6.4 56 15-86 29-84 (105)
235 3msz_A Glutaredoxin 1; alpha-b 95.0 0.016 5.6E-07 48.2 3.9 60 13-86 9-73 (89)
236 1qmv_A Human thioredoxin perox 94.9 0.024 8.3E-07 55.0 5.2 35 71-110 124-159 (197)
237 3rhb_A ATGRXC5, glutaredoxin-C 94.8 0.046 1.6E-06 48.3 6.4 62 13-86 24-85 (113)
238 1fov_A Glutaredoxin 3, GRX3; a 94.8 0.017 5.9E-07 47.3 3.3 58 13-86 6-63 (82)
239 1v58_A Thiol:disulfide interch 94.7 0.0087 3E-07 60.7 1.4 37 67-109 195-231 (241)
240 2v8i_A Pectate lyase; periplas 94.6 0.079 2.7E-06 57.9 8.7 91 417-535 378-470 (543)
241 2h01_A 2-Cys peroxiredoxin; th 94.6 0.0098 3.4E-07 57.5 1.4 18 71-88 120-137 (192)
242 3ic4_A Glutaredoxin (GRX-1); s 94.5 0.056 1.9E-06 45.5 5.9 63 13-86 17-79 (92)
243 1r7h_A NRDH-redoxin; thioredox 94.5 0.03 1E-06 44.9 4.1 56 13-85 6-61 (75)
244 3qmx_A Glutaredoxin A, glutare 94.5 0.054 1.8E-06 47.2 5.9 58 13-86 21-79 (99)
245 3h8q_A Thioredoxin reductase 3 94.5 0.06 2.1E-06 47.9 6.3 60 13-86 22-82 (114)
246 1x9d_A Endoplasmic reticulum m 94.4 0.057 1.9E-06 61.0 7.4 101 487-593 168-269 (538)
247 1dl2_A Class I alpha-1,2-manno 94.4 1.1 3.7E-05 50.4 17.5 286 238-601 93-434 (511)
248 1nxc_A Mannosyl-oligosaccharid 94.3 0.069 2.3E-06 59.7 7.7 102 487-593 104-207 (478)
249 2v1m_A Glutathione peroxidase; 94.1 0.19 6.4E-06 46.6 9.2 17 71-87 132-148 (169)
250 3kij_A Probable glutathione pe 94.0 0.2 7E-06 47.5 9.5 18 70-87 130-151 (180)
251 1hcu_A Alpha-1,2-mannosidase; 94.0 0.35 1.2E-05 54.3 12.7 174 413-599 101-284 (503)
252 2i81_A 2-Cys peroxiredoxin; st 94.0 0.064 2.2E-06 53.1 6.0 18 71-88 141-158 (213)
253 3hd5_A Thiol:disulfide interch 93.9 0.13 4.5E-06 49.6 7.9 37 67-111 147-184 (195)
254 2jsy_A Probable thiol peroxida 93.9 0.12 4E-06 48.3 7.3 37 72-111 128-164 (167)
255 1xvq_A Thiol peroxidase; thior 93.8 0.13 4.4E-06 48.8 7.7 35 73-110 130-164 (175)
256 2g0d_A Nisin biosynthesis prot 93.6 0.75 2.5E-05 49.8 14.3 130 415-586 210-352 (409)
257 3a2v_A Probable peroxiredoxin; 93.6 0.12 4E-06 52.9 7.3 37 71-111 123-159 (249)
258 1dl2_A Class I alpha-1,2-manno 93.5 0.069 2.4E-06 60.1 5.9 103 487-594 98-208 (511)
259 2khp_A Glutaredoxin; thioredox 93.4 0.12 4E-06 43.5 5.9 59 12-86 10-68 (92)
260 2g0d_A Nisin biosynthesis prot 93.3 0.53 1.8E-05 51.0 12.5 145 447-594 153-314 (409)
261 2f8a_A Glutathione peroxidase 93.3 0.22 7.6E-06 49.0 8.6 17 71-87 172-188 (208)
262 1w6k_A Lanosterol synthase; cy 93.3 8.6 0.00029 45.1 23.5 83 204-293 406-502 (732)
263 3ztl_A Thioredoxin peroxidase; 93.3 0.086 2.9E-06 52.4 5.6 18 71-88 159-176 (222)
264 3gkn_A Bacterioferritin comigr 93.3 0.084 2.9E-06 49.0 5.2 16 72-87 125-140 (163)
265 3ctg_A Glutaredoxin-2; reduced 93.2 0.087 3E-06 48.2 5.1 63 13-85 42-105 (129)
266 1g87_A Endocellulase 9G; endog 93.2 2.4 8.3E-05 48.7 18.2 108 167-283 49-192 (614)
267 2k6v_A Putative cytochrome C o 93.2 0.054 1.9E-06 50.5 3.7 17 70-87 136-152 (172)
268 2ri9_A Mannosyl-oligosaccharid 93.1 4.8 0.00016 44.8 19.8 280 237-603 80-413 (475)
269 2p31_A CL683, glutathione pero 93.0 0.067 2.3E-06 51.1 4.1 35 13-50 56-91 (181)
270 3gyk_A 27KDA outer membrane pr 93.0 0.058 2E-06 51.0 3.6 15 13-27 29-43 (175)
271 2hls_A Protein disulfide oxido 92.9 0.093 3.2E-06 53.1 5.2 55 13-78 32-93 (243)
272 2obi_A PHGPX, GPX-4, phospholi 92.8 0.11 3.7E-06 49.5 5.4 16 72-87 150-165 (183)
273 3l4n_A Monothiol glutaredoxin- 92.8 0.11 3.7E-06 47.6 5.0 57 13-85 19-81 (127)
274 2qc7_A ERP31, ERP28, endoplasm 92.7 0.12 3.9E-06 52.7 5.6 55 13-83 29-94 (240)
275 4gqc_A Thiol peroxidase, perox 92.7 0.059 2E-06 51.0 3.2 37 72-112 121-158 (164)
276 3h93_A Thiol:disulfide interch 92.7 0.14 4.8E-06 49.2 6.0 36 68-112 149-185 (192)
277 3dwv_A Glutathione peroxidase- 92.5 0.099 3.4E-06 50.2 4.6 19 69-87 143-164 (187)
278 1wik_A Thioredoxin-like protei 92.2 0.21 7.1E-06 43.9 5.9 55 15-85 27-81 (109)
279 4g2e_A Peroxiredoxin; redox pr 92.2 0.079 2.7E-06 49.6 3.3 35 72-110 119-154 (157)
280 2gs3_A PHGPX, GPX-4, phospholi 91.9 0.33 1.1E-05 46.3 7.5 16 72-87 152-167 (185)
281 3gx8_A Monothiol glutaredoxin- 91.1 0.21 7.2E-06 45.1 4.8 56 13-85 26-85 (121)
282 2wem_A Glutaredoxin-related pr 91.0 0.22 7.4E-06 44.9 4.8 54 13-85 30-87 (118)
283 1xzo_A BSSCO, hypothetical pro 91.0 0.46 1.6E-05 44.2 7.3 19 69-87 133-151 (174)
284 3ipz_A Monothiol glutaredoxin- 91.0 0.16 5.6E-06 44.8 3.8 56 14-85 29-84 (109)
285 1aba_A Glutaredoxin; electron 90.9 0.24 8.1E-06 41.5 4.7 58 16-86 12-77 (87)
286 3zyw_A Glutaredoxin-3; metal b 90.7 0.17 5.9E-06 44.9 3.8 57 13-85 26-82 (111)
287 3gzk_A Cellulase; fold from GH 90.6 1.4 4.8E-05 49.9 12.0 116 167-284 137-285 (537)
288 1psq_A Probable thiol peroxida 90.6 0.42 1.4E-05 44.5 6.6 37 72-111 126-162 (163)
289 1ut9_A Cellulose 1,4-beta-cell 90.5 0.54 1.8E-05 54.2 8.7 84 415-516 291-380 (609)
290 1wzz_A Probable endoglucanase; 90.3 4.1 0.00014 43.2 14.7 180 380-592 17-201 (334)
291 3uem_A Protein disulfide-isome 90.0 0.3 1E-05 51.6 5.7 60 13-83 142-205 (361)
292 3ixr_A Bacterioferritin comigr 89.8 0.3 1E-05 46.6 4.9 34 72-110 141-174 (179)
293 2wci_A Glutaredoxin-4; redox-a 89.7 0.24 8.1E-06 45.8 3.9 55 15-85 47-101 (135)
294 3p7x_A Probable thiol peroxida 89.7 0.47 1.6E-05 44.3 6.1 36 72-110 129-164 (166)
295 2c0d_A Thioredoxin peroxidase 87.6 0.67 2.3E-05 46.1 5.9 36 71-111 145-181 (221)
296 2sqc_A Squalene-hopene cyclase 87.4 15 0.00053 42.1 18.1 131 150-293 330-487 (631)
297 2rem_A Disulfide oxidoreductas 87.3 1.6 5.5E-05 41.4 8.3 16 13-28 32-47 (193)
298 3hz8_A Thiol:disulfide interch 87.1 1.3 4.4E-05 42.7 7.6 34 67-111 150-183 (193)
299 2a4v_A Peroxiredoxin DOT5; yea 86.7 0.76 2.6E-05 42.4 5.4 19 68-87 108-132 (159)
300 2pn8_A Peroxiredoxin-4; thiore 83.9 1.6 5.6E-05 42.7 6.6 18 71-88 138-155 (211)
301 1clc_A Endoglucanase CELD; EC: 83.8 26 0.0009 40.3 17.6 161 412-589 197-378 (639)
302 2yzh_A Probable thiol peroxida 83.8 0.96 3.3E-05 42.3 4.6 37 72-111 133-169 (171)
303 1nm3_A Protein HI0572; hybrid, 82.9 1.1 3.7E-05 44.7 4.8 58 13-87 175-232 (241)
304 3keb_A Probable thiol peroxida 82.7 3.7 0.00013 41.1 8.6 38 72-112 137-174 (224)
305 2b7k_A SCO1 protein; metalloch 82.3 2.9 0.0001 40.2 7.6 15 73-87 146-160 (200)
306 3tjj_A Peroxiredoxin-4; thiore 81.3 0.79 2.7E-05 46.7 3.2 36 71-110 181-216 (254)
307 3zrd_A Thiol peroxidase; oxido 81.2 2.1 7E-05 41.6 6.1 35 72-109 165-199 (200)
308 1ulv_A Glucodextranase; GH fam 80.9 23 0.00079 43.1 16.3 126 451-594 348-480 (1020)
309 1gxm_A Pectate lyase; mechanis 80.7 1.2 4.1E-05 47.1 4.4 42 250-292 76-117 (332)
310 2znm_A Thiol:disulfide interch 80.6 1.7 5.7E-05 41.5 5.1 15 13-27 29-43 (195)
311 3qpm_A Peroxiredoxin; oxidored 80.5 1.5 5.1E-05 44.1 4.9 35 71-109 167-201 (240)
312 4hde_A SCO1/SENC family lipopr 80.4 3.4 0.00012 38.8 7.1 14 72-85 134-147 (170)
313 1w6k_A Lanosterol synthase; cy 79.7 15 0.00051 43.0 13.7 157 415-594 390-570 (732)
314 2ct6_A SH3 domain-binding glut 79.2 1.6 5.5E-05 38.4 4.1 62 13-85 13-83 (111)
315 2wul_A Glutaredoxin related pr 78.8 2.1 7E-05 38.6 4.7 57 12-85 29-87 (118)
316 1q98_A Thiol peroxidase, TPX; 78.3 0.99 3.4E-05 42.0 2.6 34 72-109 130-164 (165)
317 2okx_A Rhamnosidase B; alpha b 76.8 14 0.00049 44.5 12.7 113 409-535 625-751 (956)
318 1n8j_A AHPC, alkyl hydroperoxi 75.5 3.2 0.00011 39.5 5.4 16 72-87 118-133 (186)
319 4eo3_A Bacterioferritin comigr 75.5 4.9 0.00017 42.3 7.2 74 71-160 101-174 (322)
320 1ut9_A Cellulose 1,4-beta-cell 75.4 26 0.00087 40.2 13.7 80 202-283 226-329 (609)
321 1t1v_A SH3BGRL3, SH3 domain-bi 75.0 4.4 0.00015 34.0 5.6 60 13-85 7-71 (93)
322 1r76_A Pectate lyase; A-helica 74.9 2.2 7.5E-05 46.4 4.4 42 250-292 151-195 (408)
323 1wzz_A Probable endoglucanase; 74.9 6.8 0.00023 41.5 8.2 99 415-530 109-209 (334)
324 2xfg_A Endoglucanase 1; hydrol 73.6 94 0.0032 34.3 17.3 119 447-588 112-260 (466)
325 2jg0_A Periplasmic trehalase; 73.3 16 0.00053 41.3 11.1 127 411-568 305-437 (535)
326 1xcc_A 1-Cys peroxiredoxin; un 71.7 5.1 0.00017 39.5 5.9 37 71-111 127-163 (220)
327 1prx_A HORF6; peroxiredoxin, h 71.1 4.8 0.00017 39.8 5.6 37 71-111 130-166 (224)
328 2i3y_A Epididymal secretory gl 71.0 10 0.00034 37.4 7.9 15 73-87 178-192 (215)
329 3cih_A Putative alpha-rhamnosi 71.0 14 0.00048 43.2 10.4 111 410-534 382-508 (739)
330 2z07_A Putative uncharacterize 70.9 20 0.0007 38.5 11.1 50 410-474 237-286 (420)
331 2v2g_A Peroxiredoxin 6; oxidor 70.9 5.2 0.00018 40.0 5.8 37 71-111 126-162 (233)
332 1v5d_A Chitosanase; chitosan d 70.7 25 0.00084 37.9 11.5 129 454-595 98-232 (386)
333 2wfc_A Peroxiredoxin 5, PRDX5; 70.1 3.8 0.00013 38.5 4.4 15 72-87 124-138 (167)
334 2r37_A Glutathione peroxidase 70.0 6.9 0.00024 38.2 6.4 15 73-87 160-174 (207)
335 1r76_A Pectate lyase; A-helica 69.6 1.3E+02 0.0044 32.6 17.3 100 415-533 152-266 (408)
336 1v7w_A Chitobiose phosphorylas 68.8 18 0.0006 42.7 10.7 113 415-530 429-552 (807)
337 2jad_A Yellow fluorescent prot 68.2 3.2 0.00011 44.6 3.7 62 14-85 267-329 (362)
338 2yik_A Endoglucanase; hydrolas 67.5 64 0.0022 36.9 14.6 154 409-587 122-305 (611)
339 1un2_A DSBA, thiol-disulfide i 67.4 2.2 7.5E-05 41.6 2.1 40 13-52 120-159 (197)
340 2okx_A Rhamnosidase B; alpha b 66.9 1.3E+02 0.0045 36.1 18.0 135 451-595 595-740 (956)
341 2x8g_A Thioredoxin glutathione 66.5 3.6 0.00012 46.7 4.0 61 13-86 23-83 (598)
342 3me7_A Putative uncharacterize 66.3 14 0.00049 34.2 7.6 16 71-86 126-141 (170)
343 2h6f_B Protein farnesyltransfe 66.3 9.6 0.00033 41.9 7.2 120 153-296 75-196 (437)
344 1tp9_A Peroxiredoxin, PRX D (t 65.5 4.4 0.00015 37.5 3.7 16 72-88 128-143 (162)
345 1v5d_A Chitosanase; chitosan d 64.5 9.2 0.00031 41.3 6.5 94 415-523 138-231 (386)
346 1ulv_A Glucodextranase; GH fam 64.1 57 0.0019 39.7 14.0 111 151-283 284-420 (1020)
347 2z07_A Putative uncharacterize 61.8 26 0.0009 37.6 9.6 46 490-536 238-288 (420)
348 3qde_A Cellobiose phosphorylas 60.5 53 0.0018 38.9 12.6 116 403-527 412-559 (811)
349 3rrs_A Cellobiose phosphorylas 60.3 67 0.0023 38.1 13.4 58 452-511 383-445 (822)
350 3cu7_A Complement C5; Mg domai 58.4 2.4E+02 0.0082 36.1 19.0 77 203-292 1043-1119(1676)
351 3uma_A Hypothetical peroxiredo 57.4 6.7 0.00023 37.6 3.5 36 71-108 148-183 (184)
352 3ren_A Glycosyl hydrolase, fam 56.2 25 0.00087 37.4 8.0 87 415-523 117-203 (350)
353 3qde_A Cellobiose phosphorylas 55.9 1E+02 0.0035 36.4 14.0 59 451-511 375-438 (811)
354 3rrs_A Cellobiose phosphorylas 55.9 50 0.0017 39.2 11.3 116 403-527 419-566 (822)
355 3ren_A Glycosyl hydrolase, fam 55.5 15 0.00052 39.1 6.1 120 454-593 82-202 (350)
356 4acq_A Alpha-2-macroglobulin; 54.0 63 0.0022 40.9 12.4 80 203-292 979-1058(1451)
357 1nm3_A Protein HI0572; hybrid, 53.2 12 0.00041 36.9 4.7 39 71-110 124-163 (241)
358 1hzf_A Complement factor C4A; 50.4 1.3E+02 0.0044 31.7 12.6 115 152-284 92-227 (367)
359 4fnv_A Heparinase III protein, 50.0 90 0.0031 36.3 12.0 91 413-527 261-359 (702)
360 1wu4_A Xylanase Y; (alpla/alph 50.0 1.6E+02 0.0056 31.6 13.3 73 454-526 89-171 (396)
361 3t72_q RNA polymerase sigma fa 49.4 44 0.0015 28.7 7.1 29 367-395 41-69 (99)
362 2vn4_A Glucoamylase; hydrolase 48.6 1.5E+02 0.005 33.8 13.3 92 415-522 190-291 (599)
363 1kwf_A Endoglucanase A; hydrol 47.2 1.3E+02 0.0046 31.9 12.0 125 454-594 82-215 (363)
364 1kwf_A Endoglucanase A; hydrol 46.6 38 0.0013 36.1 7.6 94 415-524 123-216 (363)
365 2a6h_F RNA polymerase sigma fa 46.3 36 0.0012 37.1 7.4 64 320-405 353-422 (423)
366 1h12_A Endo-1,4-beta-xylanase; 45.4 64 0.0022 34.9 9.2 124 454-593 97-238 (405)
367 3qxf_A Endoglucanase; cellulas 44.2 28 0.00097 37.1 6.0 75 454-528 53-135 (355)
368 1qqf_A Protein (complement C3D 43.5 25 0.00085 35.6 5.4 79 202-293 33-111 (277)
369 1tty_A Sigma-A, RNA polymerase 42.8 48 0.0017 27.2 6.2 55 319-395 10-68 (87)
370 2p0v_A Hypothetical protein BT 42.5 1.9E+02 0.0064 32.1 12.4 113 486-598 178-319 (489)
371 3a0o_A Oligo alginate lyase; a 42.1 4.6E+02 0.016 30.3 18.3 27 251-277 209-235 (776)
372 2sqc_A Squalene-hopene cyclase 41.8 53 0.0018 37.6 8.3 77 452-532 332-417 (631)
373 1u6t_A SH3 domain-binding glut 41.5 31 0.0011 31.0 5.0 40 13-56 5-45 (121)
374 3f4s_A Alpha-DSBA1, putative u 41.4 20 0.00067 35.5 4.0 21 67-87 167-187 (226)
375 3qxf_A Endoglucanase; cellulas 41.0 39 0.0013 36.0 6.5 89 415-522 98-190 (355)
376 3q7a_B Farnesyltransferase bet 39.9 1.6E+02 0.0056 32.9 11.5 126 149-293 107-236 (520)
377 2wy7_A Complement C3D fragment 39.1 31 0.0011 35.5 5.4 79 202-293 49-127 (310)
378 3l9v_A Putative thiol-disulfid 37.1 15 0.00053 34.8 2.4 38 13-50 21-58 (189)
379 2jg0_A Periplasmic trehalase; 36.9 35 0.0012 38.4 5.6 50 487-536 305-361 (535)
380 3q6o_A Sulfhydryl oxidase 1; p 36.4 24 0.00083 34.6 3.8 37 43-87 185-221 (244)
381 1s3c_A Arsenate reductase; ARS 35.9 17 0.00059 33.4 2.4 61 13-87 7-68 (141)
382 1h12_A Endo-1,4-beta-xylanase; 35.6 40 0.0014 36.6 5.6 94 415-530 147-245 (405)
383 1l9z_H Sigma factor SIGA; heli 35.2 39 0.0013 37.0 5.5 53 320-394 368-424 (438)
384 3hug_A RNA polymerase sigma fa 33.7 38 0.0013 28.1 4.1 30 367-396 55-84 (92)
385 2o8x_A Probable RNA polymerase 33.4 36 0.0012 26.2 3.7 29 367-395 33-61 (70)
386 3gkx_A Putative ARSC family re 33.3 24 0.0008 31.4 2.8 59 13-85 9-68 (120)
387 3gv1_A Disulfide interchange p 33.1 22 0.00074 32.8 2.6 33 67-109 105-137 (147)
388 3cih_A Putative alpha-rhamnosi 33.0 60 0.0021 37.8 7.0 56 413-480 456-514 (739)
389 1v7w_A Chitobiose phosphorylas 32.6 2.2E+02 0.0077 33.1 11.9 51 414-476 505-558 (807)
390 2axo_A Hypothetical protein AT 32.3 17 0.00057 37.4 1.8 65 13-86 49-126 (270)
391 1wu4_A Xylanase Y; (alpla/alph 31.9 56 0.0019 35.3 6.0 101 415-530 131-239 (396)
392 1z3e_A Regulatory protein SPX; 31.9 24 0.00081 31.8 2.6 59 13-85 6-65 (132)
393 2p0v_A Hypothetical protein BT 30.9 3E+02 0.01 30.5 11.6 103 415-528 183-324 (489)
394 2fba_A Glucoamylase Glu1; (alp 30.1 1.4E+02 0.0047 33.2 8.9 117 402-532 141-272 (492)
395 4gl3_A Putative glucoamylase; 29.9 1.6E+02 0.0053 32.1 9.1 92 415-521 58-163 (424)
396 3p2c_A Putative glycosyl hydro 29.9 4.8E+02 0.017 28.6 12.9 113 487-599 162-302 (463)
397 4f9z_D Endoplasmic reticulum r 29.8 64 0.0022 31.2 5.6 57 15-82 140-200 (227)
398 1hzf_A Complement factor C4A; 29.8 87 0.003 33.1 7.0 77 203-293 87-163 (367)
399 1tf4_A T. fusca endo/EXO-cellu 29.4 3.1E+02 0.011 31.1 12.0 66 224-294 48-117 (605)
400 4dvc_A Thiol:disulfide interch 29.4 36 0.0012 31.3 3.5 18 67-87 146-163 (184)
401 3sbc_A Peroxiredoxin TSA1; alp 29.3 60 0.002 32.0 5.3 35 72-110 143-177 (216)
402 2dbs_A Hypothetical protein TT 28.7 43 0.0015 27.5 3.3 52 33-85 23-74 (90)
403 1gxm_A Pectate lyase; mechanis 28.6 2.7E+02 0.0091 29.3 10.3 70 415-502 77-149 (332)
404 3c68_A Uncharacterized protein 28.5 58 0.002 38.2 5.8 48 489-536 554-608 (761)
405 2p7v_B Sigma-70, RNA polymeras 28.1 35 0.0012 26.5 2.8 30 367-396 27-56 (68)
406 3rdw_A Putative arsenate reduc 28.1 38 0.0013 30.1 3.3 60 13-86 10-71 (121)
407 3fz4_A Putative arsenate reduc 28.1 33 0.0011 30.5 2.8 59 13-85 8-67 (120)
408 3qt9_A Putative uncharacterize 27.5 4.3E+02 0.015 28.7 11.9 113 487-599 134-274 (427)
409 1gai_A Glucoamylase-471; hydro 27.2 6.5E+02 0.022 27.5 15.9 47 415-476 189-235 (472)
410 3l78_A Regulatory protein SPX; 27.2 32 0.0011 30.5 2.6 59 13-85 5-64 (120)
411 2pwj_A Mitochondrial peroxired 27.0 38 0.0013 31.5 3.2 11 13-23 51-61 (171)
412 1ku3_A Sigma factor SIGA; heli 26.8 58 0.002 25.6 3.9 28 367-394 32-59 (73)
413 2c5z_A SET domain protein 2; S 26.2 1.7E+02 0.0057 25.5 6.7 64 102-165 21-88 (104)
414 3qry_B Putative uncharacterize 26.1 4.2E+02 0.014 28.7 11.5 112 487-599 133-274 (426)
415 3mng_A Peroxiredoxin-5, mitoch 25.7 62 0.0021 30.3 4.5 36 71-108 137-172 (173)
416 3tdg_A DSBG, putative uncharac 25.5 34 0.0012 35.1 2.8 21 14-40 155-175 (273)
417 1z6m_A Conserved hypothetical 25.5 40 0.0014 31.0 3.1 16 13-28 34-49 (175)
418 2jpc_A SSRB; DNA binding prote 25.3 72 0.0025 23.8 4.0 29 367-395 15-43 (61)
419 1n4q_B Geranyltransferase type 25.1 1.6E+02 0.0053 31.5 8.0 124 153-299 69-218 (377)
420 1qqf_A Protein (complement C3D 23.9 5.3E+02 0.018 25.4 13.7 121 152-285 39-172 (277)
421 2pn5_A TEP1R, thioester-contai 23.5 1.1E+03 0.038 29.0 16.8 207 252-573 850-1106(1325)
422 3mzy_A RNA polymerase sigma-H 23.1 68 0.0023 28.5 4.1 30 367-396 126-155 (164)
423 1g9g_A Cellulase CEL48F; proce 22.8 3.2E+02 0.011 30.6 9.7 102 411-528 409-536 (629)
424 3c68_A Uncharacterized protein 22.5 1.1E+02 0.0037 35.9 6.6 51 413-475 554-607 (761)
425 3feu_A Putative lipoprotein; a 22.2 57 0.002 30.7 3.5 32 13-47 29-60 (185)
426 4b2u_A S67; toxin, ICK; NMR {S 22.0 20 0.00068 24.3 0.1 8 11-18 13-20 (36)
427 2vn4_A Glucoamylase; hydrolase 21.8 8.9E+02 0.03 27.2 14.6 139 415-591 56-224 (599)
428 2lfw_A PHYR sigma-like domain; 21.5 93 0.0032 28.2 4.7 33 366-398 110-142 (157)
429 2wy7_A Complement C3D fragment 21.1 6.4E+02 0.022 25.3 14.1 121 152-285 55-188 (310)
430 1or7_A Sigma-24, RNA polymeras 20.7 80 0.0027 29.2 4.2 30 367-396 158-187 (194)
431 3c7m_A Thiol:disulfide interch 20.1 73 0.0025 29.5 3.7 36 13-50 24-61 (195)
432 3nnb_A Alginate lyase; structu 20.0 92 0.0031 33.5 4.9 54 472-528 80-139 (382)
No 1
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=100.00 E-value=4.5e-35 Score=322.69 Aligned_cols=335 Identities=10% Similarity=-0.027 Sum_probs=250.6
Q ss_pred HHHHHHHHH-hcccccCCCCCC------CCCCCChhHHHH----HHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Q 005115 153 LRLCAEQLS-KSYDSRFGGFGS------APKFPRPVEIQM----MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 221 (714)
Q Consensus 153 ~~~~~~~l~-~~~D~~~GGfg~------apKFP~~~~l~~----Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi 221 (714)
++.++.+|. ..+|+++|||++ .|| |.+..+.+ |+.++....... ..+++..+++|.+|++.|.+++
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~-~~~k~l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~fl~~~~- 95 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY-DDLKYVWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGEFLLRHA- 95 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS-CCCEEHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC-CCccchhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHhc-
Confidence 467888998 799999999976 788 76654544 555543221100 0125789999999999999966
Q ss_pred cccCCC-cEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCC
Q 005115 222 HDHVGG-GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADS 299 (714)
Q Consensus 222 ~D~v~G-GF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~-~p~Ggfysa~DADs 299 (714)
+|+.+| ||| ||+|.+|.+||++|||||||+++.+|+++|++|+++.|++.|+++++++++.++ +++| +|++.|++.
T Consensus 96 ~d~~gg~g~~-~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G-~f~~~~~~~ 173 (402)
T 1fp3_A 96 RVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSG-LGRPQLPGA 173 (402)
T ss_dssp BSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGG-GCCCCCTTS
T ss_pred cCcCCCCceE-EEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCc-ccCccccCc
Confidence 999998 999 899999999999999999999999999999999999999999999999999998 6655 567666543
Q ss_pred ccccCcccccCCceEeechHHHHHHhhhhHHHHHH---HhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcC
Q 005115 300 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKE---HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 376 (714)
Q Consensus 300 ~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~---~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g 376 (714)
.+ .+|. + ..-.....+.+ .+.+++++
T Consensus 174 ~~-------~~~~----~------~~m~~~~~~l~l~~l~~~~~~~---------------------------------- 202 (402)
T 1fp3_A 174 VA-------SESM----A------VPMMLLCLVEQLGEEDEELAGR---------------------------------- 202 (402)
T ss_dssp CC-------EEET----H------HHHHHHHHHHHHHTTCHHHHHH----------------------------------
T ss_pred cC-------CCCc----c------hHHHHHHHHHHHHHHHHhcCcH----------------------------------
Confidence 11 0100 0 00001112222 22222110
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhch----HH--------H---HHHHHHHHHHHhhhhhhhhcccCCC
Q 005115 377 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW----NG--------L---VISSFARASKILKSEAESAMFNFPV 441 (714)
Q Consensus 377 ~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~W----Na--------l---~I~aLa~a~~~~~d~~~~~~~~~~~ 441 (714)
-.+.+.+.++.++++ ++.|..|..+++|. +| |. . ..|.|+++++++++
T Consensus 203 -~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~----dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~----------- 265 (402)
T 1fp3_A 203 -YAQLGHWCARRILQH-VQRDGQAVLENVSE----DGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------- 265 (402)
T ss_dssp -THHHHHHHHHHHHTT-EETTTTEECSEEET----TSCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred -HHHHHHHHHHHHHHH-hCcCCCeEEEEECC----CCCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCC-----------
Confidence 124556677778888 88888999999885 36 22 1 34489999999998
Q ss_pred CCCChHHHHHHHHHHHHHH-HHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCChHHHHHHH
Q 005115 442 VGSDRKEYMEVAESAASFI-RRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 514 (714)
Q Consensus 442 ~~~~~~~yl~~A~~~~~~l-~~~l~d~~~G~l~~~-~~~g~~~-----~~~~l~DyA~li~all~LyeaTgd~~~L~~A~ 514 (714)
++|++.|+++++++ .+++|+++.|+++++ +.+|++. ....++.+|.+|.|++.||++|||++||++|.
T Consensus 266 -----~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~ 340 (402)
T 1fp3_A 266 -----AKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFY 340 (402)
T ss_dssp -----HHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999 999999765667765 6777763 23444555688999999999999999999999
Q ss_pred HHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 515 ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 515 ~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
++++.+.++|+|+++|+||++...+..+....|. .-...|-+|..|+..++
T Consensus 341 ~~~~~~~~~f~D~~~G~w~~~~~~~g~~~~~~k~-~~~k~~yH~~r~~~~~~ 391 (402)
T 1fp3_A 341 QVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKG-GPFKGCFHVPRCLAMCE 391 (402)
T ss_dssp HHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSS-CSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCceEeeECCCcCCCCCCCC-CCCCCCCccHHHHHHHH
Confidence 9999999999999999999987766655544332 23567889987765543
No 2
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=100.00 E-value=1e-34 Score=317.83 Aligned_cols=245 Identities=12% Similarity=0.046 Sum_probs=197.9
Q ss_pred CCCcccCCCcE-EEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 005115 219 GGIHDHVGGGF-HRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL-TKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 296 (714)
Q Consensus 219 GGi~D~v~GGF-~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~-t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~D 296 (714)
..++|| +||| +||++|.. .+|| ||||||||++|++|++||++ ++++.|+++|+++++||+++|++|+||||+++|
T Consensus 26 ~~~~D~-~GGf~~~~~~d~~-~~~~-eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d 102 (388)
T 2gz6_A 26 NHSLDS-EGGYFTCLDRQGK-VYDT-DKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDEGNWYFALT 102 (388)
T ss_dssp HHCBCT-TSSBCCEEBTTSC-EEEC-CEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEEC
T ss_pred hcCCCC-CCCEEeEECCCCC-cCCc-chhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 368999 9995 79999998 8898 99999999999999999999 899999999999999999999999999999999
Q ss_pred CCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcC
Q 005115 297 ADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 376 (714)
Q Consensus 297 ADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g 376 (714)
+|+.+
T Consensus 103 ~dg~~--------------------------------------------------------------------------- 107 (388)
T 2gz6_A 103 RGGEP--------------------------------------------------------------------------- 107 (388)
T ss_dssp TTSCB---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 88621
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHH
Q 005115 377 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESA 456 (714)
Q Consensus 377 ~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~ 456 (714)
+|++..+.+||++|.||+++++++++ ++|++.|+++
T Consensus 108 ----------------------------~~~~~~~~~~af~i~al~~~y~~tg~----------------~~~l~~A~~~ 143 (388)
T 2gz6_A 108 ----------------------------LVQPYNIFSDCFAAMAFSQYALASGE----------------EWAKDVAMQA 143 (388)
T ss_dssp ----------------------------CCCCCCHHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHH
T ss_pred ----------------------------ccCCcchHHHHHHHHHHHHHHHHhCC----------------HHHHHHHHHH
Confidence 01122334799999999999999998 8999999999
Q ss_pred HHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 457 ASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 457 ~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
+++|.++++++ .|.+.+.+.++++ ..+ ++++++++.++++||++|+|++|++.|.++++.+.++|+|+++|++....
T Consensus 144 ~~~i~~~~~d~-~g~~~~~~~~~~~-~~~-~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~ 220 (388)
T 2gz6_A 144 YNNVLRRKDNP-KGKYTKTYPGTRP-MKA-LAVPMILANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENV 220 (388)
T ss_dssp HHHHHTC---------------CCC-CEE-THHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEECSEE
T ss_pred HHHHHHHhcCC-CcccCcccCCCCC-CCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999875 4555444554442 333 89999999999999999999999999999999999999998888752211
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 537 GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 537 ~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
..+...+ .++..|...|++|+.++.+|++++.+||+ +.|++.|++++..+..
T Consensus 221 ~~~w~~~--~~~~~~~~~pgh~~e~a~lL~~~~~~tgd---~~~~~~A~~~~~~~~~ 272 (388)
T 2gz6_A 221 APDGSHI--DCFEGRLINPGHGIEAMWFIMDIARRKND---SKTINQAVDVVLNILN 272 (388)
T ss_dssp CTTSCCC--CSTTTTEECHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 1121222 34456789999999999999999999995 7899999999998753
No 3
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=100.00 E-value=1e-32 Score=306.47 Aligned_cols=305 Identities=13% Similarity=0.033 Sum_probs=246.8
Q ss_pred HHHHHHHHHhcccccCCCCCC-------CCCCCChhHHHHH-HH-hhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcc
Q 005115 153 LRLCAEQLSKSYDSRFGGFGS-------APKFPRPVEIQMM-LY-HSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHD 223 (714)
Q Consensus 153 ~~~~~~~l~~~~D~~~GGfg~-------apKFP~~~~l~~L-l~-~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D 223 (714)
+..++..+...+|++ ||+. -|.++.-..++-+ +. +..... . +++..+++|.+|++.|.++ ++|
T Consensus 17 ~~~ll~f~~~~~d~~--GF~~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~----g~~~~l~~A~~~~~fl~~~-~~D 88 (421)
T 2zbl_A 17 TDRIFNFGKNAVVPT--GFGWLGNKGQIKEEMGTHLWITARMLHVYSVAAS-M----GRPGAYDLVDHGIKAMNGA-LRD 88 (421)
T ss_dssp HHHHHHHHGGGEETT--EECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-T----TCTTHHHHHHHHHHHHTTT-TBC
T ss_pred HHHHHHHHHhCcCCC--CcceECCCCCCCCCchhhHHHHHHHHHHHHHHHH-c----CChhHHHHHHHHHHHHHHh-ccC
Confidence 344566677888998 6853 3555554444422 21 222111 1 2478999999999999996 999
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceeeeccCCCccc
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFSAEDADSAET 302 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p-~Ggfysa~DADs~~~ 302 (714)
+++|||| ||+|++|.+|| ||||||||+++.+|++ |++|+++.|++.|+++++++.++|+++ +||||++.|+|+.+
T Consensus 89 ~~~GG~~-~s~d~dg~~~~-~k~lyd~Af~i~al~~-~~~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~- 164 (421)
T 2zbl_A 89 KKYGGWY-ACVNDQGVVDA-SKQGYQHFFALLGAAS-AVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQ- 164 (421)
T ss_dssp TTTSSBC-SEEETTEEEEC-CEEHHHHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCS-
T ss_pred cCCCeEE-EEeCCCCCcCC-chhHHHHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCc-
Confidence 9999999 99999999999 9999999999999999 999999999999999999999999998 79999999998731
Q ss_pred cCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHH
Q 005115 303 EGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKY 382 (714)
Q Consensus 303 ~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~ 382 (714)
.| +
T Consensus 165 ------~~-----------------------------------------------~------------------------ 167 (421)
T 2zbl_A 165 ------TE-----------------------------------------------D------------------------ 167 (421)
T ss_dssp ------BC-----------------------------------------------S------------------------
T ss_pred ------cc-----------------------------------------------c------------------------
Confidence 10 0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005115 383 LNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 460 (714)
Q Consensus 383 ~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~--I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l 460 (714)
...||+.| +.+|+++++++++ ++|++.|.++++++
T Consensus 168 ---------------------------~~~~n~~m~~~~al~~l~~~tgd----------------~~~~~~A~~~~~~~ 204 (421)
T 2zbl_A 168 ---------------------------YRGGNANMHAVEAFLIVYDVTHD----------------KKWLDRALRIASVI 204 (421)
T ss_dssp ---------------------------CEEHHHHHHHHHHHHHHHHTTCC----------------THHHHHHHHHHHHH
T ss_pred ---------------------------cCCCcHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHH
Confidence 02478865 9999999999998 78999999999999
Q ss_pred HHhccccCCCeEEEEecCCCCCCCCC-cch-----------HHHH---HHHHHHHHHHc---CC--h-HHHHHHHHHHHH
Q 005115 461 RRHLYDEQTHRLQHSFRNGPSKAPGF-LDD-----------YAFL---ISGLLDLYEFG---SG--T-KWLVWAIELQNT 519 (714)
Q Consensus 461 ~~~l~d~~~G~l~~~~~~g~~~~~~~-l~D-----------yA~l---i~all~LyeaT---gd--~-~~L~~A~~L~~~ 519 (714)
.+++.+..+|++.+.+.++.....++ ++| |++. ++.|+++|+++ ++ + .|++.|+++++.
T Consensus 205 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~ 284 (421)
T 2zbl_A 205 IHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHA 284 (421)
T ss_dssp CCCCCGGGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred HHHhccCCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHH
Confidence 99998866678887777665434443 555 8887 77899999999 66 5 899999999999
Q ss_pred HHHhccccc-CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005115 520 QDELFLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 598 (714)
Q Consensus 520 ~~~~F~D~~-~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~ 598 (714)
+.+++||++ .||+|.+...++.++.+.|.. ..|+.++.+|++|+.+||+ +.|.+.++++++.+...+...
T Consensus 285 ~~~~g~d~~~~GG~~~~~~~~g~~~~~~k~~------w~~aea~~all~l~~~tgd---~~yl~~a~~~~~~~~~~~~d~ 355 (421)
T 2zbl_A 285 TIRDAWAPDGADGFVYSVDWDGKPIVRERVR------WPIVEAMGTAYALYTLTDD---SQYEEWYQKWWDYCIKYLMDY 355 (421)
T ss_dssp HHHHHBSCSSSSSBCSCBCTTSCBSCCCEEH------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTBCT
T ss_pred HHHHhcCCCCCCcEEEeecCCCCccCCCccc------HHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCC
Confidence 999999988 677777665556666666654 4599999999999999996 789999999999998777653
No 4
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.97 E-value=7.8e-31 Score=257.22 Aligned_cols=124 Identities=40% Similarity=0.777 Sum_probs=120.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.+++||+|||+|++++|++++|++.+|++||.||||+|++|++++.||.++|+++|++|||++||++|+|+||+++||+|
T Consensus 46 F~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p 125 (173)
T 3ira_A 46 IGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIP 125 (173)
T ss_dssp EECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEESSCC
T ss_pred cccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCceeeeeeCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 005115 93 PEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALS 136 (714)
Q Consensus 93 ~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~~~~~ 136 (714)
+++.+++++|+++|++|.+.|+++|++|.+.|++|+++|++...
T Consensus 126 ~~~~~~~~~f~~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (173)
T 3ira_A 126 KNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKITSTIQEMIK 169 (173)
T ss_dssp SSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTCSHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999987543
No 5
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.93 E-value=4.1e-25 Score=243.88 Aligned_cols=260 Identities=15% Similarity=0.097 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHhCCCcccCCCcEEEEecCCCCC-CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 005115 207 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 285 (714)
Q Consensus 207 ~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~-vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~ 285 (714)
..+...|.--..-+ .| .+|||+.+. |.+|. +||+||||++||++|++|+.||++++++.|+++|+++++||.++|+
T Consensus 13 ~~~~~~l~fw~~~~-~D-~~GGf~~~l-~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~ 89 (402)
T 3gt5_A 13 THISDTMAFYHPRC-ID-SAGGFFHYF-RDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHR 89 (402)
T ss_dssp HHHHHHHHHHTTTT-BC-TTSSBCCEE-CTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhcC-CC-CCcCeeeEE-CCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCc
Confidence 34455555544333 57 589999633 44454 7999999999999999999999999999999999999999999999
Q ss_pred CCC-CceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecc
Q 005115 286 GPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIE 364 (714)
Q Consensus 286 ~p~-Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~ 364 (714)
+++ ||||++. .|..+.
T Consensus 90 d~~~Gg~~~~~-~dG~~~-------------------------------------------------------------- 106 (402)
T 3gt5_A 90 NPATGGYAWTL-CDDRVE-------------------------------------------------------------- 106 (402)
T ss_dssp CTTTSCBCSEE-ETTEEE--------------------------------------------------------------
T ss_pred cCCCCcEEEEe-eCCCCC--------------------------------------------------------------
Confidence 998 9999987 443100
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q 005115 365 LNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS 444 (714)
Q Consensus 365 ~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~ 444 (714)
|....+..+|++|.||+. +.++++
T Consensus 107 -----------------------------------------~~~~~lyd~Af~i~al~~-~~~tgd-------------- 130 (402)
T 3gt5_A 107 -----------------------------------------DDTNHCYGLAFVMLAYSC-GLKVGI-------------- 130 (402)
T ss_dssp -----------------------------------------ECCEEHHHHHHHHHHHHH-HHHTTC--------------
T ss_pred -----------------------------------------cCCcchHHHHHHHHHHHH-HHHhCC--------------
Confidence 001112346999999999 566887
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 445 DRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 445 ~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
++|++.|+++++.|.++++|+++|.++.++..+ ........++++.++++++.||++|+|++|+++|.++++.+.++
T Consensus 131 --~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~~~~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 131 --KQAREWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRR 208 (402)
T ss_dssp --TTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCCBCSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTH
T ss_pred --hhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998777665444322 21122457788999999999999999999999999999999999
Q ss_pred cccccCCc---cccCCCCC-Ccc-ccccccC--CCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 524 FLDREGGG---YFNTTGED-PSV-LLRVKED--HDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 524 F~D~~~Gg---ff~t~~~~-~~l-i~r~k~~--~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
|+|+++|. +|+..... ..- ..+++.. -++..|+++..+++.|++++.++++ +.|.+.|.+++.....
T Consensus 209 f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pGH~iE~awlLl~~~~~~~~---~~~~~~A~~l~~~~~~ 282 (402)
T 3gt5_A 209 QAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEV---EWLVPVARSLFDVAVA 282 (402)
T ss_dssp HHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHCCC---TTHHHHHHHHHHHHHH
T ss_pred hhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCCChHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHHH
Confidence 99998776 45433211 000 0111111 1568899999999999999999985 6799999998876543
No 6
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=99.91 E-value=2.5e-23 Score=228.95 Aligned_cols=309 Identities=13% Similarity=0.018 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCcEEE-EecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHH
Q 005115 205 GQKMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYL 280 (714)
Q Consensus 205 ~~~~~~~TL~~m~~GGi~D~v~GGF~R-YsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t---~d~~y~~~A~~~~~fl 280 (714)
..+.....|..... +++|+++|||++ |++|. ..+| ++|||++||++|++|+.||+++ +++.|+++|+++++||
T Consensus 15 l~~~~~~~l~~w~~-~~~D~~~GGf~~~~~~dg-~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl 91 (402)
T 1fp3_A 15 VGQELDRVMAFWLE-HSHDREHGGFFTCLGRDG-RVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFL 91 (402)
T ss_dssp HHHHHHHHHHHHHH-HSBCTTTSSBCCCBCTTS-CBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-cCCCCCCCCEeeEECCCC-CCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 33334556666654 699999999965 44443 3556 7999999999999999999997 9999999999999999
Q ss_pred HHhccCCCC--ceeeeccCCCccccCcccccCCceEeechHHHHHHhhhh--HHH-------HHHHhcccCCCCcCCCCC
Q 005115 281 RRDMIGPGG--EIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AIL-------FKEHYYLKPTGNCDLSRM 349 (714)
Q Consensus 281 ~~~m~~p~G--gfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~--~~~-------~~~~~~v~~~Gn~~~~~~ 349 (714)
.+.|++++| |||++.|+|+.+.+..+.....+||+|...|+.++.++. .+. +.+.|...+.|.+.
T Consensus 92 ~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~---- 167 (402)
T 1fp3_A 92 LRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGR---- 167 (402)
T ss_dssp HHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCC----
T ss_pred HHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccC----
Confidence 999999874 899999999876544445556899999999999998742 122 22222212334321
Q ss_pred CCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH--HHHHHHH---H
Q 005115 350 SDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL--VISSFAR---A 424 (714)
Q Consensus 350 ~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal--~I~aLa~---a 424 (714)
.. .+ |...+.++|+. ++.+++. +
T Consensus 168 --------~~------------------------------------------~~--~~~~~~~~~~~m~~~~~~l~l~~l 195 (402)
T 1fp3_A 168 --------PQ------------------------------------------LP--GAVASESMAVPMMLLCLVEQLGEE 195 (402)
T ss_dssp --------CC------------------------------------------CT--TSCCEEETHHHHHHHHHHHHHHTT
T ss_pred --------cc------------------------------------------cc--CccCCCCcchHHHHHHHHHHHHHH
Confidence 00 00 01122344664 4445666 5
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCC--CCCcchHHHHHH---HHH
Q 005115 425 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKA--PGFLDDYAFLIS---GLL 498 (714)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~--~~~l~DyA~li~---all 498 (714)
+.++++ .|++.|.++++.+.++ .++++|++...+ .++++.. .+..-.+++.|+ .|+
T Consensus 196 ~~~~~~-----------------~~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~ 257 (402)
T 1fp3_A 196 DEELAG-----------------RYAQLGHWCARRILQH-VQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLL 257 (402)
T ss_dssp CHHHHH-----------------HTHHHHHHHHHHHHTT-EETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHH
T ss_pred HHhcCc-----------------HHHHHHHHHHHHHHHH-hCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHH
Confidence 566543 4899999999999999 887777765544 3333211 122245565454 799
Q ss_pred HHHHHcCChHHHHHHHHHHHHH-HHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCc
Q 005115 499 DLYEFGSGTKWLVWAIELQNTQ-DELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKS 577 (714)
Q Consensus 499 ~LyeaTgd~~~L~~A~~L~~~~-~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~ 577 (714)
+++++++++.|++.|+++++.+ .++.||++.|+++.+...+..++. .-+. +...-.+++.++.+++.|+.+||+
T Consensus 258 ~a~~~~~~~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~-~l~d-~~~~~W~qaea~~a~l~ly~~tgd--- 332 (402)
T 1fp3_A 258 RHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPT-QLEW-AMKLWWPHSEAMIAFLMGYSESGD--- 332 (402)
T ss_dssp HHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCS-STTT-TCEEHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccc-cCcC-CCcCcHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999999999 999999875666554222222111 0011 112235778899999999999996
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005115 578 DYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 578 ~~y~e~A~~~l~~~~~~i 595 (714)
+.|.+.|+++.+.+...+
T Consensus 333 ~~yl~~a~~~~~~~~~~f 350 (402)
T 1fp3_A 333 PALLRLFYQVAEYTFRQF 350 (402)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 789999999888876654
No 7
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.89 E-value=2.8e-22 Score=219.76 Aligned_cols=256 Identities=13% Similarity=0.065 Sum_probs=196.2
Q ss_pred HHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHH-HHHHH
Q 005115 183 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANV-YLDAF 261 (714)
Q Consensus 183 l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~-y~~Ay 261 (714)
.-.|+..+..++ ++..++.+..-.+.+..+ +-.++ ..+--|-+++... |..+|
T Consensus 74 ~G~lw~~ye~Tg-------d~~~~~~a~~~~~~l~~~-~~~~~------------------~~~~HD~GF~~~~s~~~~y 127 (397)
T 2zzr_A 74 TGCLWLAYEYNQ-------DKKLKNIAHKNVLSFLNR-INNRI------------------ALDHHDLGFLYTPSCTAEY 127 (397)
T ss_dssp HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH-HHTTC------------------SCCSSTHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHh-hhhcc------------------cCCCCCchHHHHHHHHHHH
Confidence 345666666654 467888887777777652 22211 1111135555554 89999
Q ss_pred HccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCC
Q 005115 262 SLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPT 341 (714)
Q Consensus 262 ~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~ 341 (714)
++|+|+.|++++.+++++|...+ +|.+||..|-+....
T Consensus 128 ~ltg~~~~~~~~~~aA~~L~~r~-~~~~g~iqsw~~~~~----------------------------------------- 165 (397)
T 2zzr_A 128 RINGDVKALEATIKAADKLMERY-QEKGGFIQAWGELGY----------------------------------------- 165 (397)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTE-ETTTTEECCSSSTTC-----------------------------------------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh-CcCCCEEEecccCCC-----------------------------------------
Confidence 99999999999999999999988 778888776442110
Q ss_pred CCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHH
Q 005115 342 GNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSF 421 (714)
Q Consensus 342 Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aL 421 (714)
++ ++ +.++ .|.|.|.+|
T Consensus 166 ~~-------------~~--------------------------------------------~~iI------D~~mni~~L 182 (397)
T 2zzr_A 166 KE-------------HY--------------------------------------------RLII------DCLLNIQLL 182 (397)
T ss_dssp GG-------------GC--------------------------------------------EEET------THHHHTHHH
T ss_pred CC-------------CC--------------------------------------------ceee------chHhHHHHH
Confidence 00 00 1122 347789999
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCCC----CCCCcchH---
Q 005115 422 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSK----APGFLDDY--- 490 (714)
Q Consensus 422 a~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~----~g~~~----~~~~l~Dy--- 490 (714)
++|++++|+ ++|++.|++.++++.++++++ +|+++|+++ +|++. .+|+++||
T Consensus 183 ~~A~~~~gd----------------~~y~~~A~~ha~~~l~~~~r~-dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~Wa 245 (397)
T 2zzr_A 183 FFAYEQTGD----------------EKYRQVAVNHFYASANNVVRD-DSSAFHTFYFDPETGEPLKGVTRQGYSDESSWA 245 (397)
T ss_dssp HHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCT-TSCBCSEEEECTTTCCEEEEECTTSSSTTSCBH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCcccCCcccccCcchhhH
Confidence 999999998 899999999999999999875 689999976 78764 78999997
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 005115 491 ---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 567 (714)
Q Consensus 491 ---A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Llr 567 (714)
||+|.|++++|++|+|++||+.|+++++.++++|. .+++.||++..++ ++.++++ ||+||+++.+|++
T Consensus 246 RGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~-~d~~pywdt~~~~--~~~~~~D------~Sa~aiaA~~Ll~ 316 (397)
T 2zzr_A 246 RGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLP-EDKVSYWDLIFTD--GSGQPRD------TSATATAVCGIHE 316 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCC-TTSCCBSBTTCCT--TSCCCBC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH-HhCCccccCCCCC--CCCCcCC------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999993 2334599886543 3455554 9999999999999
Q ss_pred HHHHhCCCCchH--HHHHHHHHHHHHHHHH
Q 005115 568 LASIVAGSKSDY--YRQNAEHSLAVFETRL 595 (714)
Q Consensus 568 L~~lt~~~~~~~--y~e~A~~~l~~~~~~i 595 (714)
|+.++++....+ |++.|+++|+.+.+..
T Consensus 317 L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y 346 (397)
T 2zzr_A 317 MLKYLPEVDPDKETYKYAMHTMLRSLIEQY 346 (397)
T ss_dssp HHTTSCTTCTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCccchhhHHHHHHHHHHHHHHHHHH
Confidence 999997522356 9999999999987653
No 8
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.89 E-value=1.1e-21 Score=216.62 Aligned_cols=308 Identities=14% Similarity=-0.021 Sum_probs=229.2
Q ss_pred HHHHHHHHH-hcccccCCCCCC--------CCCCCChhHHH--HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Q 005115 153 LRLCAEQLS-KSYDSRFGGFGS--------APKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 221 (714)
Q Consensus 153 ~~~~~~~l~-~~~D~~~GGfg~--------apKFP~~~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi 221 (714)
++.++.+|. ...| ++|||.+ .|.++....++ ++.-+...... .+++..+++|.++++.|.+ .+
T Consensus 15 ~~~~l~fw~~~~~D-~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~----~g~~~~l~~A~~~~~fl~~-~~ 88 (402)
T 3gt5_A 15 ISDTMAFYHPRCID-SAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQ----FGTAEYLDAVHHGLSYVRD-VH 88 (402)
T ss_dssp HHHHHHHHTTTTBC-TTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCC-CCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHH-hC
Confidence 467788885 5789 6999964 24555544333 22222221111 1258999999999999987 68
Q ss_pred cccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCc-eeeeccCCCc
Q 005115 222 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGE-IFSAEDADSA 300 (714)
Q Consensus 222 ~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Gg-fysa~DADs~ 300 (714)
+|..+|||+ +++ +++.+...+|++||+|.+|.++++ |..|+++.|++.|+++++++.+.+++|++| |+.+.+.|..
T Consensus 89 ~d~~~Gg~~-~~~-~dG~~~~~~~~lyd~Af~i~al~~-~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~ 165 (402)
T 3gt5_A 89 RNPATGGYA-WTL-CDDRVEDDTNHCYGLAFVMLAYSC-GLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWN 165 (402)
T ss_dssp BCTTTSCBC-SEE-ETTEEEECCEEHHHHHHHHHHHHH-HHHTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCC
T ss_pred ccCCCCcEE-EEe-eCCCCCcCCcchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCC
Confidence 998879998 477 677666778999999999999999 667999999999999999999999998744 4434433210
Q ss_pred cccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHH
Q 005115 301 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 380 (714)
Q Consensus 301 ~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~ 380 (714)
+
T Consensus 166 ------------------------------------------------------------~------------------- 166 (402)
T 3gt5_A 166 ------------------------------------------------------------F------------------- 166 (402)
T ss_dssp ------------------------------------------------------------B-------------------
T ss_pred ------------------------------------------------------------C-------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005115 381 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 460 (714)
Q Consensus 381 ~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l 460 (714)
.|. + ..+-|+.++.++.++++++++ ++|++.|.++++.+
T Consensus 167 ---------------------~~~---~-~~n~~m~l~eall~L~~~tgd----------------~~~~~~a~~l~~~~ 205 (402)
T 3gt5_A 167 ---------------------TRY---R-GQNANMHMCEAMLAAYEASGE----------------QRYLERALVLADRI 205 (402)
T ss_dssp ---------------------CSC---E-EHHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHH
T ss_pred ---------------------CCC---C-CCCHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHH
Confidence 000 0 011245678899999999998 89999999999999
Q ss_pred HHhccccCCCeEEEEec-CCCCCC-----------CCCcchHHHHHHH---HHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 461 RRHLYDEQTHRLQHSFR-NGPSKA-----------PGFLDDYAFLISG---LLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 461 ~~~l~d~~~G~l~~~~~-~g~~~~-----------~~~l~DyA~li~a---ll~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
.+++.++++|.+...+. ++++.. .+..-.+++.|++ |++++++++++.|++.|++|++.+.+.+|
T Consensus 206 ~~~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~pGH~iE~awlLl~~~~~~~~~~~~~~A~~l~~~~~~~gw 285 (402)
T 3gt5_A 206 TRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEVEWLVPVARSLFDVAVARSW 285 (402)
T ss_dssp HTHHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHB
T ss_pred HHHhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCCChHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 99999988887766654 444321 1112456665554 89999999999999999999999999999
Q ss_pred cccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005115 526 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 598 (714)
Q Consensus 526 D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~ 598 (714)
|+++||+|++...+..++.+.|. -..++.++.+++.|+.+||+ +.|.+.++++.+.....+...
T Consensus 286 d~~~Gg~~~~~d~~g~~~~~~k~------~W~qaEal~a~l~ly~~tgd---~~yl~~a~~~~~~~~~~~~D~ 349 (402)
T 3gt5_A 286 DAVRGGLCYGFAPDGTICDDDKY------FWVQAESLAAAALLATRSGD---ERYWQWYDRLWAYAWQHMVDH 349 (402)
T ss_dssp CTTTCSBCSEECTTSCEEECCEE------HHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTBCT
T ss_pred cCCCCcEEEEEcCCCCeeeCCcc------eeHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCcCC
Confidence 99888888766555554444443 34678899999999999996 789999999998876655543
No 9
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=99.88 E-value=2.6e-21 Score=211.47 Aligned_cols=340 Identities=12% Similarity=0.039 Sum_probs=216.3
Q ss_pred HHHHHHHHHH-HhcccccCCCC-CC---CCC-CCC--hhHHH--HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCC
Q 005115 151 NALRLCAEQL-SKSYDSRFGGF-GS---APK-FPR--PVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG 220 (714)
Q Consensus 151 ~~~~~~~~~l-~~~~D~~~GGf-g~---apK-FP~--~~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GG 220 (714)
.+++.++.+| ...+|+ +||| .. ..+ .|. ....+ ++.-+...... ..+++..+++|.++++.|.+ -
T Consensus 15 ~l~~~~l~fw~~~~~D~-~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~---~~~~~~~~~~A~~~~~~l~~-~ 89 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDS-EGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQ---LEKRENWLKIARNGAKFLAQ-H 89 (388)
T ss_dssp HHHHTHHHHHHHHCBCT-TSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHhHHHHHHhcCCCC-CCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHH-h
Confidence 3456677888 668999 9996 22 233 122 11111 22222221111 01357899999999999988 5
Q ss_pred CcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCc
Q 005115 221 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA 300 (714)
Q Consensus 221 i~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~ 300 (714)
++|. .|||| +++|.+..+..-.|.+|+||++|.+++++|++|+++.|++.|+++++++++.+.+++ |++.....+..
T Consensus 90 ~~~~-~Gg~~-~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~-g~~~~~~~~~~ 166 (388)
T 2gz6_A 90 GRDD-EGNWY-FALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPK-GKYTKTYPGTR 166 (388)
T ss_dssp SBCT-TSCBC-SEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC---------------CC
T ss_pred cCCC-CCCEE-EEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-cccCcccCCCC
Confidence 6776 58999 588888876666899999999999999999999999999999999999999998765 55543222210
Q ss_pred cccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHH
Q 005115 301 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 380 (714)
Q Consensus 301 ~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~ 380 (714)
+ ..| .+ .-.+ -...+.+.|.++.+ +.+ .+
T Consensus 167 ~-------~~~------~~-~~~~---~~~all~l~~~t~d---------------------------~~~-------~~ 195 (388)
T 2gz6_A 167 P-------MKA------LA-VPMI---LANLTLEMEWLLPQ---------------------------ETL-------EN 195 (388)
T ss_dssp C-------CEE------TH-HHHH---HHHHHHHTGGGSCH---------------------------HHH-------HH
T ss_pred C-------CCC------CC-HHHH---HHHHHHHHHHHcCC---------------------------HHH-------HH
Confidence 0 000 00 0000 00111122222210 000 01
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCC-----------cchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 005115 381 KYLNILGECRRKLFDVRSKRPRPHLD-----------DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 449 (714)
Q Consensus 381 ~~~~~l~~~r~~L~~~R~~R~~P~~D-----------dKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~y 449 (714)
...+.++.+.+++.+....+.++++| +.+.-+-|.-+++.|.++++++++ ++|
T Consensus 196 ~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd----------------~~~ 259 (388)
T 2gz6_A 196 VLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKND----------------SKT 259 (388)
T ss_dssp HHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTC----------------HHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCC----------------HHH
Confidence 22233333333333333333333222 223333456678899999999998 899
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 450 MEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 450 l~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~-----~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
++.|+++++++.++.||++.|++++. ..+|.+. ..+.++.+|.++.|++.+|++|||++|+++|.++++.+.++
T Consensus 260 ~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~~yl~~a~~~~~~~~~~ 339 (388)
T 2gz6_A 260 INQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRDACWAWYQKMHDYSWQH 339 (388)
T ss_dssp HHHHHHHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876777765 3556653 34666779999999999999999999999999999999999
Q ss_pred cccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 524 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 524 F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
|.|+++|++|+.-..+..+....|. .-...|-++..|+.-++
T Consensus 340 ~~D~~~G~w~~~l~~~g~~~~~~~~-~~~K~~YH~~~~~~~~~ 381 (388)
T 2gz6_A 340 FADPEYGEWFGYLNRRGEVLLNLKG-GKWKGCFHVPRAMYLCW 381 (388)
T ss_dssp HBCTTTSSBCCEECTTSCBSSCBSC-CSSCSSSHHHHHHHHHH
T ss_pred CcCCCCCceEEeeCCCcCCCCcCCC-CCCCCCcchHHHHHHHH
Confidence 9999999999876655544432222 22346888887665443
No 10
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.88 E-value=1e-21 Score=217.93 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=188.6
Q ss_pred CcccCCCcEEEEecCCCCC-CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCC
Q 005115 221 IHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 298 (714)
Q Consensus 221 i~D~v~GGF~RYsvD~~W~-vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~-Ggfysa~DAD 298 (714)
.+|+. ||+ ++|.+|. +|++|||+++||+||++|+.||+ ++++.|+++|+++++||.+.|+++. ||||.+.|+|
T Consensus 27 ~~d~~--GF~--~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d 101 (421)
T 2zbl_A 27 AVVPT--GFG--WLGNKGQIKEEMGTHLWITARMLHVYSVAAS-MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ 101 (421)
T ss_dssp GEETT--EEC--CBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT
T ss_pred CcCCC--Ccc--eECCCCCCCCCchhhHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC
Confidence 67988 785 9999996 79999999999999999999998 9999999999999999999999986 8999998877
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
..+.
T Consensus 102 g~~~---------------------------------------------------------------------------- 105 (421)
T 2zbl_A 102 GVVD---------------------------------------------------------------------------- 105 (421)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred CCcC----------------------------------------------------------------------------
Confidence 5210
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
++|. ..-|+++|.|++. ++++++ +.|++.|+++.+
T Consensus 106 ---------------------------~~k~-lyd~Af~i~al~~-~~~tg~----------------~~~l~~a~~~~~ 140 (421)
T 2zbl_A 106 ---------------------------ASKQ-GYQHFFALLGAAS-AVTTGH----------------PEARKLLDYTIE 140 (421)
T ss_dssp ---------------------------CCEE-HHHHHHHHHHHHH-HHTTTC----------------TTHHHHHHHHHH
T ss_pred ---------------------------Cchh-HHHHHHHHHHHHH-HHHhCC----------------ccHHHHHHHHHH
Confidence 0111 1125999999999 899998 789999999999
Q ss_pred HHHHhccccCCCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cc
Q 005115 459 FIRRHLYDEQTHRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YF 533 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~-~g~~-~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg---ff 533 (714)
++.+++++++.|+++.+.. ++++ .....++.+++++.+++.+|++|++++|+++|.++++.+..++.+..+|. +|
T Consensus 141 ~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~~~~~~~~~l~~~f 220 (421)
T 2zbl_A 141 VIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHF 220 (421)
T ss_dssp HHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEE
T ss_pred HHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhccCCCCchhhhc
Confidence 9999999986787776643 3322 12244667778899999999999999999999999999999998865554 34
Q ss_pred cCCCCCCcccccc-ccC-CC-----CCCCChHHHHHHHHHHHHHHhCCCCc--h-HHHHHHHHHHHHHHHHH
Q 005115 534 NTTGEDPSVLLRV-KED-HD-----GAEPSGNSVSVINLVRLASIVAGSKS--D-YYRQNAEHSLAVFETRL 595 (714)
Q Consensus 534 ~t~~~~~~li~r~-k~~-~D-----~a~PS~nsvaa~~LlrL~~lt~~~~~--~-~y~e~A~~~l~~~~~~i 595 (714)
+... ..+... .+. .+ +..|.+.-.+++.|++++.++++..+ + .|.+.|.++........
T Consensus 221 ~~~~---~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g 289 (421)
T 2zbl_A 221 DSQW---NPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDA 289 (421)
T ss_dssp CTTS---CBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHH
T ss_pred CCcc---ccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHh
Confidence 3321 111110 111 11 12477776789999999999942101 3 79999998888765443
No 11
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.86 E-value=1.3e-20 Score=205.70 Aligned_cols=256 Identities=18% Similarity=0.153 Sum_probs=194.3
Q ss_pred HHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHH-HHHHHH
Q 005115 183 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLAN-VYLDAF 261 (714)
Q Consensus 183 l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~-~y~~Ay 261 (714)
.-.|+..+..++ ++..++.+..-.+.+..+ +-.++.-.- .|-+.+.. .|..+|
T Consensus 48 ~g~lw~~ye~Tg-------d~~~~~~a~~~~~~l~~~-~~~~~~~~~------------------HD~Gf~~~~s~~~~y 101 (377)
T 2ahf_A 48 SGILWLCYEYTG-------DEQYREGAVRTVASFRER-LDRFENLDH------------------HNIGFLYSLSAKAQW 101 (377)
T ss_dssp HHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH-HTTTTTCCB------------------STHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHh-hhcccCCCC------------------CCchHhhHHHHHHHH
Confidence 345666666654 477888887777777652 222222100 13566664 789999
Q ss_pred HccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCC
Q 005115 262 SLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPT 341 (714)
Q Consensus 262 ~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~ 341 (714)
++|+|+.|++++.++.++|...+. |.+|+..+-+.-. ..
T Consensus 102 ~ltg~~~~~~~~~~aA~~L~~r~~-~~~g~i~sw~~~~----------------------------------------~~ 140 (377)
T 2ahf_A 102 IVEKDESARKLALDAADVLMRRWR-ADAGIIQAWGPKG----------------------------------------DP 140 (377)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTEE-TTTTEECCBSSTT----------------------------------------CT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCC-CCCCeEEeccCCC----------------------------------------CC
Confidence 999999999999999999999875 6766665422100 00
Q ss_pred CCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHH
Q 005115 342 GNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSF 421 (714)
Q Consensus 342 Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aL 421 (714)
+| .| +.++|. -|||.+|
T Consensus 141 ~~-------------~~--------------------------------------------~~iID~------mmni~~L 157 (377)
T 2ahf_A 141 EN-------------GG--------------------------------------------RIIIDC------LLNLPLL 157 (377)
T ss_dssp TT-------------TT--------------------------------------------EEEGGG------GGGHHHH
T ss_pred CC-------------Cc--------------------------------------------eEEech------HHHHHHH
Confidence 00 01 112232 5789999
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCC----CCCCCcchH---
Q 005115 422 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPS----KAPGFLDDY--- 490 (714)
Q Consensus 422 a~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~----~g~~----~~~~~l~Dy--- 490 (714)
++|++++|+ ++|++.|++.++++.++++++ +|+++|+++ +|++ ..+|+++||
T Consensus 158 ~~A~~~~gd----------------~~y~~~A~~~a~~~l~~~~r~-dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~Wa 220 (377)
T 2ahf_A 158 LWAGEQTGD----------------PEYRRVAEAHALKSRRFLVRG-DDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWT 220 (377)
T ss_dssp HHHHHHHCC----------------THHHHHHHHHHHHHHHHTBBT-TSCBCSEEEECTTTCCEEEEECSSSSSTTSCBH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhH
Confidence 999999998 799999999999999999985 589999987 8887 788999996
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC-ccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 491 ---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 491 ---A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~G-gff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
||+|.|++++|++|+|++||+.|+++++.++++| ++.| .||++.. +.++.+++ .||+||+++.+|+
T Consensus 221 RGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~--~~d~~pywd~~~--~~~~~~~~------d~Sa~aiaA~~Ll 290 (377)
T 2ahf_A 221 RGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARV--PEDGVVYWDFEV--PQEPSSYR------DSSASAITACGLL 290 (377)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CTTSSCBSBTTS--CCCTTSCB------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh--HHhCCcccccCC--CccCCCcc------CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 3444 4888754 33444554 3999999999999
Q ss_pred HHHHHhCCC--CchHHHHHHHHHHHHHHHHH
Q 005115 567 RLASIVAGS--KSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 567 rL~~lt~~~--~~~~y~e~A~~~l~~~~~~i 595 (714)
+|+++++.. .+++|++.|+++++.+.+..
T Consensus 291 ~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y 321 (377)
T 2ahf_A 291 EIASQLDESDPERQRFIDAAKTTVTALRDGY 321 (377)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 999999621 13679999999999987643
No 12
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.76 E-value=1.1e-16 Score=173.35 Aligned_cols=240 Identities=15% Similarity=0.090 Sum_probs=179.8
Q ss_pred HHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 005115 182 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF 261 (714)
Q Consensus 182 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay 261 (714)
.+.-|+.++..++ ++..++++.++++.+.. ..+|.+ ++ ..+-|+|.++.++.++|
T Consensus 51 ~~~~l~d~~~~tg-------d~~y~~~a~~~~~~~~~-----~~~~~~----------~~---~~~DD~a~~~la~~~ay 105 (349)
T 3k7x_A 51 LVEVRLDAYLRTK-------KQADLEVAEKTYLHNKN-----RNGGTL----------IH---DFYDDMLWNALAAYRLY 105 (349)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-----HTTSSS----------CC---SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHh-----cCCCCC----------Cc---cCccHHHHHHHHHHHHH
Confidence 3567777777764 47889999999987764 112211 11 22567999999999999
Q ss_pred HccCChHHHHHHHHHHHHH-HHhccCC--CCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcc
Q 005115 262 SLTKDVFYSYICRDILDYL-RRDMIGP--GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYL 338 (714)
Q Consensus 262 ~~t~d~~y~~~A~~~~~fl-~~~m~~p--~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v 338 (714)
++|+++.|++.|+++.+++ ... +++ +|||++..+.+
T Consensus 106 e~t~~~~yL~~A~~l~~~l~~~~-wd~~~gGGi~W~~~~~---------------------------------------- 144 (349)
T 3k7x_A 106 KATGKSIYLEDAQLVWQDLVDTG-WNDIMGGGFAWRRPQM---------------------------------------- 144 (349)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHT-BCSGGGSCBEEETTEE----------------------------------------
T ss_pred HHHCCchHHHHHHHHHHHHHHhC-CCCCCCCceEecCCCc----------------------------------------
Confidence 9999999999999999999 554 444 47787743210
Q ss_pred cCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHH
Q 005115 339 KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVI 418 (714)
Q Consensus 339 ~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I 418 (714)
..+| ++ -|+++|
T Consensus 145 ------------------~~kn------------------------------------------------ai--sN~~~~ 156 (349)
T 3k7x_A 145 ------------------YYKN------------------------------------------------TP--VNAPFI 156 (349)
T ss_dssp ------------------EEEE------------------------------------------------HH--HHHHHH
T ss_pred ------------------cccc------------------------------------------------hh--hHHHHH
Confidence 0011 11 389999
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCC-CCCcchHHHHH
Q 005115 419 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKA-PGFLDDYAFLI 494 (714)
Q Consensus 419 ~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~---~g~~~~-~~~l~DyA~li 494 (714)
.+++++++++++ ++|++.|+++++++.+++++++ |.++.... +|.... ..+..+|+++|
T Consensus 157 ~~la~l~~~tgd----------------~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l 219 (349)
T 3k7x_A 157 ILSCWLYNELNE----------------TKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYI 219 (349)
T ss_dssp HHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHH
Confidence 999999999998 8999999999999999999975 66654322 232221 37888999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
.|++.||++|+|++||++|.+|++.+.++|+. +|-+++. ..++..+|.+++++.+|..|+.+++.
T Consensus 220 ~g~~~LY~~T~d~~yl~~a~~l~~~~~~~f~~--~gi~~~~-------------~~~~D~~sFkgi~~r~L~~l~~~~p~ 284 (349)
T 3k7x_A 220 GANLELYRITKEAIYLDTANKTAAISLKELTE--DGIFKDE-------------GNGGDEGLFKGIFYRYFTDLIEETAN 284 (349)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--TTEECCC-------------CSSSGGGGHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcc--CCcccCC-------------CCCccHHHHHHHHHHHHHHHHHHCCh
Confidence 99999999999999999999999999999973 4433321 12456799999999999999999984
Q ss_pred CCchHHHHHHHHHHHH
Q 005115 575 SKSDYYRQNAEHSLAV 590 (714)
Q Consensus 575 ~~~~~y~e~A~~~l~~ 590 (714)
+.|+...+...++
T Consensus 285 ---~~~~~~l~~sa~a 297 (349)
T 3k7x_A 285 ---KTYRDFVLNSCQI 297 (349)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 4555544444443
No 13
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.59 E-value=9.9e-16 Score=147.03 Aligned_cols=85 Identities=15% Similarity=0.333 Sum_probs=65.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC-Cccccccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKPLMGGTYF 91 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~-g~p~~~~ty~ 91 (714)
.|++||+|||+|++++|+||+|+++||+|||.|+||+++ ++ ...|++ ..+..|+|+++|++|+ |+++..-+++
T Consensus 49 ~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~-~~-~~~l~~----~y~v~~~P~~~fld~~~G~~l~~~~g~ 122 (153)
T 2dlx_A 49 IQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS-EE-GQRYIQ----FYKLGDFPYVSILDPRTGQKLVEWHQL 122 (153)
T ss_dssp EECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSS-HH-HHHHHH----HHTCCSSSEEEEECTTTCCCCEEESSC
T ss_pred EECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCC-Hh-HHHHHH----HcCCCCCCEEEEEeCCCCcEeeecCCC
Confidence 589999999999999999999999999999999999965 32 122221 1277899999999999 8887543334
Q ss_pred CCCCCCCCccHHHHHHHH
Q 005115 92 PPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 92 p~~~~~~~~~f~~~L~~i 109 (714)
+++ .|++.|+++
T Consensus 123 ~~~------~fl~~L~~~ 134 (153)
T 2dlx_A 123 DVS------SFLDQVTGF 134 (153)
T ss_dssp CHH------HHHHHHHHH
T ss_pred CHH------HHHHHHHHH
Confidence 433 566666544
No 14
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=99.56 E-value=2.8e-14 Score=162.43 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 492 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~ 492 (714)
-|++||.|||.|++++.+. .++.++||+.|+++++|+.++.. ++ +++|+ .+++||| +
T Consensus 251 ~agl~aAALA~Asrvf~d~-----------~~~a~~~L~aA~~a~~fa~~~~~-----~y---~~~g~---~~~~De~-~ 307 (586)
T 3h7l_A 251 GGGVAIAALAAASRLGVHG-----------EYDQQKYRNAAENGYWHLKEHNT-----QY---LNDGE---ENIIDEY-C 307 (586)
T ss_dssp THHHHHHHHHHHTTSSSCS-----------SSCHHHHHHHHHHHHHHHHHHHH-----HH---STTSC---CCHHHHH-H
T ss_pred cHHHHHHHHHHHhcccCCC-----------CcChHHHHHHHHHHHHHHHhcCc-----cc---cCCCC---ccchhHH-H
Confidence 4899999999999995431 12237899999999999998853 12 23443 6889999 9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 005115 493 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 572 (714)
Q Consensus 493 li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt 572 (714)
+++|+++||++|||+.||+.|+++.+.+.++|++.+.++||++..++ |.|+.+|++ .|++++.+|++|..++
T Consensus 308 ~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~-----~~r~~~d~a---~~gl~~iaLl~l~~~~ 379 (586)
T 3h7l_A 308 ALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD-----GSRPYFHAA---EAGLPTIALCEYLAIE 379 (586)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS-----SSSBCCCTT---TTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc-----CCccccccc---ccHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999988888899887654 688999976 6899999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHH
Q 005115 573 AGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 573 ~~~~~~~y~e~A~~~l~~~~~ 593 (714)
++ ..+++++++++.....
T Consensus 380 ~d---~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 380 DD---SVQTESVKCIVNRACE 397 (586)
T ss_dssp CS---TTTTHHHHHHHHHHHH
T ss_pred CC---hHHHHHHHHHHHHHhh
Confidence 85 3466777777777665
No 15
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.44 E-value=1e-13 Score=132.66 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYF 91 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-ty~ 91 (714)
.||+||+||++|+..+++++++.+++|.+||.|+||.+ .+++...| ++.|+|+++|++|+|+++... ++.
T Consensus 51 F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~~~~~~~--------~v~~~PT~~f~~~~G~~v~~~~G~~ 121 (151)
T 3ph9_A 51 HHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLSP--------DGQYVPRIMFVDPSLTVRADIAGRY 121 (151)
T ss_dssp ECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CSCGGGCT--------TCCCSSEEEEECTTSCBCTTCCCSC
T ss_pred EECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-chhhHhhc--------CCCCCCEEEEECCCCCEEEEEeCCc
Confidence 68999999999999999999999999999999999954 45655444 678999999999999998652 332
Q ss_pred C-CCCCCCCccHHHHHHHHHHHHhh
Q 005115 92 P-PEDKYGRPGFKTILRKVKDAWDK 115 (714)
Q Consensus 92 p-~~~~~~~~~f~~~L~~i~~~w~~ 115 (714)
+ +.-.+...+|.++|+.+.++++.
T Consensus 122 ~~~~~~~~~~~~~~ll~~~~~al~~ 146 (151)
T 3ph9_A 122 SNRLYTYEPRDLPLLIENMKKALRL 146 (151)
T ss_dssp TTSTTCCCGGGHHHHHHHHHHHHSC
T ss_pred CCcccccchhhHHHHHHHHHHHHHH
Confidence 2 11123445799999999888764
No 16
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.39 E-value=2.4e-12 Score=139.33 Aligned_cols=141 Identities=17% Similarity=0.074 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA 491 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA 491 (714)
-||+.|+.+|..+++++++ ++|++.|.+++.++...- .+.+ ..++.|||+
T Consensus 46 WW~a~~~~~l~d~~~~tgd----------------~~y~~~a~~~~~~~~~~~----~~~~----------~~~~~DD~a 95 (349)
T 3k7x_A 46 WWLAHLVEVRLDAYLRTKK----------------QADLEVAEKTYLHNKNRN----GGTL----------IHDFYDDML 95 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHT----TSSS----------CCSBHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhcC----CCCC----------CccCccHHH
Confidence 5999999999999999998 899999999999988642 2222 356789999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc-CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHH
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS 570 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~-~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~ 570 (714)
|++.+++++|++|++++||+.|+++++.+...+||++ +||+|+... +..+++++ +|+.++.++.+|++
T Consensus 96 ~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~---------~~~~knai--sN~~~~~~la~l~~ 164 (349)
T 3k7x_A 96 WNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRP---------QMYYKNTP--VNAPFIILSCWLYN 164 (349)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETT---------EEEEEEHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCC---------Cccccchh--hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954556654 688887642 12345544 89999999999999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 571 IVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 571 lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
+|++ +.|.+.|++++.-+...+.
T Consensus 165 ~tgd---~~Yl~~A~~~~~w~~~~l~ 187 (349)
T 3k7x_A 165 ELNE---TKYLEWAMKTYEWQTKVLV 187 (349)
T ss_dssp HHCC---HHHHHHHHHHHHHHHHHHB
T ss_pred HhCC---HHHHHHHHHHHHHHHhcCC
Confidence 9996 8899999999998877653
No 17
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.33 E-value=1.7e-11 Score=134.28 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=138.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhc------CCC--CCCCcchhhchH---HHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 005115 375 LGMPLEKYLNILGECRRKLFDVRSK------RPR--PHLDDKVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVG 443 (714)
Q Consensus 375 ~g~~~~~~~~~l~~~r~~L~~~R~~------R~~--P~~DdKilt~WN---al~I~aLa~a~~~~~d~~~~~~~~~~~~~ 443 (714)
.+++.+++++.|+.++++|.+.|.. |.+ |.+|+|++++|| |+++.+|..+|+++||
T Consensus 20 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd------------- 86 (382)
T 3pmm_A 20 RFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD------------- 86 (382)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hcCCHHHHHHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC-------------
Confidence 4688899999999999999998876 555 889999999999 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 444 SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 444 ~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
++|++.|++..+.+.+. +|.+ ...+|++++ .+++++|+.|||++|++.|.++++.+.++
T Consensus 87 ---~~y~~~a~~~~~~~~~~-----~~~~------------~n~D~~~~~-~~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~ 145 (382)
T 3pmm_A 87 ---IEMRDIIDRWFADRFAE-----GATT------------KNVNTMAPF-LTLAYRFEETGRMAYLPWLESWAEWAMHE 145 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----CCCC------------CCTTTTTTH-HHHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcC-----CCCc------------CcccchHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 89999999977654321 2221 246777766 48999999999999999999999999888
Q ss_pred cccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 524 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 524 F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
+.+.+.|+|+....+.. ....-..| +..+++..|.+++.+||+ ++|.+.|.+.+..+...+.
T Consensus 146 ~~r~~~Ggf~~~~~~~~---~~~~~WiD-----gl~M~~p~La~~~~~tgd---~~y~d~A~~q~~~~~~~l~ 207 (382)
T 3pmm_A 146 MPRTEQGGMQHMTLAEE---NHQQMWDD-----TLMMTVLPLAKIGKLLNR---PQYVEEATYQFLLHVQNLM 207 (382)
T ss_dssp SCBCGGGCBCCCCSSCC---CTTEEETT-----HHHHTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHB
T ss_pred CCCCcCCCeeeecCCCC---CCCcEEec-----chhhhHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHcc
Confidence 88888888876532110 00011113 345677788999999996 7899999887777777663
No 18
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.31 E-value=2.3e-12 Score=124.19 Aligned_cols=97 Identities=16% Similarity=0.287 Sum_probs=74.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHH------------------HHHHHHHHHhcCCCCcCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD------------------KVYMTYVQALYGGGGWPL 74 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~------------------~~y~~~~q~~~g~~g~P~ 74 (714)
.+|+||++|+.|+.+.|+++++.+.++++|+.|+||.++.+++. ...........|+.|+|+
T Consensus 54 F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt 133 (172)
T 3f9u_A 54 FTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPF 133 (172)
T ss_dssp EECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSCCCSSE
T ss_pred EECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHHHcCCCCcce
Confidence 68999999999999999999999999999999999999887551 101111111238899999
Q ss_pred eEEeCCCCccccc-ccccC-CCCCCCCccHHHHHHHHHHHHhh
Q 005115 75 SVFLSPDLKPLMG-GTYFP-PEDKYGRPGFKTILRKVKDAWDK 115 (714)
Q Consensus 75 ~vfl~p~g~p~~~-~ty~p-~~~~~~~~~f~~~L~~i~~~w~~ 115 (714)
++|++++|+++.. .+|.+ ++ .|.+.|+++.+.+++
T Consensus 134 ~~lid~~G~~~~~~~G~~~~~~------~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 134 YVLIDNEGNPLNKSYAYDEDIS------KYINFLQTGLENYRK 170 (172)
T ss_dssp EEEECTTSCBSSCCBCSCCCHH------HHHHHHHHHHHHHHH
T ss_pred EEEECCCCCEEeeccCCCCCHH------HHHHHHHHHHHHhhc
Confidence 9999999999865 35555 33 688888877766654
No 19
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.29 E-value=1.7e-10 Score=125.86 Aligned_cols=250 Identities=15% Similarity=0.083 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCC-CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVP-HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 280 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vP-HFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl 280 (714)
++++++.+...-+.++. -|+. .|||.| +-+.. ..| .--.+..||=++|.+++.|+++++|+.|+++|...++++
T Consensus 106 ~~~~~~~~~~aA~~L~~--r~~~-~~g~i~-sw~~~-~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~ 180 (377)
T 2ahf_A 106 DESARKLALDAADVLMR--RWRA-DAGIIQ-AWGPK-GDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKS 180 (377)
T ss_dssp CHHHHHHHHHHHHHHHT--TEET-TTTEEC-CBSST-TCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--hCCC-CCCeEE-eccCC-CCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999887 4664 567776 32210 012 122688899999999999999999999999999999999
Q ss_pred HHhccCCCCceeeeccCCCccccCcccccCCce-EeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCc
Q 005115 281 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAF-YVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGK 359 (714)
Q Consensus 281 ~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~y-Y~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~ 359 (714)
++.+..++|.+|+...-|.. .|.. .-|+
T Consensus 181 l~~~~r~dgs~~h~~~~D~~---------tG~~~~~~t------------------------------------------ 209 (377)
T 2ahf_A 181 RRFLVRGDDSSYHTFYFDPE---------NGNAIRGGT------------------------------------------ 209 (377)
T ss_dssp HHHTBBTTSCBCSEEEECTT---------TCCEEEEEC------------------------------------------
T ss_pred HHhCcCCCCCeEEEEEeeCC---------CCCeeeCCC------------------------------------------
Confidence 99999888888876443321 1111 0011
Q ss_pred ceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccC
Q 005115 360 NVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNF 439 (714)
Q Consensus 360 niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~ 439 (714)
...+.||..=+--+|.+|.+|+.+++++++
T Consensus 210 -----------------------------------------~qG~~dds~WaRGqAw~i~gl~~ly~~T~d--------- 239 (377)
T 2ahf_A 210 -----------------------------------------HQGNTDGSTWTRGQAWGIYGFALNSRYLGN--------- 239 (377)
T ss_dssp -----------------------------------------SSSSSTTSCBHHHHHHHHHHHHHHHHHHTC---------
T ss_pred -----------------------------------------cCCcCCcchhHHHHHHHHHHHHHHHHHHCC---------
Confidence 112445543333379999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC-----ChHHHHHH
Q 005115 440 PVVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWA 513 (714)
Q Consensus 440 ~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~-l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTg-----d~~~L~~A 513 (714)
++||+.|+++++++.+++ +++|. ++++..+..+....-.+..|.++.||++|++.|+ +++|++.|
T Consensus 240 -------~~yL~~A~~la~~~l~~~--~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A 310 (377)
T 2ahf_A 240 -------ADLLETAKRMARHFLARV--PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAA 310 (377)
T ss_dssp -------HHHHHHHHHHHHHHHTTC--CTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHhh--HHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHH
Confidence 899999999999999998 34554 5443222222223335567889999999999996 78899999
Q ss_pred HHHHHHHHHhccccc---CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHH
Q 005115 514 IELQNTQDELFLDRE---GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS 570 (714)
Q Consensus 514 ~~L~~~~~~~F~D~~---~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~ 570 (714)
+++++.+.+.+.... ++|...-..-+ .......|..+|.+..-.+++|.||..
T Consensus 311 ~~~l~~l~~~y~~~~~~~~~g~L~h~~~~----~~~~~~~d~~~~ygDy~~~Eal~r~~~ 366 (377)
T 2ahf_A 311 KTTVTALRDGYAERDDGEAEGFIRRGSYH----VRGGISPDDYTIWGDYYYLEALLRLER 366 (377)
T ss_dssp HHHHHHHHHHTBCCCCSSCCCSBSCBCSB----TTTTBSSSBCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEeccccc----CCCCCCCCcCccHHHHHHHHHHHHHHc
Confidence 999999988875432 12222211100 001112466778888888889888876
No 20
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.26 E-value=1.3e-10 Score=127.55 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 281 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~ 281 (714)
++++++.+..+-+.++. -| +-.|||.+ |.+..- .|.-.-+..||-+-|.+++.|+++++|+.|+++|.+.+++++
T Consensus 132 ~~~~~~~~~~aA~~L~~--r~-~~~~g~iq-sw~~~~-~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l 206 (397)
T 2zzr_A 132 DVKALEATIKAADKLME--RY-QEKGGFIQ-AWGELG-YKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASA 206 (397)
T ss_dssp CHHHHHHHHHHHHHHHT--TE-ETTTTEEC-CSSSTT-CGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--Hh-CcCCCEEE-ecccCC-CCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 57899999999999987 56 55677776 443211 122237888999999999999999999999999999999999
Q ss_pred HhccCCCCceeeeccCCCccccCcccccCCceE-eechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcc
Q 005115 282 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFY-VWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 360 (714)
Q Consensus 282 ~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY-~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~n 360 (714)
+++..++|..|+...-|.. .|... -|+
T Consensus 207 ~~~~r~dgs~~h~~~~d~~---------~G~~~~~~t------------------------------------------- 234 (397)
T 2zzr_A 207 NNVVRDDSSAFHTFYFDPE---------TGEPLKGVT------------------------------------------- 234 (397)
T ss_dssp HHTBCTTSCBCSEEEECTT---------TCCEEEEEC-------------------------------------------
T ss_pred HhCcCCCCCeEEEEEeeCC---------CCCcccCCc-------------------------------------------
Confidence 9999888988887655531 11110 011
Q ss_pred eecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 005115 361 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 440 (714)
Q Consensus 361 iL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~ 440 (714)
..-+.||..=+--+|.+|.||+.+|+++++
T Consensus 235 ----------------------------------------~qGy~dds~WaRGqAw~i~gl~~lY~~T~d---------- 264 (397)
T 2zzr_A 235 ----------------------------------------RQGYSDESSWARGQAWGIYGIPLSYRKMKD---------- 264 (397)
T ss_dssp ----------------------------------------TTSSSTTSCBHHHHHHHHHHHHHHHHHHCC----------
T ss_pred ----------------------------------------ccccCcchhhHHHHHHHHHHHHHHHHHHCC----------
Confidence 112445552233379999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCC---hH--HHHHHH
Q 005115 441 VVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG---TK--WLVWAI 514 (714)
Q Consensus 441 ~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~-l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd---~~--~L~~A~ 514 (714)
++||+.|+++++++.+++. ++|. ++.+..++.+..+.=.+..|.++.||++|++.|++ .+ |++.|+
T Consensus 265 ------~~yL~~A~~la~~~l~~~~--~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~ 336 (397)
T 2zzr_A 265 ------YQQIILFKGMTNYFLNRLP--EDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMH 336 (397)
T ss_dssp ------HHHHHHHHHHHHHHHHTCC--TTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhhH--HhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHH
Confidence 8999999999999999983 3454 55543332222222256678899999999999987 78 999999
Q ss_pred HHHHHHHHhccc
Q 005115 515 ELQNTQDELFLD 526 (714)
Q Consensus 515 ~L~~~~~~~F~D 526 (714)
++++.+......
T Consensus 337 ~~l~~l~~~y~~ 348 (397)
T 2zzr_A 337 TMLRSLIEQYSN 348 (397)
T ss_dssp HHHHHHHHHTBC
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 21
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=3.4e-11 Score=133.66 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcC------CCCCCC--------------cchhhchHHHHHHHHHHHHHHhhhhhhhhc
Q 005115 377 MPLEKYLNILGECRRKLFDVRSKR------PRPHLD--------------DKVIVSWNGLVISSFARASKILKSEAESAM 436 (714)
Q Consensus 377 ~~~~~~~~~l~~~r~~L~~~R~~R------~~P~~D--------------dKilt~WNal~I~aLa~a~~~~~d~~~~~~ 436 (714)
++.+++++.|+.+.+.|-+..--| ....+| -....-.+|+||.||+++++++|+
T Consensus 27 ~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv~l~gl~~ay~~Tgd------ 100 (445)
T 3k11_A 27 LTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGVTYSALIAAAETTGD------ 100 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHHHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHHHHHHHHHHHHHHCC------
Confidence 467788888888888877622111 111111 111112359999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhc------cccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHH
Q 005115 437 FNFPVVGSDRKEYMEVAESAASFIRRHL------YDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWL 510 (714)
Q Consensus 437 ~~~~~~~~~~~~yl~~A~~~~~~l~~~l------~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L 510 (714)
++|++.|++.++||.+++ ++. +|++.+.++++ . ..+++|||++++.+++++|++|++++|+
T Consensus 101 ----------~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~~-~-~~~~LDD~g~~~~~Li~lY~~T~d~~yl 167 (445)
T 3k11_A 101 ----------KRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQI-L-TPHALDDAGAVCTAMIKLRLKDESLPVD 167 (445)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHH-H-SCCSGGGTHHHHHHHHHHHHHCTTCCCH
T ss_pred ----------HHHHHHHHHHHHHHHhccchhhhhhhc-cCCeecccccc-c-CCCcchhHHHHHHHHHHHHHhcCCHHHH
Confidence 899999999999998754 343 57777767665 2 3789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHH
Q 005115 511 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY--YRQNAEHSL 588 (714)
Q Consensus 511 ~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~--y~e~A~~~l 588 (714)
+.|.++++.+.++|++.+.|+|+........++ .| +.-++.--|.+++.+||+ ++ |.+.|.+-+
T Consensus 168 ~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~W------iD-----~lyM~~pfla~~~~~tgd---~~~~y~d~A~~q~ 233 (445)
T 3k11_A 168 GLIQNYFDFIINKEYRLADGTFARNRPQRNTLW------LD-----DMFMGIPAVAQMSRYDKE---AKNKYLAEAVKQF 233 (445)
T ss_dssp HHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEE------TH-----HHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCceeecCCCCCceE------ec-----chhhHHHHHHHHHHHHCC---cchHHHHHHHHHH
Confidence 999999999999999888899887532111221 12 223455668889999985 66 888887766
Q ss_pred HHHHHHH
Q 005115 589 AVFETRL 595 (714)
Q Consensus 589 ~~~~~~i 595 (714)
..+...+
T Consensus 234 ~~~~~~l 240 (445)
T 3k11_A 234 LQFADRM 240 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666554
No 22
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.21 E-value=6.6e-10 Score=121.24 Aligned_cols=258 Identities=13% Similarity=0.130 Sum_probs=176.3
Q ss_pred CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHH
Q 005115 178 PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVY 257 (714)
Q Consensus 178 P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y 257 (714)
++...+.-|+..+..++ +++.++.+....+.+.. . +|... |.. .+ + |+-.+..++
T Consensus 42 ~~G~~~~gl~~~y~~tg-------d~~y~~~a~~~~~~~~~-----~-~g~l~-~~~------~~----l-Dd~~~g~~l 96 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEATG-------EKRYFEYAKAYADLLID-----D-NGNLL-FRR------DE----L-DAIQAGLIL 96 (373)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHBC-----T-TCCBC-CCT------TC----G-GGTGGGGGH
T ss_pred hHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHhC-----C-CCccc-CCC------CC----c-chHHHHHHH
Confidence 44555666777776654 47899999999888742 2 22221 221 11 3 332367789
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhc
Q 005115 258 LDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYY 337 (714)
Q Consensus 258 ~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~ 337 (714)
++.|++|+|+.|++.|.+..++|......++|||+...+ +. +-+|
T Consensus 97 l~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~~~-~~-------------~~~w--------------------- 141 (373)
T 1nc5_A 97 FPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDG-YP-------------YQMW--------------------- 141 (373)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTT-ST-------------TEEE---------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeeccCC-CC-------------CeEE---------------------
Confidence 999999999999999999999997655455677754210 00 0000
Q ss_pred ccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHH
Q 005115 338 LKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV 417 (714)
Q Consensus 338 v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~ 417 (714)
.| - ..++
T Consensus 142 -------------------------------------------------------------------~D-~-----l~m~ 148 (373)
T 1nc5_A 142 -------------------------------------------------------------------LD-G-----LYMG 148 (373)
T ss_dssp -------------------------------------------------------------------TH-H-----HHHH
T ss_pred -------------------------------------------------------------------eC-c-----HHHH
Confidence 11 1 1255
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC----CCCC-----Cc
Q 005115 418 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS----KAPG-----FL 487 (714)
Q Consensus 418 I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g-~~----~~~~-----~l 487 (714)
+..|+++++++|+ ++|++.|.+.+....++++|+++|.++|.+... +. ...+ ..
T Consensus 149 ~p~L~~l~~~tgd----------------~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~Wa 212 (373)
T 1nc5_A 149 GPFALKYANLKQE----------------TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWA 212 (373)
T ss_dssp HHHHHHHHHHHTC----------------THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBH
T ss_pred HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCccc
Confidence 7789999999998 799999999999999999999999888886532 11 0011 12
Q ss_pred chHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 005115 488 DDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 562 (714)
Q Consensus 488 ~DyA~li~all~Lyea-----Tgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa 562 (714)
-..+|++.|++++|+. +++++|++.++++++.+.++. ++++|.|. ..-+++.... .-.+-|+.++++
T Consensus 213 Rg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q-~~~dG~W~-~~ld~~~~~~------~~~EsSatA~~a 284 (373)
T 1nc5_A 213 RSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQ-DKETGLWY-QIVDKGDRSD------NWLESSGSCLYM 284 (373)
T ss_dssp HHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTS-CTTTSCCB-SBTTCTTSTT------CCBCHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhc-CCCCCcee-eecCCCCCCC------CCccccHHHHHH
Confidence 2779999999999998 688899999999999998776 65566433 2211111100 013468888999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 563 INLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 563 ~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
..|+++.+.--. ++.|++.|+++++.+...
T Consensus 285 y~l~~g~~~g~l--~~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 285 YAIAKGINKGYL--DRAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHTSS--CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC--cHHHHHHHHHHHHHHHHh
Confidence 999988755211 257999999999887553
No 23
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.18 E-value=8e-10 Score=121.01 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCC--CCCCcchHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSK--APGFLDDYA 491 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~-~g~~~--~~~~l~DyA 491 (714)
.|.+-.|+++++++|+ ++|++.|.+.+....++++|+++|.++|.+. .|... .....-.++
T Consensus 173 ~M~~p~La~~~~~tgd----------------~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~g 236 (382)
T 3pmm_A 173 MMTVLPLAKIGKLLNR----------------PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNS 236 (382)
T ss_dssp HHTHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHH
T ss_pred hhhHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceeccccc
Confidence 4556789999999998 8999999999999999999999999999864 33321 223334789
Q ss_pred HHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHH
Q 005115 492 FLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 564 (714)
Q Consensus 492 ~li~all~Lyea-------Tgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~ 564 (714)
|++.|++++++. ++++++++.++++++.+.++- + ++|.|+ ..-+++. ...+-|+.|+++.+
T Consensus 237 W~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q-~-~~G~W~-~~~d~~~---------~y~EsSatA~~ay~ 304 (382)
T 3pmm_A 237 WLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQ-D-DSGLWH-TLLDDPH---------SYLEASATAGFAYG 304 (382)
T ss_dssp HHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHC-C-TTSCEE-SBTTCTT---------SCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcC-C-CCCChh-hccCCCC---------CCccccHHHHHHHH
Confidence 999999999998 667889999999999998875 4 456444 3322222 11247899999999
Q ss_pred HHHHHH--HhCCCCchHHHHHHHHHHHHHHHHH
Q 005115 565 LVRLAS--IVAGSKSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 565 LlrL~~--lt~~~~~~~y~e~A~~~l~~~~~~i 595 (714)
|++..+ +.+ +.|++.|+++++.+.+.+
T Consensus 305 ll~~~~~g~l~----~~Y~~~a~ka~~~l~~~i 333 (382)
T 3pmm_A 305 ILKAVRKRYVG----QHYAGVAEKAIRGIVQNI 333 (382)
T ss_dssp HHHHHHTTSSC----GGGHHHHHHHHHHHHHTB
T ss_pred HHHHHHcCCCc----HHHHHHHHHHHHHHHhhC
Confidence 999888 332 579999999999987664
No 24
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.14 E-value=2.1e-10 Score=125.18 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=113.2
Q ss_pred hhch---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC
Q 005115 410 IVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 486 (714)
Q Consensus 410 lt~W---Nal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~ 486 (714)
-++| ||+++.+|.++++++++ ++|++.|++.++++. ++ +|++. ++.|.
T Consensus 36 ~~~W~w~~G~~~~gl~~~y~~tgd----------------~~y~~~a~~~~~~~~----~~-~g~l~--~~~~~------ 86 (373)
T 1nc5_A 36 ANRWHYHQGVFLCGVLRLWEATGE----------------KRYFEYAKAYADLLI----DD-NGNLL--FRRDE------ 86 (373)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHB----CT-TCCBC--CCTTC------
T ss_pred CCCcchhHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHh----CC-CCccc--CCCCC------
Confidence 5789 99999999999999998 899999999999874 32 45543 44432
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 566 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll 566 (714)
++||+ ++.++++||++|+|++|++.|.++.+.+..+| +.+.|+||.+..... +...|+ ..+++..|.
T Consensus 87 lDd~~-~g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~-r~~~G~fw~~~~~~~------~~w~D~-----l~m~~p~L~ 153 (373)
T 1nc5_A 87 LDAIQ-AGLILFPLYEQTKDERYVKAAKRLRSLYGTLN-RTSEGGFWHKDGYPY------QMWLDG-----LYMGGPFAL 153 (373)
T ss_dssp GGGTG-GGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSC-BCTTSCBCSCTTSTT------EEETHH-----HHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-CCCCCCeeccCCCCC------eEEeCc-----HHHHHHHHH
Confidence 88998 67899999999999999999999999997766 666788887532211 122232 225678899
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 567 RLASIVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 567 rL~~lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
+++.+||+ ++|.+.|.+.+..+...+.
T Consensus 154 ~l~~~tgd---~~y~d~A~~~~~~~~~~l~ 180 (373)
T 1nc5_A 154 KYANLKQE---TELFDQVVLQESLMRKHTK 180 (373)
T ss_dssp HHHHHHTC---THHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCC---HHHHHHHHHHHHHHHHHhc
Confidence 99999996 7899999999999988873
No 25
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.14 E-value=1e-09 Score=121.86 Aligned_cols=269 Identities=12% Similarity=0.121 Sum_probs=190.3
Q ss_pred CCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCC-----CcccCCCcEEEEecCCCCCCCCCchhHHHHH
Q 005115 177 FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGG-----IHDHVGGGFHRYSVDERWHVPHFEKMLYDQG 251 (714)
Q Consensus 177 FP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GG-----i~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA 251 (714)
+|+...+.-|++.+..++ +++.++.+.+..+.+..+- .+|.-|+-.+||.- +..|+ .|-|.|
T Consensus 82 y~~Gv~l~gl~~ay~~Tg-------d~kY~~ya~~~~dfi~~~~p~~~~~~~~~G~l~~~~r~---~~~~~---~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTG-------DKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDSQLLQ---ILTPH---ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH---HHSCC---SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHhccchhhhhhhccCCeeccccc---ccCCC---cchhHH
Confidence 566777777888877765 4788888888887766410 22332222233321 12254 477899
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHH
Q 005115 252 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAI 330 (714)
Q Consensus 252 ~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~-~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~ 330 (714)
.++.++.++|+.|+++.|++.|.+.++||.+.+. .++|||+.. +.. + .-+|-
T Consensus 149 ~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~---~~~---------~--~q~Wi------------- 201 (445)
T 3k11_A 149 AVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARN---RPQ---------R--NTLWL------------- 201 (445)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBC---SSS---------T--TEEET-------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeec---CCC---------C--CceEe-------------
Confidence 9999999999999999999999999999999874 567888763 100 0 00111
Q ss_pred HHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchh
Q 005115 331 LFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVI 410 (714)
Q Consensus 331 ~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKil 410 (714)
|.
T Consensus 202 ---------------------------------------------------------------------------D~--- 203 (445)
T 3k11_A 202 ---------------------------------------------------------------------------DD--- 203 (445)
T ss_dssp ---------------------------------------------------------------------------HH---
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 11
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH--HHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--CC
Q 005115 411 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE--YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--GF 486 (714)
Q Consensus 411 t~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~--yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~--~~ 486 (714)
.-|.+--|+++++++++ ++ |++.|.+-+....++++|+++|.++|.+..+..... -.
T Consensus 204 ---lyM~~pfla~~~~~tgd----------------~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~W 264 (445)
T 3k11_A 204 ---MFMGIPAVAQMSRYDKE----------------AKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCW 264 (445)
T ss_dssp ---HHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCB
T ss_pred ---hhhHHHHHHHHHHHHCC----------------cchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCccee
Confidence 13566789999999998 67 999999999999999999999999998754322112 23
Q ss_pred cchHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHH
Q 005115 487 LDDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 561 (714)
Q Consensus 487 l~DyA~li~all~Lyea-----Tgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsva 561 (714)
.-..+|++.|++++++. ++.+.+++..+++++.+.++- ++ +|.|+... +++. -..+-|+.|++
T Consensus 265 aRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q-~~-~G~W~~vl-d~~~---------~y~EsSaTAmf 332 (445)
T 3k11_A 265 ARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQ-SG-EGFWHQLL-DCND---------SYLETSATAIY 332 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTC-CT-TSCEESBT-TCTT---------SCEEHHHHHHH
T ss_pred cccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhC-CC-CCchhhcc-CCCC---------CCCCccHHHHH
Confidence 34789999999999997 667889999999999998765 53 56444322 2211 12347889999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005115 562 VINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 562 a~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i 595 (714)
+.+|++..+. |--+...|+..|++.++.+...+
T Consensus 333 aygllkgvr~-G~Ld~~~Y~~~A~ka~~~L~~~i 365 (445)
T 3k11_A 333 VYCLAHAINK-GWIDAIAYGPVAQLGWHAVAGKI 365 (445)
T ss_dssp HHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999988775 32212579999999999987544
No 26
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.03 E-value=1.7e-10 Score=106.00 Aligned_cols=88 Identities=19% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcC---CCCccHHHHHHHHHHHhcCC---CCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDR---EERPDVDKVYMTYVQALYGG---GGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~---ee~p~i~~~y~~~~q~~~g~---~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.|.. .|+++++++.++++++.|+||. ++.+++.+.| |. .|+|+++|++++|+++.
T Consensus 36 f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~--------~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 36 FGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAY--------GDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp EECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHT--------TCGGGGCSSEEEEECTTSCEEE
T ss_pred EcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHh--------CCccCCccceEEEECCCCCEEE
Confidence 58999999999997 6999999999999999999999 8888888888 88 99999999999999885
Q ss_pred c--ccccCCCCCCCCccHHHHHHHH
Q 005115 87 G--GTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 87 ~--~ty~p~~~~~~~~~f~~~L~~i 109 (714)
. |+.++.....+...+.+.|+++
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHh
Confidence 4 3333322222333455555544
No 27
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=98.95 E-value=6.3e-10 Score=105.73 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=61.0
Q ss_pred CC-CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHH----HHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RR-THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY----MTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~-t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y----~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+ ++||.+|+.|....++++++++..+.+|+.|+||.++.+++...+ ...++ ..|..|+|+++|++++|+++..
T Consensus 54 F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~-~~~v~~~Pt~~~~d~~G~~~~~ 132 (154)
T 2ju5_A 54 FTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKA-QYKVTGFPELVFIDAEGKQLAR 132 (154)
T ss_dssp EECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHH-HTTCCSSSEEEEECTTCCEEEE
T ss_pred EeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHH-HcCCCCCCEEEEEcCCCCEEEE
Confidence 46 899999999999999999999999999999999999876221111 11111 2388999999999999999864
Q ss_pred cccc
Q 005115 88 GTYF 91 (714)
Q Consensus 88 ~ty~ 91 (714)
.+|.
T Consensus 133 ~G~~ 136 (154)
T 2ju5_A 133 MGFE 136 (154)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 3455
No 28
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.91 E-value=3.1e-10 Score=103.67 Aligned_cols=83 Identities=10% Similarity=-0.049 Sum_probs=65.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-c
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-T 89 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-t 89 (714)
.|++||.||++|+++++++.++.+.+. .+..++||.++ .+++...| +..|.||.||+. +|+++... +
T Consensus 25 F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~--------~V~g~PT~i~f~-~G~ev~Ri~G 94 (116)
T 3dml_A 25 FEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELAR--------PVTFTPTFVLMA-GDVESGRLEG 94 (116)
T ss_dssp EECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSS--------CCCSSSEEEEEE-TTEEEEEEEC
T ss_pred EECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHC--------CCCCCCEEEEEE-CCEEEeeecC
Confidence 689999999999999999988765553 35555566555 45777666 788999999999 99999763 6
Q ss_pred ccCCCCCCCCccHHHHHHHHHH
Q 005115 90 YFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 90 y~p~~~~~~~~~f~~~L~~i~~ 111 (714)
|.|++ .|.+.|+++..
T Consensus 95 ~~~~~------~f~~~L~~~l~ 110 (116)
T 3dml_A 95 YPGED------FFWPMLARLIG 110 (116)
T ss_dssp CCCHH------HHHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHh
Confidence 88865 68888887644
No 29
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1e-09 Score=100.05 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=59.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.|....++++++++.++.+|+.++||.++ .+++.+.| |..|+|+++|++++|+++..
T Consensus 34 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 34 CFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKY--------GVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp ECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHT--------TCCSSCEEEEECTTSCEEEE
T ss_pred EECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHc--------CCCCCCEEEEECCCCcEEEE
Confidence 589999999999999999999999999999999999984 55666666 88999999999999998854
No 30
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=98.86 E-value=1e-09 Score=101.51 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC----ccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc--c
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL--M 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~----p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~--~ 86 (714)
.|++||.+|+.|....|+++++++.++ +++.++||.++. +++.+.| |..|+|+++|++++|+++ .
T Consensus 38 F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~--------~v~~~Pt~~~~d~~G~~v~~~ 108 (134)
T 2fwh_A 38 LYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHL--------NVLGLPTILFFDGQGQEHPQA 108 (134)
T ss_dssp EECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHT--------TCCSSSEEEEECTTSCBCGGG
T ss_pred EECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHc--------CCCCCCEEEEECCCCCEeeee
Confidence 589999999999999999999999886 599999999654 3344444 889999999999999997 2
Q ss_pred c-ccccCCCCCCCCccHHHHHHH
Q 005115 87 G-GTYFPPEDKYGRPGFKTILRK 108 (714)
Q Consensus 87 ~-~ty~p~~~~~~~~~f~~~L~~ 108 (714)
. .++.+++ .|.+.|++
T Consensus 109 ~~~G~~~~~------~l~~~l~~ 125 (134)
T 2fwh_A 109 RVTGFMDAE------TFSAHLRD 125 (134)
T ss_dssp CBCSCCCHH------HHHHHHHH
T ss_pred eeeeccCHH------HHHHHHHh
Confidence 2 3455533 45555554
No 31
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.25 E-value=7.8e-10 Score=100.99 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=57.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcC--CCCccHHHHHHHHHHHhcCCCCcCceEEeCCC-Ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~--ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~-g~p 84 (714)
.|++||++|+.|....|+++++++.++.+|+.++||. ++.+++.+.| |..|+|+++|++|+ |++
T Consensus 26 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 26 FHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRY--------RVPGTPTFVFLVPKAGAW 92 (130)
Confidence 6899999999999999999999999999999999988 5667888877 78899999999974 887
No 32
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.62 E-value=2.7e-08 Score=91.97 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|++++|+++...++.+
T Consensus 58 f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~~g~~~~~~G~~~ 126 (141)
T 3hxs_A 58 FYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKEPELARDF--------GIQSIPTIWFVPMKGEPQVNMGALS 126 (141)
T ss_dssp EECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSSCCEEEESCCC
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCCHHHHHHc--------CCCCcCEEEEEeCCCCEEEEeCCCC
Confidence 6899999999998665 7788888888999999999999998888 8999999999999999874333333
No 33
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.61 E-value=3.5e-08 Score=91.19 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=55.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|++++|+++
T Consensus 44 ~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~G~~~ 106 (136)
T 2l5l_A 44 DFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEKEQELAGAF--------GIRSIPSILFIPMEGKPE 106 (136)
T ss_dssp EEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSCEEEEECSSSCCE
T ss_pred EEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCCCHHHHHHc--------CCCCCCEEEEECCCCcEE
Confidence 36899999999998654 5677778778999999999999888888 889999999999999987
No 34
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=98.59 E-value=2.7e-08 Score=90.30 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEc--CCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVD--REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD--~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++|| .++.+++.+.| |..|+|+++|++++|+++..
T Consensus 33 f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~--------~v~~~Pt~~~~~~~G~~~~~ 98 (126)
T 2l57_A 33 FKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKY--------DANIVPTTVFLDKEGNKFYV 98 (126)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHT--------TCCSSSEEEEECTTCCEEEE
T ss_pred EECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHc--------CCcceeEEEEECCCCCEEEE
Confidence 5899999999999764 56777777789999999 88888887777 88999999999999998753
No 35
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.52 E-value=1e-07 Score=83.31 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 26 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 26 FWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDESPNVASEY--------GIRSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHH--------TCCSSCEEEEE-SSSSEEEE
T ss_pred EECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCCcCCEEEEE-eCCEEEEE
Confidence 5899999999998654 5677777778999999999999998888 88999998887 79998753
No 36
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.52 E-value=8.4e-08 Score=84.04 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+.+|+ ++|+.+..
T Consensus 27 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 27 FWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCTTHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCcccCEEEEE-eCCEEEEE
Confidence 5899999999998663 5677777778999999999999998888 88999999999 89998743
No 37
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.50 E-value=8.6e-08 Score=85.29 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|+ ++|+++..
T Consensus 24 f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 86 (112)
T 2voc_A 24 FWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDENQETAGKY--------GVMSIPTLLVL-KDGEVVET 86 (112)
T ss_dssp EECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTCCSHHHHT--------TCCSBSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCCcccEEEEE-eCCEEEEE
Confidence 5899999999999764 6788888778999999999999999888 88999999999 89998753
No 38
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.47 E-value=5.1e-08 Score=85.01 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=54.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..|+|+++|+ ++|+++..
T Consensus 24 f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 86 (105)
T 1nsw_A 24 FWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDENPETTSQF--------GIMSIPTLILF-KGGRPVKQ 86 (105)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCCHHHHHHc--------CCccccEEEEE-eCCeEEEE
Confidence 5899999999998764 5677777777999999999999888888 88999999999 89998753
No 39
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.47 E-value=1.1e-07 Score=82.85 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..++|+.+|+ ++|+++..
T Consensus 27 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 27 FWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNPETPNAY--------QVRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCCHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCHHHHHhc--------CCCccCEEEEE-eCCEEEEE
Confidence 5899999999998764 6788888778999999999999988888 88999999999 89998753
No 40
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=92.32 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHH--HH------HHHHHh--cCCCCcCceEEeCCCCc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV--YM------TYVQAL--YGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~--y~------~~~q~~--~g~~g~P~~vfl~p~g~ 83 (714)
|++||.+|++|.+++|.|++|.++||+|||....|.+........ |+ .+.+.+ .+..++|+.+|+++++.
T Consensus 63 hs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~ 142 (178)
T 2ec4_A 63 HHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRS 142 (178)
T ss_dssp ECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSS
T ss_pred eCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCC
Confidence 789999999999999999999999999999999999875432221 11 122221 26789999999998864
Q ss_pred ---cccc-ccccCCCCCCCCccHHHHHHHHHHHHh
Q 005115 84 ---PLMG-GTYFPPEDKYGRPGFKTILRKVKDAWD 114 (714)
Q Consensus 84 ---p~~~-~ty~p~~~~~~~~~f~~~L~~i~~~w~ 114 (714)
.+.. -++.+++ .|++.|..+.+.|+
T Consensus 143 ~~~vl~~~~G~~~~~------~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 143 SNEVLNVIQGNTTVD------ELMMRLMAAMEIFT 171 (178)
T ss_dssp CCCEEEEECSCCCHH------HHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCHH------HHHHHHHHHHHHhh
Confidence 3322 2445544 57777777766665
No 41
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.46 E-value=2.5e-07 Score=84.04 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| +..++|+++|+.++++
T Consensus 42 f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~~~ 101 (130)
T 2dml_A 42 FYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKHQSLGGQY--------GVQGFPTIKIFGANKN 101 (130)
T ss_dssp EECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHH--------TCCSSSEEEEESSCTT
T ss_pred EECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCCHHHHHHc--------CCCccCEEEEEeCCCC
Confidence 5899999999999764 6788888777999999999999998888 8899999999999887
No 42
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=98.45 E-value=1.1e-07 Score=84.85 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.||+||+.|+.|.... .++++.. .+.+.++||.++.|++.+.| |+.|+||.+|+ .+|+++..
T Consensus 27 F~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~d~~~~l~~~~--------~V~~~PT~~~~-~~G~~v~~ 88 (105)
T 3zzx_A 27 FYATWCGPCKMIAPKL---EELSQSM-SDVVFLKVDVDECEDIAQDN--------QIACMPTFLFM-KNGQKLDS 88 (105)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTEEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEEEEE
T ss_pred EECCCCCCccCCCcch---hhhhhcc-CCeEEEEEecccCHHHHHHc--------CCCeecEEEEE-ECCEEEEE
Confidence 6999999999998654 3465544 57889999999999999998 89999998887 69998844
No 43
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.42 E-value=1.8e-07 Score=81.70 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.+..++..++||.++.|++.+.| +..|+|+++|+ ++|+.+..
T Consensus 28 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 28 CWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDENQKIADKY--------SVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEccccCHHHHHhc--------CcccCCEEEEE-cCCcEEEe
Confidence 5899999999998543 4566677778999999999999998888 89999999999 99998854
No 44
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.42 E-value=1.9e-07 Score=81.95 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=54.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||+.|+.|.... .++++.++.++..++||.++.+++.+.| |..++|+++|+ .+|+++..
T Consensus 29 f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 29 FSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEKTLFQRF--------SLKGVPQILYF-KDGEYKGK 91 (111)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSCEEEEE-ETTEEEEE
T ss_pred EeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcChhHHHhc--------CCCcCCEEEEE-ECCEEEEE
Confidence 5899999999998654 6677777778999999999999998888 88999999999 78988743
No 45
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.42 E-value=1.1e-07 Score=86.70 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|+ .+|+.+..
T Consensus 49 F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 111 (128)
T 3ul3_B 49 FFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNESLARKF--------SVKSLPTIILL-KNKTMLAR 111 (128)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCCcCEEEEE-ECCEEEEE
Confidence 6899999999999764 6788888889999999999999988888 89999999999 79998754
No 46
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.41 E-value=2e-07 Score=80.95 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 25 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 25 FWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEAPGIATQY--------NIRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcchHHHHHhC--------CCCcccEEEEE-eCCeEEEE
Confidence 5899999999998664 5677778778999999999999888888 88999998877 79998754
No 47
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.39 E-value=2.3e-07 Score=83.46 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=53.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|+ ++|+++..
T Consensus 38 f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 38 FHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDDHTDLAIEY--------EVSAVPTVLAM-KNGDVVDK 100 (119)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTTTHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCHHHHHHc--------CCCcccEEEEE-eCCcEEEE
Confidence 5899999999998653 4567777678999999999999888888 88999999999 89998743
No 48
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.38 E-value=4e-08 Score=89.71 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCCCCChhhHhhhhhhCC---C--------HHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC
Q 005115 13 RRTHFLIKCHVMEVESFE---D--------EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 81 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~---~--------~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~ 81 (714)
.|++||+||..|+.+.|. . .++++.+..++..++||.++.+++.+.| |..|+|+.+|+ ++
T Consensus 28 F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~-~~ 98 (123)
T 1oaz_A 28 FWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KN 98 (123)
T ss_dssp EECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGG--------TCCBSSEEEEE-ES
T ss_pred EECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-EC
Confidence 589999944444444443 1 3456666667999999999999999888 89999999999 99
Q ss_pred Cccccc
Q 005115 82 LKPLMG 87 (714)
Q Consensus 82 g~p~~~ 87 (714)
|+++..
T Consensus 99 G~~~~~ 104 (123)
T 1oaz_A 99 GEVAAT 104 (123)
T ss_dssp SSEEEE
T ss_pred CEEEEE
Confidence 998743
No 49
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.38 E-value=2.6e-07 Score=77.23 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=49.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.+++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++| +|++
T Consensus 8 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 8 FTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVDREKAIEY--------GLMAVPAIAI---NGVV 65 (85)
T ss_dssp ESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTCGGGGGGT--------CSSCSSEEEE---TTTE
T ss_pred EECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCCHHHHHhC--------CceeeCEEEE---CCEE
Confidence 5899999999998643 4566667668999999999999988888 8999999988 8887
No 50
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.38 E-value=1.7e-07 Score=85.94 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|+ ++|+++..
T Consensus 47 F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 47 FWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp EECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCCTTSGGG--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-eCCEEEEE
Confidence 5899999999998664 5677777778999999999999998888 88999999999 89998743
No 51
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.37 E-value=3e-07 Score=80.99 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|... | .++++.+..++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 31 f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 31 FTATWCGPCKMIAPL-F--ETLSNDYAGKVIFLKVDVDAVAAVAEAA--------GITAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp EECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTTHHHHHHH--------TCCBSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHH-H--HHHHHHcCCCeEEEEEECCchHHHHHHc--------CCCcccEEEEE-ECCeEEEE
Confidence 589999999999865 3 4577777668999999999999998888 88999997777 79998743
No 52
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.36 E-value=2.1e-07 Score=80.87 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| +..|+|+.+|+. +|+.+..
T Consensus 26 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~-~G~~~~~ 88 (106)
T 3die_A 26 FWATACGPCKMIAPVL---EELAADYEGKADILKLDVDENPSTAAKY--------EVMSIPTLIVFK-DGQPVDK 88 (106)
T ss_dssp EECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSBSEEEEEE-TTEEEEE
T ss_pred EECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcCHHHHHhC--------CCcccCEEEEEe-CCeEEEE
Confidence 5899999999998765 7788888777999999999999998888 899999999995 9998754
No 53
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.36 E-value=2.6e-07 Score=81.54 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 30 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 92 (112)
T 1t00_A 30 FWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDENPGTAAKY--------GVMSIPTLNVY-QGGEVAKT 92 (112)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCCCHHHHHhC--------CCCcccEEEEE-eCCEEEEE
Confidence 5899999999998653 4677777677999999999999988888 88999998877 79998743
No 54
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.36 E-value=2.2e-07 Score=80.91 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=54.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 25 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 87 (109)
T 2yzu_A 25 FWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDENPKTAMRY--------RVMSIPTVILF-KDGQPVEV 87 (109)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCCCHhHHHhC--------CCCcCCEEEEE-eCCcEeee
Confidence 5899999999998754 6677778778999999999999888888 88999999999 89998753
No 55
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.35 E-value=3.4e-07 Score=80.79 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=54.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..++|+++|+ ++|+++..
T Consensus 32 f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 32 FWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDPNPTTVKKY--------KVEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp EECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCCCHHHHHHc--------CCCceeEEEEE-cCCEEEEE
Confidence 5899999999998754 5777777777999999999999888888 88999999999 89998753
No 56
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=98.34 E-value=1.3e-05 Score=91.56 Aligned_cols=184 Identities=13% Similarity=0.093 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCch------------h-------HHHHHHHHHHHHHHHHc
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEK------------M-------LYDQGQLANVYLDAFSL 263 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEK------------M-------LyDNA~ll~~y~~Ay~~ 263 (714)
+++++.+.--++-|.+ +++. .|+|| +.|-..|.-+.-+. . ---|++++.+++.|+++
T Consensus 190 ~~lldE~rWg~D~llk--m~~~-~g~~y-~qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asrv 265 (586)
T 3h7l_A 190 TRLIEEALFGADFLVR--MQNE-KGFFY-MTVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASRL 265 (586)
T ss_dssp HHHHHHHHHHHHHHHH--TBCT-TSCBB-CEEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHh--cccC-CCeEE-EEecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhcc
Confidence 5889999999999988 6665 56677 46644575321000 0 01389999999999999
Q ss_pred -----cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcc
Q 005115 264 -----TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYL 338 (714)
Q Consensus 264 -----t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v 338 (714)
.+.+.|++.|+++++|+.+++. .|+. |.++
T Consensus 266 f~d~~~~a~~~L~aA~~a~~fa~~~~~----~y~~--~g~~--------------------------------------- 300 (586)
T 3h7l_A 266 GVHGEYDQQKYRNAAENGYWHLKEHNT----QYLN--DGEE--------------------------------------- 300 (586)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHHHHH----HHST--TSCC---------------------------------------
T ss_pred cCCCCcChHHHHHHHHHHHHHHHhcCc----cccC--CCCc---------------------------------------
Confidence 5557889999999999998752 1210 0000
Q ss_pred cCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHH
Q 005115 339 KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVI 418 (714)
Q Consensus 339 ~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I 418 (714)
| +.||. .++
T Consensus 301 ---~-------------------------------------------------------------~~De~-------~~~ 309 (586)
T 3h7l_A 301 ---N-------------------------------------------------------------IIDEY-------CAL 309 (586)
T ss_dssp ---C-------------------------------------------------------------HHHHH-------HHH
T ss_pred ---c-------------------------------------------------------------chhHH-------HHH
Confidence 0 11222 579
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 005115 419 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLL 498 (714)
Q Consensus 419 ~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all 498 (714)
||.+++|+++++ +.||+.|+..++.+.+++++.+.++++++..++.....-.....+..+.+|+
T Consensus 310 WAA~eLy~ATgd----------------~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaLl 373 (586)
T 3h7l_A 310 LASVELFKATKE----------------TRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALC 373 (586)
T ss_dssp HHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHHH
T ss_pred HHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHHH
Confidence 999999999998 8999999999999999998766677877643332211111124567788999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Q 005115 499 DLYEFGSGTKWLVWAIELQNTQDE 522 (714)
Q Consensus 499 ~LyeaTgd~~~L~~A~~L~~~~~~ 522 (714)
.+.+.+++..+.+.|+++.....+
T Consensus 374 ~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 374 EYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HhhhhcCChHHHHHHHHHHHHHhh
Confidence 999999998888888887777665
No 57
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.32 E-value=8.5e-07 Score=82.30 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... +++++.+..++..++||.++.+++.+.| |..|+|+.+|+ .+|+++..
T Consensus 31 F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 31 FYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATNPWTAEKY--------GVQGTPTFKFF-CHGRPVWE 93 (140)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTCHHHHHHH--------TCCEESEEEEE-ETTEEEEE
T ss_pred EECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcCHhHHHHC--------CCCcCCEEEEE-eCCcEEEE
Confidence 6899999999999765 7788888888999999999999999888 89999988888 78998743
No 58
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6e-07 Score=81.56 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln----~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||++|+.|.... .++++.++ .++..++||.++.+++.+.| +..|+|+++|+.+ |+.+
T Consensus 32 f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~-g~~~ 96 (133)
T 1x5d_A 32 FYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVNQVLASRY--------GIRGFPTIKIFQK-GESP 96 (133)
T ss_dssp EECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTCCHHHHHH--------TCCSSSEEEEEET-TEEE
T ss_pred EECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCCHHHHHhC--------CCCeeCeEEEEeC-CCce
Confidence 5899999999999765 46777776 68999999999999999888 8899999999987 7755
No 59
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.32 E-value=3.5e-07 Score=82.08 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=53.5
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..|+|+++|+.++|+.
T Consensus 27 ~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 27 DFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPSVKLYQYERAK 88 (122)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEEEEEGGG
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCCHHHHHHc--------CCCccceEEEEeCCCcc
Confidence 35899999999999754 5688888778999999999999888888 88999999999887774
No 60
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.31 E-value=6.7e-07 Score=81.48 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.|++||++|+.|... | .++++.+. .+++.++||.++.+.+.+.| +..|+|+++|+.+.++
T Consensus 32 f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g~~ 93 (133)
T 2dj3_A 32 FYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATANDITNDQY--------KVEGFPTIYFAPSGDK 93 (133)
T ss_dssp ECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSCCCCSSC--------CCSSSSEEEEECTTCT
T ss_pred EECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCHHHHhhc--------CCCcCCEEEEEeCCCc
Confidence 689999999999966 4 46777776 57999999999998887767 8899999999987664
No 61
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.31 E-value=5.6e-07 Score=82.76 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~---Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++||.+|+.|.... .++++.+... ++.++||.++.+++.+.| |..++|+++|+ .+|++
T Consensus 41 f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 103 (140)
T 2dj1_A 41 FYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSASMLASKF--------DVSGYPTIKIL-KKGQA 103 (140)
T ss_dssp ECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred EECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcccHHHHHHC--------CCCccCeEEEE-ECCcE
Confidence 6899999999998654 3566666654 999999999998888888 88999999999 78983
No 62
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.31 E-value=4.1e-07 Score=80.40 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=49.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+ +.++..++||.++.+++.+.| |..|+|+.+|+ .+|+++..
T Consensus 28 f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 28 FHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADENSEISELF--------EISAVPYFIII-HKGTILKE 91 (112)
T ss_dssp EECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEecccCHHHHHHc--------CCCcccEEEEE-ECCEEEEE
Confidence 6899999999998643 3444443 457999999999999888888 88999999988 69998753
No 63
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.29 E-value=4.1e-07 Score=81.65 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=50.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.+. ++..++||.++.+++.+.| |..|+|+.+|+ .+|+.+..
T Consensus 38 F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 38 FSATWCGPSKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASEC--------EVKSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp EECTTCHHHHHHHHHH---HHHHTTCT-TSEEEEEETTTTHHHHHHT--------TCCSSSEEEEE-SSSSEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCccccEEEEE-eCCeEEEE
Confidence 6899999999998643 23444333 3899999999999999888 89999999998 78998744
No 64
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.29 E-value=3.8e-07 Score=76.18 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=48.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.+++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+.+| +|++
T Consensus 9 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 9 FTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMENPQKAMEY--------GIMAVPTIVI---NGDV 66 (85)
T ss_dssp EECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSSCCTTTST--------TTCCSSEEEE---TTEE
T ss_pred EeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCCHHHHHHC--------CCcccCEEEE---CCEE
Confidence 5899999999998643 4455666568999999999999998888 8899999988 8887
No 65
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.29 E-value=8e-07 Score=78.23 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccccccC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 92 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~p 92 (714)
.|++||++|+.|.... .++++.+ .++..++||.++.+++.+.| |..|+|+.+|+ .+|+++....-..
T Consensus 33 f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~~~g~~ 99 (113)
T 1ti3_A 33 FTASWCPPCKMIAPIF---AELAKKF-PNVTFLKVDVDELKAVAEEW--------NVEAMPTFIFL-KDGKLVDKTVGAD 99 (113)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHC-SSEEEEEEETTTCHHHHHHH--------HCSSTTEEEEE-ETTEEEEEEECCC
T ss_pred EECCCCHHHHHHHHHH---HHHHHhC-CCcEEEEEEccccHHHHHhC--------CCCcccEEEEE-eCCEEEEEEecCC
Confidence 5899999999998642 3444443 37899999999999998888 78899999988 7999874421123
Q ss_pred CCCCCCCccHHHHHHHHH
Q 005115 93 PEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 93 ~~~~~~~~~f~~~L~~i~ 110 (714)
+ ..+.+.|+++.
T Consensus 100 ~------~~l~~~l~~~~ 111 (113)
T 1ti3_A 100 K------DGLPTLVAKHA 111 (113)
T ss_dssp T------THHHHHHHHHH
T ss_pred H------HHHHHHHHHhh
Confidence 2 25777666543
No 66
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.28 E-value=5.2e-07 Score=79.94 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.+ +++..++||.++.+++.+.| +..|+|+.+|+. +|+++..
T Consensus 31 f~a~wC~~C~~~~p~l---~~l~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 31 FYATWCGPCKMIAPMI---EKFSEQY-PQADFYKLDVDELGDVAQKN--------EVSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEEE-TTEEEEE
T ss_pred EECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCccCEEEEEE-CCEEEEE
Confidence 6899999999999653 4444443 35888999999999998888 899999999997 9998754
No 67
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=5.8e-07 Score=81.37 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=51.4
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||++|+.|.... .++++.+.. ++..++||.++.+++.+.| +..++|+++|+ ++|++.
T Consensus 28 ~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 28 EFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQPGLSGRF--------IINALPTIYHC-KDGEFR 90 (126)
T ss_dssp EEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEE
T ss_pred EEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCHHHHHHc--------CCcccCEEEEE-eCCeEE
Confidence 35899999999998654 346666654 7999999999999988888 88999999999 899853
No 68
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.28 E-value=2.3e-07 Score=81.39 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||+.|+.|.... .++++.+ .++..++||.++.|++.+.| |..|+|+.+|+. +|+++..
T Consensus 25 f~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~G~~~~~ 86 (105)
T 4euy_A 25 IKTENCGVCDVMLRKV---NYVLENY-NYVEKIEILLQDMQEIAGRY--------AVFTGPTVLLFY-NGKEILR 86 (105)
T ss_dssp EEESSCHHHHHHHHHH---HHHHHTC-TTEEEEEEEECCC-----------------CCCCEEEEEE-TTEEEEE
T ss_pred EeCCCCcchHHHHHHH---HHHHHHc-CCceEEEEECCCCHHHHHhc--------CCCCCCEEEEEe-CCeEEEE
Confidence 6899999999998543 3444433 36899999999999999888 789999999995 9998754
No 69
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.26 E-value=6.2e-07 Score=78.62 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+ .++..++||.++.+++.+.| |..|+|+.+|+ .+|+.+.
T Consensus 28 f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~ 88 (107)
T 1gh2_A 28 FTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQCQGTAATN--------NISATPTFQFF-RNKVRID 88 (107)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECccCHHHHHhc--------CCCcccEEEEE-ECCeEEE
Confidence 6899999999998653 3455555 57999999999999988888 88999999888 7899874
No 70
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.25 E-value=8e-07 Score=82.99 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||.+|+.|.... .++++.++.++..++||.++.+++.+.| |..|+|+++|+ .+|+.+.
T Consensus 62 F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~ 123 (148)
T 3p2a_A 62 FWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEPALSTRF--------RIRSIPTIMLY-RNGKMID 123 (148)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCHHHHHHC--------CCCccCEEEEE-ECCeEEE
Confidence 6899999999998654 5677777778999999999999999888 89999999988 5999874
No 71
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.25 E-value=6.1e-07 Score=77.91 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|... | .++++.++.++..++||.++.+++.+.| |..|+|+.+|+ ++|+.+..
T Consensus 27 f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 89 (106)
T 1xwb_A 27 FFATWCGPCKMISPK-L--VELSTQFADNVVVLKVDVDECEDIAMEY--------NISSMPTFVFL-KNGVKVEE 89 (106)
T ss_dssp EECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCcCHHHHHhhHH-H--HHHHHHhCCCeEEEEEeccchHHHHHHc--------CCCcccEEEEE-cCCcEEEE
Confidence 589999999999865 3 4577777678999999999999988888 88999997777 78998743
No 72
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.25 E-value=7.9e-07 Score=84.47 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=55.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||++|+.|.... .++++.+..++..++||.++.|++.+.| |..++|+.+|+ .+|+++.
T Consensus 70 ~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~-~~G~~~~ 132 (155)
T 2ppt_A 70 DFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAHPAVAGRH--------RIQGIPAFILF-HKGRELA 132 (155)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTSTHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCccHHHHHHc--------CCCcCCEEEEE-eCCeEEE
Confidence 36899999999999654 5788888878999999999999998888 89999999998 7999874
No 73
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.24 E-value=8.6e-07 Score=76.27 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=50.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|... | .++++.+.. +..++||.++.+++.+.| |..++|+.+|+ ++|+++..
T Consensus 23 f~~~~C~~C~~~~~~-~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 84 (104)
T 2e0q_A 23 FWAEWCAPCLILAPI-I--EELAEDYPQ-VGFGKLNSDENPDIAARY--------GVMSLPTVIFF-KDGEPVDE 84 (104)
T ss_dssp EECTTCHHHHHHHHH-H--HHHHHHCTT-SEEEEEETTTCHHHHHHT--------TCCSSCEEEEE-ETTEEEEE
T ss_pred EECCCChhHHHHhHH-H--HHHHHHcCC-ceEEEEECCCCHHHHHhC--------CccccCEEEEE-ECCeEhhh
Confidence 579999999999864 3 346665554 899999999999888887 88999999999 89998743
No 74
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.23 E-value=8e-07 Score=77.16 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||+.|+.|.... .++++.+ +++..++||.++.+++.+.| |..|+|+.+|+ .+|+.+..
T Consensus 27 f~~~~C~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 27 FSATWCGPCKMIKPFF---HSLSEKY-SNVIFLEVDVDDCQDVASES--------EVKSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHS-TTSEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEEEEE
T ss_pred EECCCChhhHHHHHHH---HHHHHHc-cCeEEEEEEhhhhHHHHHHc--------CCCcCcEEEEE-ECCeEEEE
Confidence 6899999999998653 3455544 34899999999999988888 88999999999 78988743
No 75
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.23 E-value=5.2e-07 Score=81.30 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCC---CCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP---DLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p---~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.+ .++..++||.++.+++.+.| +..|+|+++|+.. +|+++..
T Consensus 30 f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 30 FFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKNGNAADAY--------GVSSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEEEEETTEEEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCCHHHHHhc--------CCCCCCEEEEEeCCCCcceEEEe
Confidence 6899999999998664 5677666 78999999999999988888 8899999999976 4887744
No 76
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.21 E-value=3.9e-07 Score=81.41 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |..++|+.+|+ ++|+++..
T Consensus 37 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~-~~g~~~~~ 99 (121)
T 2i1u_A 37 FWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTNPETARNF--------QVVSIPTLILF-KDGQPVKR 99 (121)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEEE-ECCEEEEE
Confidence 5899999999999764 6778778778999999999999888888 88999999888 59998743
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.20 E-value=9e-07 Score=91.81 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=55.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||++|+.|.... .++++.++.+++.++||.++.|++.+.| |+.|+|+++|+ .+|+++.
T Consensus 32 ~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~ 94 (287)
T 3qou_A 32 YFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDAEQMIAAQF--------GLRAIPTVYLF-QNGQPVD 94 (287)
T ss_dssp EEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTTCHHHHHTT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCccCHHHHHHc--------CCCCCCeEEEE-ECCEEEE
Confidence 36899999999998654 5777888878999999999999998888 89999999999 6999874
No 78
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.20 E-value=9.4e-07 Score=84.57 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=51.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
++|+||+.|+.|+.- | +++++.+...-+-+|||.||.|++.+.| |..+.||.+|+- +|+.+
T Consensus 48 F~A~WCgPCk~m~Pv-l--eelA~e~~~~v~f~kVDVDe~~e~a~~y--------~V~siPT~~fFk-~G~~v 108 (160)
T 2av4_A 48 FGHDYDPDCMKMDEL-L--YKVADDIKNFCVIYLVDITEVPDFNTMY--------ELYDPVSVMFFY-RNKHM 108 (160)
T ss_dssp EECTTSHHHHHHHHH-H--HHHHHHHTTTEEEEEEETTTCCTTTTTT--------TCCSSEEEEEEE-TTEEE
T ss_pred EECCCChhHHHHHHH-H--HHHHHHccCCcEEEEEECCCCHHHHHHc--------CCCCCCEEEEEE-CCEEE
Confidence 689999999999943 3 4577766556788999999999999999 899999998875 77776
No 79
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.19 E-value=1e-06 Score=72.38 Aligned_cols=62 Identities=15% Similarity=-0.061 Sum_probs=49.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 91 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~ 91 (714)
..|++||+.|+.|.... .++++.++.++..++|| .+++.+.| |..|+|+++| +|+++.. ++.
T Consensus 5 ~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~---~~~~~~~~--------~v~~~Pt~~~---~G~~~~~-G~~ 66 (77)
T 1ilo_A 5 QIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK---EMDQILEA--------GLTALPGLAV---DGELKIM-GRV 66 (77)
T ss_dssp EEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC---SHHHHHHH--------TCSSSSCEEE---TTEEEEC-SSC
T ss_pred EEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec---CHHHHHHC--------CCCcCCEEEE---CCEEEEc-CCC
Confidence 35899999999998654 56777777788899999 56677777 8999999998 8998765 444
No 80
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.19 E-value=1.4e-06 Score=76.80 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=48.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+. ++..++||.+ +.+++.+.| |..|+|+ +++.++|+++.
T Consensus 31 f~a~wC~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~~~~~~--------~v~~~Pt-~~~~~~G~~~~ 92 (111)
T 2pu9_C 31 MFTQWCGPSKAMAPKY---EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPT-FKILKENSVVG 92 (111)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSBSSE-EEEESSSSEEE
T ss_pred EECCcCHhHHHHCHHH---HHHHHHCC-CeEEEEEecCcchHHHHHHc--------CCCeeeE-EEEEeCCcEEE
Confidence 6899999999998653 34555443 5889999998 778888888 8999999 55668999874
No 81
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.19 E-value=1.6e-06 Score=83.11 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=46.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC--CCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~--~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|... |+.-....-.+-.||.|.+|.++.+ +...| +. .++|+++|++++|+++..
T Consensus 53 F~a~WC~~C~~~~p~-l~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~--------~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 53 IHKSWCGACKALKPK-FAESTEISELSHNFVMVNLEDEEEP-KDEDF--------SPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp EECTTCHHHHHHHHH-HHTCHHHHHHHTTSEEEEEEGGGSC-SCGGG--------CTTCSCSSEEEEECTTSCBCTT
T ss_pred EECCCCHHHHHHHHH-HHHHHHHhhcCCeEEEEEecCCchH-HHHHh--------cccCCcCCeEEEECCCCCEEEE
Confidence 689999999999974 5442222234568888888776542 44444 44 569999999999998854
No 82
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.19 E-value=4.6e-07 Score=80.46 Aligned_cols=68 Identities=24% Similarity=0.189 Sum_probs=50.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-ccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYF 91 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~-ty~ 91 (714)
.|++||++|+.|...- .++++.. .++..++||.++.+++.+.| |..|+|+++|+ .+|+++... +++
T Consensus 26 f~a~wC~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~v~~~~G~~ 92 (110)
T 2l6c_A 26 FHKNLCPHCKNMEKVL---DKFGARA-PQVAISSVDSEARPELMKEL--------GFERVPTLVFI-RDGKVAKVFSGIM 92 (110)
T ss_dssp EECSSCSTHHHHHHHH---HHHHTTC-TTSCEEEEEGGGCHHHHHHT--------TCCSSCEEEEE-ESSSEEEEEESCC
T ss_pred EECCCCHhHHHHHHHH---HHHHHHC-CCcEEEEEcCcCCHHHHHHc--------CCcccCEEEEE-ECCEEEEEEcCCC
Confidence 6899999999997542 1222221 25788899999999988888 88999999999 899988542 445
Q ss_pred CC
Q 005115 92 PP 93 (714)
Q Consensus 92 p~ 93 (714)
++
T Consensus 93 ~~ 94 (110)
T 2l6c_A 93 NP 94 (110)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 83
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.18 E-value=1.8e-06 Score=81.50 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=51.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||+||..|+.|.... .++++.++.++..++||.++.|++.+.| +..|+|+++ +..+|+++
T Consensus 30 F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~Pt~~-~~~~G~~v 90 (149)
T 3gix_A 30 FGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQTAVYTQYF--------DISYIPSTV-FFFNGQHM 90 (149)
T ss_dssp EECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTTCCHHHHHT--------TCCSSSEEE-EEETTEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCcCHHHHHHc--------CCCccCeEE-EEECCeEE
Confidence 6899999999998653 2456556666999999999999999988 889999999 56689988
No 84
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.17 E-value=1.1e-06 Score=79.95 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||.+|+.|.... .++++.+. ++..++||.++.+++.+.| |..|+|+.+|+ ++|+++..
T Consensus 45 f~a~wC~~C~~~~~~l---~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 45 FTASWCGPCRFIAPFF---ADLAKKLP-NVLFLKVDTDELKSVASDW--------AIQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHCS-SEEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHCC-CcEEEEEECccCHHHHHHc--------CCCccCEEEEE-ECCEEEEE
Confidence 6899999999998653 34554443 7899999999999988888 88999998887 79998753
No 85
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.17 E-value=1.2e-06 Score=82.65 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=50.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||.+|+.|.... .++++.. .++..++||.++.+++.+.| |..|+|+++|+. +|+++.
T Consensus 39 F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~G~~~~ 99 (153)
T 2wz9_A 39 FWAPWAPQCAQMNEVM---AELAKEL-PQVSFVKLEAEGVPEVSEKY--------EISSVPTFLFFK-NSQKID 99 (153)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSEEEEEE-TTEEEE
T ss_pred EECCCCHhHHHHHHHH---HHHHHHc-CCeEEEEEECCCCHHHHHHc--------CCCCCCEEEEEE-CCEEEE
Confidence 6899999999998653 3444443 57999999999999988888 899999999999 999874
No 86
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.16 E-value=1.3e-06 Score=78.35 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|... |+ ++++.+. ++..++||.++.+++.+.| |..|+|+.+|+ ++|+++.
T Consensus 41 f~~~~C~~C~~~~~~-l~--~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~ 101 (122)
T 2vlu_A 41 FTASWCGPCRIMAPV-FA--DLAKKFP-NAVFLKVDVDELKPIAEQF--------SVEAMPTFLFM-KEGDVKD 101 (122)
T ss_dssp EECTTCHHHHHHHHH-HH--HHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCCHHHHHHHHH-HH--HHHHHCC-CcEEEEEECCCCHHHHHHc--------CCCcccEEEEE-eCCEEEE
Confidence 589999999999863 42 4555544 3899999999999988888 89999998777 7999874
No 87
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.16 E-value=8.9e-07 Score=79.93 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+... +..++||.++.+++.+.| |..++|+.+|+ ++|+++..
T Consensus 40 f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 40 FWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQSQIAQEV--------GIRAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp EECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTCHHHHHHH--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCCHHHHHHc--------CCCcccEEEEE-ECCeEEee
Confidence 5899999999998653 3455555443 999999999999998888 88999999888 69998743
No 88
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.16 E-value=1.9e-06 Score=80.67 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=53.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| |..|+|+++|+ .+|+++.
T Consensus 29 ~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~Pt~~~~-~~G~~v~ 91 (142)
T 1qgv_A 29 RFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVPDFNKMY--------ELYDPCTVMFF-FRNKHIM 91 (142)
T ss_dssp EEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCCTTTTSS--------CSCSSCEEEEE-ETTEEEE
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCHHHHHHc--------CCCCCCEEEEE-ECCcEEE
Confidence 36899999999998654 3677777677999999999999998888 88999999998 5888774
No 89
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.16 E-value=1.9e-06 Score=85.55 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=54.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.++.++..++||.++.+++.+.| |+.|+|+++|+ ++|+.+.
T Consensus 121 F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~ 182 (210)
T 3apq_A 121 FYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPSLFIF-RSGMAAV 182 (210)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-CTTSCCE
T ss_pred EeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCccHHHHHHc--------CCCcCCeEEEE-ECCCcee
Confidence 6899999999999754 5788888878999999999999888887 89999999999 8999763
No 90
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.14 E-value=1.6e-06 Score=77.28 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|... +.++.++ ++..++||.++.+++.+.| |..|+|+.+|+ ++|+.+.
T Consensus 40 f~a~wC~~C~~~~~~------~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~ 99 (117)
T 2xc2_A 40 FFATWCGPCKTIAPL------FKELSEKYDAIFVKVDVDKLEETARKY--------NISAMPTFIAI-KNGEKVG 99 (117)
T ss_dssp EECTTCHHHHHHHHH------HHHHHTTSSSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCCHhHHHHhHH------HHHHHHHcCcEEEEEECCccHHHHHHc--------CCCccceEEEE-eCCcEEE
Confidence 589999999999854 3443333 6888999999999988888 88999998777 7999874
No 91
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.13 E-value=1.7e-06 Score=79.94 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..++|+++|+ ++|+++.
T Consensus 57 f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~ 118 (140)
T 1v98_A 57 FFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDEHPGLAARY--------GVRSVPTLVLF-RRGAPVA 118 (140)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCCCHHHHHHC--------CCCccCEEEEE-eCCcEEE
Confidence 5899999999998654 4677777778999999999999988888 88999999988 7999874
No 92
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.13 E-value=1.8e-06 Score=78.85 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||.+|+.|... | .++++.+ .++..++||.++.+++.+.| +..++|+.+|+ ++|+++.
T Consensus 44 F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~i~-~~G~~~~ 104 (125)
T 1r26_A 44 FTAVWCGPCKTIERP-M--EKIAYEF-PTVKFAKVDADNNSEIVSKC--------RVLQLPTFIIA-RSGKMLG 104 (125)
T ss_dssp EECTTCHHHHHTHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCcCHhHHHHHHH-H--HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCcccEEEEE-eCCeEEE
Confidence 589999999999865 3 3455554 47999999999999988888 88999998877 7999874
No 93
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.12 E-value=1.6e-06 Score=79.87 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=50.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+ .++..++||.++.+++.+.| |..|+|+++|+ ++|+++..
T Consensus 53 f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 53 FSARWCGPSRQIAPYY---IELSENY-PSLMFLVIDVDELSDFSASW--------EIKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCEESEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHC-CCCEEEEEeCcccHHHHHHc--------CCCcccEEEEE-cCCeEEEE
Confidence 6899999999998653 3444444 46899999999999988888 88999999888 89998743
No 94
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.11 E-value=2.4e-06 Score=77.14 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=49.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||++|+.|.... .++++.+. ++..++||.++.+++.+.| |..++|+.+|+ ++|+++..
T Consensus 42 ~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 42 DFTASWCGPCRFIAPVF---AEYAKKFP-GAVFLKVDVDELKEVAEKY--------NVEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp ECCSSSCSCSSSSHHHH---HHHHHHCT-TBCCEECCTTTSGGGHHHH--------TCCSSCCCCBC-TTTTCCBC
T ss_pred EEECCCChhHHHHHHHH---HHHHHHCC-CCEEEEEeccchHHHHHHc--------CCCccceEEEE-eCCeEEEE
Confidence 36899999999998542 23444332 6888999999999999988 88999998877 89998743
No 95
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.11 E-value=1.9e-06 Score=76.40 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+ +++..++||.++.+++.+.| |..|+|+.+|+ ++|+++.
T Consensus 35 f~~~~C~~C~~~~~~l---~~~~~~~-~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~ 95 (118)
T 2vm1_A 35 FTASWCGPCRVIAPVF---AEYAKKF-PGAIFLKVDVDELKDVAEAY--------NVEAMPTFLFI-KDGEKVD 95 (118)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSBSEEEEE-ETTEEEE
T ss_pred EECCCCHhHHHHhHHH---HHHHHHC-CCcEEEEEEcccCHHHHHHc--------CCCcCcEEEEE-eCCeEEE
Confidence 5899999999998542 3344433 27899999999999888888 88999998888 7999874
No 96
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.10 E-value=2.8e-06 Score=75.11 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=50.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||++|+.|.... .++++.+. .+++.++||.++.+++.+.| |..|+|+.+|+ ++|+.+
T Consensus 31 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 31 FYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEESDLAQQY--------GVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp EECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCCSSHHHH--------TCCSSSEEEEE-ESSCSS
T ss_pred EECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCHHHHHHC--------CCCcccEEEEE-eCCCcC
Confidence 5899999999998653 23555554 46899999999999999988 88999999999 688865
No 97
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.10 E-value=1.1e-06 Score=80.99 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=47.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEe-CCCCc--ccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL-SPDLK--PLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl-~p~g~--p~~ 86 (714)
..|++||++|+.|... +.++.++ +++.++||.++.+++.+.| |..|+|+++|+ +++|+ ++.
T Consensus 46 ~F~a~wC~~C~~~~p~------l~~l~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~~g~g~~~~ 110 (133)
T 3cxg_A 46 KFGAVWCKPCNKIKEY------FKNQLNYYYVTLVDIDVDIHPKLNDQH--------NIKALPTFEFYFNLNNEWVLVH 110 (133)
T ss_dssp EEECTTCHHHHHTHHH------HHGGGGTEECEEEEEETTTCHHHHHHT--------TCCSSSEEEEEEEETTEEEEEE
T ss_pred EEECCCCHHHHHHHHH------HHHHHHhcCEEEEEEeccchHHHHHhc--------CCCCCCEEEEEEecCCCeEEEE
Confidence 3689999999999643 3332222 4788999999999988888 88999999999 56776 553
No 98
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.09 E-value=1.4e-06 Score=78.04 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||.+|+.|.... .++++.+. ++..++||.++.+++.+.| |..|+|+.+|+ ++|+++.
T Consensus 37 F~a~wC~~C~~~~p~l---~~~~~~~~-~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~ 97 (114)
T 2oe3_A 37 FYATWCGPCKMMQPHL---TKLIQAYP-DVRFVKCDVDESPDIAKEC--------EVTAMPTFVLG-KDGQLIG 97 (114)
T ss_dssp EECTTCHHHHHTHHHH---HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSBSEEEEE-ETTEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHC--------CCCcccEEEEE-eCCeEEE
Confidence 5899999999998653 34555443 3888999999999888888 88999998887 8999874
No 99
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=97.36 E-value=4.3e-07 Score=78.45 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=52.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++.+..++..++||.++.+++.+.| |..++|+.+|+ ++|+.+..
T Consensus 26 f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 26 FWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVDENPNTAAQY--------GIRSIPTLLLF-KNGQVVDR 88 (106)
Confidence 5899999999998643 4566677667888999999999888888 78899999999 89998743
No 100
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.08 E-value=2.8e-06 Score=73.39 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|... | .++++.+. ++..++||.++.+++.+.| |..++|+.+|+. +|+++..
T Consensus 26 f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~-~g~~~~~ 87 (104)
T 2vim_A 26 FFAQWCGPCRNIAPK-V--EALAKEIP-EVEFAKVDVDQNEEAAAKY--------SVTAMPTFVFIK-DGKEVDR 87 (104)
T ss_dssp EECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSEEEEEE-TTEEEEE
T ss_pred EECCCCHHHHHhhHH-H--HHHHHHCC-CCEEEEEeccCCHHHHHHc--------CCccccEEEEEe-CCcEEEE
Confidence 689999999999865 3 34555443 7899999999999888887 889999988775 8998743
No 101
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.07 E-value=3.2e-06 Score=76.07 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=47.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||++|+.|.... .++++... ++..++||.+ +.+++.+.| |..|+|+.+|. ++|+++..
T Consensus 44 f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 44 MFTQWCGPCKAMAPKY---EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSSSSEEEEE-ETTEEEEE
T ss_pred EECCcCHhHHHHhHHH---HHHHHHCC-CCEEEEEecCcchHHHHHHc--------CCCeeeEEEEE-eCCcEEEE
Confidence 5899999999998653 34554443 5888999997 678888888 89999995554 89998743
No 102
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.05 E-value=3.4e-06 Score=73.74 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc------ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~------~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|... +.++..+ ++..++||.++.+++.+.| |..++|+.+|+ ++|+.+.
T Consensus 28 f~~~~C~~C~~~~~~------~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~g~~~~ 92 (111)
T 3uvt_A 28 FYAPWCGHCKTLAPT------WEELSKKEFPGLAGVKIAEVDCTAERNICSKY--------SVRGYPTLLLF-RGGKKVS 92 (111)
T ss_dssp EECSSCHHHHHHHHH------HHHHHTCCCCC-CCEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEEE
T ss_pred EECCCChhHHHhhHH------HHHHHHHhhccCCceEEEEEeccccHhHHHhc--------CCCcccEEEEE-eCCcEEE
Confidence 589999999999853 4444443 6888899999999988888 88999998888 7888764
No 103
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.04 E-value=4.9e-06 Score=75.45 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-----hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-----NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-----n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.|++||+.|+.|... |+ ++++.+ +.+++.++||.++.+++.+.| ++.|+|+++|+.+.++
T Consensus 40 F~a~wC~~C~~~~p~-~~--~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~g~~ 104 (127)
T 3h79_A 40 YYVPWSRHSVAAMRL-WD--DLSMSQSQKRNHLTFVAARIDGEKYPDVIERM--------RVSGFPTMRYYTRIDK 104 (127)
T ss_dssp EECTTCHHHHHHHHH-HH--HHHHHHHTSTTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSCS
T ss_pred EECCccHHHHHHhHH-HH--HHHHHHHhcccCCCeEEEEEEccccHhHHHhc--------CCccCCEEEEEeCCCC
Confidence 689999999999864 32 344333 356999999999999998888 8999999999987665
No 104
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.5e-06 Score=77.61 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=55.6
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCC------CcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG------GWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~------g~P~~vfl~p~g~p 84 (714)
..|++||+.|+.|.... .++++.++. ++..++||.++.+++.+.| +.. ++|+++|+ .+|++
T Consensus 32 ~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~~~~~~~Pt~~~~-~~G~~ 99 (137)
T 2dj0_A 32 EFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGRYTDVSTRY--------KVSTSPLTKQLPTLILF-QGGKE 99 (137)
T ss_dssp EECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTTCHHHHHHT--------TCCCCSSSSCSSEEEEE-SSSSE
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCccCHHHHHHc--------cCcccCCcCCCCEEEEE-ECCEE
Confidence 46899999999998653 467777763 8999999999999988887 666 99999999 78998
Q ss_pred ccc-ccccCCC
Q 005115 85 LMG-GTYFPPE 94 (714)
Q Consensus 85 ~~~-~ty~p~~ 94 (714)
+.. .++.+.+
T Consensus 100 ~~~~~G~~~~~ 110 (137)
T 2dj0_A 100 AMRRPQIDKKG 110 (137)
T ss_dssp EEEESCBCSSS
T ss_pred EEEecCcCchH
Confidence 743 2344443
No 105
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.03 E-value=3.7e-06 Score=75.05 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-----ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-----~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.|++||++|+.|... | .++++.+.. ++..++||.++.+ +. + +..++|+++|+.++|+
T Consensus 32 f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~-------~---~v~~~Pt~~~~~~~~~ 93 (121)
T 2djj_A 32 FYAPWCGHCKALAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND-VP-------D---EIQGFPTIKLYPAGAK 93 (121)
T ss_dssp EECSSCTTHHHHHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC-CS-------S---CCSSSSEEEEECSSCT
T ss_pred EECCCCHhHHHhhHH-H--HHHHHHHhhcccCCceEEEEEECcccc-cc-------c---ccCcCCeEEEEeCcCC
Confidence 689999999999975 4 478888876 8999999998876 21 2 7889999999998877
No 106
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.03 E-value=2.4e-06 Score=75.65 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.|.... .++++.. +++..++||.++.+++.+.| |..|+|+.+|+ .+|+.+..
T Consensus 33 f~a~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 33 FFAEWCGPCKRIAPFY---EECSKTY-TKMVFIKVDVDEVSEVTEKE--------NITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTTHHHHHHT--------TCCSSSEEEEE-ETTEEEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHc-CCCEEEEEECCCCHHHHHHc--------CCCcccEEEEE-ECCcEEEE
Confidence 5899999999998654 4455544 36999999999999888887 88999997777 59998743
No 107
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.00 E-value=3.4e-06 Score=84.62 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||.+|+.|.... .++++.++.++..++||.++.+++.+.| |+.|+|+.+|+. +|+.+.
T Consensus 37 F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~~~-~G~~~~ 98 (222)
T 3dxb_A 37 FWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLFK-NGEVAA 98 (222)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCTTTGGGG--------TCCSBSEEEEEE-TTEEEE
T ss_pred EECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCHHHHHHc--------CCCcCCEEEEEE-CCeEEE
Confidence 6899999999998755 6788888888999999999999999888 899999999885 888874
No 108
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=97.92 E-value=2.1e-06 Score=79.16 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=45.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcC---------CCCccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDR---------EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~---------ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
.|++||..|+.|.. .+.++.++ .+..++||. ++.+++.+.| |..|+|+.+|+. +|
T Consensus 38 F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~--------~v~~~Pt~~~~~-~G 102 (135)
T 3emx_A 38 VYSKTCPHCHRDWP------QLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKA--------GVEGTPTLVFYK-EG 102 (135)
T ss_dssp EEETTCHHHHHHHH------HHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHH--------TCCSSSEEEEEE-TT
T ss_pred EECCcCHhhhHhCh------hHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHc--------CCceeCeEEEEc-CC
Confidence 58999999999974 34444443 266777887 4444555555 899999888887 99
Q ss_pred cccccc-cccC
Q 005115 83 KPLMGG-TYFP 92 (714)
Q Consensus 83 ~p~~~~-ty~p 92 (714)
+++... ++.+
T Consensus 103 ~~v~~~~G~~~ 113 (135)
T 3emx_A 103 RIVDKLVGATP 113 (135)
T ss_dssp EEEEEEESCCC
T ss_pred EEEEEEeCCCC
Confidence 988542 4444
No 109
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=97.90 E-value=1e-05 Score=76.67 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=44.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc-----------------------cHHHHHHHHHHHhcCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-----------------------DVDKVYMTYVQALYGG 69 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p-----------------------~i~~~y~~~~q~~~g~ 69 (714)
.+++||++|+.|.. .+.++.++++..|.|+.++.+ .+.+.| |.
T Consensus 58 F~a~~C~~C~~~~~------~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~v 123 (168)
T 2b1k_A 58 VWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDL--------GV 123 (168)
T ss_dssp EECTTCHHHHHHHH------HHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHH--------TC
T ss_pred EECCCCHHHHHHHH------HHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHc--------Cc
Confidence 57999999999874 456666566666666644332 233333 78
Q ss_pred CCcCceEEeCCCCccccc
Q 005115 70 GGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 70 ~g~P~~vfl~p~g~p~~~ 87 (714)
.|+|++++++++|++++.
T Consensus 124 ~~~P~~~lid~~G~i~~~ 141 (168)
T 2b1k_A 124 YGAPETFLIDGNGIIRYR 141 (168)
T ss_dssp CSSSEEEEECTTSBEEEE
T ss_pred cccCEEEEECCCCeEEEE
Confidence 899999999999999854
No 110
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=97.89 E-value=1.4e-05 Score=73.36 Aligned_cols=89 Identities=7% Similarity=-0.031 Sum_probs=56.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH-----------------HHHhcCCCCcCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY-----------------VQALYGGGGWPL 74 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~-----------------~q~~~g~~g~P~ 74 (714)
.+++||+.|+.|....-+ +.+.+.+ ++..|.|+.++.++--+.|+.- +....|..++|+
T Consensus 38 f~~~~C~~C~~~~~~l~~---l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~ 114 (148)
T 3hcz_A 38 FWDSQCGHCQQETPKLYD---WWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPV 114 (148)
T ss_dssp EECGGGCTTCSHHHHHHH---HHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCE
T ss_pred EECCCCccHHHHHHHHHH---HHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCE
Confidence 579999999998754222 4444443 4777777777666522222210 111237889999
Q ss_pred eEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHHH
Q 005115 75 SVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 112 (714)
Q Consensus 75 ~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~~ 112 (714)
+++++++|+++.... . .+.+.++++.+.+.
T Consensus 115 ~~lid~~G~i~~~~~--g------~~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 115 LYVLDKNKVIIAKRI--G------YENLDDFLVQYEKS 144 (148)
T ss_dssp EEEECTTCBEEEESC--C------GGGHHHHHHHHHHH
T ss_pred EEEECCCCcEEEecC--C------HHHHHHHHHHHHHH
Confidence 999999999986531 1 23577777766554
No 111
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=97.89 E-value=2.1e-06 Score=76.81 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=41.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||++|+.|.... .++++.++..++.| |.++..+++.. ...++. .|..|+|+++|+. +|+.+.
T Consensus 35 ~f~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~--~~~~~~~~~~~-~~~~~~-~~i~~~Pt~~~~~-~G~~~~ 101 (118)
T 1zma_A 35 FIGRKTCPYCRKFAGTL---SGVVAETKAHIYFI--NSEEPSQLNDL-QAFRSR-YGIPTVPGFVHIT-DGQINV 101 (118)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHHCCCCEEE--ETTCGGGHHHH-HHHHHH-HTCCSSCEEEEEE-TTEEEE
T ss_pred EEECCCCccHHHHHHHH---HHHHHhcCCeEEEE--ECCCcCcHHHH-HHHHHH-cCCCCCCeEEEEE-CCEEEE
Confidence 36899999999998553 24555454455555 44433333321 111111 2889999999984 888773
No 112
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=97.89 E-value=9.4e-06 Score=69.99 Aligned_cols=55 Identities=13% Similarity=0.002 Sum_probs=42.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.|..- .+.++..+ .++||.++.|++.+.| |.. +|+.+| .+|+++.
T Consensus 6 f~a~~C~~C~~~~~~-------L~~~~~~~-~~~vdid~~~~l~~~~--------g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 6 YQRDDCHLCDQAVEA-------LAQARAGA-FFSVFIDDDAALESAY--------GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp EECSSCHHHHHHHHH-------HHHTTCCC-EEEEECTTCHHHHHHH--------TTT-CSEEEC--TTCCEEE
T ss_pred EECCCCchHHHHHHH-------HHHHHHhh-eEEEECCCCHHHHHHh--------CCC-cCeEEE--ECCEEEe
Confidence 578999999998843 33444443 3789999999988888 776 998877 7899985
No 113
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=97.88 E-value=6.1e-06 Score=79.82 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=59.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 91 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~ 91 (714)
..+|+||+.|+.|...- .++++. +.++..++||+++.|++.+.|.. .|..++|+++|++.+|+++...+..
T Consensus 60 ~F~A~WC~pC~~~~P~l---~~l~~~-~~~v~~~~v~~d~~~~~~~~~~~-----~~v~~iPt~i~~~~~G~~~~~~g~~ 130 (167)
T 1z6n_A 60 VAGEMWCPDCQINLAAL---DFAQRL-QPNIELAIISKGRAEDDLRQRLA-----LERIAIPLVLVLDEEFNLLGRFVER 130 (167)
T ss_dssp EECCTTCHHHHHHHHHH---HHHHHH-CTTEEEEEECHHHHHHHTTTTTT-----CSSCCSSEEEEECTTCCEEEEEESS
T ss_pred EEECCCChhHHHHHHHH---HHHHHH-CCCcEEEEEECCCCHHHHHHHHH-----cCCCCcCeEEEECCCCCEEEEEcCC
Confidence 46899999999987432 124332 34678889999988887766621 2578999999999999986432323
Q ss_pred CCCCCCCCccHHHHHHHHHHHHhh
Q 005115 92 PPEDKYGRPGFKTILRKVKDAWDK 115 (714)
Q Consensus 92 p~~~~~~~~~f~~~L~~i~~~w~~ 115 (714)
|. ...+.+...+..|.+
T Consensus 131 p~-------~~~~~i~~~~~~~~~ 147 (167)
T 1z6n_A 131 PQ-------AVLDGGPQALAAYKA 147 (167)
T ss_dssp CH-------HHHHHCHHHHHHHHT
T ss_pred CH-------HHHHhHHHHHHHHHc
Confidence 42 355555566666643
No 114
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=97.87 E-value=8.5e-05 Score=84.56 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=63.8
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCCCCCc
Q 005115 411 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKAPGFL 487 (714)
Q Consensus 411 t~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~---~g~~~~~~~l 487 (714)
|++++.++.|||.|++++++- ...|. .++|+.|+++++|+.++... +++.-. .|.-...++.
T Consensus 242 t~~~~~~AAalA~as~vf~~~--D~~yA--------~~~L~~A~~~~~fa~~~~~~-----~~~~~~~~~~~~Y~~~~~~ 306 (537)
T 3gzk_A 242 YAATATFCAAMAHAALVYRPF--DPALS--------SCCADAARRAYAWLGAHEMQ-----PFHNPDGILTGEYGDAELR 306 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHHHHHTSCCC-----CCCCCTTCCSCCCCCSCCH
T ss_pred CcHHHHHHHHHHHHHHhhccc--CHHHH--------HHHHHHHHHHHHHHHhcccc-----cccCCcccccCCcCCCccc
Confidence 567899999999999999861 00111 57899999999999987431 110000 0000113566
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQN 518 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~ 518 (714)
|+ +++|.++||++|||+.||+.|+++..
T Consensus 307 De---l~wAA~~Ly~aTgd~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 307 DE---LLWASCALLRMTGDSAWARVCEPLLD 334 (537)
T ss_dssp HH---HHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Confidence 66 68899999999999999999998764
No 115
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=97.87 E-value=9.2e-06 Score=76.09 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=57.3
Q ss_pred cCCCCCC--hhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-
Q 005115 12 TRRTHFL--IKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG- 88 (714)
Q Consensus 12 ~~~t~wC--~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~- 88 (714)
.++++|| +.|+.|.--. +++++.+...+..+|||.|+.|++...| |+.++||.+|+. ||+++...
T Consensus 39 dF~A~wCr~gpCk~iaPvl---eela~e~~~~v~~~KVdvDe~~~la~~y--------gV~siPTlilFk-dG~~v~~~v 106 (137)
T 2qsi_A 39 FFRGDAVRFPEAADLAVVL---PELINAFPGRLVAAEVAAEAERGLMARF--------GVAVCPSLAVVQ-PERTLGVIA 106 (137)
T ss_dssp EECCCTTTCTTHHHHHHHH---HHHHHTSTTTEEEEEECGGGHHHHHHHH--------TCCSSSEEEEEE-CCEEEEEEE
T ss_pred EEeCCccCCCchhhHHhHH---HHHHHHccCCcEEEEEECCCCHHHHHHc--------CCccCCEEEEEE-CCEEEEEEe
Confidence 3689999 9999999642 5566666667899999999999999999 999999999995 99998553
Q ss_pred cccCC
Q 005115 89 TYFPP 93 (714)
Q Consensus 89 ty~p~ 93 (714)
++.|+
T Consensus 107 G~~~k 111 (137)
T 2qsi_A 107 KIQDW 111 (137)
T ss_dssp SCCCH
T ss_pred CCCCH
Confidence 44553
No 116
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=97.86 E-value=8.4e-06 Score=73.12 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC-----CCccHHHHHHH---------------HHHHhcCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMT---------------YVQALYGGGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e-----e~p~i~~~y~~---------------~~q~~~g~~g~ 72 (714)
.+++||+.|+.|..+. .++.+..++++..|.|+.+ +.++.-+.|.. .+....|..|+
T Consensus 29 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 105 (138)
T 4evm_A 29 FWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSY 105 (138)
T ss_dssp ECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSS
T ss_pred EEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcCcccC
Confidence 6899999999988663 4455556667888888421 11111111100 01112378999
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+.+..
T Consensus 106 P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 106 PTQAFIDKEGKLVKT 120 (138)
T ss_dssp SEEEEECTTCCEEEE
T ss_pred CeEEEECCCCcEEEe
Confidence 999999999998854
No 117
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.80 E-value=1.2e-05 Score=79.93 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=51.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln----~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+. .++..++||.++.+++.+.| |..|+|+++|+ ++|+.+.
T Consensus 141 F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G~~~~ 206 (226)
T 1a8l_A 141 FVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIEYPEWADQY--------NVMAVPKIVIQ-VNGEDRV 206 (226)
T ss_dssp EECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHT--------TCCSSCEEEEE-ETTEEEE
T ss_pred EeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcccCHHHHHhC--------CCcccCeEEEE-eCCceeE
Confidence 7899999999998653 45666665 48999999999999988888 89999998777 5888763
No 118
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=97.80 E-value=2.9e-05 Score=70.96 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=44.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC---------------------------CccHHHHHHHHHHH
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE---------------------------RPDVDKVYMTYVQA 65 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee---------------------------~p~i~~~y~~~~q~ 65 (714)
.+++||..|+.|.... .++.+.+.+++..|.|+.+. ..++.+.|
T Consensus 36 f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------ 106 (148)
T 2b5x_A 36 FWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF------ 106 (148)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT------
T ss_pred EEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh------
Confidence 5899999999987553 24555555446666666432 22334444
Q ss_pred hcCCCCcCceEEeCCCCccccc
Q 005115 66 LYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 66 ~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
|..|+|++++++++|+++..
T Consensus 107 --~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 107 --ENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp --CCCCSSEEEEECTTCBEEEE
T ss_pred --CCCCCCEEEEECCCCcEEEE
Confidence 88999999999999998864
No 119
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=97.80 E-value=0.00053 Score=75.51 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=152.1
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHh
Q 005115 247 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDIL 325 (714)
Q Consensus 247 LyD-NA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L 325 (714)
+|+ .+-++.+|+..|++|+|+.|++.|.++++.+.+.+.+..-+|+. |.-|..|+ ...+.+.+
T Consensus 73 lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~--------------G~aG~l~~--l~~ly~~~ 136 (411)
T 3e6u_A 73 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC--------------GDAGPLAV--AAVLYHKM 136 (411)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTT--------------STHHHHHH--HHHHHHHT
T ss_pred eeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCcccc--------------CcHHHHHH--HHHHHHHh
Confidence 455 78889999999999999999999999999998876543323332 23344443 33444555
Q ss_pred hhh--H-HHHHHHhcc---cCCCCcCCCCCCCCCCccCCcc-eecccCCchHHHHhcC---CCHHHHHHHHHHHHHHHHh
Q 005115 326 GEH--A-ILFKEHYYL---KPTGNCDLSRMSDPHNEFKGKN-VLIELNDSSASASKLG---MPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 326 ~~~--~-~~~~~~~~v---~~~Gn~~~~~~~d~~~~~eg~n-iL~~~~~~~~~a~~~g---~~~~~~~~~l~~~r~~L~~ 395 (714)
++. + +++.+.-.+ ..+.+ .+.+.|.. ++.. .-.+.+..+ +....+.+..+.+.+....
T Consensus 137 g~~~~a~~~~~~l~~~~~~~~~~~---------~dll~G~AG~l~a---Ll~L~~~~~~~~~~~~~i~~i~~~ii~~g~~ 204 (411)
T 3e6u_A 137 NNEKQAEDCITRLIHLNKIDPHAP---------NEMLYGRIGYIYA---LLFVNKNFGVEKIPQSHIQQICETILTSGEN 204 (411)
T ss_dssp TCHHHHHHHHHHHHGGGGGCTTCC---------SSTTTSHHHHHHH---HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCC---------hhhhcCcHHHHHH---HHHHHHHcCCccchHHHHHHHHHHHHHHHHH
Confidence 532 1 122222121 11111 11122321 1100 001111111 1111122222222111110
Q ss_pred -hhhcC---CCCC---CCcchhhch---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 005115 396 -VRSKR---PRPH---LDDKVIVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 465 (714)
Q Consensus 396 -~R~~R---~~P~---~DdKilt~W---Nal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~ 465 (714)
.+.++ ..|. -.++..++| .+=++.+|+++++.+++ +++++.++++.+++.+...
T Consensus 205 ~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~----------------~~~~~~i~~~l~~l~~~~~ 268 (411)
T 3e6u_A 205 LARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQ----------------GKLHSLVKPSVDYVCQLKF 268 (411)
T ss_dssp HHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCH----------------HHHHHTHHHHHHHHHHTCC
T ss_pred HHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHhhc
Confidence 11111 2221 012222322 12246678888877776 7899999999999998765
Q ss_pred ccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccc
Q 005115 466 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 545 (714)
Q Consensus 466 d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r 545 (714)
. +|.+..+..++......+...-+=.+.+++.++++++|++|++.|++..+.+.+. | +.. .
T Consensus 269 ~--~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------g-~~~---~------- 329 (411)
T 3e6u_A 269 P--SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQY------G-LLK---K------- 329 (411)
T ss_dssp T--TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------C-SBT---T-------
T ss_pred c--CCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------C-ccC---C-------
Confidence 3 3433221112222334666777788899999999999999999999887766542 1 100 0
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 005115 546 VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVF 591 (714)
Q Consensus 546 ~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~ 591 (714)
+...=-|.|=.+..|++++..|++ ++|+++|.+++...
T Consensus 330 -----~~~lChG~aG~~~~ll~~~~~t~~---~~~~~~A~~~~~~~ 367 (411)
T 3e6u_A 330 -----GYGLCHGSAGNAYAFLTLYNLTQD---MKYLYRACKFAEWC 367 (411)
T ss_dssp -----CSCSTTSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred -----CCceecChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 012233556667789999999996 78999998876654
No 120
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=97.80 E-value=3.4e-05 Score=71.36 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=45.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------HHHHhcCCCCcCceE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT---------------YVQALYGGGGWPLSV 76 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~---------------~~q~~~g~~g~P~~v 76 (714)
.+++||.+|+.+.... .++.+.+. +++..|.|+.+..++.-+.|.. .+....|..++|+++
T Consensus 37 f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 113 (152)
T 2lja_A 37 VWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFI 113 (152)
T ss_dssp ECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEE
T ss_pred EECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEE
Confidence 5899999999887542 23344443 3566677776655422111110 111223788999999
Q ss_pred EeCCCCccccc
Q 005115 77 FLSPDLKPLMG 87 (714)
Q Consensus 77 fl~p~g~p~~~ 87 (714)
|++++|+.++.
T Consensus 114 lid~~G~i~~~ 124 (152)
T 2lja_A 114 LLDRDGKIISA 124 (152)
T ss_dssp EECTTSCEEES
T ss_pred EECCCCeEEEc
Confidence 99999999865
No 121
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=97.78 E-value=0.00013 Score=80.89 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=139.0
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=.+.+---|-|....|+|.|.+ +|... +-+..++.++-.++||++ |+.++|+||.-. |.+
T Consensus 47 Dl~GGwy----DAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk-~~~~~g~~y~qVgd~~ 121 (433)
T 1ks8_A 47 DLTGGYF----DAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIK-AHTSQNEFYGQVGQGD 121 (433)
T ss_dssp BCCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH-HCCBTTBEEEEESCHH
T ss_pred cCCCcee----ECCCCCeeccchHHHHHHHHHHHHHhHHhhhcCCchHHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCC
Confidence 3678887 4433455556788888889888877 44433 448899999999999998 777788888743 211
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.+ + ..|..-| + +. ..+.+..+.
T Consensus 122 ~D-------h-----~~w~~Pe-------~--------------------~~------~~R~~y~~~------------- 143 (433)
T 1ks8_A 122 AD-------H-----AFWGRPE-------D--------------------MT------MARPAYKID------------- 143 (433)
T ss_dssp HH-------H-----TCCSCGG-------G--------------------CC------SCCCEEEEC-------------
T ss_pred cC-------C-----cccCCHh-------h--------------------CC------CCCceeecc-------------
Confidence 10 0 0121100 0 00 001110000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
..+|. |+-.+.++.|||.|++++++. ...|. .++|+.|+++.+
T Consensus 144 ---------------------~~~pg------s~~a~~~AAalA~as~vfk~~--D~~yA--------~~~L~~A~~~~~ 186 (433)
T 1ks8_A 144 ---------------------TSRPG------SDLAGETAAALAAASIVFRNV--DGTYS--------NNLLTHARQLFD 186 (433)
T ss_dssp ---------------------SSSCC------HHHHHHHHHHHHHHHHHTTTT--CHHHH--------HHHHHHHHHHHH
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHH
Confidence 01122 334588999999999999751 11111 578999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
|..++- |.+..+...+.. ...++.|++ ++|.++||.+|||+.||+.|++....+... ...+.|.+.
T Consensus 187 fa~~~~-----~~y~~~~~~~~~~Y~ss~~~DE~---~WAAa~Ly~aTgd~~Yl~~~~~~~~~~~~~---~~~~~~~Wd- 254 (433)
T 1ks8_A 187 FANNYR-----GKYSDSITDARNFYASADYRDEL---VWAAAWLYRATNDNTYLNTAESLYDEFGLQ---NWGGGLNWD- 254 (433)
T ss_dssp HHHHSC-----CCHHHHSGGGGGTSCCCCTHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHHTTGG---GSCCCCCSS-
T ss_pred HHHHCC-----CcccCCCCcCCCCCCCCCcccHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCcC---cCcCCcCcc-
Confidence 998762 111100000000 113444444 788999999999999999999865442110 011122221
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 005115 537 GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 601 (714)
Q Consensus 537 ~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~ 601 (714)
+. . +...+.|+.+++. ..|++.++..+..+...+...|.+
T Consensus 255 ---------------~~--~-----~g~~~lla~~~~~---~~~~~~~~~~~~~~~~~~~~tp~G 294 (433)
T 1ks8_A 255 ---------------SK--V-----SGVQVLLAKLTNK---QAYKDTVQSYVNYLINNQQKTPKG 294 (433)
T ss_dssp ---------------CC--H-----HHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTSCBCTTS
T ss_pred ---------------ch--h-----hHHHHHHhhccCh---HHHHHHHHHHHHHHHhcCCcCCCC
Confidence 11 0 1123335566653 678888888877776655555554
No 122
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=97.78 E-value=0.00034 Score=77.77 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=112.4
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHH---HHccC-ChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~A---y~~t~-d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=.+-+---|-|....|++.|.+. |..++ -+..++.++-.++||++ |...+|+||.-. |.+
T Consensus 49 Dl~GGwy----DAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~D~llk-~~~~~~~~y~qVgd~~ 123 (441)
T 1ia6_A 49 DLTGGYH----DAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVGEGN 123 (441)
T ss_dssp CCCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHH-TCCSTTCEEEEESCHH
T ss_pred cCCCCee----eCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCC
Confidence 4778888 45434555567888889999888873 54444 48889999999999998 555557888743 211
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
++ + ..|..-|. + .
T Consensus 124 ~D------h------~~w~~Pe~---------------------------~-------~--------------------- 136 (441)
T 1ia6_A 124 AD------H------TYWGAPEE---------------------------Q-------T--------------------- 136 (441)
T ss_dssp HH------T------TCCSCGGG---------------------------C-------C---------------------
T ss_pred cc------c------cccCChhh---------------------------C-------C---------------------
Confidence 10 0 01221100 0 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCC-CC-cchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPH-LD-DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESA 456 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~-~D-dKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~ 456 (714)
..|+.++ ++ ..--|+..+.++.|||.|++++++. ...|. .++|+.|+++
T Consensus 137 -------------------~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~--D~~yA--------~~~L~~A~~~ 187 (441)
T 1ia6_A 137 -------------------GQRPSLYKADPSSPASDILSETSAALTLMYLNYKNI--DSAYA--------TKCLNAAKEL 187 (441)
T ss_dssp -------------------SCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHH
T ss_pred -------------------CCCceeeEeCCCCCccHHHHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHH
Confidence 0011100 01 0112455688999999999999751 11111 5789999999
Q ss_pred HHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005115 457 ASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 517 (714)
Q Consensus 457 ~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~ 517 (714)
++|..++--....+.+| ...++.|++ ++|.++||.+|||+.||+.|++..
T Consensus 188 ~~fa~~~~g~~~~~~~Y--------~ss~~~DE~---~WAAa~Ly~aTgd~~Yl~~a~~~~ 237 (441)
T 1ia6_A 188 YAMGKANQGVGNGQSFY--------QATSFGDDL---AWAATWLYTATNDSTYITDAEQFI 237 (441)
T ss_dssp HHHHHHSCSCCCCTTTS--------CCCCSHHHH---HHHHHHHHHHHCCTHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCC--------CCCCchhHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998863111111111 113444554 588999999999999999998754
No 123
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=97.78 E-value=1.3e-05 Score=73.33 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH--------------HHH--hcCCCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQA--LYGGGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~~--------------~q~--~~g~~g~P~~ 75 (714)
.+++||+.|+.+....-+.+++.+.+. +++..|.|+.++.++.-+.|..- +.. ..|..++|++
T Consensus 34 F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~ 113 (142)
T 3ewl_A 34 FYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTI 113 (142)
T ss_dssp ECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEE
T ss_pred EECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeE
Confidence 689999999999887777788887775 45777777777655443333210 111 3478899999
Q ss_pred EEeCCCCccccc
Q 005115 76 VFLSPDLKPLMG 87 (714)
Q Consensus 76 vfl~p~g~p~~~ 87 (714)
++++++|+++++
T Consensus 114 ~lid~~G~i~~~ 125 (142)
T 3ewl_A 114 YLLDGRKRVILK 125 (142)
T ss_dssp EEECTTCBEEEC
T ss_pred EEECCCCCEEec
Confidence 999999999874
No 124
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.78 E-value=1.8e-05 Score=79.14 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~---Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..|++||+.|+.|.... .++++.+... ++.++||.++.+++.+.| |..|+|+++|+. +|+++
T Consensus 38 ~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~g~~~ 102 (241)
T 3idv_A 38 EFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSASVLASRF--------DVSGYPTIKILK-KGQAV 102 (241)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSSSEEEEEE-TTEEE
T ss_pred EEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCCHHHHHhc--------CCCcCCEEEEEc-CCCcc
Confidence 36899999999998654 4566666544 999999999999998888 899999999985 67776
No 125
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.76 E-value=2e-05 Score=71.18 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=44.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH--------------HHHHhcCCCCcCceEEe
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT--------------YVQALYGGGGWPLSVFL 78 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~--------------~~q~~~g~~g~P~~vfl 78 (714)
.+++||..|+.|..+. + ++.+.+. ++..|.|+.++.++--+.|.. .+....|..++|+++++
T Consensus 31 f~~~~C~~C~~~~~~l-~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~li 106 (136)
T 1lu4_A 31 FWTPWCPFCNAEAPSL-S--QVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFY 106 (136)
T ss_dssp EECTTCHHHHHHHHHH-H--HHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEE
T ss_pred EECCcChhHHHHHHHH-H--HHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEE
Confidence 5799999999987542 1 3444443 677777777663222111110 01112378999999999
Q ss_pred CCCCccc
Q 005115 79 SPDLKPL 85 (714)
Q Consensus 79 ~p~g~p~ 85 (714)
+++|+.+
T Consensus 107 d~~G~i~ 113 (136)
T 1lu4_A 107 RADGTST 113 (136)
T ss_dssp CTTSCEE
T ss_pred CCCCcEE
Confidence 9999987
No 126
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.75 E-value=1e-05 Score=67.63 Aligned_cols=59 Identities=15% Similarity=0.024 Sum_probs=43.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~e-e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
.+++||++|+.|... +.++++ -.|..++||.+ +.+++.+.| |..+.|+.++ +|+.++.|
T Consensus 7 f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------gv~~vPt~~i---~g~~~~~G 69 (80)
T 2k8s_A 7 FYHAGCPVCVSAEQA------VANAIDPSKYTVEIVHLGTDKARIAEAEKA--------GVKSVPALVI---DGAAFHIN 69 (80)
T ss_dssp EEECSCHHHHHHHHH------HHHHSCTTTEEEEEEETTTCSSTHHHHHHH--------TCCEEEEEEE---TTEEEEEE
T ss_pred EeCCCCCchHHHHHH------HHHHHHhcCCeEEEEEecCChhhHHHHHHc--------CCCcCCEEEE---CCEEEEec
Confidence 578999999999854 334444 35777788876 566666666 8899999877 88876544
No 127
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=97.72 E-value=3.6e-05 Score=69.18 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=42.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-----------------------ccHHHHHHHHHHHhcCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-----------------------PDVDKVYMTYVQALYGG 69 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-----------------------p~i~~~y~~~~q~~~g~ 69 (714)
.+++||..|+.|.... .++.+.+. ++..|.|+.++. .++.+.| |.
T Consensus 32 f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~i 99 (136)
T 1zzo_A 32 FWAPWCPTCQGEAPVV---GQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANF--------GV 99 (136)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHT--------TC
T ss_pred EEcCCChhHHHHHHHH---HHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHc--------CC
Confidence 5799999999987542 23444443 666677776543 2333333 78
Q ss_pred CCcCceEEeCCCCccc
Q 005115 70 GGWPLSVFLSPDLKPL 85 (714)
Q Consensus 70 ~g~P~~vfl~p~g~p~ 85 (714)
.|+|++++++++|+++
T Consensus 100 ~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 100 TQQPAYAFVDPHGNVD 115 (136)
T ss_dssp CSSSEEEEECTTCCEE
T ss_pred CCCceEEEECCCCCEE
Confidence 8999999999999987
No 128
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=97.70 E-value=5.7e-05 Score=70.72 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH--------------HHHHhc-----CCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------YVQALY-----GGGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~--------------~~q~~~-----g~~g~ 72 (714)
.+++||+.|+.|..+. .++.+.+. +++..|.|+.++.++.-+.|.. ..+.+. |..++
T Consensus 41 f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (165)
T 3or5_A 41 FFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGI 117 (165)
T ss_dssp EECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTCSCSS
T ss_pred EEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhccCCCCC
Confidence 5799999999988653 23444444 3478888888776665555532 112222 67899
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+.+..
T Consensus 118 P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 118 PTSFVIDASGNVSGV 132 (165)
T ss_dssp SEEEEECTTSBEEEE
T ss_pred CeEEEECCCCcEEEE
Confidence 999999999998854
No 129
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=97.68 E-value=7.6e-05 Score=68.94 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH--------------HHHHhcCCCCcCceEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALYGGGGWPLSVF 77 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~--------------~~q~~~g~~g~P~~vf 77 (714)
.+++||.+|+.|.... .++.+.+.+ ++..|.|+.+..++..+.|.. .+....|..++|++++
T Consensus 35 f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l 111 (152)
T 3gl3_A 35 FWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFL 111 (152)
T ss_dssp EECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEE
T ss_pred EECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEE
Confidence 5799999999988652 234444443 366666666654432222210 1112237889999999
Q ss_pred eCCCCcccccc-cccC
Q 005115 78 LSPDLKPLMGG-TYFP 92 (714)
Q Consensus 78 l~p~g~p~~~~-ty~p 92 (714)
++++|+.++.. ++.+
T Consensus 112 id~~G~i~~~~~g~~~ 127 (152)
T 3gl3_A 112 IDRNGKVLLQHVGFRP 127 (152)
T ss_dssp ECTTSBEEEEEESCCT
T ss_pred ECCCCCEEEEEccCCC
Confidence 99999998653 4444
No 130
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=97.66 E-value=2.3e-05 Score=71.41 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=42.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCC-------------------------CccHHHHHHHHHHHh
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------------RPDVDKVYMTYVQAL 66 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee-------------------------~p~i~~~y~~~~q~~ 66 (714)
.+++||++|+.|.... .++.+.+. +++..|.|+.+. ...+.+.|
T Consensus 41 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------- 110 (145)
T 3erw_A 41 FWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEY------- 110 (145)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHT-------
T ss_pred EECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhc-------
Confidence 6799999999987543 22333332 344444444432 22333334
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
|..++|++++++++|+.+..
T Consensus 111 -~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 111 -HIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp -TCCEESEEEEECTTCCEEEE
T ss_pred -CcCccCeEEEEcCCCcEEEE
Confidence 78899999999999998754
No 131
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=97.66 E-value=4.5e-05 Score=70.66 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=44.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH--------------HHHHhcCCCCcCceEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALYGGGGWPLSVF 77 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~--------------~~q~~~g~~g~P~~vf 77 (714)
.+++||.+|+.|....- ++.+.+.+ ++..|.|+.++.++.-+.|.. .+....|..|+|+++|
T Consensus 33 F~~~~C~~C~~~~~~l~---~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l 109 (151)
T 2f9s_A 33 FWGTWCEPCKKEFPYMA---NQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFL 109 (151)
T ss_dssp EECTTCHHHHHHHHHHH---HHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEE
T ss_pred EECCCCHHHHHHHHHHH---HHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEE
Confidence 57999999999886532 24444432 466666666554322222211 1111237889999999
Q ss_pred eCCCCccccc
Q 005115 78 LSPDLKPLMG 87 (714)
Q Consensus 78 l~p~g~p~~~ 87 (714)
++++|+.+..
T Consensus 110 id~~G~i~~~ 119 (151)
T 2f9s_A 110 INPEGKVVKV 119 (151)
T ss_dssp ECTTSEEEEE
T ss_pred ECCCCcEEEE
Confidence 9999999864
No 132
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=97.65 E-value=1.3e-05 Score=75.36 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCCCC--ChhhHhhhhhhCCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccccc-
Q 005115 13 RRTHF--LIKCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG- 88 (714)
Q Consensus 13 ~~t~w--C~wC~~M~~e~f~~~~va~~ln~~-Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~~- 88 (714)
.+++| |+.|+.|.--. +++++.+... +..+|||.|+.|++...| |+.|+||.+|+. ||+++...
T Consensus 41 F~a~~crCgpCk~iaPvl---eela~e~~g~~v~~~KVdvDe~~~lA~~y--------gV~sIPTlilFk-~G~~v~~~~ 108 (140)
T 2qgv_A 41 LSSDPKRTPEVSDNPVMI---GELLHEFPDYTWQVAIADLEQSEAIGDRF--------GAFRFPATLVFT-GGNYRGVLN 108 (140)
T ss_dssp ECCCTTTCTTTTHHHHHH---HHHHTTCTTSCCEEEECCHHHHHHHHHHH--------TCCSSSEEEEEE-TTEEEEEEE
T ss_pred EeCCcccCCcHHHHHhHH---HHHHHHcCCCeEEEEEEECCCCHHHHHHc--------CCccCCEEEEEE-CCEEEEEEe
Confidence 46888 99999998532 4455555445 889999999999999999 999999998885 99998552
Q ss_pred cccC
Q 005115 89 TYFP 92 (714)
Q Consensus 89 ty~p 92 (714)
+..|
T Consensus 109 G~~~ 112 (140)
T 2qgv_A 109 GIHP 112 (140)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 3444
No 133
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=97.64 E-value=5.4e-05 Score=76.72 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=49.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcC--CCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~--ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
..||+||+.|+.|.... .++++.+.. .+..++||. ++.+++.+.| |+.|+|+.+|+.+.++
T Consensus 36 ~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~--------~v~~~Pt~~~~~~g~~ 101 (244)
T 3q6o_A 36 EFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDF--------NIPGFPTVRFFXAFTX 101 (244)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHT--------TCCSSSEEEEECTTCC
T ss_pred EEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHc--------CCCccCEEEEEeCCCc
Confidence 36899999999998653 556666765 788888887 7788888888 8999999999997433
No 134
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=97.62 E-value=5.4e-05 Score=70.32 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=45.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hcccEEEEEcCCCCccHHHHHH-----------------HHHHHhcC--CCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM-----------------TYVQALYG--GGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~~Fv~vkvD~ee~p~i~~~y~-----------------~~~q~~~g--~~g~ 72 (714)
.+++||..|+.|..+. .++.+.+ ++++..|.|+.++.+++.+... ...+ ..| ..++
T Consensus 31 F~a~wC~~C~~~~~~l---~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 106 (151)
T 3raz_A 31 LWATWCGPCRKEMPAM---SKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMK-TYGNTVGVL 106 (151)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHH-TTTCCSCCS
T ss_pred EEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHH-HhCCccCCC
Confidence 6899999999987542 1222223 3467777777765444332211 1112 225 7899
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+++..
T Consensus 107 P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 107 PFTVVEAPKCGYRQT 121 (151)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEECCCCcEEEE
Confidence 999999999998754
No 135
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=97.61 E-value=7.4e-05 Score=69.20 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=51.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCC-ccHHHHHHHH--------------HHHhcCCCCcCceE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTY--------------VQALYGGGGWPLSV 76 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~-p~i~~~y~~~--------------~q~~~g~~g~P~~v 76 (714)
.+++||.+|+.|.... .++.+.+.+ ++..|.|+.+.. ++.-+.|... +....|..++|+++
T Consensus 35 f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 111 (154)
T 3kcm_A 35 FWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETF 111 (154)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEE
Confidence 5799999999987653 334444443 455555555443 2211111100 11123789999999
Q ss_pred EeCCCCcccccc-cccCCCCCCCCccHHHHHHHH
Q 005115 77 FLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 77 fl~p~g~p~~~~-ty~p~~~~~~~~~f~~~L~~i 109 (714)
+++++|+.+... ++.+. ..+.+.+.|+++
T Consensus 112 lid~~G~i~~~~~g~~~~----~~~~l~~~l~~l 141 (154)
T 3kcm_A 112 VIDRHGVILKKVVGAMEW----DHPEVIAFLNNE 141 (154)
T ss_dssp EECTTSBEEEEEESCCCT----TSHHHHHHHHTC
T ss_pred EECCCCcEEEEEcCCCcc----ccHHHHHHHHHH
Confidence 999999998642 33322 234566655544
No 136
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=97.61 E-value=7e-05 Score=69.63 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=45.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHH-----------------HHHHHhcCCCCcCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM-----------------TYVQALYGGGGWPL 74 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~-----------------~~~q~~~g~~g~P~ 74 (714)
.+++||..|+.+..+. .++.+.+.+ ++..|.|+.++.++--+.|. ..+....|..++|+
T Consensus 36 F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~ 112 (152)
T 2lrn_A 36 FWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPH 112 (152)
T ss_dssp EECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCE
T ss_pred EECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCe
Confidence 5899999999987553 234444443 46666777665332211111 11112247889999
Q ss_pred eEEeCCCCccccc
Q 005115 75 SVFLSPDLKPLMG 87 (714)
Q Consensus 75 ~vfl~p~g~p~~~ 87 (714)
+++++++|+.+..
T Consensus 113 ~~lid~~G~i~~~ 125 (152)
T 2lrn_A 113 IILVDPEGKIVAK 125 (152)
T ss_dssp EEEECTTSEEEEE
T ss_pred EEEECCCCeEEEe
Confidence 9999999999865
No 137
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=97.61 E-value=7.2e-05 Score=70.11 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCC-------------------CccHHHHHHHHHHHhcCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------RPDVDKVYMTYVQALYGGGGW 72 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee-------------------~p~i~~~y~~~~q~~~g~~g~ 72 (714)
.+++||..|+.|.... .++.+.+. ++++.|.|+.++ ..++.+.| |..++
T Consensus 48 F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~v~~~ 116 (158)
T 3hdc_A 48 FWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY--------GANRL 116 (158)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHT--------TCCSS
T ss_pred EECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHh--------CCCCc
Confidence 5799999999887553 23444443 467777777765 45566666 88999
Q ss_pred CceEEeCCCCccccc-ccccCCC
Q 005115 73 PLSVFLSPDLKPLMG-GTYFPPE 94 (714)
Q Consensus 73 P~~vfl~p~g~p~~~-~ty~p~~ 94 (714)
|++++++++|+++.. .++.+.+
T Consensus 117 P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 117 PDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp SEEEEECTTSBEEEEEESCCCTT
T ss_pred ceEEEEcCCCCEEEEEeCCCccc
Confidence 999999999998865 2445543
No 138
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=97.60 E-value=1.7e-05 Score=74.42 Aligned_cols=67 Identities=9% Similarity=0.008 Sum_probs=41.5
Q ss_pred CCCCCChhhHhhhhhh------C-------------------CCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHh
Q 005115 13 RRTHFLIKCHVMEVES------F-------------------EDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQAL 66 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~------f-------------------~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~ 66 (714)
.+++||++|+.|...- | ...++.+++++ ++-.+.++.++..++.+.|
T Consensus 45 F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------- 117 (164)
T 2h30_A 45 FWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNL------- 117 (164)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHT-------
T ss_pred EECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHHc-------
Confidence 5899999999986431 1 11223333333 2211223334444555555
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
|..++|+++|++++|+.+..
T Consensus 118 -~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 118 -NISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp -TCCSSSEEEEECTTSCEEEE
T ss_pred -CCCccceEEEECCCCcEEEE
Confidence 78899999999999998854
No 139
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.60 E-value=5.2e-05 Score=75.85 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=50.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~---Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||++|+.|.... .++++.+... +..++||.++.+++.+.| |..|+|+.+|+. +|+++.
T Consensus 154 f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~g~~~~ 218 (241)
T 3idv_A 154 FYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAETDLAKRF--------DVSGYPTLKIFR-KGRPYD 218 (241)
T ss_dssp EECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSSSEEEEEE-TTEEEE
T ss_pred EECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCHHHHHHc--------CCcccCEEEEEE-CCeEEE
Confidence 5899999999998643 3466666443 899999999999999888 889999998886 577763
No 140
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.58 E-value=4.2e-05 Score=70.32 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=54.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHH----------------HHHHhcCCCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT----------------YVQALYGGGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~~Fv~vkvD~ee~p~i~~~y~~----------------~~q~~~g~~g~P~~ 75 (714)
.+++||+.|+.|....-++|.+.+.+ ++++..|.|+.++.++.-+.|.. .+....+..++|++
T Consensus 38 F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~ 117 (142)
T 3eur_A 38 INNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTL 117 (142)
T ss_dssp ECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEE
T ss_pred EECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeE
Confidence 68999999999988877777777776 45677777877765443222110 01223467899999
Q ss_pred EEeCCCCcccccc
Q 005115 76 VFLSPDLKPLMGG 88 (714)
Q Consensus 76 vfl~p~g~p~~~~ 88 (714)
++++++|+.++..
T Consensus 118 ~lid~~G~i~~~~ 130 (142)
T 3eur_A 118 YLLDKNKTVLLKD 130 (142)
T ss_dssp EEECTTCBEEEEE
T ss_pred EEECCCCcEEecC
Confidence 9999999999764
No 141
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=97.58 E-value=3.9e-05 Score=68.15 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-----ccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-----PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-----p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.|.. +.+.++..|..|.||.++. +++.+.| |..++|++ |+ +|+.+.+
T Consensus 25 f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~--------~v~~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 25 FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWT--------GRGTVPNV-FI--GGKQIGG 86 (116)
T ss_dssp EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHH--------SCCSSCEE-EE--TTEEEEC
T ss_pred EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHh--------CCCCcCEE-EE--CCEEECC
Confidence 68999999999875 2345677888888888764 3344444 88999998 55 6887744
No 142
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=97.58 E-value=3.6e-05 Score=68.48 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=39.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC----CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE----ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e----e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..||+||++|+.|... |+. +.+.|-.|.+|.+ +.+++.+.| |+.|+|+.+| +|+++.
T Consensus 18 ~F~A~WC~~C~~~~p~-~~~------~a~~~~~v~~~~~~~~~~~~~l~~~~--------~V~~~PT~~i---~G~~~~ 78 (106)
T 3kp8_A 18 MYGAYWCPHCQDQKEL-FGA------AFDQVPYVECSPNGPGTPQAQECTEA--------GITSYPTWII---NGRTYT 78 (106)
T ss_dssp EEECTTCHHHHHHHHH-HGG------GGGGSCEEESCTTCTTSCCCHHHHHT--------TCCSSSEEEE---TTEEEE
T ss_pred EEECCCCHHHHHHHHH-HHH------HHHhCCEEEEecccccchhHHHHHHc--------CCeEeCEEEE---CCEEec
Confidence 4799999999999743 321 2233334444433 678888888 8999999777 888643
No 143
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=97.56 E-value=5e-05 Score=68.67 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=45.0
Q ss_pred CChhhHhhhhhhCCCHHHHHHHhcccEEEEEcC-------CCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 17 FLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDR-------EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 17 wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~-------ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
||+.|+.|.... .++++.+.+++..++||. ++.+++.+.| +..|+|+.+|+.+ +..+.+
T Consensus 42 wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~--------~i~~~Pt~~~~~~-~~~~~g 107 (123)
T 1wou_A 42 WCPDCVQAEPVV---REGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL--------KVTAVPTLLKYGT-PQKLVE 107 (123)
T ss_dssp SCHHHHHHHHHH---HHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH--------CCCSSSEEEETTS-SCEEEG
T ss_pred cCHHHHHhhHHH---HHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHC--------CCCeeCEEEEEcC-CceEec
Confidence 999999998553 334444445789999999 6778887777 8999999999987 555543
No 144
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.55 E-value=6.3e-05 Score=69.70 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHH----------------HHHHHhcCCCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM----------------TYVQALYGGGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~----------------~~~q~~~g~~g~P~~ 75 (714)
.+++||++|+.|... +.++.++ ++..|.|+.++.++.-+.|. ...+ ..|..++|++
T Consensus 49 f~~~~C~~C~~~~~~------l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~v~~~P~~ 121 (156)
T 1kng_A 49 VWASWCVPCHDEAPL------LTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASI-EWGVYGVPET 121 (156)
T ss_dssp EECTTCHHHHHHHHH------HHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHH-HTTCCSSCEE
T ss_pred EEcccCHhHHHHHHH------HHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHH-hcCcCccCeE
Confidence 589999999998743 4444443 36666666544332222221 1111 2378899999
Q ss_pred EEeCCCCccccc
Q 005115 76 VFLSPDLKPLMG 87 (714)
Q Consensus 76 vfl~p~g~p~~~ 87 (714)
++++++|+++..
T Consensus 122 ~~id~~G~i~~~ 133 (156)
T 1kng_A 122 FVVGREGTIVYK 133 (156)
T ss_dssp EEECTTSBEEEE
T ss_pred EEEcCCCCEEEE
Confidence 999999998854
No 145
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=97.54 E-value=7.3e-05 Score=71.94 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHhcCCCCcCceEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYGGGGWPLSVF 77 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~---------------~q~~~g~~g~P~~vf 77 (714)
.+++||..|+.+. |.+.++.++++..|.|+.++.++.-+.|... +....|..++|++++
T Consensus 65 F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l 138 (176)
T 3kh7_A 65 VWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYL 138 (176)
T ss_dssp EECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEE
T ss_pred EECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEE
Confidence 5799999999986 4577777777777777754433322222110 011127889999999
Q ss_pred eCCCCccccc
Q 005115 78 LSPDLKPLMG 87 (714)
Q Consensus 78 l~p~g~p~~~ 87 (714)
++++|+.++.
T Consensus 139 id~~G~i~~~ 148 (176)
T 3kh7_A 139 IDKQGIIRHK 148 (176)
T ss_dssp ECTTCBEEEE
T ss_pred ECCCCeEEEE
Confidence 9999999865
No 146
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=97.53 E-value=6.4e-05 Score=68.78 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=45.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hc-ccEEEEEcCCCCccHHHHHH-----------------HHHHHhcCCCCcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYM-----------------TYVQALYGGGGWP 73 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~-~Fv~vkvD~ee~p~i~~~y~-----------------~~~q~~~g~~g~P 73 (714)
.+++||.+|+.|.... .++.+.+ .+ ++..|.|+.+..++--+.|. ..+....|..++|
T Consensus 40 F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P 116 (148)
T 3fkf_A 40 FWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLP 116 (148)
T ss_dssp EECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSS
T ss_pred EECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcC
Confidence 5799999999988653 2344444 32 36666666655432111111 0111223788999
Q ss_pred ceEEeCCCCcccccc
Q 005115 74 LSVFLSPDLKPLMGG 88 (714)
Q Consensus 74 ~~vfl~p~g~p~~~~ 88 (714)
++++++++|+.+...
T Consensus 117 ~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 117 TNILLSPTGKILARD 131 (148)
T ss_dssp EEEEECTTSBEEEES
T ss_pred EEEEECCCCeEEEec
Confidence 999999999998654
No 147
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.51 E-value=5.8e-05 Score=75.36 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=46.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||++|+.|...- .++++.. .++..++||.++.+++.+.| |..|+|+++| +|++
T Consensus 142 ~F~a~wC~~C~~~~~~~---~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 142 VFVTTSCGYCPSAAVMA---WDFALAN-DYITSKVIDASENQDLAEQF--------QVVGVPKIVI---NKGV 199 (229)
T ss_dssp EEECTTCTTHHHHHHHH---HHHHHHC-TTEEEEEEEGGGCHHHHHHT--------TCCSSSEEEE---GGGT
T ss_pred EEECCCCcchHHHHHHH---HHHHHHC-CCeEEEEEECCCCHHHHHHc--------CCcccCEEEE---CCEE
Confidence 37999999999998432 2344333 47888999999999998888 8999999988 7884
No 148
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=97.51 E-value=2.3e-05 Score=73.53 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=40.8
Q ss_pred CCCC--ChhhHhhhhhhCCCHHHHHHHhcccE--EEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 14 RTHF--LIKCHVMEVESFEDEGVAKLLNDWFV--SIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 14 ~t~w--C~wC~~M~~e~f~~~~va~~ln~~Fv--~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
+++| |..|+.|... | +++++.+ .++. .++||.++.|++.+.| |+.|+|+++|+ .+|+++..
T Consensus 42 ~~~~~~C~~C~~l~P~-l--~~la~~~-~~v~~~~~~Vd~d~~~~la~~~--------~V~~iPT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 42 SSDPRRTPEVSDNPVM-I--AELLREF-PQFDWQVAVADLEQSEAIGDRF--------NVRRFPATLVF-TDGKLRGA 106 (142)
T ss_dssp CCCSCC----CCHHHH-H--HHHHHTC-TTSCCEEEEECHHHHHHHHHTT--------TCCSSSEEEEE-SCC----C
T ss_pred ECCCCCCccHHHHHHH-H--HHHHHHh-cccceeEEEEECCCCHHHHHhc--------CCCcCCeEEEE-eCCEEEEE
Confidence 4555 9999999854 2 2344444 4677 8999999999988888 89999999999 89998743
No 149
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=97.46 E-value=0.0011 Score=76.81 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=60.2
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC--CCCCCc
Q 005115 411 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS--KAPGFL 487 (714)
Q Consensus 411 t~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~--~~~~~l 487 (714)
|+-.+-++.|||.|++++++. ...|. .++|+.|+++++|..++-- ..+... ..+.. ...++.
T Consensus 286 s~~a~e~AAAlAaAS~vfk~~--D~~yA--------~~~L~~Ak~l~~fA~~~~~-----~~y~~~~~~~~g~Y~ss~~~ 350 (639)
T 1clc_A 286 SAATADFVAMTAMAARIFRPY--DPQYA--------EKCINAAKVSYEFLKNNPA-----NVFANQSGFSTGEYATVSDA 350 (639)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHHHHHHCCS-----CCCCCCTTCCSCCCCCSCSH
T ss_pred cHHHHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHHcCC-----CccCCCccccccccCCCCcc
Confidence 344577899999999999751 11111 6789999999999987631 111100 00000 113344
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNT 519 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~~ 519 (714)
|+ +++|.++||.+|||+.||+.|++....
T Consensus 351 DE---l~WAAawLy~ATgd~~Yl~~a~~~~~~ 379 (639)
T 1clc_A 351 DD---RLWAAAEMWETLGDEEYLRDFENRAAQ 379 (639)
T ss_dssp HH---HHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred hH---HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44 478899999999999999999987643
No 150
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=97.46 E-value=0.00015 Score=73.90 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=47.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHH---h-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLL---N-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~l---n-~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||++|+.|...- .+++... + .++..++||.++.|++.+.| |+.|+|+++| +|+.++.
T Consensus 144 ~F~a~wC~~C~~~~p~l---~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~V~~vPt~~i---~G~~~~~ 209 (243)
T 2hls_A 144 TIITPSCPYCPYAVLLA---HMFAYEAWKQGNPVILSEAVEAYENPDIADKY--------GVMSVPSIAI---NGYLVFV 209 (243)
T ss_dssp EEECSSCSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEEETTTCHHHHHHT--------TCCSSSEEEE---TTEEEEE
T ss_pred EEECCCCCCcHHHHHHH---HHHHHHcccccCCcEEEEEEECccCHHHHHHc--------CCeeeCeEEE---CCEEEEe
Confidence 47899999999987542 2344433 1 57888899999999988888 8899999988 8887643
No 151
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=97.45 E-value=8.3e-05 Score=80.73 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH------hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL------NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l------n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||+||+.|+.|..+- .++++.+ +.+++.++||.++.+++.+.| |+.|+|+.+|+ .+|+++
T Consensus 29 F~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~~Pt~~~f-~~G~~~ 95 (382)
T 2r2j_A 29 FYADWCRFSQMLHPIF---EEASDVIKEEFPNENQVVFARVDCDQHSDIAQRY--------RISKYPTLKLF-RNGMMM 95 (382)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTCC---CCEEEEEEETTTCHHHHHHT--------TCCEESEEEEE-ETTEEE
T ss_pred EECCCCHHHHHHHHHH---HHHHHHHHhhcCCCCceEEEEEECCccHHHHHhc--------CCCcCCEEEEE-eCCcEe
Confidence 6999999999999763 4677777 345899999999999998888 89999999887 478765
No 152
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=97.40 E-value=0.0001 Score=69.38 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCC------------------CCccHHHHHHH-----------
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDRE------------------ERPDVDKVYMT----------- 61 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~e------------------e~p~i~~~y~~----------- 61 (714)
.+++||+.|+.|... +.++..+ ++..|.|+.+ +.++.-+.|..
T Consensus 44 F~~~~C~~C~~~~~~------l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
T 3ha9_A 44 FMAAWCPSCVYMADL------LDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVM 117 (165)
T ss_dssp EECTTCTTHHHHHHH------HHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEE
T ss_pred EECCCCcchhhhHHH------HHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEe
Confidence 579999999998743 5544443 4455555544 33322222211
Q ss_pred ---HHHHhcCCCCcCceEEeCCCCccccccccc
Q 005115 62 ---YVQALYGGGGWPLSVFLSPDLKPLMGGTYF 91 (714)
Q Consensus 62 ---~~q~~~g~~g~P~~vfl~p~g~p~~~~ty~ 91 (714)
.+....|..++|++++++++|+.++ .++.
T Consensus 118 d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~ 149 (165)
T 3ha9_A 118 DDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTT 149 (165)
T ss_dssp CCSHHHHHTTCCSSSEEEEEETTCCEEE-EEES
T ss_pred ChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCC
Confidence 1112237889999999999999998 5555
No 153
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.38 E-value=0.00013 Score=66.94 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=45.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHHH-----------------HHHHHHhcCCCCcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQALYGGGGWP 73 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~y-----------------~~~~q~~~g~~g~P 73 (714)
.+++||..|+.|.... .++.+.+. +++..|.|+.++.++--+.| ....+. .|..++|
T Consensus 35 F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~v~~~P 110 (144)
T 1i5g_A 35 FSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTG-FDVKSIP 110 (144)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH-TTCCSSS
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHH-cCCCCCC
Confidence 5889999999987553 34555555 46666666655432111111 122222 3788999
Q ss_pred ceEEeC-CCCccccc
Q 005115 74 LSVFLS-PDLKPLMG 87 (714)
Q Consensus 74 ~~vfl~-p~g~p~~~ 87 (714)
+++|++ ++|+.+..
T Consensus 111 ~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 111 TLVGVEADSGNIITT 125 (144)
T ss_dssp EEEEEETTTCCEEES
T ss_pred EEEEEECCCCcEEec
Confidence 999999 89999865
No 154
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=97.38 E-value=7.3e-05 Score=69.36 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHH-----------------HHHHHhcCCCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-----------------TYVQALYGGGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~-----------------~~~q~~~g~~g~P~~ 75 (714)
.+++||.+|+.|.... .++.+.++=.||.|-+|.++.++.-+.|. ..+....|..++|++
T Consensus 37 f~~~~C~~C~~~~~~l---~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~ 113 (154)
T 3ia1_A 37 FWASWCTVCKAEFPGL---HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWT 113 (154)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEE
T ss_pred EEcccChhHHHHHHHH---HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEE
Confidence 5789999999987553 23333334455555554233332222221 111122377899999
Q ss_pred EEeCCCCccccc
Q 005115 76 VFLSPDLKPLMG 87 (714)
Q Consensus 76 vfl~p~g~p~~~ 87 (714)
++++++|+.+..
T Consensus 114 ~lid~~G~i~~~ 125 (154)
T 3ia1_A 114 FVVDREGKVVAL 125 (154)
T ss_dssp EEECTTSEEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999998854
No 155
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.36 E-value=0.00018 Score=68.51 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=44.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHH----------------HHHHHhcCCCCcCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYM----------------TYVQALYGGGGWPL 74 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~----------------~~~q~~~g~~g~P~ 74 (714)
.+++||..|+.|.... .++.+.+.+ ++..|.|+.++.++--+.|. ..+....|..++|+
T Consensus 55 F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 131 (165)
T 3s9f_A 55 FSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPT 131 (165)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSE
T ss_pred EECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCE
Confidence 6899999999988553 335555543 44444444444322111110 11222337889999
Q ss_pred eEEeCCC-Cccccc
Q 005115 75 SVFLSPD-LKPLMG 87 (714)
Q Consensus 75 ~vfl~p~-g~p~~~ 87 (714)
++|++++ |+++..
T Consensus 132 ~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 132 LIGLNADTGDTVTT 145 (165)
T ss_dssp EEEEETTTCCEEES
T ss_pred EEEEeCCCCEEEec
Confidence 9999998 999865
No 156
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.00016 Score=66.90 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEc--CC---------------------CCccHHHHHHHHHHHhcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVD--RE---------------------ERPDVDKVYMTYVQALYG 68 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD--~e---------------------e~p~i~~~y~~~~q~~~g 68 (714)
.+++||+.|+.|.... .++.+.+.+ ++..|-|+ .+ +...+.+.| |
T Consensus 35 f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~ 103 (153)
T 2l5o_A 35 FWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF--------G 103 (153)
T ss_dssp EECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH--------T
T ss_pred EECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc--------C
Confidence 4789999999987552 234444433 34444333 22 233444444 7
Q ss_pred CCCcCceEEeCCCCccccc
Q 005115 69 GGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 69 ~~g~P~~vfl~p~g~p~~~ 87 (714)
..++|++++++++|+.+..
T Consensus 104 i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 104 TQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp CCSSSEEEEECSSSCCCEE
T ss_pred CCccCeEEEECCCCcEEEE
Confidence 8899999999999998743
No 157
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.34 E-value=0.00013 Score=67.18 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=44.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||..|+.|... | .++++.. .++..++||.++.+ +.| ++.++|+.+|+. +|+.+..
T Consensus 37 f~a~wC~~C~~~~p~-l--~~la~~~-~~v~~~~vd~~~~~---~~~--------~i~~~Pt~~~~~-~G~~v~~ 95 (135)
T 2dbc_A 37 LYRSSVPMCLVVNQH-L--SVLARKF-PETKFVKAIVNSCI---EHY--------HDNCLPTIFVYK-NGQIEGK 95 (135)
T ss_dssp ECCTTCHHHHHHHHH-H--HHHHHHC-SSEEEEEECCSSSC---SSC--------CSSCCSEEEEES-SSSCSEE
T ss_pred EECCCChHHHHHHHH-H--HHHHHHC-CCcEEEEEEhhcCc---ccC--------CCCCCCEEEEEE-CCEEEEE
Confidence 799999999999854 2 2244332 35778889998876 234 788999999997 9998744
No 158
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=97.33 E-value=0.0024 Score=73.57 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---CCCCcch
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---APGFLDD 489 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~---~~~~l~D 489 (714)
-.+.++.|||.|++++.+. ...|. .++|+.|+++.+|..++- |. |.++... .......
T Consensus 152 ~a~~~AAAlAaAS~vfk~~--D~~yA--------~~~L~~Ak~~~~fA~~~~-----g~----y~~~~~~~~~Y~s~s~~ 212 (605)
T 1tf4_A 152 VAAETAAAMAASSIVFADD--DPAYA--------ATLVQHAKQLYTFADTYR-----GV----YSDCVPAGAFYNSWSGY 212 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHHHHHHSC-----CC----GGGTSTTHHHHCCSSCS
T ss_pred HHHHHHHHHHHHHhhcccc--CHHHH--------HHHHHHHHHHHHHHHHcC-----CC----cCCCCCccccccCCCCC
Confidence 3488999999999999851 01111 578999999999998752 11 1111110 0000122
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005115 490 YAFLISGLLDLYEFGSGTKWLVWAIELQ 517 (714)
Q Consensus 490 yA~li~all~LyeaTgd~~~L~~A~~L~ 517 (714)
.-.+++|.++||.+|||..||+.|++..
T Consensus 213 ~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 240 (605)
T 1tf4_A 213 QDELVWGAYWLYKATGDDSYLAKAEYEY 240 (605)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2356789999999999999999998743
No 159
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=97.33 E-value=7.7e-05 Score=79.86 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCCCChhhHhhhhh------hCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVE------SFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e------~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||+||+ |+.|..+ .|+ ++++.+.. ++..++||.++.+++.+.| |+.|+|+++|+ .+|++.
T Consensus 35 F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 35 YHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKEAKLAKKL--------GFDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp EECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTTHHHHHHH--------TCCSTTEEEEE-ETTEEE
T ss_pred EECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCCHHHHHhc--------CCCccceEEEE-ECCcEE
Confidence 6999999 9776544 244 68888876 5999999999999999888 89999999999 678854
No 160
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.33 E-value=0.00012 Score=81.54 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=49.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
.||+||+.|+.|.... .++++.+.. +++.++||.++. ++.+.| ++.|+|+++|+.+.++
T Consensus 377 f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~-~~~~~~--------~v~~~Pt~~~~~~~~~ 437 (481)
T 3f8u_A 377 FYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN-DVPSPY--------EVRGFPTIYFSPANKK 437 (481)
T ss_dssp EECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS-CCCTTC--------CCCSSSEEEEECTTCT
T ss_pred EecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch-hhHhhC--------CCcccCEEEEEeCCCe
Confidence 6899999999999764 567777765 699999999987 776666 8899999999988776
No 161
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=3.2e-05 Score=72.44 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHHHHH--------------HhcC--CCCcCce
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQ--------------ALYG--GGGWPLS 75 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~~Fv~vkvD~ee~p~i~~~y~~~~q--------------~~~g--~~g~P~~ 75 (714)
.+++||.+|+.|... ++..-..++- ++++..|.|+.++.++..+.|.+... ...| ..|+|++
T Consensus 40 f~a~~C~~C~~~~~~-l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~P~~ 118 (159)
T 2ls5_A 40 FTASWCGVCRKEMPF-IEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRN 118 (159)
Confidence 579999999987654 4331111122 46777777877766554444431100 0112 4679999
Q ss_pred EEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 76 VFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 76 vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
+|++++|+.++...-+.+ ..+.++|+++.+
T Consensus 119 ~lid~~G~i~~~~~g~~~------~~l~~~l~~l~~ 148 (159)
T 2ls5_A 119 VLIDREGKIVKLTRLYNE------EEFASLVQQINE 148 (159)
Confidence 999999999865321121 246666665543
No 162
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=96.43 E-value=3.2e-05 Score=70.64 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=43.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHH---hcccEEEEEcCCCCccHHHHHH------------------HHHHHhcCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYM------------------TYVQALYGGG 70 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~l---n~~Fv~vkvD~ee~p~i~~~y~------------------~~~q~~~g~~ 70 (714)
..+++||+.|+.|.... .++.+.+ ++++..|.|+.++.++--+.|+ ..++ ..|..
T Consensus 32 ~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 107 (143)
T 2lus_A 32 YFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTA-KYGIT 107 (143)
Confidence 36899999999887542 2233334 2345555555544332111111 1111 12678
Q ss_pred CcCceEEeCCCCccccccc
Q 005115 71 GWPLSVFLSPDLKPLMGGT 89 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~t 89 (714)
++|++++++++|+++...+
T Consensus 108 ~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 108 GIPALVIVKKDGTLISMNG 126 (143)
Confidence 9999999999999987643
No 163
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.31 E-value=0.00019 Score=80.66 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=52.0
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
..|++||+.|+.|..+- .++++.++. ++..++||.++.+++.+.| |+.|+|+.+|+. +|+.
T Consensus 37 ~F~a~wC~~C~~~~p~~---~~~a~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~-~g~~ 98 (504)
T 2b5e_A 37 EFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTENQDLCMEH--------NIPGFPSLKIFK-NSDV 98 (504)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEEE-TTCT
T ss_pred EEECCCCHHHHHhHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEEEe-CCcc
Confidence 36999999999999764 568888877 4999999999999999888 899999999986 4664
No 164
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=97.30 E-value=0.00026 Score=69.14 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCChhhHhhhhhhCCCHHHHHHHh-----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 16 HFLIKCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 16 ~wC~wC~~M~~e~f~~~~va~~ln-----~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||..|+.|..+ | .+||+.+. .+.+-+|||.|+.|++.+.| |+.+.|+.++..+.+.+-
T Consensus 54 ~wCgpCk~l~P~-~--e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~--------~I~siPtl~~F~~g~~~~ 117 (178)
T 3ga4_A 54 MSCQLCHDFEKT-Y--HAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL--------KLQNVPHLVVYPPAESNK 117 (178)
T ss_dssp CBCHHHHHHHHH-H--HHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHT--------TCCSSCEEEEECCCCGGG
T ss_pred CCChhHHHHHHH-H--HHHHHHhhhccCCCCEEEEEEECccCHHHHHHc--------CCCCCCEEEEEcCCCCCC
Confidence 599999999854 2 45666665 56788899999999999999 999999999999887665
No 165
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.29 E-value=0.00024 Score=64.99 Aligned_cols=71 Identities=7% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHH-----------------HHHHHHHhcCCCCcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKV-----------------YMTYVQALYGGGGWP 73 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~-----------------y~~~~q~~~g~~g~P 73 (714)
.+++||+.|+.|.... .++.+.+. +++..|.|+.++.++--+. ....++. .|..++|
T Consensus 35 F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~P 110 (144)
T 1o73_A 35 FSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT-FGVESIP 110 (144)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH-HTCCSSS
T ss_pred EECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHH-cCCCCCC
Confidence 5889999999987552 23444444 4555555555543211111 1112222 2788999
Q ss_pred ceEEeC-CCCccccc
Q 005115 74 LSVFLS-PDLKPLMG 87 (714)
Q Consensus 74 ~~vfl~-p~g~p~~~ 87 (714)
+++|++ ++|+++..
T Consensus 111 t~~lid~~~G~i~~~ 125 (144)
T 1o73_A 111 TLITINADTGAIIGT 125 (144)
T ss_dssp EEEEEETTTCCEEES
T ss_pred EEEEEECCCCeEEec
Confidence 999999 89999865
No 166
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.28 E-value=0.0002 Score=65.99 Aligned_cols=71 Identities=6% Similarity=-0.073 Sum_probs=44.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCCCCccHHHH-----------------HHHHHHHhcCCCCcC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKV-----------------YMTYVQALYGGGGWP 73 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~ee~p~i~~~-----------------y~~~~q~~~g~~g~P 73 (714)
.+++||+.|+.+.... .++.+.+. +++..|.|+.++.++--+. ....++. .|..++|
T Consensus 35 F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~v~~~P 110 (146)
T 1o8x_A 35 FSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH-FNVESIP 110 (146)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH-TTCCSSS
T ss_pred EEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHH-hCCCCCC
Confidence 5889999999987543 34555555 4555555555543211111 1122222 3788999
Q ss_pred ceEEeC-CCCccccc
Q 005115 74 LSVFLS-PDLKPLMG 87 (714)
Q Consensus 74 ~~vfl~-p~g~p~~~ 87 (714)
+++|++ ++|+++..
T Consensus 111 t~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 111 TLIGVDADSGDVVTT 125 (146)
T ss_dssp EEEEEETTTCCEEES
T ss_pred EEEEEECCCCeEEEe
Confidence 999999 89998865
No 167
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=97.28 E-value=0.00026 Score=65.90 Aligned_cols=20 Identities=10% Similarity=-0.100 Sum_probs=18.3
Q ss_pred CCCCcCceEEeCCCCccccc
Q 005115 68 GGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~ 87 (714)
|..|+|+++|++++|++++.
T Consensus 117 ~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 117 RLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp TCCSSSEEEEECTTSBEEEE
T ss_pred ccCccceEEEECCCCcEEEE
Confidence 78999999999999999865
No 168
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.25 E-value=0.0002 Score=64.09 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
-.+++||++|+.|..-. .++++-. .+-..+||.++.|++...| |.. +|+.+|+. +|+++..
T Consensus 34 ~y~~~~C~~C~~a~~~L---~~l~~e~--~i~~~~vDId~d~~l~~~y--------gv~-VP~l~~~~-dG~~v~~ 94 (107)
T 2fgx_A 34 VYGREGCHLCEEMIASL---RVLQKKS--WFELEVINIDGNEHLTRLY--------NDR-VPVLFAVN-EDKELCH 94 (107)
T ss_dssp EEECSSCHHHHHHHHHH---HHHHHHS--CCCCEEEETTTCHHHHHHS--------TTS-CSEEEETT-TTEEEEC
T ss_pred EEeCCCChhHHHHHHHH---HHHHHhc--CCeEEEEECCCCHHHHHHh--------CCC-CceEEEEE-CCEEEEe
Confidence 35788999999988431 1222222 3666688888889888777 665 99987664 7888743
No 169
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=97.22 E-value=0.00042 Score=78.61 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=51.7
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcC--CCCccHHHHHHHHHHHhcCCCCcCceEEeCC---CCc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSVFLSP---DLK 83 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~--ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p---~g~ 83 (714)
..||+||+.|+.|...- .++++.+.. .+..++||. |+.+++.+.| |+.|+|+++|+.+ +|+
T Consensus 36 ~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~--------~V~~~PTl~~f~~g~~~G~ 104 (519)
T 3t58_A 36 EFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREF--------NIAGFPTVRFFQAFTKNGS 104 (519)
T ss_dssp EEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT--------TCCSBSEEEEECTTCCSCC
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHc--------CCcccCEEEEEcCcccCCC
Confidence 37999999999999664 667777776 788888988 4578888888 8999999999998 666
Q ss_pred cc
Q 005115 84 PL 85 (714)
Q Consensus 84 p~ 85 (714)
++
T Consensus 105 ~~ 106 (519)
T 3t58_A 105 GA 106 (519)
T ss_dssp CE
T ss_pred ce
Confidence 44
No 170
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00028 Score=74.28 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHHhcCCCCcCceEEeCCCC
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 82 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e--e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g 82 (714)
..||+||..|+.|..+. .++++.++..+..++||.+ +.+++.+.| |+.|+|+.+|+.+.+
T Consensus 41 ~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~--------~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 41 EFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKY--------DVNGFPTLMVFRPPK 102 (298)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHT--------TCCBSSEEEEEECCC
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhC--------CCCccceEEEEECCc
Confidence 37999999999999754 5678888766666666555 778888877 899999999998643
No 171
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=97.17 E-value=0.00032 Score=65.23 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=18.2
Q ss_pred CCCCcCceEEeCCCCccccc
Q 005115 68 GGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~ 87 (714)
|..|+|++++++++|++++.
T Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 114 QMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp TCCSSSEEEEECTTSEEEEE
T ss_pred CCCCCCEEEEECCCCCEEEE
Confidence 78999999999999998864
No 172
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.17 E-value=0.00021 Score=79.58 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||+.|+.|..+- .++++.++..+..++||.++.+++.+.| |+.|+|+.+|+ .+|+.+
T Consensus 28 F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~-~~g~~~ 88 (481)
T 3f8u_A 28 FFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTANTNTCNKY--------GVSGYPTLKIF-RDGEEA 88 (481)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTTCHHHHHHT--------TCCEESEEEEE-ETTEEE
T ss_pred EECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCCCHHHHHhc--------CCCCCCEEEEE-eCCcee
Confidence 6999999999999764 6788888888888999999999999888 89999988888 577654
No 173
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.16 E-value=0.00047 Score=66.10 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=45.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc-c------EEEEEcCCC-CccHHHHHHHHH---------------HHhc--
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW-F------VSIKVDREE-RPDVDKVYMTYV---------------QALY-- 67 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~-F------v~vkvD~ee-~p~i~~~y~~~~---------------q~~~-- 67 (714)
.+++||+.|+.|..+. .++.+.+.+. + ..|.|+.++ .++.-+.|.... ..+.
T Consensus 66 F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 142 (183)
T 3lwa_A 66 AWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGV 142 (183)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTC
T ss_pred EECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHHhccC
Confidence 6799999999987553 2344444432 5 666666665 455555553211 1111
Q ss_pred CCCCcCceEEeCCCCccccc
Q 005115 68 GGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~ 87 (714)
+..++|++++++++|+++..
T Consensus 143 ~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 143 PASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp CTTCCSEEEEECTTSCEEEE
T ss_pred CCCCCCeEEEECCCCcEEEE
Confidence 35789999999999999854
No 174
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.16 E-value=0.00081 Score=62.76 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=45.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------HHHHhcCCCCcCceE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT---------------YVQALYGGGGWPLSV 76 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~---------------~~q~~~g~~g~P~~v 76 (714)
.+++||..|..+.... .++.+.+. +++..|.|+.++.++.-+.|.. .+....|..++|+++
T Consensus 42 F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~ 118 (152)
T 2lrt_A 42 FTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVF 118 (152)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEE
T ss_pred EEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCceEE
Confidence 5789999999866432 23333343 3477777777665442222210 011223788999999
Q ss_pred EeCCCCccccc
Q 005115 77 FLSPDLKPLMG 87 (714)
Q Consensus 77 fl~p~g~p~~~ 87 (714)
+++++|+++..
T Consensus 119 lid~~G~i~~~ 129 (152)
T 2lrt_A 119 LVNRNNELSAR 129 (152)
T ss_dssp EEETTTEEEEE
T ss_pred EECCCCeEEEe
Confidence 99999999864
No 175
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.13 E-value=0.00057 Score=76.64 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=46.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.||+||+.|+.|.... .++++.+. .+++.++||.++.+.. + | ++.|+|+.+|+ ++|+.
T Consensus 383 F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~--------~v~~~Pt~~~~-~~G~~ 443 (504)
T 2b5e_A 383 YYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTENDVR-G-V--------VIEGYPTIVLY-PGGKK 443 (504)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCCCS-S-C--------CCSSSSEEEEE-CCTTS
T ss_pred EECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccccc-c-C--------CceecCeEEEE-eCCce
Confidence 6999999999998754 35666554 4899999999887644 3 6 78999999999 78875
No 176
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=97.12 E-value=0.11 Score=56.81 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCChHH
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 509 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~-----------------~~~l~DyA~li~all~LyeaTgd~~~ 509 (714)
++.+++++....--.+..+|++++.|.-.+.+|+... ..+.-+-. ....++..|.+++|+.-
T Consensus 316 ~~~l~W~i~gLka~~~yAYd~~~N~~~Pm~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~L 394 (543)
T 2v8i_A 316 QDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQDLSNYTLPRDGYYGKKGTVLKPYKAGNE-FLISYARAYAIDNDPLL 394 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEECCEETTSCBCTTEECSSCBTTBCTTCEECCEECCHH-HHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCCch-hhHHHHHHHHcCCCHHH
Confidence 6899999998888888899998888877788875411 12222333 46899999999999998
Q ss_pred HHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005115 510 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 589 (714)
Q Consensus 510 L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~ 589 (714)
.+.+..++..+.--=++. .......+ +-..++....++.+|+.|++.|++ +.|.+.|+++-.
T Consensus 395 w~~~~~ma~~~~lgdi~~-------~~~~~~~~--------~~~~~~~sp~lL~allEL~~atq~---~~~l~lA~~~g~ 456 (543)
T 2v8i_A 395 WKVARGIANDQGLGDIGT-------APGKEVKV--------NMDTTNSDPYALFALLDLYHASQV---ADYRKLAEKIGD 456 (543)
T ss_dssp HHHHHHHHHHTTCEECTT-------BTTBSCEE--------CTTCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccCC-------CcCccccc--------ccCCCCcCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 888877665442111111 11111111 122345556788899999999996 889999988777
Q ss_pred HHHHH
Q 005115 590 VFETR 594 (714)
Q Consensus 590 ~~~~~ 594 (714)
.+..+
T Consensus 457 nl~~~ 461 (543)
T 2v8i_A 457 NIIKI 461 (543)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 177
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=97.07 E-value=0.015 Score=67.19 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=110.4
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~A---y~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=++-+---|-|-...|+++|.+. |... +-+..++.++-.++||++ |....|.||.-. |.+
T Consensus 48 DlsGGwy----DAGD~~Kf~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~Dyllk-~~~~~~~~y~qVGdg~ 122 (614)
T 1g87_A 48 DLTGGWY----DAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIK-CNPTPGVYYYQVGDGG 122 (614)
T ss_dssp CCCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TCCSTTCEEEEESCHH
T ss_pred cCCCCee----eCCCCcEeccccHHHHHHHHHHHHHhHHHHhhCCChHHHHHHHHHHHHHHHH-hccCCCcEEEEecCCC
Confidence 4778888 45444555567888888999888774 4433 348899999999999998 644447777632 221
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.+ |. .|.+-|+. + ..+....+.
T Consensus 123 ~D------H~------~w~~pe~~-----------------------------~----~~r~~y~v~------------- 144 (614)
T 1g87_A 123 KD------HS------WWGPAEVM-----------------------------Q----MERPSFKVD------------- 144 (614)
T ss_dssp HH------HT------CCSCGGGC-----------------------------C----SCCCEEEEC-------------
T ss_pred cC------cc------ccCCcccC-----------------------------C----CCCcceEec-------------
Confidence 10 00 13211100 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
...|. |+-.+.++.|||.|++++++. ...|. .++|+.|+++++
T Consensus 145 ---------------------~~~pg------sd~a~e~AAAlAaAS~vfk~~--D~~yA--------~~~L~~Ak~l~~ 187 (614)
T 1g87_A 145 ---------------------ASKPG------SAVCASTAASLASAAVVFKSS--DPTYA--------EKCISHAKNLFD 187 (614)
T ss_dssp ---------------------SSSCC------HHHHHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHH
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHH
Confidence 01122 334588999999999999751 11111 578999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIEL 516 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L 516 (714)
|..++--. .+ ...+.. ...++.|+ +++|.++||.+|||..||+.|++.
T Consensus 188 fA~~~~~~--~~-----~~~~~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~a~~~ 237 (614)
T 1g87_A 188 MADKAKSD--AG-----YTAASGYYSSSSFYDD---LSWAAVWLYLATNDSTYLDKAESY 237 (614)
T ss_dssp HHHHHCCC--TT-----CCTTTTTSCCSCSHHH---HHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHcCCC--CC-----CCcCcCCcCCCCchhH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99987421 10 011111 11344444 477899999999999999999863
No 178
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=97.05 E-value=0.00029 Score=78.64 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=50.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHh--------cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLN--------DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln--------~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~ 83 (714)
..||+||..|+.|.... .++++.++ ..++.++||.++.+++.+.| ++.|+|+++|+.+.|.
T Consensus 48 ~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y--------~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 48 LFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY--------DINFVPRLFFFYPRDS 116 (470)
T ss_dssp EEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT--------TCCSSCEEEEEEESSC
T ss_pred EEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc--------CCCccCeEEEEECCCc
Confidence 36899999999999654 45666554 14899999999999999888 8999999999987764
No 179
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=97.04 E-value=0.0015 Score=63.01 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=41.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCC-----------------------------CccHHHHHHHH
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-----------------------------RPDVDKVYMTY 62 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee-----------------------------~p~i~~~y~~~ 62 (714)
.+++||..|+.+..+. + ++.+.+. +++..|.|+.+. ...+.+.|
T Consensus 53 F~a~~C~~C~~~~~~l-~--~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 126 (196)
T 2ywi_A 53 FICNHCPFVKHVQHEL-V--RLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAY--- 126 (196)
T ss_dssp ECCSSCHHHHHHHHHH-H--HHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHH---
T ss_pred EeCCCCccHHHHHHHH-H--HHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHh---
Confidence 5799999999876442 1 2333332 346556655531 22233333
Q ss_pred HHHhcCCCCcCceEEeCCCCcccccc
Q 005115 63 VQALYGGGGWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 63 ~q~~~g~~g~P~~vfl~p~g~p~~~~ 88 (714)
|..++|+++|++++|++++.+
T Consensus 127 -----~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 127 -----DAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp -----TCCEESEEEEEETTCBEEEEE
T ss_pred -----CCCCCCeEEEEcCCCeEEEcc
Confidence 788999999999999998663
No 180
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=96.95 E-value=0.012 Score=65.85 Aligned_cols=183 Identities=20% Similarity=0.208 Sum_probs=110.1
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 298 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~-DAD 298 (714)
.+-||+| |..=.+-+---|-|....|++.|.+ +|... +-+..++.++-.++||++ |...+|+||.-. |.+
T Consensus 69 DlsGGwy----DAGD~~Ky~~~~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk-~~~~~~~~y~qVgd~~ 143 (466)
T 2xfg_A 69 DLTGGWY----DAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIK-CHPEKDVYYYQVGDGH 143 (466)
T ss_dssp CCCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHH-TCSBTTEEEEEESCHH
T ss_pred cCCCCce----eCCCCCeeccccHHHHHHHHHHHHHhHHHHhcCCCchHHHHHHHHHHHHHHH-hccCCCcEEEEeCCCC
Confidence 3778888 4443455556788888999988877 35443 348899999999999998 644457777632 211
Q ss_pred CccccCcccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCC
Q 005115 299 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 378 (714)
Q Consensus 299 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~ 378 (714)
.+ + ..|.+.|+. | ..+....+.
T Consensus 144 ~D------h------~~W~~pe~~-----------------------------~----~~R~~y~i~------------- 165 (466)
T 2xfg_A 144 AD------H------AWWGPAEVM-----------------------------P----MERPSYKVD------------- 165 (466)
T ss_dssp HH------H------TCCSCGGGC-----------------------------C----SCCCEEEEE-------------
T ss_pred cc------c------cccCCcccC-----------------------------C----CCCceeEec-------------
Confidence 10 0 013211100 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 379 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 379 ~~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
...|. |+-.+.++.|||.|++++++. ...|. .++|+.|+++++
T Consensus 166 ---------------------~~~pg------sd~a~e~AAAlAaAS~vfk~~--D~~yA--------~~~L~~Ak~l~~ 208 (466)
T 2xfg_A 166 ---------------------RSSPG------STVVAETSAALAIASIIFKKV--DGEYS--------KECLKHAKELFE 208 (466)
T ss_dssp ---------------------SSSCC------HHHHHHHHHHHHHHHHHTTTT--CHHHH--------HHHHHHHHHHHH
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHH
Confidence 01122 333488899999999999751 11111 578999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CC-CCCcchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005115 459 FIRRHLYDEQTHRLQHSFRNGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIEL 516 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~~g~~--~~-~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L 516 (714)
|..++--. + ....+.. .. .++.|+ +++|.++||.+|||+.||+.|++.
T Consensus 209 fA~~~~~~-----~--~~~~~~~~Y~s~s~~~DE---l~WAAawLy~ATgd~~Yl~~a~~~ 259 (466)
T 2xfg_A 209 FADTTKSD-----D--GYTAANGFYNSWSGFYDE---LSWAAVWLYLATNDSSYLDKAESY 259 (466)
T ss_dssp HHHHHCCC-----T--TCCTTTTTSCCSSCSHHH---HHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHhcCCc-----C--CCCccccccCCCCCCchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99987421 1 0011111 11 334444 578899999999999999999864
No 181
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=96.89 E-value=0.0013 Score=63.22 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=41.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC-------CccHHHHHHH--------------HHHHhcCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-------RPDVDKVYMT--------------YVQALYGGGG 71 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee-------~p~i~~~y~~--------------~~q~~~g~~g 71 (714)
.+++||..|+.+... + .++.+.+.+.+..|.|+.+. .++.-+.|.. .+....|..+
T Consensus 40 F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 116 (188)
T 2cvb_A 40 FMCNHCPYVKGSIGE-L--VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR 116 (188)
T ss_dssp EECSSCHHHHTTHHH-H--HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE
T ss_pred EECCCCccHHHHHHH-H--HHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 578999999976643 1 12333333325555555421 1111111110 0111237889
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
+|+++|++++|++++.
T Consensus 117 ~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 117 TPEVFLFDERRLLRYH 132 (188)
T ss_dssp ESEEEEECTTCBEEEE
T ss_pred CCeEEEECCCCcEEEE
Confidence 9999999999999876
No 182
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=96.84 E-value=0.0017 Score=64.64 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=39.8
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeC
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 79 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~l--n~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~ 79 (714)
++||..|+.|..+ + .++++.+ +.+...++||.++.+++.+.| |+.|+|+.+|+.
T Consensus 34 ~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~~ 89 (229)
T 2ywm_A 34 CESCQTAEELLKE-T--VEVIGEAVGQDKIKLDIYSPFTHKEETEKY--------GVDRVPTIVIEG 89 (229)
T ss_dssp CGGGGHHHHHHHH-H--HHHHHHHHCTTTEEEEEECTTTCHHHHHHT--------TCCBSSEEEEES
T ss_pred CcccHHHHHHHHH-H--HHHHhccCCCCceEEEEecCcccHHHHHHc--------CCCcCcEEEEEC
Confidence 4455555555544 2 3444444 567888899999999999999 899999999996
No 183
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=96.82 E-value=0.0018 Score=56.22 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..++||+||++.. ++|+++=|+. .+|.++.|+..+.+ .+..+|..++|..+| .||+.+.+
T Consensus 9 Ys~~~Cp~C~~aK----------~~L~~~gi~y~~idi~~d~~~~~~~---~~~~~G~~tVP~I~i--~Dg~~l~~ 69 (92)
T 2lqo_A 9 YTTSWCGYCLRLK----------TALTANRIAYDEVDIEHNRAAAEFV---GSVNGGNRTVPTVKF--ADGSTLTN 69 (92)
T ss_dssp EECTTCSSHHHHH----------HHHHHTTCCCEEEETTTCHHHHHHH---HHHSSSSSCSCEEEE--TTSCEEES
T ss_pred EcCCCCHhHHHHH----------HHHHhcCCceEEEEcCCCHHHHHHH---HHHcCCCCEeCEEEE--eCCEEEeC
Confidence 3579999999843 4566554543 37777777755544 233458889998766 57777754
No 184
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=96.81 E-value=0.0081 Score=69.31 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 005115 414 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 491 (714)
Q Consensus 414 Nal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA 491 (714)
.+.++.|||.|++++++. ...|. .++|+.|+++++|..++-- .+......+.. ...++.|++
T Consensus 219 a~~~AAAlAaAS~vfk~~--D~~yA--------~~~L~~Ak~~~~fA~~~~~-----~y~~~~~~~~~~Y~ss~~~DEl- 282 (611)
T 2yik_A 219 ISATAASLAINYMNFKDT--DPQYA--------AKSLDYAKALFDFAEKNPK-----GVVQGEDGPKGYYGSSKWQDDY- 282 (611)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHHHHHHSCC-----CCCCGGGTTTTTSCCCCSHHHH-
T ss_pred HHHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHHcCC-----cccCCCcccCcCCCCCCcccHH-
Confidence 478899999999999751 11111 5789999999999987631 11111111111 113444555
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAIELQ 517 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~~L~ 517 (714)
++|.++||.+|||+.|++.+.+..
T Consensus 283 --~WAAawLy~ATgd~~Yl~~a~~~~ 306 (611)
T 2yik_A 283 --CWAAAWLYLATQNEHYLDEAFKYY 306 (611)
T ss_dssp --HHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 778999999999999999998754
No 185
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=96.80 E-value=0.00029 Score=72.32 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=46.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..|++||..|+.|.... .++++.. .++..++||.++ +++...| ++.|+|+++|+. +|+++..
T Consensus 139 ~Fya~wC~~Ck~l~p~l---~~La~~~-~~v~f~kVd~d~-~~l~~~~--------~I~~~PTll~~~-~G~~v~~ 200 (245)
T 1a0r_P 139 HIYEDGIKGCDALNSSL---ICLAAEY-PMVKFCKIKASN-TGAGDRF--------SSDVLPTLLVYK-GGELLSN 200 (245)
T ss_dssp EEECTTSTTHHHHHHHH---HHHHHHC-TTSEEEEEEHHH-HCCTTSS--------CTTTCSEEEEEE-TTEEEEE
T ss_pred EEECCCChHHHHHHHHH---HHHHHHC-CCCEEEEEeCCc-HHHHHHC--------CCCCCCEEEEEE-CCEEEEE
Confidence 36999999999998542 2344443 347788888877 6666666 789999998885 9998743
No 186
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.79 E-value=0.00097 Score=78.91 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=53.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.|++||..|+.|.... .++++.+..+++.++||.++.+++.+.| |+.|+|+++|+ ++|+.+.
T Consensus 682 F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~~ 743 (780)
T 3apo_A 682 FYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPSVKLY-QYERAKK 743 (780)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-EEETTTT
T ss_pred EECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCCHHHHHhc--------CCCcCCEEEEE-cCCCccc
Confidence 6899999999988654 5678777778999999999999988888 88999999999 8898874
No 187
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.0016 Score=60.04 Aligned_cols=73 Identities=15% Similarity=0.024 Sum_probs=45.7
Q ss_pred CCCCCChh--hHhhhhhhCCCHHHHHHH-h-cccEEEEEcCCCCccHHHHHHH-----------------HHHHhcCCCC
Q 005115 13 RRTHFLIK--CHVMEVESFEDEGVAKLL-N-DWFVSIKVDREERPDVDKVYMT-----------------YVQALYGGGG 71 (714)
Q Consensus 13 ~~t~wC~w--C~~M~~e~f~~~~va~~l-n-~~Fv~vkvD~ee~p~i~~~y~~-----------------~~q~~~g~~g 71 (714)
.+++||.. |+.|....- ++.+.+ . +++..|.|+.++.++.-+.|.. .+....|..+
T Consensus 40 F~a~~C~~v~C~~~~~~l~---~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 116 (150)
T 3fw2_A 40 FWASWNDSISQKQSNSELR---EIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK 116 (150)
T ss_dssp EECTTCCCHHHHHHHHHHH---HHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS
T ss_pred EEeCCCCchHHHHHHHHHH---HHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCc
Confidence 67899999 998774421 233333 2 3366666666655432222221 1122237889
Q ss_pred cCceEEeCCCCcccccc
Q 005115 72 WPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ 88 (714)
+|++++++++|+.+...
T Consensus 117 ~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 117 IPANILLSSDGKILAKN 133 (150)
T ss_dssp SSEEEEECTTSBEEEES
T ss_pred cCeEEEECCCCEEEEcc
Confidence 99999999999998653
No 188
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=96.77 E-value=0.0028 Score=59.54 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=41.2
Q ss_pred CC-CCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH--------------HHHHhcCCCC----c
Q 005115 13 RR-THFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------YVQALYGGGG----W 72 (714)
Q Consensus 13 ~~-t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~p~i~~~y~~--------------~~q~~~g~~g----~ 72 (714)
.+ ++||..|..+...- .++.+.+. +++..|-|+.|. ++.-+.|.+ .+....|..| .
T Consensus 36 F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~ 111 (161)
T 3drn_A 36 FYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDD-INSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA 111 (161)
T ss_dssp ECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCC-HHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred EEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc
Confidence 45 99999999976542 22333333 345555555552 211111110 1111126778 9
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|++++.
T Consensus 112 P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 112 RITFVIDKKGIIRHI 126 (161)
T ss_dssp CEEEEECTTSBEEEE
T ss_pred ceEEEECCCCEEEEE
Confidence 999999999999755
No 189
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=96.77 E-value=0.00062 Score=72.71 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=44.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 81 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~ 81 (714)
.||+||++|+.|...- .++++.+.. +++.++||.++.+ .+.| ++.|+|+++|+..+
T Consensus 274 f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~--~~~~--------~v~~~Pt~~~~~~~ 331 (361)
T 3uem_A 274 FYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE--VEAV--------KVHSFPTLKFFPAS 331 (361)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB--CSSC--------CCCSSSEEEEECSS
T ss_pred EecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc--hhhc--------CCcccCeEEEEECC
Confidence 5899999999998654 456666655 4999999999876 2334 78999999999665
No 190
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=96.73 E-value=0.0014 Score=60.03 Aligned_cols=69 Identities=9% Similarity=0.018 Sum_probs=43.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHH------------------HHHHhcCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMT------------------YVQALYGGG 70 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln----~~Fv~vkvD~ee~p~i~~~y~~------------------~~q~~~g~~ 70 (714)
.+++||..|+.|.. .+.++.+ +++..|-|+.++.++--+.|.. .+....|..
T Consensus 39 F~a~wC~~C~~~~~------~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 112 (143)
T 4fo5_A 39 FWAAYDAESRARNV------QLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLR 112 (143)
T ss_dssp EECTTCHHHHHHHH------HHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGG
T ss_pred EEcCcCHHHHHHHH------HHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCC
Confidence 67999999999873 3555444 2466666666544322111111 111223778
Q ss_pred CcCceEEeCCCCccccc
Q 005115 71 GWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~ 87 (714)
++|++++++++|+.+..
T Consensus 113 ~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 113 KGFKNFLINDEGVIIAA 129 (143)
T ss_dssp GCCCEEEECTTSBEEEE
T ss_pred CCCcEEEECCCCEEEEc
Confidence 99999999999999865
No 191
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=96.72 E-value=0.0014 Score=64.98 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCCC-CChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCcCceEEeCCCCcc
Q 005115 13 RRTH-FLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 84 (714)
Q Consensus 13 ~~t~-wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p 84 (714)
.|++ ||++|+.|... + .++++. +.++..++||.++ .+++.+.| |..++|+.+|+ .+|+.
T Consensus 29 f~~~~~C~~C~~~~~~-~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~ 90 (226)
T 1a8l_A 29 FVRKDHCQYCDQLKQL-V--QELSEL-TDKLSYEIVDFDTPEGKELAKRY--------RIDRAPATTIT-QDGKD 90 (226)
T ss_dssp EECSSSCTTHHHHHHH-H--HHHHTT-CTTEEEEEEETTSHHHHHHHHHT--------TCCSSSEEEEE-ETTBC
T ss_pred EecCCCCchhHHHHHH-H--HHHHhh-CCceEEEEEeCCCcccHHHHHHc--------CCCcCceEEEE-cCCce
Confidence 5788 99999999865 3 235543 5678888999998 88888888 88999999998 45553
No 192
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=96.68 E-value=0.0028 Score=60.71 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCCC-ccHHHHHHHH----------------HHHh---cCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTY----------------VQAL---YGGGG 71 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee~-p~i~~~y~~~----------------~q~~---~g~~g 71 (714)
.+++||..|+.|..+. .++.+.+. +++..|.|+.+.. ++--+.|.+. .+.+ .+..|
T Consensus 67 F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 143 (186)
T 1jfu_A 67 LWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG 143 (186)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSS
T ss_pred EEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCC
Confidence 5799999999987653 23444444 4555555554432 2222222211 1111 11148
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
+|++++++++|+.++.
T Consensus 144 ~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 144 MPTSVLVDPQGCEIAT 159 (186)
T ss_dssp SSEEEEECTTSBEEEE
T ss_pred CCEEEEECCCCCEEEE
Confidence 9999999999998854
No 193
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=96.67 E-value=0.00094 Score=75.53 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=48.7
Q ss_pred ccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 11 KTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 11 ~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
...+++||++|+.|..- | .+++ ..|.+...++||.++.|++.+.| |..++|+.++ +|+.+..
T Consensus 122 ~~f~a~~C~~C~~~~~~-l--~~~a-~~~~~v~~~~vd~~~~~~~~~~~--------~i~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 122 ETYYSLSCHNCPDVVQA-L--NLMA-VLNPRIKHTAIDGGTFQNEITER--------NVMGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp EEEECTTCSSHHHHHHH-H--HHHH-HHCTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEE---TTEEEEE
T ss_pred EEEECCCCcCcHHHHHH-H--HHHH-hHcCceEEEEEechhhHHHHHHh--------CCCccCEEEE---CCEEEec
Confidence 45679999999998753 2 2233 34567778889999999999999 8999999977 8998854
No 194
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.64 E-value=0.0011 Score=78.49 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=45.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.|++||+.|+.|..+- .++++.++..+..++||.++.+++.+.| |+.|+|+.+|+ .+|+.+
T Consensus 140 Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~g~~~ 200 (780)
T 3apo_A 140 FYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPSLFIF-RSGMAA 200 (780)
T ss_dssp EECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCSSCC----------------CEEEEE-CTTSCC
T ss_pred EeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCcHHHHHHc--------CCceeeeEEEE-eCCcEe
Confidence 6999999999999764 6788888878999999999999999988 88999998887 577754
No 195
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=96.62 E-value=0.00028 Score=70.96 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=44.9
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..|++||..|+.|.... .++++.+ .++..++||.+ .|++...| +..++|+++|+. +|+++.
T Consensus 126 ~F~a~wC~~C~~l~p~l---~~la~~~-~~v~f~~vd~~-~~~l~~~~--------~i~~~PTl~~~~-~G~~v~ 186 (217)
T 2trc_P 126 NIYEDGVRGCDALNSSL---ECLAAEY-PMVKFCKIRAS-NTGAGDRF--------SSDVLPTLLVYK-GGELIS 186 (217)
T ss_dssp EEECTTSTTHHHHHHHH---HHHHTTC-TTSEEEEEEHH-HHTCSTTS--------CGGGCSEEEEEE-TTEEEE
T ss_pred EEECCCCccHHHHHHHH---HHHHHHC-CCeEEEEEECC-cHHHHHHC--------CCCCCCEEEEEE-CCEEEE
Confidence 36899999999998542 2233322 35778888887 67777666 788999999885 999873
No 196
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=96.61 E-value=0.00083 Score=70.55 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=40.9
Q ss_pred cccCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcC----CCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 10 TKTRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDR----EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 10 ~~~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~----ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
-...||+||+.|+.|+. .|+.- + +.+-.|++|. ++.|++.+.| |..|+|+.+ + +|+++
T Consensus 201 vV~F~A~WC~~Ck~l~p-~le~l--A----~~l~~Vd~d~~d~~~~~~~la~~~--------gI~~vPT~~-i--~G~~~ 262 (291)
T 3kp9_A 201 GTMYGAYWCPHCQDQKE-LFGAA--F----DQVPYVECSPNGPGTPQAQECTEA--------GITSYPTWI-I--NGRTY 262 (291)
T ss_dssp CEEEECTTCHHHHHHHH-HHGGG--G----GGSCEEESCSSCSSSCCCHHHHTT--------TCCSTTEEE-E--TTEEE
T ss_pred EEEEECCCCHHHHHHHH-HHHHH--H----HHcCEEEEeecCchhhHHHHHHHc--------CCcccCeEE-E--CCEEe
Confidence 45679999999999985 34432 2 2333456663 4478888877 899999954 4 88874
Q ss_pred c
Q 005115 86 M 86 (714)
Q Consensus 86 ~ 86 (714)
.
T Consensus 263 ~ 263 (291)
T 3kp9_A 263 T 263 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 197
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=96.58 E-value=0.0023 Score=68.96 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=44.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCCC-----CccHHHHHH---------------HHHHHhcCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-----RPDVDKVYM---------------TYVQALYGGGG 71 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~ee-----~p~i~~~y~---------------~~~q~~~g~~g 71 (714)
.+++||..|+.|.... .++.+.+. +++..|.|+.++ .|+--+.|. ...+ ..+..+
T Consensus 89 F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~-~ygV~~ 164 (352)
T 2hyx_A 89 FWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWT-NYRNRY 164 (352)
T ss_dssp EECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHH-HTTCCE
T ss_pred EECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHH-HcCCCc
Confidence 6899999999987542 23444443 357777776543 122111111 1111 237889
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
+|+++|++++|+++..
T Consensus 165 ~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 165 WPAEYLIDATGTVRHI 180 (352)
T ss_dssp ESEEEEECTTSBEEEE
T ss_pred cCEEEEEeCCCeEEEE
Confidence 9999999999999864
No 198
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=96.48 E-value=0.0059 Score=60.69 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=42.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCC-----------------------------CCccHHHHHHHH
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-----------------------------ERPDVDKVYMTY 62 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~e-----------------------------e~p~i~~~y~~~ 62 (714)
.+++||..|..+...- .++.+.+. +++..|.|+.+ +...+.+.|
T Consensus 66 F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~--- 139 (218)
T 3u5r_E 66 FISNRCPFVVLIREAL---AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAY--- 139 (218)
T ss_dssp ECCSSCHHHHTTHHHH---HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHH---
T ss_pred EECCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHc---
Confidence 6789999998876441 22333333 33555555552 122333444
Q ss_pred HHHhcCCCCcCceEEeCCCCccccccc
Q 005115 63 VQALYGGGGWPLSVFLSPDLKPLMGGT 89 (714)
Q Consensus 63 ~q~~~g~~g~P~~vfl~p~g~p~~~~t 89 (714)
|..++|++++++++|++++.+.
T Consensus 140 -----~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 140 -----GAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp -----TCCEESEEEEECTTCBEEEEEC
T ss_pred -----CCCCCCeEEEECCCCcEEEecc
Confidence 7889999999999999987653
No 199
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=96.36 E-value=0.0025 Score=57.39 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=45.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHH-hcccEEEEEcCCCCcc----HHHHHHHHHHHhcCCC-CcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPD----VDKVYMTYVQALYGGG-GWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~l-n~~Fv~vkvD~ee~p~----i~~~y~~~~q~~~g~~-g~P~~vfl~p~g~p~~ 86 (714)
.+++||+.|++|... +.++. ..+.-.++||.++.++ |...| |+. ..|+.+++ .+|++++
T Consensus 31 khatwCgpc~~~~~~------~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~--------~V~h~sPq~il~-k~G~~v~ 95 (112)
T 3iv4_A 31 KHSETCPISANAYDQ------FNKFLYERDMDGYYLIVQQERDLSDYIAKKT--------NVKHESPQAFYF-VNGEMVW 95 (112)
T ss_dssp EECTTCHHHHHHHHH------HHHHHHHHTCCEEEEEGGGGHHHHHHHHHHH--------TCCCCSSEEEEE-ETTEEEE
T ss_pred EECCcCHhHHHHHHH------HHHHhccCCceEEEEEeecCchhhHHHHHHh--------CCccCCCeEEEE-ECCEEEE
Confidence 479999999999854 33333 2456677888888766 66777 877 59999888 5999987
Q ss_pred cc
Q 005115 87 GG 88 (714)
Q Consensus 87 ~~ 88 (714)
..
T Consensus 96 ~~ 97 (112)
T 3iv4_A 96 NR 97 (112)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 200
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=96.35 E-value=0.0014 Score=57.42 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e--e~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|++|.. .++. +.+++-..+||.+ +.+++.+.| | .+.|+. |+ +|+.+
T Consensus 22 f~~~~C~~C~~~~~-~L~~------l~~~i~~~~vdi~~~~~~el~~~~--------g-~~vP~l-~~--~g~~~ 77 (100)
T 1wjk_A 22 FTKAPCPLCDEAKE-VLQP------YKDRFILQEVDITLPENSTWYERY--------K-FDIPVF-HL--NGQFL 77 (100)
T ss_dssp EECSSCHHHHHHHH-HTST------TSSSSEEEEEETTSSTTHHHHHHS--------S-SSCSEE-EE--SSSEE
T ss_pred EeCCCCcchHHHHH-HHHH------hhhCCeEEEEECCCcchHHHHHHH--------C-CCCCEE-EE--CCEEE
Confidence 57899999999874 3431 1123445566666 556666555 7 899964 54 67764
No 201
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=96.30 E-value=0.0025 Score=68.77 Aligned_cols=64 Identities=16% Similarity=-0.096 Sum_probs=48.6
Q ss_pred CCCCCChhhHhhhhhh---CCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVES---FEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~---f~~~~va~~ln~-~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.||+||+.|..+.+=. -.=.++++.+.. ++..++||.++.+++.+.| |+.|+|+.+|+. +|+++
T Consensus 37 FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~V~~~PTl~~f~-~G~~~ 104 (367)
T 3us3_A 37 YHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL--------GLTEEDSIYVFK-EDEVI 104 (367)
T ss_dssp EECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHH--------TCCSTTEEEEEE-TTEEE
T ss_pred EECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHc--------CCCcCceEEEEE-CCcEE
Confidence 6999998874433111 012356777765 5889999999999999999 999999999997 68875
No 202
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=96.28 E-value=0.0025 Score=52.98 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=36.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCc----cHHHHHHHHHHHhcC--CCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP----DVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p----~i~~~y~~~~q~~~g--~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.|.. .++. +++. +.++-.+++|.++.| ++.+.| | ..++|+. |+ +|+.+.
T Consensus 6 f~~~~C~~C~~~~~-~l~~--l~~~-~~~i~~~~vdi~~~~~~~~~l~~~~--------~~~~~~vP~i-~~--~g~~i~ 70 (85)
T 1ego_A 6 FGRSGCPYCVRAKD-LAEK--LSNE-RDDFQYQYVDIRAEGITKEDLQQKA--------GKPVETVPQI-FV--DQQHIG 70 (85)
T ss_dssp ECCTTSTHHHHHHH-HHHH--HHHH-HSSCEEEEECHHHHTCCSHHHHHHT--------CCCSCCSCEE-EE--TTEEEE
T ss_pred EeCCCCCCHHHHHH-HHHH--HHhc-CCCceEEEEecccChHHHHHHHHHh--------CCCCceeCeE-EE--CCEEEE
Confidence 46899999999874 2322 2221 245556667765433 344433 6 7899997 44 677764
No 203
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=96.18 E-value=0.0026 Score=59.92 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=40.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+++||++|+.+.. +.+.++-.|..|.||.++. |++ ...+...+|..++|+.+ + +|+.+.+
T Consensus 54 f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~----~~~L~~~~g~~tvP~if-i--~G~~igG 115 (146)
T 2ht9_A 54 FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQF----QDALYKMTGERTVPRIF-V--NGTFIGG 115 (146)
T ss_dssp EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHH----HHHHHHHHSCCCSCEEE-E--TTEEEES
T ss_pred EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHH----HHHHHHHhCCCCcCeEE-E--CCEEEeC
Confidence 57899999999874 3445677888888877632 332 22233345889999874 4 7777643
No 204
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=96.18 E-value=0.002 Score=58.38 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=42.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|++||..|+.|... | .++++.. .+..-+|||.|+.+ +.| +..+.|+.+|+. +|+++..
T Consensus 30 F~a~wc~~C~~~~p~-l--~~la~~~-~~v~f~kvd~d~~~---~~~--------~v~~~PT~~~fk-~G~~v~~ 88 (118)
T 3evi_A 30 LYRSSIPMCLLVNQH-L--SLLARKF-PETKFVKAIVNSCI---QHY--------HDNCLPTIFVYK-NGQIEAK 88 (118)
T ss_dssp EECTTSHHHHHHHHH-H--HHHHHHC-TTSEEEEEEGGGTS---TTC--------CGGGCSEEEEEE-TTEEEEE
T ss_pred EeCCCChHHHHHHHH-H--HHHHHHC-CCCEEEEEEhHHhH---HHC--------CCCCCCEEEEEE-CCEEEEE
Confidence 699999999999943 2 2344433 34566788888752 344 788999998885 8998854
No 205
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=96.12 E-value=0.0079 Score=55.88 Aligned_cols=35 Identities=3% Similarity=-0.183 Sum_probs=24.2
Q ss_pred CcC--ceEEeCCCCcccccc-cccCCCCCCCCccHHHHHHHHH
Q 005115 71 GWP--LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P--~~vfl~p~g~p~~~~-ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
|+| ++++++++|+.++.. +..+. .+.+.++++.|.
T Consensus 119 ~~p~~~~~lid~~G~i~~~~~g~~~~-----~~~~~~l~~~l~ 156 (160)
T 1xvw_A 119 GIANRGTFVVDRSGIIRFAEMKQPGE-----VRDQRLWTDALA 156 (160)
T ss_dssp TEECSEEEEECTTSBEEEEEECCTTC-----CCCHHHHHHHHH
T ss_pred CCeeeeEEEECCCCeEEEEEecCCCC-----CCCHHHHHHHHH
Confidence 899 999999999998653 22322 235667766654
No 206
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=96.01 E-value=0.0055 Score=59.52 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=15.7
Q ss_pred CcCceEEeCCCCccccc
Q 005115 71 GWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~ 87 (714)
++|++++++++|+.++.
T Consensus 131 ~~P~~~lid~~G~i~~~ 147 (195)
T 2bmx_A 131 ADRVTFIVDPNNEIQFV 147 (195)
T ss_dssp BCEEEEEECTTSBEEEE
T ss_pred ccceEEEEcCCCeEEEE
Confidence 89999999999999865
No 207
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.97 E-value=0.0092 Score=54.64 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.|.. +.+.++-.|..|.||.++. |++ +..+...+|..++|+.+ + +|+.+.
T Consensus 32 f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~----~~~l~~~~g~~~vP~l~-i--~G~~ig 92 (130)
T 2cq9_A 32 FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQF----QDALYKMTGERTVPRIF-V--NGTFIG 92 (130)
T ss_dssp EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHH----HHHHHHHHSSCCSSEEE-E--TTEEEE
T ss_pred EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHH----HHHHHHHhCCCCcCEEE-E--CCEEEc
Confidence 56899999999874 3445677888777776532 332 22233445889999874 4 677663
No 208
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=95.94 E-value=0.058 Score=59.13 Aligned_cols=79 Identities=24% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
+=++.+|..+++++++ ++|++.|.++++.+.+. |.+ ....++....|=.+
T Consensus 292 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~------g~~--------~~~~~lChG~aG~~ 341 (411)
T 3e6u_A 292 PGVIYMLIQAYKVFRE----------------EKYLCDAYQCADVIWQY------GLL--------KKGYGLCHGSAGNA 341 (411)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHH------CSB--------TTCSCSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHhc------Ccc--------CCCCceecChHHHH
Confidence 3456678888999988 78999999988776543 111 12246778888889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
+.++.+|+.|++++|+++|.++++.+.+.
T Consensus 342 ~~ll~~~~~t~~~~~~~~A~~~~~~~~~~ 370 (411)
T 3e6u_A 342 YAFLTLYNLTQDMKYLYRACKFAEWCLEY 370 (411)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887654
No 209
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=95.94 E-value=0.0076 Score=55.02 Aligned_cols=61 Identities=5% Similarity=-0.097 Sum_probs=48.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC--cCceEEeCC-CCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG--WPLSVFLSP-DLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g--~P~~vfl~p-~g~p~ 85 (714)
.+++ |..|+.|.. .| .++|+-+...+.-++||.++.|++.+.| |..+ .|+.+++.. +|++.
T Consensus 30 f~a~-~~~c~~~~p-~l--~~~A~~~~gk~~f~~vd~d~~~~~a~~~--------gi~~~~iPtl~i~~~~~g~~~ 93 (133)
T 2djk_A 30 FAET-AEERKELSD-KL--KPIAEAQRGVINFGTIDAKAFGAHAGNL--------NLKTDKFPAFAIQEVAKNQKF 93 (133)
T ss_dssp ECSC-SSSHHHHHH-HH--HHHHHSSTTTSEEEEECTTTTGGGTTTT--------TCCSSSSSEEEEECTTTCCBC
T ss_pred EecC-hhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHHhHHHHHHc--------CCCcccCCEEEEEecCcCccc
Confidence 4677 889997764 44 4577777667899999999999999888 8888 999999984 67763
No 210
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=95.69 E-value=0.14 Score=56.71 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=67.4
Q ss_pred cCCCCCC---CCCCCChhHHH---HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEec-----C
Q 005115 167 RFGGFGS---APKFPRPVEIQ---MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 235 (714)
Q Consensus 167 ~~GGfg~---apKFP~~~~l~---~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsv-----D 235 (714)
..|||-. --||-.|+... +++-+......-.....-+++++.+..-++-|.+- +.-.|+|| +.| |
T Consensus 50 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~D~llk~---~~~~~~~y-~qVgd~~~D 125 (441)
T 1ia6_A 50 LTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKS---HPNSTTFY-YQVGEGNAD 125 (441)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHT---CCSTTCEE-EEESCHHHH
T ss_pred CCCCeeeCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcCcHHHHHHHHHHHHHHHHHh---ccCCCcEE-EEeCCCCcc
Confidence 5699955 46876665432 33233221100000112478999999999998882 22234444 233 3
Q ss_pred C-CCCCCCCchh---H-H---------H-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHh
Q 005115 236 E-RWHVPHFEKM---L-Y---------D-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRD 283 (714)
Q Consensus 236 ~-~W~vPHFEKM---L-y---------D-NA~ll~~y~~Ay~~t~d------~~y~~~A~~~~~fl~~~ 283 (714)
. -|..|.-.+| . | | .+..+.+++.|+++.++ ..+++.|++.++|..++
T Consensus 126 h~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 194 (441)
T 1ia6_A 126 HTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKAN 194 (441)
T ss_dssp TTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 3 4565543222 1 2 3 57889999999999874 45667889999998874
No 211
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=95.66 E-value=0.0072 Score=52.47 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcc---cEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~---Fv~vkvD~ee~-p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.|..- .+.++.. |..|.||.+.. |.+. ..+....|..++|+. |+ +|+.+.
T Consensus 17 f~~~~C~~C~~~~~~-------L~~~~~~~~~~~~vdi~~~~~~~~~~----~~l~~~~g~~~vP~i-~~--~g~~i~ 80 (105)
T 1kte_A 17 FIKPTCPFCRKTQEL-------LSQLPFKEGLLEFVDITATSDTNEIQ----DYLQQLTGARTVPRV-FI--GKECIG 80 (105)
T ss_dssp EECSSCHHHHHHHHH-------HHHSCBCTTSEEEEEGGGSTTHHHHH----HHHHHHHSCCCSCEE-EE--TTEEEE
T ss_pred EEcCCCHhHHHHHHH-------HHHcCCCCCccEEEEccCCCCHHHHH----HHHHHHhCCCCcCeE-EE--CCEEEe
Confidence 578999999997632 2334444 77666665431 2211 222233588999996 44 677663
No 212
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=95.60 E-value=0.0081 Score=55.77 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=41.7
Q ss_pred CCCCCChh-hHhhhhhhCCCHHHHHHHhc-----c--cEEEEEcCCC-CccHHHHHHH-----------------HHHHh
Q 005115 13 RRTHFLIK-CHVMEVESFEDEGVAKLLND-----W--FVSIKVDREE-RPDVDKVYMT-----------------YVQAL 66 (714)
Q Consensus 13 ~~t~wC~w-C~~M~~e~f~~~~va~~ln~-----~--Fv~vkvD~ee-~p~i~~~y~~-----------------~~q~~ 66 (714)
.+++||.. |..+.... .++.+.+.+ + ||.|-+|.+. .|+.-+.|.+ .+...
T Consensus 30 f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~ 106 (164)
T 2ggt_A 30 FGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA 106 (164)
T ss_dssp EECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHT
T ss_pred EEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHh
Confidence 47899998 99876442 234444443 4 4455555432 2332222221 01122
Q ss_pred cCCCCcC---------------ceEEeCCCCccccc
Q 005115 67 YGGGGWP---------------LSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P---------------~~vfl~p~g~p~~~ 87 (714)
.|..+.| ++++++++|+.+..
T Consensus 107 ~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 107 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp TTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred cCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 3677788 89999999999854
No 213
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=95.53 E-value=0.56 Score=52.29 Aligned_cols=120 Identities=8% Similarity=0.023 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCC--------CCCc---chH---HHHHHHHHHHHHHcCChHHH
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKA--------PGFL---DDY---AFLISGLLDLYEFGSGTKWL 510 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~--~~~g~~~~--------~~~l---~Dy---A~li~all~LyeaTgd~~~L 510 (714)
+++++.|+++.+-.........+|..-.. +..+.... .++. ..| -.+|+.+.-||++|||+.|+
T Consensus 313 ~~~~~~a~~l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yr 392 (475)
T 2ri9_A 313 QDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYR 392 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcEEEeecCcccccccccccCCCceecccccCCChHHHHHHHHHHHHhCCHHHH
Confidence 78999999998876543322123422211 11111100 0110 112 25899999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005115 511 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 574 (714)
Q Consensus 511 ~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~ 574 (714)
+++-++++.+.++..-+ .||-.... +........++.++|- .+++-|-=|+.+..+
T Consensus 393 ~~gw~~f~ai~k~~rt~--~G~a~i~d----V~~~~~~~~~D~meSF--~laETLKYlYLLFsd 448 (475)
T 2ri9_A 393 DWVWNAFVAINSTCRTD--SGFAAVSD----VNKANGGSKYDNQESF--LFAEVMKYSYLAHSE 448 (475)
T ss_dssp HHHHHHHHHHHHHTBCS--SSBCCBSC----TTSGGGSSBBSCCCTH--HHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHccc--cCCccccc----ccCCCCCCcCCccchH--HHHHHHHHHHhcccC
Confidence 99999999999887543 34433211 1010002223445553 566666666766654
No 214
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=95.50 E-value=0.017 Score=47.35 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+.+... .+.++-.|. ++|.++.|++.+.+. -.|..+.|+. |. +|+.+
T Consensus 6 f~~~~C~~C~~~~~~-------l~~~~i~~~--~vdi~~~~~~~~~~~-----~~g~~~vP~~-~~--~g~~~ 61 (81)
T 1h75_A 6 YTRNDCVQCHATKRA-------MENRGFDFE--MINVDRVPEAAEALR-----AQGFRQLPVV-IA--GDLSW 61 (81)
T ss_dssp EECTTCHHHHHHHHH-------HHHTTCCCE--EEETTTCHHHHHHHH-----HTTCCSSCEE-EE--TTEEE
T ss_pred EcCCCChhHHHHHHH-------HHHCCCCeE--EEECCCCHHHHHHHH-----HhCCCccCEE-EE--CCEEE
Confidence 468999999998642 223444555 456666666555432 1488999987 44 56665
No 215
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=95.47 E-value=0.0065 Score=54.14 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=35.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.+.. .++.-.+. +.+|..|.||.+ |+-... +..+...+|..++|+. |+ +|+.+.
T Consensus 24 f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~~~--~~~~~~-~~~l~~~~g~~~vP~v-~i--~g~~ig 87 (114)
T 2hze_A 24 FVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEF--KPENEL-RDYFEQITGGKTVPRI-FF--GKTSIG 87 (114)
T ss_dssp EECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGGGS--SSHHHH-HHHHHHHHSCCSSCEE-EE--TTEEEE
T ss_pred EEeCCChhHHHHHH-HHHHcCCC---cCceEEEEccCC--CChHHH-HHHHHHHhCCCCcCEE-EE--CCEEEe
Confidence 46899999998763 33332211 011666666544 321111 1222233489999975 44 677763
No 216
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=95.47 E-value=0.012 Score=60.23 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=42.3
Q ss_pred CC--CCCChhhHhhhhhhCCCHHHHHHHh---cccEEEEEcCCC-----CccHHHHHHHHHHHhcCCC--CcCceEEeCC
Q 005115 13 RR--THFLIKCHVMEVESFEDEGVAKLLN---DWFVSIKVDREE-----RPDVDKVYMTYVQALYGGG--GWPLSVFLSP 80 (714)
Q Consensus 13 ~~--t~wC~wC~~M~~e~f~~~~va~~ln---~~Fv~vkvD~ee-----~p~i~~~y~~~~q~~~g~~--g~P~~vfl~p 80 (714)
+| |+||+ |.. .| .++++.+. .+.+.++||.++ .+++.+.| |+. |+|+.+|+.
T Consensus 40 Fy~~ApWCg----l~P-~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~--------~V~~~~~PTl~~F~- 103 (248)
T 2c0g_A 40 FDIASPYGE----KHE-AF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY--------KVDDKNFPSIFLFK- 103 (248)
T ss_dssp EEESSCCSH----HHH-HH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT--------TCCTTSCCEEEEES-
T ss_pred EECCCCCCc----cHH-HH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh--------CCCcCCCCeEEEEe-
Confidence 57 89998 553 33 35777663 478999999887 78898888 888 999999997
Q ss_pred CCc
Q 005115 81 DLK 83 (714)
Q Consensus 81 ~g~ 83 (714)
|+
T Consensus 104 -G~ 105 (248)
T 2c0g_A 104 -GN 105 (248)
T ss_dssp -SS
T ss_pred -CC
Confidence 76
No 217
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=95.46 E-value=0.034 Score=51.74 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=15.6
Q ss_pred CCcC---ceEEeCCCCccccc
Q 005115 70 GGWP---LSVFLSPDLKPLMG 87 (714)
Q Consensus 70 ~g~P---~~vfl~p~g~p~~~ 87 (714)
.+.| ++++++++|+++..
T Consensus 129 ~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 129 DDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp SCCCSTTCEEEECTTSCEEEE
T ss_pred CcccccccEEEECCCCCEEEe
Confidence 5678 99999999999864
No 218
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=95.46 E-value=0.022 Score=49.65 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+++.. +.+.++-.|-.|.||..+.++.. .+...+..++|..++|+.++ + +|+.+
T Consensus 27 y~~~~Cp~C~~ak~-------~L~~~~i~y~~vdI~~~~~~~~~-~~~~~l~~~~g~~~vP~l~i-~-~~~~i 89 (103)
T 3nzn_A 27 YGLSTCVWCKKTKK-------LLTDLGVDFDYVYVDRLEGKEEE-EAVEEVRRFNPSVSFPTTII-N-DEKAI 89 (103)
T ss_dssp EECSSCHHHHHHHH-------HHHHHTBCEEEEEGGGCCHHHHH-HHHHHHHHHCTTCCSCEEEE-T-TTEEE
T ss_pred EcCCCCchHHHHHH-------HHHHcCCCcEEEEeeccCcccHH-HHHHHHHHhCCCCccCEEEE-C-CCEEE
Confidence 46899999999773 34556777888888864322222 23334455679999999776 2 23555
No 219
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=95.41 E-value=0.78 Score=51.83 Aligned_cols=288 Identities=15% Similarity=0.130 Sum_probs=157.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEee
Q 005115 237 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 316 (714)
Q Consensus 237 ~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~W 316 (714)
+-.|+-||-. -++|-.++-||.+++++.|++.|.+..+-|+--+-.|.|-=|+..+-....... .+..+. +
T Consensus 162 d~~VsvFETt----IR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~~--~~~~~~--s- 232 (538)
T 1x9d_A 162 DVDVNLFEST----IRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHP--PRWTSD--S- 232 (538)
T ss_dssp SCEEEHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEEC--CTTCSE--E-
T ss_pred Cceeehhhee----hhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccCC--CCcCCC--c-
Confidence 3456668854 458888999999999999999999999999988877777545444322100000 000000 0
Q ss_pred chHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 317 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 317 t~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
...|+-.+.= + |. .++...| ..+..+..+.+.+.|...
T Consensus 233 ~lAe~GSl~L-E---F~------------------------------------~LS~LTG--d~~Y~~~a~r~~~~l~~~ 270 (538)
T 1x9d_A 233 TVAEVTSIQL-E---FR------------------------------------ELSRLTG--DKKFQEAVEKVTQHIHGL 270 (538)
T ss_dssp EHHHHHSSHH-H---HH------------------------------------HHHHHHC--CTHHHHHHHHHHHHHHTC
T ss_pred eeccccceee-e---HH------------------------------------HHHHHhC--CcHHHHHHHHHHHHHHhc
Confidence 0111110000 0 00 0111111 112333444555555544
Q ss_pred hhcCCCCCC-----Ccc-------hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH
Q 005115 397 RSKRPRPHL-----DDK-------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR 461 (714)
Q Consensus 397 R~~R~~P~~-----DdK-------ilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~ 461 (714)
|. ..|.+ |.. -..+|.|..-+ =|.+.+..++. ..+.|+++=.++++-|.
T Consensus 271 ~~--~~~GL~p~~i~~~tG~~~~~~~~~lGa~~DS~YEYLlK~~il~g~--------------~d~~y~~my~~a~~~i~ 334 (538)
T 1x9d_A 271 SG--KKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGK--------------QETQLLEDYVEAIEGVR 334 (538)
T ss_dssp SC--CBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTS--------------CCHHHHHHHHHHHHHHH
T ss_pred cc--CCCCCcceEEeCCCCCccCCcceeecCCccHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHHHH
Confidence 32 11211 110 02345444333 46777777773 11789999999999999
Q ss_pred HhccccC--CCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcccccCCc----cc
Q 005115 462 RHLYDEQ--THR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFG-SGTKWLVWAIELQNTQDELFLDREGGG----YF 533 (714)
Q Consensus 462 ~~l~d~~--~G~-l~~~~~~g~~~~~~~l~DyA~li~all~LyeaT-gd~~~L~~A~~L~~~~~~~F~D~~~Gg----ff 533 (714)
+|+.... .+. +...+..|.. ....+--+.++-|++.|.-.. .++++++.|++|.+.+...+....+|- |.
T Consensus 335 ~~L~~~~~~~~~~~v~~~~~g~~--~~~~~hL~cF~gG~~aLgg~~~~~~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~ 412 (538)
T 1x9d_A 335 THLLRHSEPSKLTFVGELAHGRF--SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVH 412 (538)
T ss_dssp HHTEEECTTTCCEEECEEETTEE--ECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEE
T ss_pred HHhccCCCCCCceEEEeccCCcc--CcccchHhhhhhhHHHhcCcccCcHHHHHHHHHHHHHHHHHHHhcccCCCceEEE
Confidence 9985421 232 3222344422 122344455667887776644 567899999999998876654433442 22
Q ss_pred cCCCC---CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 005115 534 NTTGE---DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 601 (714)
Q Consensus 534 ~t~~~---~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p~~ 601 (714)
+.... .....++.. |...+= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.+
T Consensus 413 ~~~~~~~~~~~~~~~~~---d~~y~L-RPE~IES~fylyR~TgD---~~yre~gw~~f~ai~k~~-rt~~G 475 (538)
T 1x9d_A 413 FNLYPQPGRRDVEVKPA---DRHNLL-RPETVESLFYLYRVTGD---RKYQDWGWEILQSFSRFT-RVPSG 475 (538)
T ss_dssp CCSSCCTTCCSCBCCGG---GCCBCC-CCHHHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHT-BCTTS
T ss_pred eccCCCccccceeeecc---CcccCC-ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhc-ccccC
Confidence 22110 111111110 100000 01578999999999996 789999999999976553 45554
No 220
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=95.39 E-value=0.0035 Score=62.29 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=13.2
Q ss_pred CCCCCChhhHhhhhh
Q 005115 13 RRTHFLIKCHVMEVE 27 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e 27 (714)
.+..||++|+.|+.+
T Consensus 93 F~d~~Cp~C~~~~~~ 107 (211)
T 1t3b_A 93 FMDITCHYCHLLHQQ 107 (211)
T ss_dssp EECTTCHHHHHHHTT
T ss_pred EECCCCHhHHHHHHH
Confidence 578999999999965
No 221
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=95.38 E-value=0.036 Score=53.47 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=17.4
Q ss_pred CCCCcC------ceEEeCCCCccccc
Q 005115 68 GGGGWP------LSVFLSPDLKPLMG 87 (714)
Q Consensus 68 g~~g~P------~~vfl~p~g~p~~~ 87 (714)
|..|.| ++++++++|+++..
T Consensus 141 ~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 141 GILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp CGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred CcCCCccccccceEEEECCCCcEEEE
Confidence 667899 99999999999864
No 222
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=95.25 E-value=0.026 Score=54.11 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=15.6
Q ss_pred CcCceEEeCCCCccccc
Q 005115 71 GWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~ 87 (714)
++|++++++++|+.++.
T Consensus 118 ~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 118 ADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp ECEEEEEECTTSBEEEE
T ss_pred eeeEEEEECCCCeEEEE
Confidence 89999999999999865
No 223
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=95.24 E-value=0.037 Score=51.65 Aligned_cols=71 Identities=11% Similarity=-0.083 Sum_probs=41.0
Q ss_pred CCCCCChh-hHhhhhhhCCCHHHHHHHh-----cccEEEEEcCCC---CccHHHHHH------------------HHHHH
Q 005115 13 RRTHFLIK-CHVMEVESFEDEGVAKLLN-----DWFVSIKVDREE---RPDVDKVYM------------------TYVQA 65 (714)
Q Consensus 13 ~~t~wC~w-C~~M~~e~f~~~~va~~ln-----~~Fv~vkvD~ee---~p~i~~~y~------------------~~~q~ 65 (714)
.+++||.. |..+...- .++.+.+. +++..|.|+.+. .|+.-+.|+ ...+
T Consensus 33 F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 108 (171)
T 2rli_A 33 FGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASH- 108 (171)
T ss_dssp EECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHHHH-
T ss_pred EEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH-
Confidence 57899998 99876442 12444442 345444444432 232222222 1222
Q ss_pred hcCCCCcC---------------ceEEeCCCCccccc
Q 005115 66 LYGGGGWP---------------LSVFLSPDLKPLMG 87 (714)
Q Consensus 66 ~~g~~g~P---------------~~vfl~p~g~p~~~ 87 (714)
..|..+.| ++++++++|+.+..
T Consensus 109 ~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 109 SYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 23677777 89999999999864
No 224
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=95.17 E-value=0.021 Score=55.68 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=23.4
Q ss_pred CcCceEEeCCCCccccccc-ccCCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGT-YFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~t-y~p~~~~~~~~~f~~~L~~i~ 110 (714)
++|++++++++|+.++... ..+.. +...++++.|.
T Consensus 126 ~~P~~~lid~~G~i~~~~~g~~~~~-----~~~~ell~~l~ 161 (202)
T 1uul_A 126 AYRGLFIIDPKQNLRQITVNDLPVG-----RDVDEALRLVK 161 (202)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTBC-----CCHHHHHHHHH
T ss_pred eeeEEEEECCCCEEEEEEeCCCCCC-----CCHHHHHHHHH
Confidence 8999999999999986632 22321 24556666554
No 225
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=95.13 E-value=0.032 Score=55.38 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=13.3
Q ss_pred CCCCCChhhHhhhhh
Q 005115 13 RRTHFLIKCHVMEVE 27 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e 27 (714)
.+.+||++|+.|..+
T Consensus 93 F~d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 93 FTDITCGYCHKLHEQ 107 (216)
T ss_dssp EECTTCHHHHHHHTT
T ss_pred EECCCCHHHHHHHHH
Confidence 578999999999876
No 226
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=95.12 E-value=0.69 Score=51.94 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005115 492 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 526 (714)
Q Consensus 492 ~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D 526 (714)
.+|+.+.-||++|||+.|++++-++++.+.++..-
T Consensus 393 E~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~ 427 (503)
T 1hcu_A 393 ETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRA 427 (503)
T ss_dssp HHHHHHHHHHHHHCBHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999988754
No 227
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=95.12 E-value=0.02 Score=51.42 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred CCCCCChhhHhh-hhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M-~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.+ . ..+++... -+-.|..|.||. .|+- ......++..+|..++|+. |+ +|+.+.
T Consensus 30 f~~~~Cp~C~~alk-~~L~~~~~---~~i~~~~vdid~--~~~~-~~~~~~l~~~~g~~tvP~v-fi--~g~~ig 94 (118)
T 3c1r_A 30 ASKTYCPYCHAALN-TLFEKLKV---PRSKVLVLQLND--MKEG-ADIQAALYEINGQRTVPNI-YI--NGKHIG 94 (118)
T ss_dssp EECSSCHHHHHHHH-HHHTTSCC---CGGGEEEEEGGG--STTH-HHHHHHHHHHHSCCSSCEE-EE--TTEEEE
T ss_pred EEcCCCcCHHHHHH-HHHHHcCC---CCCCeEEEECcc--CCCh-HHHHHHHHHHhCCCCcCEE-EE--CCEEEE
Confidence 467999999997 4 32322110 013455555554 4431 1122233344588999975 54 677663
No 228
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=95.11 E-value=0.015 Score=56.57 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=16.0
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|++++++++|+.++..
T Consensus 122 ~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 122 ALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp ECEEEEEEETTTEEEEEE
T ss_pred ccceEEEECCCCEEEEEE
Confidence 899999999999998653
No 229
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=95.10 E-value=0.013 Score=58.46 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=23.8
Q ss_pred CcCceEEeCCCCcccccccc-cCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty-~p~~~~~~~~~f~~~L~~i~~ 111 (714)
++|++++++++|+.++...+ .+.. ....++++.|..
T Consensus 146 ~~P~~~liD~~G~I~~~~~g~~~~~-----~~~~ell~~l~~ 182 (220)
T 1zye_A 146 ALRGLFIIDPNGVIKHLSVNDLPVG-----RSVEETLRLVKA 182 (220)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTCC-----CCHHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHHH
Confidence 89999999999999876422 2321 245555555543
No 230
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=95.09 E-value=0.029 Score=47.19 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=34.1
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~-g~~g~P~~vfl~p~g~p~~ 86 (714)
-.+++||++|+.+.. +.+.++-.|..|.|| ++....+ ...+ |..++|+.++ +|+.+.
T Consensus 10 ~y~~~~C~~C~~~~~-------~L~~~~i~~~~vdv~----~~~~~~l----~~~~~~~~~vP~l~~---~g~~i~ 67 (89)
T 2klx_A 10 LYTRPNCPYCKRARD-------LLDKKGVKYTDIDAS----TSLRQEM----VQRANGRNTFPQIFI---GDYHVG 67 (89)
T ss_dssp EESCSCCTTTHHHHH-------HHHHHTCCEEEECSC----HHHHHHH----HHHHHSSCCSCEEEE---TTEECC
T ss_pred EEECCCChhHHHHHH-------HHHHcCCCcEEEECC----HHHHHHH----HHHhCCCCCcCEEEE---CCEEEe
Confidence 356799999998763 233345566655555 2222212 2234 8899998753 677663
No 231
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.09 E-value=0.23 Score=55.39 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---EecCCCCCCCC---
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFRNGPSKAPG--- 485 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~---~~~~g~~~~~~--- 485 (714)
--|-+++-+|.-||.+.++ +.+|+.|+++++.|.-.|..+ +| +.. ..+.|.+...+
T Consensus 105 ETtIR~LGGLLSAy~Lsgd----------------~~lL~kA~dLad~LlpAFdTp-tg-iP~~~vnl~~g~~~~~~~~~ 166 (478)
T 1nxc_A 105 EVNIRFVGGLLSAYYLSGE----------------EIFRKKAVELGVKLLPAFHTP-SG-IPWALLNMKSGIGRNWPWAS 166 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHGGGGCSS-SS-CCCSEEETTTCCEECCTTSG
T ss_pred heehhhhhhhhhhhhccCC----------------HHHHHHHHHHHHHHHHhhcCC-CC-CCcceeecccccCCCCcccC
Confidence 3467789999999999998 789999999999999888654 44 221 13444322111
Q ss_pred ----CcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cccCCCCCCccccccccCCCCCCCChH
Q 005115 486 ----FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGN 558 (714)
Q Consensus 486 ----~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg---ff~t~~~~~~li~r~k~~~D~a~PS~n 558 (714)
.+...+.++.=+..|.++|||++|.+.|.++.+.+.+.- . ..|- +.+..... . . ..+...=++.
T Consensus 167 ~~~s~lAe~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~-~~GL~p~~i~~~tg~--~----~-~~~~~~Ga~~ 237 (478)
T 1nxc_A 167 GGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLD-K-PEGLYPNYLNPSSGQ--W----G-QHHVSVGGLG 237 (478)
T ss_dssp GGCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSC-C-GGGCCCSEECTTTCC--B----C-SCEECSSTTT
T ss_pred CCCcccccccchhhhHHHHHHHHCChHHHHHHHHHHHHHHhcC-C-CCCccccccCCCCCC--c----c-CceeeecCCC
Confidence 233444566677899999999999999999988776532 1 1232 22211110 0 0 0011111222
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005115 559 SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 596 (714)
Q Consensus 559 svaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~ 596 (714)
-..-+-|++.+.++|.. ++.|++.-.+.+..+...+.
T Consensus 238 DS~YEYLlK~~il~g~~-d~~~~~m~~~a~~~i~~~l~ 274 (478)
T 1nxc_A 238 DSFYEYLLKAWLMSDKT-DLEAKKMYFDAVQAIETHLI 274 (478)
T ss_dssp HHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHTE
T ss_pred chHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999853 36788888777777766653
No 232
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=95.08 E-value=1.5 Score=48.27 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=69.4
Q ss_pred cCCCCCC---CCCCCChhHHH--HH-HHhhh---hhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCC-
Q 005115 167 RFGGFGS---APKFPRPVEIQ--MM-LYHSK---KLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE- 236 (714)
Q Consensus 167 ~~GGfg~---apKFP~~~~l~--~L-l~~~~---~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~- 236 (714)
..|||-. --||-.|+... .| +.+.. .... ...-+++++.+..-++-|.+ .++.. |+|| +.|-.
T Consensus 48 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~---~~~~~d~ldeikwg~D~llk--~~~~~-g~~y-~qVgd~ 120 (433)
T 1ks8_A 48 LTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSS---AGALDDGRKAVKWATDYFIK--AHTSQ-NEFY-GQVGQG 120 (433)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHH---TTCHHHHHHHHHHHHHHHHH--HCCBT-TBEE-EEESCH
T ss_pred CCCceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhc---CCchHHHHHHHHHHHHHHHH--hccCC-CcEE-EEeCCC
Confidence 5699854 46876665432 22 22211 1111 12347889999998888877 55543 5676 45522
Q ss_pred -----CCCCCCCch-------------hHHHHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 005115 237 -----RWHVPHFEK-------------MLYDQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 283 (714)
Q Consensus 237 -----~W~vPHFEK-------------MLyDNA~ll~~y~~Ay~~t~d--~----~y~~~A~~~~~fl~~~ 283 (714)
-|..|.-.. -.-..+..+.+++.|+++.++ + .+++.|++.++|..++
T Consensus 121 ~~Dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 191 (433)
T 1ks8_A 121 DADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNY 191 (433)
T ss_dssp HHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHC
Confidence 567665321 133578899999999999874 4 4667888999998874
No 233
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.034 Score=52.41 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=18.2
Q ss_pred cCCCCcC------ceEEeCCCCccccc
Q 005115 67 YGGGGWP------LSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P------~~vfl~p~g~p~~~ 87 (714)
.|..|+| ++++++++|+++..
T Consensus 123 ~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 123 SGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp CCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred CCcCCCCcccccceEEEECCCCCEEEE
Confidence 4678899 99999999999865
No 234
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=95.03 E-value=0.038 Score=48.29 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=34.6
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
++||++|+.+..- .+-++-.|..|-|| +.|++.+.+ ...+|..++|.. |+ +|+.+.
T Consensus 29 ~~~C~~C~~~~~~-------L~~~~i~~~~vdi~--~~~~~~~~l----~~~~g~~~vP~v-~i--~g~~ig 84 (105)
T 2yan_A 29 EAKCGFSKQILEI-------LNSTGVEYETFDIL--EDEEVRQGL----KAYSNWPTYPQL-YV--KGELVG 84 (105)
T ss_dssp SBCTTHHHHHHHH-------HHHHTCCCEEEEGG--GCHHHHHHH----HHHHTCCSSCEE-EE--TTEEEE
T ss_pred CCCCccHHHHHHH-------HHHCCCCeEEEECC--CCHHHHHHH----HHHHCCCCCCeE-EE--CCEEEe
Confidence 6999999987632 23345566655554 445543322 334588999987 44 677664
No 235
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=95.02 E-value=0.016 Score=48.19 Aligned_cols=60 Identities=12% Similarity=-0.120 Sum_probs=39.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC-----CCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG-----GGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~-----~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.+.. +.+.++-.|-.+.||.++.+.-. ..+..++|. .++|..++ +|+.+.
T Consensus 9 y~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~----~el~~~~g~~~~~~~~vP~i~i---~g~~i~ 73 (89)
T 3msz_A 9 YTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKF----YDEMNQSGKVIFPISTVPQIFI---DDEHIG 73 (89)
T ss_dssp EECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHH----HHHHHTTTCCSSCCCSSCEEEE---TTEEEE
T ss_pred EEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHH----HHHHHHhCCCCCCCCccCEEEE---CCEEEe
Confidence 35699999999763 34556666777777765543211 123345677 89999865 777663
No 236
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=94.89 E-value=0.024 Score=55.01 Aligned_cols=35 Identities=11% Similarity=-0.010 Sum_probs=23.2
Q ss_pred CcCceEEeCCCCcccccc-cccCCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~-ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
++|++++++++|+.++.. +..+.. +.+.++++.|.
T Consensus 124 ~~P~~~lid~~G~i~~~~~g~~~~~-----~~~~e~l~~l~ 159 (197)
T 1qmv_A 124 AYRGLFIIDGKGVLRQITVNDLPVG-----RSVDEALRLVQ 159 (197)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTBC-----CCHHHHHHHHH
T ss_pred eeeEEEEECCCCcEEEEEeCCCCCC-----CCHHHHHHHHH
Confidence 799999999999988653 223321 24566666554
No 237
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=94.82 E-value=0.046 Score=48.25 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..++||++|+++.+ +.+-++-.|..|.||.+. |+ +......+...+|..++|..+ + +|+.+.
T Consensus 24 y~~~~Cp~C~~~~~-------~L~~~~i~~~~~di~~~~-~~-~~~~~~~l~~~~g~~tvP~if-i--~g~~ig 85 (113)
T 3rhb_A 24 YSKTWCSYCTEVKT-------LFKRLGVQPLVVELDQLG-PQ-GPQLQKVLERLTGQHTVPNVF-V--CGKHIG 85 (113)
T ss_dssp EECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGST-TH-HHHHHHHHHHHHSCCSSCEEE-E--TTEEEE
T ss_pred EECCCChhHHHHHH-------HHHHcCCCCeEEEeecCC-CC-hHHHHHHHHHHhCCCCcCEEE-E--CCEEEc
Confidence 45799999998763 334456678777777641 11 112233445567889999974 4 677663
No 238
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=94.80 E-value=0.017 Score=47.35 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+.+.. +.+.++-.|..|.||. .|+....+ ...+|..++|+.++ +|+.+.
T Consensus 6 y~~~~C~~C~~~~~-------~l~~~~i~~~~~~i~~--~~~~~~~~----~~~~~~~~vP~l~~---~g~~i~ 63 (82)
T 1fov_A 6 YTKETCPYCHRAKA-------LLSSKGVSFQELPIDG--NAAKREEM----IKRSGRTTVPQIFI---DAQHIG 63 (82)
T ss_dssp EECSSCHHHHHHHH-------HHHHHTCCCEEEECTT--CSHHHHHH----HHHHSSCCSCEEEE---TTEEEE
T ss_pred EECCCChhHHHHHH-------HHHHCCCCcEEEECCC--CHHHHHHH----HHHhCCCCcCEEEE---CCEEEe
Confidence 45799999999763 2333455677666654 44443333 22358999998753 677663
No 239
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=94.68 E-value=0.0087 Score=60.74 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=23.9
Q ss_pred cCCCCcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 67 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
.|..|+|+++|.+.+|+.....+|.|++ .|.++|+.+
T Consensus 195 ~gv~gtPt~vi~~~~G~~~~~~G~~~~~------~L~~~l~~~ 231 (241)
T 1v58_A 195 LGANVTPAIYYMSKENTLQQAVGLPDQK------TLNIIMGNK 231 (241)
T ss_dssp HTCCSSCEEEEEETTTEEEEEESSCCHH------HHHHHTTC-
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH------HHHHHHHHH
Confidence 3899999999998888752223466643 455555543
No 240
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=94.62 E-value=0.079 Score=57.90 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHH
Q 005115 417 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLI 494 (714)
Q Consensus 417 ~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~DyA~li 494 (714)
.+.++++|+++.+| +...+.+..++..+-- |.+-. ..|.. .......+-.+++
T Consensus 378 yll~~vra~~~s~D----------------~~Lw~~~~~ma~~~~l-------gdi~~--~~~~~~~~~~~~~~~sp~lL 432 (543)
T 2v8i_A 378 FLISYARAYAIDND----------------PLLWKVARGIANDQGL-------GDIGT--APGKEVKVNMDTTNSDPYAL 432 (543)
T ss_dssp HHHHHHHHHHHSCC----------------HHHHHHHHHHHHHTTC-------EECTT--BTTBSCEECTTCCCCCHHHH
T ss_pred hhHHHHHHHHcCCC----------------HHHHHHHHHHHhhCCc-------cccCC--CcCcccccccCCCCcCHHHH
Confidence 68899999999988 6777777776643211 11210 11211 1123345567889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccC
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 535 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t 535 (714)
.|+|+||++|+++.|++.|.++.+.+.+.-++ + |||-.
T Consensus 433 ~allEL~~atq~~~~l~lA~~~g~nl~~~~~~--~-G~Fv~ 470 (543)
T 2v8i_A 433 FALLDLYHASQVADYRKLAEKIGDNIIKIRYI--D-GFFMA 470 (543)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--T-TEECS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc--C-ceecC
Confidence 99999999999999999999999999866544 3 45544
No 241
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=94.56 E-value=0.0098 Score=57.51 Aligned_cols=18 Identities=6% Similarity=-0.287 Sum_probs=16.0
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|++++++++|+..+..
T Consensus 120 ~~P~~~liD~~G~i~~~~ 137 (192)
T 2h01_A 120 ALRAFVLIDKQGVVQHLL 137 (192)
T ss_dssp ECCEEEEECTTSBEEEEE
T ss_pred eeeEEEEEcCCCEEEEEE
Confidence 799999999999998653
No 242
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=94.49 E-value=0.056 Score=45.52 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=39.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
.+++||++|+++.. +.+.++-.|..|.||..+..+ +......+...+|..+.|+.++ +|+.+.
T Consensus 17 y~~~~Cp~C~~~~~-------~L~~~gi~~~~~~v~~~~~~~-~~~~~~~l~~~~g~~~vP~l~~---~g~~i~ 79 (92)
T 3ic4_A 17 YGLSTCPHCKRTLE-------FLKREGVDFEVIWIDKLEGEE-RKKVIEKVHSISGSYSVPVVVK---GDKHVL 79 (92)
T ss_dssp EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCCHHH-HHHHHHHHHHHHSSSCSCEEEE---TTEEEE
T ss_pred EECCCChHHHHHHH-------HHHHcCCCcEEEEeeeCCccc-hHHHHHHHHHhcCCCCcCEEEE---CCEEEe
Confidence 35899999999763 345567788888887532111 1111122233458899999877 777663
No 243
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=94.49 E-value=0.03 Score=44.88 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=35.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+.+..- .+.++-.|.. +|.++.|++.+.+ + ..|..+.|+.++ +|+.+
T Consensus 6 y~~~~C~~C~~~~~~-------l~~~~i~~~~--~di~~~~~~~~~~----~-~~~~~~vP~l~~---~g~~~ 61 (75)
T 1r7h_A 6 YTKPACVQCTATKKA-------LDRAGLAYNT--VDISLDDEARDYV----M-ALGYVQAPVVEV---DGEHW 61 (75)
T ss_dssp EECTTCHHHHHHHHH-------HHHTTCCCEE--EETTTCHHHHHHH----H-HTTCBCCCEEEE---TTEEE
T ss_pred EeCCCChHHHHHHHH-------HHHcCCCcEE--EECCCCHHHHHHH----H-HcCCCccCEEEE---CCeEE
Confidence 467999999997632 2334445554 4555556554433 2 358899999874 67765
No 244
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=94.49 E-value=0.054 Score=47.16 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~-g~~g~P~~vfl~p~g~p~~ 86 (714)
..++||++|+++.+ +.+.++-.|..|.|| +.|+.... +..++ |..++|.. |+ +|+.+.
T Consensus 21 y~~~~Cp~C~~ak~-------~L~~~~i~y~~idI~--~~~~~~~~----l~~~~~g~~~vP~i-fi--~g~~ig 79 (99)
T 3qmx_A 21 YTWSTCPFCMRALA-------LLKRKGVEFQEYCID--GDNEAREA----MAARANGKRSLPQI-FI--DDQHIG 79 (99)
T ss_dssp EECTTCHHHHHHHH-------HHHHHTCCCEEEECT--TCHHHHHH----HHHHTTTCCCSCEE-EE--TTEEEE
T ss_pred EEcCCChhHHHHHH-------HHHHCCCCCEEEEcC--CCHHHHHH----HHHHhCCCCCCCEE-EE--CCEEEe
Confidence 46899999999773 334456667665555 44554333 33445 88999976 54 567663
No 245
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=94.46 E-value=0.06 Score=47.87 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~-p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..++||++|+.+.+ +.+-++-.|..|.||..+. +.+ ...+...+|...+|..++ +|+.+.
T Consensus 22 y~~~~Cp~C~~ak~-------~L~~~~i~~~~~dvd~~~~~~~~----~~~l~~~~g~~tvP~vfi---~g~~ig 82 (114)
T 3h8q_A 22 FSKSYCPHSTRVKE-------LFSSLGVECNVLELDQVDDGARV----QEVLSEITNQKTVPNIFV---NKVHVG 82 (114)
T ss_dssp EECTTCHHHHHHHH-------HHHHTTCCCEEEETTTSTTHHHH----HHHHHHHHSCCSSCEEEE---TTEEEE
T ss_pred EEcCCCCcHHHHHH-------HHHHcCCCcEEEEecCCCChHHH----HHHHHHHhCCCccCEEEE---CCEEEe
Confidence 35699999998663 2334556677777776432 222 233344568889999866 777663
No 246
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=94.42 E-value=0.057 Score=61.03 Aligned_cols=101 Identities=10% Similarity=0.119 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccC-CCCCCccccccccCCCCCCCChHHHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT-TGEDPSVLLRVKEDHDGAEPSGNSVSVINL 565 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t-~~~~~~li~r~k~~~D~a~PS~nsvaa~~L 565 (714)
-|-..=.+-|||..|..++|+.+|++|++|.+.+.--| |..+|--+.. .-.... ....... ...+.+..+.+..-+
T Consensus 168 FETtIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAF-dTptgiP~~~vnl~~g~-~~~~~~~-~~s~lAe~GSl~LEF 244 (538)
T 1x9d_A 168 FESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAF-RTPSKIPYSDVNIGTGV-AHPPRWT-SDSTVAEVTSIQLEF 244 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSTTSCCCSEEETTTCC-EECCTTC-SEEEHHHHHSSHHHH
T ss_pred hheehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeeecccc-cCCCCcC-CCceeccccceeeeH
Confidence 35556678999999999999999999999999998877 5556532211 100000 0000000 012223333355668
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 566 VRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 566 lrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
.+|+++||+ +.|.+.|+++...+..
T Consensus 245 ~~LS~LTGd---~~Y~~~a~r~~~~l~~ 269 (538)
T 1x9d_A 245 RELSRLTGD---KKFQEAVEKVTQHIHG 269 (538)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHh
Confidence 999999996 7899999999888754
No 247
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=94.35 E-value=1.1 Score=50.44 Aligned_cols=286 Identities=13% Similarity=0.118 Sum_probs=155.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHcc------CChHHHHHHHHHHHHHHHhcc-CCCCceeeeccCCCccccCcccccC
Q 005115 238 WHVPHFEKMLYDQGQLANVYLDAFSLT------KDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADSAETEGATRKKE 310 (714)
Q Consensus 238 W~vPHFEKMLyDNA~ll~~y~~Ay~~t------~d~~y~~~A~~~~~fl~~~m~-~p~Ggfysa~DADs~~~~~~~~~~E 310 (714)
-.|+-||-.+ ++|-.++-||.++ +++.|++.|.+..+-|+--+- .|.|-=|+..+-.+... +.
T Consensus 93 ~~VsvFETtI----R~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~~-----~~- 162 (511)
T 1dl2_A 93 AEVNVFETTI----RMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQA-----VK- 162 (511)
T ss_dssp SEEEHHHHHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCE-----EC-
T ss_pred ceechhheeh----hhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCCC-----CC-
Confidence 3567788654 5888888888899 999999999999999998887 77775555444221000 00
Q ss_pred CceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCc----hHHHHhcCCCHHHHHHHH
Q 005115 311 GAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS----SASASKLGMPLEKYLNIL 386 (714)
Q Consensus 311 G~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~----~~~a~~~g~~~~~~~~~l 386 (714)
--|+ .|..++.-..++ ..+++..| ..+..+..
T Consensus 163 ---~~~~---------------------------------------~~~s~~Ae~gSl~LEF~~LS~LTG--d~~Y~~~a 198 (511)
T 1dl2_A 163 ---NHAD---------------------------------------GGASSTAEFTTLQMEFKYLAYLTG--NRTYWELV 198 (511)
T ss_dssp ---CSSG---------------------------------------GGCEEHHHHSSCHHHHHHHHHHHT--CHHHHHHH
T ss_pred ---CCCC---------------------------------------CcccccccccceeeeHHHHHHHHC--ChHHHHHH
Confidence 0011 001111111110 01111112 12333444
Q ss_pred HHHHHHHHhhhhc--CC----CCCCCcc------hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHH
Q 005115 387 GECRRKLFDVRSK--RP----RPHLDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYME 451 (714)
Q Consensus 387 ~~~r~~L~~~R~~--R~----~P~~DdK------ilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~ 451 (714)
+.+.+.|...|.. +. +-++|.. -..+|.|..=+ =|.+.+..+++ +.|++
T Consensus 199 ~r~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~lGa~~DS~YEYLlK~~il~~d----------------~~y~~ 262 (511)
T 1dl2_A 199 ERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHE----------------TLYYD 262 (511)
T ss_dssp HTTHHHHHHHHTHHHHHTTCCBSEECTTTCCBCSCCBCSSTTTHHHHHHHHHHHHHHCC----------------HHHHH
T ss_pred HHHHHHHHhcccccCCCCCCcceEEcCCCCCccCCeeeecCCCCcHHHHHHHHHHhcCC----------------HHHHH
Confidence 5555566554411 00 0011111 12344444333 46777777766 78999
Q ss_pred HHHHHHHHHHHhccccC--CCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcC------------ChHHHHHHHH
Q 005115 452 VAESAASFIRRHLYDEQ--THRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGS------------GTKWLVWAIE 515 (714)
Q Consensus 452 ~A~~~~~~l~~~l~d~~--~G~l~~~-~~~g~~-~~~~~l~DyA~li~all~LyeaTg------------d~~~L~~A~~ 515 (714)
+=.++++-|++|+.... .+.++-. ...+.. ......+--+.++-|++.|.-..+ ++++++.|.+
T Consensus 263 m~~~a~~~i~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~hL~cF~gG~~aLg~~~~~~~~~a~~~~~~~~~~~~~a~~ 342 (511)
T 1dl2_A 263 LYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKG 342 (511)
T ss_dssp HHHHHHHHHHHHTEEECTTTCCEEECBBTTCTTSCCBCEEEGGGGGHHHHHHHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEeecCCCCccccccchhhhchhHHHHhccccCCChhhhhhcccccHHHHHHHHH
Confidence 99999999999987431 2333322 221111 112223333555778887775322 3479999999
Q ss_pred HHHHHHHhcccccCCc----cccCCCCC----------CccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHH
Q 005115 516 LQNTQDELFLDREGGG----YFNTTGED----------PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYR 581 (714)
Q Consensus 516 L~~~~~~~F~D~~~Gg----ff~t~~~~----------~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~ 581 (714)
|.+.+...+....+|- |....... .+..++. .|...| ---..++.+.-|+++||+ +.|+
T Consensus 343 l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~d~~~~~---~d~~y~-LRPE~iES~fylyR~TgD---~~yr 415 (511)
T 1dl2_A 343 ITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKP---LDRHNL-QRPETVESIMFMYHLSHD---HKYR 415 (511)
T ss_dssp HHHHHHHHHHTSTTSCCCSEEEECCSCCC-CCCEECSSSSEEECG---GGCCBC-CCCHHHHHHHHHHHHHCC---THHH
T ss_pred HHHHHHHHHhcCccCCCceEEEeecCCccccccccccccceeecc---CCcccC-cCHHHHHHHHHHHHHcCC---HHHH
Confidence 9999887665434442 22221110 0110100 010000 001578899999999996 8899
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 005115 582 QNAEHSLAVFETRLKDMAMA 601 (714)
Q Consensus 582 e~A~~~l~~~~~~i~~~p~~ 601 (714)
+.+.++++++.... +.+.+
T Consensus 416 e~gw~~f~ai~k~~-rt~~G 434 (511)
T 1dl2_A 416 EWGAEIATSFFENT-CVDCN 434 (511)
T ss_dssp HHHHHHHHHHHHHH-EESTT
T ss_pred HHHHHHHHHHHHHh-ccccC
Confidence 99999999986654 44444
No 248
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=94.32 E-value=0.069 Score=59.68 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=65.4
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc-CCCCCCccccccccCCC-CCCCChHHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVLLRVKEDHD-GAEPSGNSVSVIN 564 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~-t~~~~~~li~r~k~~~D-~a~PS~nsvaa~~ 564 (714)
-|-..=.+-|||.+|..|+|+.+|++|++|.+.+..-| |..+|--+. ..-..... .......+ .++.+..+.+..-
T Consensus 104 FETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAF-dTptgiP~~~vnl~~g~~-~~~~~~~~~~s~lAe~gsl~LE 181 (478)
T 1nxc_A 104 FEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAF-HTPSGIPWALLNMKSGIG-RNWPWASGGSSILAEFGTLHLE 181 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSSSSCCCSEEETTTCCE-ECCTTSGGGCEEHHHHTTCHHH
T ss_pred hheehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccccC-CCCcccCCCCcccccccchhhh
Confidence 35555578899999999999999999999999998887 555553221 11010000 00000000 1112223334556
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 565 LVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 565 LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
+.+|+++||+ +.|.+.|+++.+.+..
T Consensus 182 F~~LS~lTGd---~~Y~~~a~~~~~~l~~ 207 (478)
T 1nxc_A 182 FMHLSHLSGD---PVFAEKVMKIRTVLNK 207 (478)
T ss_dssp HHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---hHHHHHHHHHHHHHHh
Confidence 8999999996 7899999988877653
No 249
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=94.09 E-value=0.19 Score=46.58 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=14.6
Q ss_pred CcCceEEeCCCCccccc
Q 005115 71 GWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~ 87 (714)
+.|++++++++|+++..
T Consensus 132 ~~P~~~lid~~G~i~~~ 148 (169)
T 2v1m_A 132 WNFSKFLVDRQGQPVKR 148 (169)
T ss_dssp STTCEEEECTTSCEEEE
T ss_pred ccceEEEECCCCCEEEE
Confidence 35899999999999864
No 250
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=94.04 E-value=0.2 Score=47.50 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.3
Q ss_pred CCcCc----eEEeCCCCccccc
Q 005115 70 GGWPL----SVFLSPDLKPLMG 87 (714)
Q Consensus 70 ~g~P~----~vfl~p~g~p~~~ 87 (714)
++.|+ +++++++|+.+..
T Consensus 130 ~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 130 KKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp TCCCSSTTCEEEECTTSCEEEE
T ss_pred CCCccccceEEEECCCCCEEEE
Confidence 46898 9999999999854
No 251
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=94.02 E-value=0.35 Score=54.34 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC---CCc
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP---GFL 487 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~--~~~~g~~~~~---~~l 487 (714)
-|-+++-+|.-|+.++++....... . ....+.+|+.|+++++.|.-.|..+ +|-=+. ..+.|.+... ..+
T Consensus 101 TtIR~LGGLLSAy~Ls~~~~~~~~~---~-~~~~~~lL~kA~dLadrLlpAFdTp-tgiP~~~vnl~~~~~~~~~~~~~~ 175 (503)
T 1hcu_A 101 TNIRYLGGLLSAYDLLRGPFSSLAT---N-QTLVNSLLRQAQTLANGLKVAFTTP-SGVPDPTVFFNPTVRRSGASSNNV 175 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGCC---C-HHHHHHHHHHHHHHHHHHGGGGCSS-SSCCCSEEECSSSCEECCCSEEEH
T ss_pred eehhhHhHHHHHHHHccCccccccc---c-ccchHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCCCCcccc
Confidence 3678899999999999872000000 0 0001479999999999999888654 452111 1233322111 123
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc--cccCCc---cccCCCCCCccccccccCCCCCCCChHHHHH
Q 005115 488 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 562 (714)
Q Consensus 488 ~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~--D~~~Gg---ff~t~~~~~~li~r~k~~~D~a~PS~nsvaa 562 (714)
-..+-++.=+..|.++|||++|.+.|.++.+.+.+.-. .+..|- +.+..... .. ..+...=++.-..-
T Consensus 176 Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~--~~-----~~~~~~Ga~~DS~Y 248 (503)
T 1hcu_A 176 AEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGT--FQ-----DSSGSWSGLMDSFY 248 (503)
T ss_dssp HHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCC--BC-----CCEECSSTTTHHHH
T ss_pred ccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCc--cc-----CCeeeecCCCccHH
Confidence 34455667788999999999999999999998875321 011221 22211110 00 00111112223477
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 005115 563 INLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 599 (714)
Q Consensus 563 ~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i~~~p 599 (714)
+-|++.+.++|+. ++.|++.-.+.+..+...+...|
T Consensus 249 EYLlK~~il~g~~-~~~y~~m~~~a~~~i~~~l~~~~ 284 (503)
T 1hcu_A 249 EYLIKMYLYDPVA-FAHYKDRWVLGADSTIGHLGSHP 284 (503)
T ss_dssp HHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEECB
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999864 35788887777777777666555
No 252
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=93.96 E-value=0.064 Score=53.07 Aligned_cols=18 Identities=6% Similarity=-0.306 Sum_probs=16.1
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|.+++++++|+..+..
T Consensus 141 ~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 141 SLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp ECEEEEEECTTSBEEEEE
T ss_pred cccEEEEECCCCEEEEEE
Confidence 799999999999998764
No 253
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=93.90 E-value=0.13 Score=49.56 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=24.0
Q ss_pred cCCCCcCceEEeCCCCcccccccccCCCCCCCC-ccHHHHHHHHHH
Q 005115 67 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGR-PGFKTILRKVKD 111 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~~-~~f~~~L~~i~~ 111 (714)
.|..|+|+.+| +|+.+.++.- +. +. ..|.++|+.+..
T Consensus 147 ~gv~gtPt~vi---ng~~~~~g~~-~~----~~~e~~~~~i~~L~~ 184 (195)
T 3hd5_A 147 AHIDGTPAFAV---GGRYMTSPVL-AG----NDYAGALKVVDQLIV 184 (195)
T ss_dssp TTCCSSSEEEE---TTTEEECTTT-TT----GGGTTHHHHHHHHHH
T ss_pred hCCCcCceEEE---CCEEEeCccc-cC----ChHHHHHHHHHHHHH
Confidence 37899999998 7888766532 21 11 257777776544
No 254
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=93.87 E-value=0.12 Score=48.30 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=23.3
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|++++++++|+.++.....++. ..+.+.++++.|.+
T Consensus 128 ~p~~~lid~~G~i~~~~~g~~~~---~~~~~~~l~~~l~~ 164 (167)
T 2jsy_A 128 ARSVFVLDENGKVVYAEYVSEAT---NHPNYEKPIEAAKA 164 (167)
T ss_dssp CCEEEEECTTSCEEEEEECSBTT---SCCCSHHHHHHHHH
T ss_pred eeEEEEEcCCCcEEEEEecCCcC---CCCCHHHHHHHHHH
Confidence 49999999999998653211111 23456666666654
No 255
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=93.83 E-value=0.13 Score=48.80 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=22.5
Q ss_pred CceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 73 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 73 P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
|.+++++++|+.++...--+. ...+.+.++|+.+.
T Consensus 130 p~~~lid~~G~I~~~~~g~~~---~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 130 RAIVVIGADGNVAYTELVPEI---AQEPNYEAALAALG 164 (175)
T ss_dssp SEEEEECTTSBEEEEEECSBT---TCCCCHHHHHHHHH
T ss_pred ceEEEECCCCeEEEEEECCCc---CCCCCHHHHHHHHH
Confidence 999999999999855310011 11346777777664
No 256
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=93.64 E-value=0.75 Score=49.79 Aligned_cols=130 Identities=7% Similarity=-0.124 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhh-hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE-E-Eec----------CCCC
Q 005115 415 GLVISSFARASKILK-SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ-H-SFR----------NGPS 481 (714)
Q Consensus 415 al~I~aLa~a~~~~~-d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~-~-~~~----------~g~~ 481 (714)
|.+ ..|+.+++... + +.+++.++++.+++.+...++++|.++ . ..+ ....
T Consensus 210 Gi~-~~L~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~ 272 (409)
T 2g0d_A 210 GVG-CILAYAHIKGYSN----------------EASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASF 272 (409)
T ss_dssp HHH-HHHHHHHHHTCCC----------------HHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSC
T ss_pred HHH-HHHHHHHHhCCCC----------------hhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCC
Confidence 444 77888776532 4 789999999999998776644445422 1 111 1122
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHH
Q 005115 482 KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 561 (714)
Q Consensus 482 ~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsva 561 (714)
...++...-+=.+.+++.+|++++|++|++.|++..+.+.++ ++... +...=-|.+=.
T Consensus 273 ~~~~WChG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~~~~~------~~~~~----------------~~~LCHG~aG~ 330 (409)
T 2g0d_A 273 IRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQR------KLGID----------------SYMICHGYSGL 330 (409)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------CTTCC----------------SCCTTTSHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------ccCCC----------------CCCCCChHHHH
Confidence 345677777888999999999999999999999999888765 11100 01112255556
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHH
Q 005115 562 VINLVRLASIVAGSKSDYYRQNAEH 586 (714)
Q Consensus 562 a~~LlrL~~lt~~~~~~~y~e~A~~ 586 (714)
+..|++++..+++ ++|.++|.+
T Consensus 331 ~~~l~~l~~~~~~---~~~~~~a~~ 352 (409)
T 2g0d_A 331 IEICSLFKRLLNT---KKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHHCC---CTTHHHHHH
T ss_pred HHHHHHHHHHhCC---HHHHHHHHH
Confidence 6778899999986 568888776
No 257
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=93.63 E-value=0.12 Score=52.91 Aligned_cols=37 Identities=19% Similarity=-0.095 Sum_probs=24.9
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
++|.+++++|+|+..+...|-.+. | ..+-++|+.|..
T Consensus 123 ~~p~~fIID~dG~I~~~~~~~~~~---g-r~~~Ellr~I~a 159 (249)
T 3a2v_A 123 TVRGVFIVDARGVIRTMLYYPMEL---G-RLVDEILRIVKA 159 (249)
T ss_dssp CCEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHHH
T ss_pred ccceEEEECCCCeEEEEEecCCcc---c-chhHHHHHHHHH
Confidence 899999999999998765432221 1 246676666543
No 258
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=93.54 E-value=0.069 Score=60.13 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHhccc-ccCCccccC-CCCCCccccccccCCCCCCCChH
Q 005115 487 LDDYAFLISGLLDLYEFG------SGTKWLVWAIELQNTQDELFLD-REGGGYFNT-TGEDPSVLLRVKEDHDGAEPSGN 558 (714)
Q Consensus 487 l~DyA~li~all~LyeaT------gd~~~L~~A~~L~~~~~~~F~D-~~~Ggff~t-~~~~~~li~r~k~~~D~a~PS~n 558 (714)
-|-..=.+-|||..|..+ +|+.+|++|++|.+.+.--| | ..+|--|.. .-..... ..........+.+..
T Consensus 98 FETtIR~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAF-d~TptgiP~~~vnl~~g~~-~~~~~~~~~s~~Ae~ 175 (511)
T 1dl2_A 98 FETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAF-LSTQTGIPYSSINLHSGQA-VKNHADGGASSTAEF 175 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGG-GSSSSSCCCSEEETTTCCE-ECCSSGGGCEEHHHH
T ss_pred hheehhhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhh-cCCCCCCCCceeecccCCC-CCCCCCCcccccccc
Confidence 344555788999999999 99999999999999999888 5 556532211 1000000 000000001111222
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 559 SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 559 svaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
+.+..-+.+|+++||+ +.|.+.|+++++.+...
T Consensus 176 gSl~LEF~~LS~LTGd---~~Y~~~a~r~~~~l~~~ 208 (511)
T 1dl2_A 176 TTLQMEFKYLAYLTGN---RTYWELVERVYEPLYKN 208 (511)
T ss_dssp SSCHHHHHHHHHHHTC---HHHHHHHHTTHHHHHHH
T ss_pred cceeeeHHHHHHHHCC---hHHHHHHHHHHHHHHhc
Confidence 2345568999999996 89999999999888764
No 259
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=93.44 E-value=0.12 Score=43.53 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=35.3
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
-.+++||++|+++.. +.+.++-.|..|.|| +.|.....+ ...+|..++|+ +|. +|+.+.
T Consensus 10 ly~~~~C~~C~~~~~-------~L~~~~i~~~~~di~--~~~~~~~~l----~~~~~~~~vP~-l~~--~g~~i~ 68 (92)
T 2khp_A 10 IYTRPGCPYCARAKA-------LLARKGAEFNEIDAS--ATPELRAEM----QERSGRNTFPQ-IFI--GSVHVG 68 (92)
T ss_dssp EEECTTCHHHHHHHH-------HHHHTTCCCEEEEST--TSHHHHHHH----HHHHTSSCCCE-EEE--TTEEEE
T ss_pred EEECCCChhHHHHHH-------HHHHcCCCcEEEECC--CCHHHHHHH----HHHhCCCCcCE-EEE--CCEEEc
Confidence 346899999998763 223344567666555 334433322 23458899995 454 566653
No 260
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=93.35 E-value=0.53 Score=50.97 Aligned_cols=145 Identities=15% Similarity=0.036 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCC-eEEEEecC-----------CCCCCCCCcchHHHHHHHHHHHHHHc-CChHHHHHH
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTH-RLQHSFRN-----------GPSKAPGFLDDYAFLISGLLDLYEFG-SGTKWLVWA 513 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G-~l~~~~~~-----------g~~~~~~~l~DyA~li~all~LyeaT-gd~~~L~~A 513 (714)
+.+.+.+.++.++|.+...+.... .++..... ......++....|=.+..|..+|..+ .++.+++.+
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~~ 232 (409)
T 2g0d_A 153 EQYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSAL 232 (409)
T ss_dssp GGGHHHHHHHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceeecCCccccchhhhcCCCCCccCCchhhHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 456778888888888754321111 01110000 00013467777777776666666554 289999999
Q ss_pred HHHHHHHHHhcccccCCccccC---CCCCCc-cccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005115 514 IELQNTQDELFLDREGGGYFNT---TGEDPS-VLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 589 (714)
Q Consensus 514 ~~L~~~~~~~F~D~~~Ggff~t---~~~~~~-li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~ 589 (714)
.+..+.+.+...+.++|.+|-. ..+... -........-..---|.+=.+..+++++..+++ ++|.+.|++.+.
T Consensus 233 ~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~d---~~~~~~a~~~~~ 309 (409)
T 2g0d_A 233 QKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDN---DYFVDKAEKILE 309 (409)
T ss_dssp HHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 9999999777666556664321 000000 000000000111223555577788888999885 789999998888
Q ss_pred HHHHH
Q 005115 590 VFETR 594 (714)
Q Consensus 590 ~~~~~ 594 (714)
.....
T Consensus 310 ~~~~~ 314 (409)
T 2g0d_A 310 SAMQR 314 (409)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 261
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=93.34 E-value=0.22 Score=49.00 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=14.4
Q ss_pred CcCceEEeCCCCccccc
Q 005115 71 GWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~ 87 (714)
+.|++++++++|+++..
T Consensus 172 ~~p~tflID~~G~i~~~ 188 (208)
T 2f8a_A 172 WNFEKFLVGPDGVPLRR 188 (208)
T ss_dssp STTCEEEECTTSCEEEE
T ss_pred cCceEEEEcCCCcEEEE
Confidence 34999999999999854
No 262
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=93.32 E-value=8.6 Score=45.11 Aligned_cols=83 Identities=14% Similarity=0.060 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhCCCccc----------C-CCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHH
Q 005115 204 EGQKMVLFTLQCMAKGGIHDH----------V-GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFY 269 (714)
Q Consensus 204 ~~~~~~~~TL~~m~~GGi~D~----------v-~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t---~d~~y 269 (714)
+..+++.+.++-|...=+.|. . .|||. |+... |.---.-+.|..+.++..+.... +++.+
T Consensus 406 ~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~-f~~~~-----~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~ 479 (732)
T 1w6k_A 406 EFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFS-FSTLD-----CGWIVSDCTAEALKAVLLLQEKCPHVTEHIP 479 (732)
T ss_dssp GGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCB-SSCTT-----TCCBCHHHHHHHHHHHHHHHHHCTTCCSCCC
T ss_pred hhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeec-CCCCC-----CCCCccccHHHHHHHHHHHhcccccccchhh
Confidence 445566666666654323332 1 17774 56443 22234567899999999887764 45677
Q ss_pred HHHHHHHHHHHHHhccCCCCceee
Q 005115 270 SYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 270 ~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
.+.++++++||++ +++++|||.+
T Consensus 480 ~~~i~~av~wLls-~Q~~DGgw~a 502 (732)
T 1w6k_A 480 RERLCDAVAVLLN-MRNPDGGFAT 502 (732)
T ss_dssp HHHHHHHHHHHHT-TCCTTSCBCS
T ss_pred HHHHHHHHHHHHH-hcCCCCCEEe
Confidence 8899999999997 8999999953
No 263
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=93.30 E-value=0.086 Score=52.41 Aligned_cols=18 Identities=6% Similarity=-0.121 Sum_probs=15.9
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|++++++++|++++..
T Consensus 159 ~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 159 AFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp BCEEEEEECTTSEEEEEE
T ss_pred ccceEEEECCCCeEEEEE
Confidence 789999999999998663
No 264
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=93.30 E-value=0.084 Score=49.00 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=14.5
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|++++++++|+.++.
T Consensus 125 ~p~~~lid~~G~i~~~ 140 (163)
T 3gkn_A 125 ERSTFLLSPEGQVVQA 140 (163)
T ss_dssp CCEEEEECTTSCEEEE
T ss_pred ceEEEEECCCCeEEEE
Confidence 8999999999999854
No 265
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=93.24 E-value=0.087 Score=48.18 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCCCCChhhHhh-hhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M-~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|+.+ . ..++.... -+-.|..|.||.++ +- ......+...+|..++|.. |+ +|+.+
T Consensus 42 y~~~~Cp~C~~a~k-~~L~~~~~---~~i~~~~vdvd~~~--~~-~~~~~~L~~~~g~~tVP~v-fi--~g~~i 105 (129)
T 3ctg_A 42 AAKTYCPYCKATLS-TLFQELNV---PKSKALVLELDEMS--NG-SEIQDALEEISGQKTVPNV-YI--NGKHI 105 (129)
T ss_dssp EECTTCHHHHHHHH-HHHTTSCC---CGGGEEEEEGGGST--TH-HHHHHHHHHHHSCCSSCEE-EE--TTEEE
T ss_pred EECCCCCchHHHHH-HHHHhcCc---cCCCcEEEEccccC--CH-HHHHHHHHHHhCCCCCCEE-EE--CCEEE
Confidence 467999999986 3 32322110 01456666676654 21 1122333445588899985 54 56666
No 266
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=93.21 E-value=2.4 Score=48.73 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=67.9
Q ss_pred cCCCCCC---CCCCCChhHH---HHHHHhhhh---hcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCC-
Q 005115 167 RFGGFGS---APKFPRPVEI---QMMLYHSKK---LEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE- 236 (714)
Q Consensus 167 ~~GGfg~---apKFP~~~~l---~~Ll~~~~~---~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~- 236 (714)
..|||-. --||-.|+.. .+++-+... .... ..-+.+++.+..-++-|.+ . +...|+|| +.|-.
T Consensus 49 lsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~e~~~~~~~~---g~~~d~ldeikwg~Dyllk--~-~~~~~~~y-~qVGdg 121 (614)
T 1g87_A 49 LTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKS---GQTKYIMDGIKWANDYFIK--C-NPTPGVYY-YQVGDG 121 (614)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHH--T-CCSTTCEE-EEESCH
T ss_pred CCCCeeeCCCCcEeccccHHHHHHHHHHHHHhHHHHhhC---CChHHHHHHHHHHHHHHHH--h-ccCCCcEE-EEecCC
Confidence 5799955 4687766633 222222221 1111 1246889999999999888 3 33455666 35432
Q ss_pred -----CCCCCCCchhH--------------HH-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHh
Q 005115 237 -----RWHVPHFEKML--------------YD-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRD 283 (714)
Q Consensus 237 -----~W~vPHFEKML--------------yD-NA~ll~~y~~Ay~~t~d------~~y~~~A~~~~~fl~~~ 283 (714)
-|..| |.|- -| -+..+.+++.|+++.++ ..+++.|++.++|..++
T Consensus 122 ~~DH~~w~~p--e~~~~~r~~y~v~~~~pgsd~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~ 192 (614)
T 1g87_A 122 GKDHSWWGPA--EVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADKA 192 (614)
T ss_dssp HHHHTCCSCG--GGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccccCCc--ccCCCCCcceEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 46554 3331 13 57889999999999875 44667889999999875
No 267
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=93.20 E-value=0.054 Score=50.46 Aligned_cols=17 Identities=0% Similarity=-0.062 Sum_probs=14.7
Q ss_pred CCcCceEEeCCCCccccc
Q 005115 70 GGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 70 ~g~P~~vfl~p~g~p~~~ 87 (714)
.++|++++++ +|+.+..
T Consensus 136 ~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 136 DHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp EECCCEEEEE-TTEEEEE
T ss_pred ecCCEEEEEE-CCEEEEE
Confidence 5789999999 9998854
No 268
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=93.14 E-value=4.8 Score=44.82 Aligned_cols=280 Identities=15% Similarity=0.106 Sum_probs=155.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHcc-CC-----------hHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccC
Q 005115 237 RWHVPHFEKMLYDQGQLANVYLDAFSLT-KD-----------VFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEG 304 (714)
Q Consensus 237 ~W~vPHFEKMLyDNA~ll~~y~~Ay~~t-~d-----------~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~ 304 (714)
+-.|+-||-- -++|-.++-||.++ ++ +.+++.|.+..+-|+--+-.|.|-=|+..+-.+..
T Consensus 80 ~~~vsvFETt----IR~LGGLLSAy~Ls~g~~~~~~~~~~~~~~lL~kA~dLadrLlpAF~TptgiP~~~vnl~~~~--- 152 (475)
T 2ri9_A 80 SDTVSLFETT----IRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHG--- 152 (475)
T ss_dssp SSCEEHHHHH----HHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCC---
T ss_pred CCccchhhee----hHhHhHHhHHHHhccCccccccccccchHHHHHHHHHHHHHHHHhhcCCCCCCCceeecccCC---
Confidence 3456668754 45888888888898 76 79999999999999988877777545444322100
Q ss_pred cccccCCceEeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHH
Q 005115 305 ATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLN 384 (714)
Q Consensus 305 ~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~ 384 (714)
....+ -+ ..+|+-.+.= + |. .++...| ..+..+
T Consensus 153 --~~~~~--~~-~~Ae~gsl~L-E---F~------------------------------------~LS~lTG--d~~Y~~ 185 (475)
T 2ri9_A 153 --NDGAT--TN-GLAVTGTLVL-E---WT------------------------------------RLSDLTG--DEEYAK 185 (475)
T ss_dssp --BCCCS--EE-EHHHHHSCHH-H---HH------------------------------------HHHHHHS--CTHHHH
T ss_pred --CcCCC--cc-chhcccccee-e---HH------------------------------------HHHHHhC--CHHHHH
Confidence 00000 00 0111100000 0 00 1111112 113444
Q ss_pred HHHHHHHHHHhhh--hcCCCCC-----CCcc------hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 005115 385 ILGECRRKLFDVR--SKRPRPH-----LDDK------VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKE 448 (714)
Q Consensus 385 ~l~~~r~~L~~~R--~~R~~P~-----~DdK------ilt~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~ 448 (714)
..+.+.+.|...| .....|. +|-. -..+|.|..-+ =|.+.+..+++. .+.
T Consensus 186 ~a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~--------------~~~ 251 (475)
T 2ri9_A 186 LSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKR--------------FET 251 (475)
T ss_dssp HHHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHHHHHHCTTT--------------THH
T ss_pred HHHHHHHHHHhhccccccCCCCCcceEEeCCCCcccCCceeecCCcchHHHHHHHHHHHcCCc--------------hHH
Confidence 5566677776654 2111121 1111 12344444333 477888888762 167
Q ss_pred HHHHHHHHHHHHHHhccccC---CCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHh
Q 005115 449 YMEVAESAASFIRRHLYDEQ---THR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYE-FGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 449 yl~~A~~~~~~l~~~l~d~~---~G~-l~~~~~~g~~~~~~~l~DyA~li~all~Lye-aTgd~~~L~~A~~L~~~~~~~ 523 (714)
|+++=.++++-+.+|+.... .+. +...+.++.. . ...+--+.++-|++.|.- ....+++++.|.+|.+.+...
T Consensus 252 ~~~m~~~a~~~i~~~l~~~~~~~~~~~~v~~~~~~~~-~-~~~~hL~cF~~G~~aLgg~~~~~~~~~~~a~~l~~tC~~~ 329 (475)
T 2ri9_A 252 YKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNY-D-LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEAT 329 (475)
T ss_dssp HHHHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEE-E-CEEETGGGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCceEEEeccCCcc-c-cccchHHHhHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 99998999999999986421 122 2222333221 1 112222344566665554 445789999999999998776
Q ss_pred cccccCCc----cccCCCCCCc-----------------cccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHH
Q 005115 524 FLDREGGG----YFNTTGEDPS-----------------VLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQ 582 (714)
Q Consensus 524 F~D~~~Gg----ff~t~~~~~~-----------------li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e 582 (714)
+....+|- |......... -++|+ ..++.+.-|+++||+ +.|++
T Consensus 330 y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRP-------------E~iES~fylyR~TgD---~~yr~ 393 (475)
T 2ri9_A 330 YNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRP-------------EVIESFYYAHRVTGK---EIYRD 393 (475)
T ss_dssp HHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCC-------------HHHHHHHHHHHHHCC---HHHHH
T ss_pred HHhcccCCCCcEEEeecCcccccccccccCCCceecccccCCCh-------------HHHHHHHHHHHHhCC---HHHHH
Confidence 64433442 2222111100 11111 578899999999996 89999
Q ss_pred HHHHHHHHHHHHHHhhhhhHH
Q 005115 583 NAEHSLAVFETRLKDMAMAVP 603 (714)
Q Consensus 583 ~A~~~l~~~~~~i~~~p~~~~ 603 (714)
.+.++++++.... +.+.+++
T Consensus 394 ~gw~~f~ai~k~~-rt~~G~a 413 (475)
T 2ri9_A 394 WVWNAFVAINSTC-RTDSGFA 413 (475)
T ss_dssp HHHHHHHHHHHHT-BCSSSBC
T ss_pred HHHHHHHHHHHHH-ccccCCc
Confidence 9999999976543 4455543
No 269
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=93.00 E-value=0.067 Score=51.06 Aligned_cols=35 Identities=6% Similarity=-0.100 Sum_probs=20.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHh-cccEEEEEcCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 50 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln-~~Fv~vkvD~e 50 (714)
.+++||..|..+... | .++.+.+. +++..|.|+.+
T Consensus 56 F~atwC~~C~~~~p~-l--~~l~~~~~~~~v~vv~vs~d 91 (181)
T 2p31_A 56 NVASECGFTDQHYRA-L--QQLQRDLGPHHFNVLAFPCN 91 (181)
T ss_dssp EECSSSTTHHHHHHH-H--HHHHHHHGGGTEEEEEEECC
T ss_pred EeccCCCCcHHHHHH-H--HHHHHHhhcCCEEEEEEECc
Confidence 578999999976543 1 22333333 34666666554
No 270
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=92.98 E-value=0.058 Score=50.97 Aligned_cols=15 Identities=13% Similarity=-0.148 Sum_probs=12.4
Q ss_pred CCCCCChhhHhhhhh
Q 005115 13 RRTHFLIKCHVMEVE 27 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e 27 (714)
....||++|+.++..
T Consensus 29 f~d~~Cp~C~~~~~~ 43 (175)
T 3gyk_A 29 FFDYNCPYCRRAMAE 43 (175)
T ss_dssp EECTTCHHHHHHHHH
T ss_pred EECCCCccHHHHHHH
Confidence 457899999999854
No 271
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=92.91 E-value=0.093 Score=53.06 Aligned_cols=55 Identities=13% Similarity=-0.092 Sum_probs=40.9
Q ss_pred CCCCC--ChhhHhhhhhhCCCHHHHHHHhc---c--cEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEe
Q 005115 13 RRTHF--LIKCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 78 (714)
Q Consensus 13 ~~t~w--C~wC~~M~~e~f~~~~va~~ln~---~--Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl 78 (714)
.+++| |.+|+.|..- + +++++..++ + ...+++|.++.+++.+.| |..++|+.+|.
T Consensus 32 ~~~~~~~c~~c~~~~~~-l--~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~--------gv~~~Pt~~i~ 93 (243)
T 2hls_A 32 VFLSKSGCETCEDTLRL-M--KLFEEESPTRNGGKLLKLNVYYRESDSDKFSEF--------KVERVPTVAFL 93 (243)
T ss_dssp EEECSSSCTTHHHHHHH-H--HHHHHHSCEETTEESEEEEEEETTTTHHHHHHT--------TCCSSSEEEET
T ss_pred EEeCCCCCCchHHHHHH-H--HHHHHhccCCCCCceeEEEEecCCcCHHHHHhc--------CCCcCCEEEEE
Confidence 46889 9999999632 1 235554321 1 445689999999999988 88899999998
No 272
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=92.83 E-value=0.11 Score=49.51 Aligned_cols=16 Identities=0% Similarity=-0.230 Sum_probs=14.2
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|++++++++|+++..
T Consensus 150 ~P~~~lid~~G~i~~~ 165 (183)
T 2obi_A 150 NFTKFLIDKNGCVVKR 165 (183)
T ss_dssp TTCEEEECTTSCEEEE
T ss_pred cceEEEECCCCCEEEE
Confidence 5999999999999864
No 273
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.11 Score=47.57 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=37.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc------ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~------~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..++||+||+.+. ++|++ .|..|.||.++.+.- .+.+++.++|...+|..+| +|+.|
T Consensus 19 ysk~~Cp~C~~ak----------~lL~~~~~~~v~~~~idid~~~d~~~---~~~~l~~~~G~~tVP~IfI---~G~~I 81 (127)
T 3l4n_A 19 FSKSTCSYSKGMK----------ELLENEYQFIPNYYIIELDKHGHGEE---LQEYIKLVTGRGTVPNLLV---NGVSR 81 (127)
T ss_dssp EECTTCHHHHHHH----------HHHHHHEEEESCCEEEEGGGSTTHHH---HHHHHHHHHSCCSSCEEEE---TTEEC
T ss_pred EEcCCCccHHHHH----------HHHHHhcccCCCcEEEEecCCCCHHH---HHHHHHHHcCCCCcceEEE---CCEEE
Confidence 3569999999865 34443 577778887644321 2334455678889998755 56666
No 274
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=92.72 E-value=0.12 Score=52.67 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred CCC--CCChhhHhhhhhhCCCHHHHHHHh--cccEEEEEcCC-----CCccHHHHHHHHHHHhcCCC--CcCceEEeCCC
Q 005115 13 RRT--HFLIKCHVMEVESFEDEGVAKLLN--DWFVSIKVDRE-----ERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD 81 (714)
Q Consensus 13 ~~t--~wC~wC~~M~~e~f~~~~va~~ln--~~Fv~vkvD~e-----e~p~i~~~y~~~~q~~~g~~--g~P~~vfl~p~ 81 (714)
+|| +||. |. ..| .++++.+. .+++.++||.+ +.|++.+.| |+. |+|+.+|+. +
T Consensus 29 FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~--------~V~~~~~PTl~~f~-~ 92 (240)
T 2qc7_A 29 FDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY--------KLDKESYPVFYLFR-D 92 (240)
T ss_dssp ECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT--------TCCGGGCSEEEEEE-T
T ss_pred EeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc--------CCCCCCCCEEEEEe-C
Confidence 688 9998 44 233 35677664 47889999954 478888888 888 999999884 5
Q ss_pred Cc
Q 005115 82 LK 83 (714)
Q Consensus 82 g~ 83 (714)
|+
T Consensus 93 G~ 94 (240)
T 2qc7_A 93 GD 94 (240)
T ss_dssp TC
T ss_pred CC
Confidence 66
No 275
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=92.71 E-value=0.059 Score=51.03 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=25.7
Q ss_pred cCceEEeCCCCccccccc-ccCCCCCCCCccHHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGT-YFPPEDKYGRPGFKTILRKVKDA 112 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~t-y~p~~~~~~~~~f~~~L~~i~~~ 112 (714)
.|++++++++|+..+... ..| .++|++-++|+.+.++
T Consensus 121 ~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 121 KRAVFIVKPDGTVAYKWVTDNP----LNEPDYDEVVREANKI 158 (164)
T ss_dssp CCEEEEECTTSBEEEEEECSCT----TCCCCHHHHHHHHHHH
T ss_pred eeEEEEECCCCEEEEEEEeCCC----CCCCCHHHHHHHHHHH
Confidence 688999999999886531 122 3457788888777544
No 276
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=92.69 E-value=0.14 Score=49.22 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCCCcCceEEeCCCCccccc-ccccCCCCCCCCccHHHHHHHHHHH
Q 005115 68 GGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDA 112 (714)
Q Consensus 68 g~~g~P~~vfl~p~g~p~~~-~ty~p~~~~~~~~~f~~~L~~i~~~ 112 (714)
|+.|+|+.+| +|+.+.. .++.|.+ .|.++|+.+...
T Consensus 149 gv~gtPt~~v---ng~~~~~~~G~~~~e------~l~~~i~~l~~k 185 (192)
T 3h93_A 149 QVTGVPTMVV---NGKYRFDIGSAGGPE------ETLKLADYLIEK 185 (192)
T ss_dssp TCCSSSEEEE---TTTEEEEHHHHTSHH------HHHHHHHHHHHH
T ss_pred CCCCCCeEEE---CCEEEecccccCCHH------HHHHHHHHHHHH
Confidence 8899998877 7887753 1344543 566666665444
No 277
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=92.50 E-value=0.099 Score=50.19 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.4
Q ss_pred CCCcC---ceEEeCCCCccccc
Q 005115 69 GGGWP---LSVFLSPDLKPLMG 87 (714)
Q Consensus 69 ~~g~P---~~vfl~p~g~p~~~ 87 (714)
..++| ++++++++|+++..
T Consensus 143 ~~~iP~~~~~~liD~~G~i~~~ 164 (187)
T 3dwv_A 143 TKAIKWNFTSFLIDRDGVPVER 164 (187)
T ss_dssp SSSCCSTTCEEEECTTSCEEEE
T ss_pred CCccccceeEEEECCCCCEEEE
Confidence 34567 99999999999854
No 278
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=92.20 E-value=0.21 Score=43.88 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=32.7
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+||++|+.+.+ +.+-++-.|..|.| ++.|++...+ ..++|..++|. ||+ +|+.+
T Consensus 27 ~~~Cp~C~~ak~-------~L~~~~i~~~~vdi--~~~~~~~~~l----~~~~g~~~vP~-ifi--~g~~i 81 (109)
T 1wik_A 27 EAKCGFSKQILE-------ILNSTGVEYETFDI--LEDEEVRQGL----KTFSNWPTYPQ-LYV--RGDLV 81 (109)
T ss_dssp CCCSSTHHHHHH-------HHHHTCSCEEEEES--SSCHHHHHHH----HHHHSCCSSCE-EEC--SSSEE
T ss_pred CCCCchHHHHHH-------HHHHcCCCeEEEEC--CCCHHHHHHH----HHHhCCCCCCE-EEE--CCEEE
Confidence 489999998653 22334445555544 4545443333 34568889997 454 56665
No 279
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=92.16 E-value=0.079 Score=49.57 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=23.2
Q ss_pred cCceEEeCCCCccccccc-ccCCCCCCCCccHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGT-YFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~t-y~p~~~~~~~~~f~~~L~~i~ 110 (714)
.|++++++++|+..+... ..| .+.+.+-++|+.|+
T Consensus 119 ~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 119 KRAVFVIDKEGKVRYKWVSDDP----TKEPPYDEIEKVVK 154 (157)
T ss_dssp CEEEEEECTTSBEEEEEEESST----TCCCCHHHHHHHHH
T ss_pred eeeEEEECCCCEEEEEEECCCC----CCCCCHHHHHHHHH
Confidence 578899999999876532 122 23566777776654
No 280
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=91.93 E-value=0.33 Score=46.31 Aligned_cols=16 Identities=0% Similarity=-0.230 Sum_probs=14.1
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|++++++++|++++.
T Consensus 152 ~P~~~lid~~G~i~~~ 167 (185)
T 2gs3_A 152 NFTKFLIDKNGCVVKR 167 (185)
T ss_dssp SCCEEEECTTSCEEEE
T ss_pred cceEEEECCCCCEEEe
Confidence 5999999999999854
No 281
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.21 Score=45.10 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=33.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEE----EEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVS----IKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~----vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
...+||+||+... ++|++.=|+ ..+|.++.|++.+ .+..++|...+|..++ +|+.|
T Consensus 26 ~~~p~Cp~C~~ak----------~lL~~~gv~~~~~~~~dv~~~~~~~~----~l~~~sg~~tvP~vfI---~g~~i 85 (121)
T 3gx8_A 26 PEFPKCGFSRATI----------GLLGNQGVDPAKFAAYNVLEDPELRE----GIKEFSEWPTIPQLYV---NKEFI 85 (121)
T ss_dssp SSSBCTTHHHHHH----------HHHHHHTBCGGGEEEEECTTCHHHHH----HHHHHHTCCSSCEEEE---TTEEE
T ss_pred CCCCCCccHHHHH----------HHHHHcCCCcceEEEEEecCCHHHHH----HHHHHhCCCCCCeEEE---CCEEE
Confidence 4457999999954 444443232 3355555555433 3445668888898644 56666
No 282
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=90.99 E-value=0.22 Score=44.95 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc----ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~----~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
...+||+||+... ++|++ .|..|.|| +.|++. ..+..++|...+|..++ +|+.|
T Consensus 30 ~~~p~Cp~C~~ak----------~lL~~~gv~~~~~vdV~--~d~~~~----~~l~~~tg~~tvP~vfI---~g~~I 87 (118)
T 2wem_A 30 PEQPQCGFSNAVV----------QILRLHGVRDYAAYNVL--DDPELR----QGIKDYSNWPTIPQVYL---NGEFV 87 (118)
T ss_dssp SSSBSSHHHHHHH----------HHHHHTTCCCCEEEESS--SCHHHH----HHHHHHHTCCSSCEEEE---TTEEE
T ss_pred CCCCccHHHHHHH----------HHHHHcCCCCCEEEEcC--CCHHHH----HHHHHHhCCCCcCeEEE---CCEEE
Confidence 4457999999854 44444 35555554 444443 33455678888998644 56666
No 283
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=90.98 E-value=0.46 Score=44.17 Aligned_cols=19 Identities=21% Similarity=-0.020 Sum_probs=16.0
Q ss_pred CCCcCceEEeCCCCccccc
Q 005115 69 GGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 69 ~~g~P~~vfl~p~g~p~~~ 87 (714)
..+.|++++++++|+.++.
T Consensus 133 ~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 133 VIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp CCSCCEEEEECTTSEEEEE
T ss_pred eeeeeEEEEECCCCeEEEE
Confidence 4568999999999999854
No 284
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=90.96 E-value=0.16 Score=44.78 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=33.7
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..+||++|++..+ +-+-++-.|..|.|+ +.|++.+ .+..++|...+|.. |+ +|+.|
T Consensus 29 ~~p~Cp~C~~ak~-------~L~~~gi~~~~~dI~--~~~~~~~----~l~~~~g~~tvP~i-fi--~g~~i 84 (109)
T 3ipz_A 29 DFPMCGFSNTVVQ-------ILKNLNVPFEDVNIL--ENEMLRQ----GLKEYSNWPTFPQL-YI--GGEFF 84 (109)
T ss_dssp SSBSSHHHHHHHH-------HHHHTTCCCEEEEGG--GCHHHHH----HHHHHHTCSSSCEE-EE--TTEEE
T ss_pred CCCCChhHHHHHH-------HHHHcCCCcEEEECC--CCHHHHH----HHHHHHCCCCCCeE-EE--CCEEE
Confidence 4469999999552 223344456666555 4444433 33445688999955 55 56666
No 285
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=90.93 E-value=0.24 Score=41.47 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=33.1
Q ss_pred CCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC---CCccHHHHHHHHHHHhcCCC-----CcCceEEeCCCCcccc
Q 005115 16 HFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE---ERPDVDKVYMTYVQALYGGG-----GWPLSVFLSPDLKPLM 86 (714)
Q Consensus 16 ~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e---e~p~i~~~y~~~~q~~~g~~-----g~P~~vfl~p~g~p~~ 86 (714)
.||++|+...+ +.+..+-.|..|.||.. +.|+.. ..+...+|.. ++|..++ ++|+.+.
T Consensus 12 ~~Cp~C~~ak~-------~L~~~gi~y~~idI~~~~~~~~~~~~----~~l~~~~g~~~~~~~tvP~v~i--~~g~~ig 77 (87)
T 1aba_A 12 HKCGPCDNAKR-------LLTVKKQPFEFINIMPEKGVFDDEKI----AELLTKLGRDTQIGLTMPQVFA--PDGSHIG 77 (87)
T ss_dssp SCCHHHHHHHH-------HHHHTTCCEEEEESCSBTTBCCHHHH----HHHHHHHTCSCCTTCCSCEEEC--TTSCEEE
T ss_pred CcCccHHHHHH-------HHHHcCCCEEEEEeeccccccCHHHH----HHHHHHhCCCCCCCCccCEEEE--ECCEEEe
Confidence 39999998552 22233445665555532 333332 2334455777 8997654 5777764
No 286
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=90.74 E-value=0.17 Score=44.92 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=34.4
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
..++||++|++.. +.| +-.+-.|..|.|+ +.|++. ..+..++|...+|..++ +|+.|
T Consensus 26 ~~~~~Cp~C~~ak-~~L------~~~gi~y~~~di~--~d~~~~----~~l~~~~g~~tvP~ifi---~g~~i 82 (111)
T 3zyw_A 26 PQEPRCGFSKQMV-EIL------HKHNIQFSSFDIF--SDEEVR----QGLKAYSSWPTYPQLYV---SGELI 82 (111)
T ss_dssp SSSBSSHHHHHHH-HHH------HHTTCCCEEEEGG--GCHHHH----HHHHHHHTCCSSCEEEE---TTEEE
T ss_pred CCCCcchhHHHHH-HHH------HHcCCCeEEEECc--CCHHHH----HHHHHHHCCCCCCEEEE---CCEEE
Confidence 4469999999954 222 2233456655554 344443 33445668888998654 56666
No 287
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=90.59 E-value=1.4 Score=49.92 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=73.4
Q ss_pred cCCCCCCC---CCCCChhHHH---HHHHhhhhh---cc------cCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEE
Q 005115 167 RFGGFGSA---PKFPRPVEIQ---MMLYHSKKL---ED------TGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHR 231 (714)
Q Consensus 167 ~~GGfg~a---pKFP~~~~l~---~Ll~~~~~~---~~------~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~R 231 (714)
..|||-.| -||-.|+... +|+-+.... .+ .+....-+.+++.+..-++-|.+ .++.-.|+||.
T Consensus 137 l~GGwyDAGD~~K~~~p~a~t~~~L~~a~~~~~~~~~~~~~i~es~~~~~~~d~ldeikwg~D~llk--~~~~~~g~~y~ 214 (537)
T 3gzk_A 137 CPGGWHDAGDYGKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWLLT--MQDPATGGVYH 214 (537)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHTCCCSGGGSCSSCCCHHHHHHHHHHHHHHH--TBCTTTCCBBS
T ss_pred cccceecCCCcceecccHHHHHHHHHHHHHHhhhhhhhhhccccccCcccHHHHHHHHHHHHHHHHh--cccCCCCeEEE
Confidence 56999554 6876665332 344433211 00 01110135899999999998887 55433344443
Q ss_pred EecCCCC----CCCC--------CchhHHHHHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhc
Q 005115 232 YSVDERW----HVPH--------FEKMLYDQGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDM 284 (714)
Q Consensus 232 YsvD~~W----~vPH--------FEKMLyDNA~ll~~y~~Ay~~t~d------~~y~~~A~~~~~fl~~~m 284 (714)
=-.|..| ..|+ +.+-.--++.++.+++.|+++.++ ..|++.|+++++|+.++.
T Consensus 215 ~v~~~~w~g~~~~Pe~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~yA~~~L~~A~~~~~fa~~~~ 285 (537)
T 3gzk_A 215 KVTTPSFPPLDTRPEDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPALSSCCADAARRAYAWLGAHE 285 (537)
T ss_dssp EEECSSCCCTTCCGGGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred EecCCCcCCCCcCcccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 1225567 4444 222334589999999999999997 788899999999998753
No 288
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=90.59 E-value=0.42 Score=44.52 Aligned_cols=37 Identities=14% Similarity=0.007 Sum_probs=24.9
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|++++++++|+..+....-. ....|.+.++|+.|.+
T Consensus 126 ~p~~~liD~~G~i~~~~~g~~---~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 126 ARAVFVLDTDNTIRYVEYVDN---INSEPNFEAAIAAAKA 162 (163)
T ss_dssp CCEEEEECTTCBEEEEEECSB---TTSCCCHHHHHHHHHH
T ss_pred EEEEEEEcCCCeEEEEEecCC---cCCCCCHHHHHHHHHh
Confidence 399999999999986532111 1235677888877753
No 289
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=90.53 E-value=0.54 Score=54.16 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC--C--CC--CCCCCcc
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN--G--PS--KAPGFLD 488 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~--g--~~--~~~~~l~ 488 (714)
+-+..|||.|++++++. ...|. .++|+.|+++++|..++-- .+.....+ + .. ...++.|
T Consensus 291 ~~~AAalAaas~vfk~~--d~~ya--------~~~L~~A~~~~~fa~~~~~-----~y~~~~~~~~~~~~~~Y~ss~~~D 355 (609)
T 1ut9_A 291 LNFAATLAQSARLWKDY--DPTFA--------ADCLEKAEIAWQAALKHPD-----IYAEYTPGSGGPGGGPYNDDYVGD 355 (609)
T ss_dssp HHHHHHHHHHHHHHTTT--CHHHH--------HHHHHHHHHHHHHHHHCTT-----CCBCCCCSSSSCBSCCCCBSCCHH
T ss_pred HHHHHHHHHHHHhcccC--CHHHH--------HHHHHHHHHHHHHHHhCcc-----cccccccccCccCCCCCCCCCccc
Confidence 45677899999999751 01111 5789999999999987631 11100000 0 00 1123444
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005115 489 DYAFLISGLLDLYEFGSGTKWLVWAIEL 516 (714)
Q Consensus 489 DyA~li~all~LyeaTgd~~~L~~A~~L 516 (714)
+ +++|.++||.+|||..||+.|++.
T Consensus 356 E---l~WAAawLy~ATgd~~Yl~~a~~~ 380 (609)
T 1ut9_A 356 E---FYWAACELYVTTGKDEYKNYLMNS 380 (609)
T ss_dssp H---HHHHHHHHHHHHCCHHHHHHHHTS
T ss_pred H---HHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4 478899999999999999999864
No 290
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=90.30 E-value=4.1 Score=43.20 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005115 380 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL-VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 458 (714)
Q Consensus 380 ~~~~~~l~~~r~~L~~~R~~R~~P~~DdKilt~WNal-~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~ 458 (714)
+++.+..+..+++.+....+-+.+.-.+-.++--.|. |+.|+.. +| . +.=.++.+
T Consensus 17 ~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGqgYGMl~Av~~-----~d----------------~---~~FD~l~~ 72 (334)
T 1wzz_A 17 DAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQGYGMLFAASA-----GD----------------L---ASFQSMWM 72 (334)
T ss_dssp THHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHHHHHHHHHHHH-----TC----------------H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHHHHHHHHHHHh-----CC----------------H---HHHHHHHH
Confidence 4566667777777765432222233222224555554 3333322 23 1 22346788
Q ss_pred HHHHhccccCCCeEEEEec-CCCC---CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc
Q 005115 459 FIRRHLYDEQTHRLQHSFR-NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 534 (714)
Q Consensus 459 ~l~~~l~d~~~G~l~~~~~-~g~~---~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~ 534 (714)
|.++|+...++|.+-+.+. ++.. ....=.++=-+++.||+...+..++..|...|.+|++.+.++-....+|....
T Consensus 73 wt~~~l~~~~~~L~aW~~~~~~~~~v~d~n~AtDgDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~i~~~~v~~~~g~~~l 152 (334)
T 1wzz_A 73 WARTNLQHTNDKLFSWRFLKGHQPPVPDKNNATDGDLLIALALGRAGKRFQRPDYIQDAMAIYGDVLNLMTMKAGPYVVL 152 (334)
T ss_dssp HHHHHTBCSSSSCBCSEEETTSSSSSCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHEEEETTEEEE
T ss_pred HHHHHhccCCCCceEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCCeEEE
Confidence 8899987555676666654 2321 22233556678999999999999999999999999999888765443342222
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005115 535 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 592 (714)
Q Consensus 535 t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~ 592 (714)
.+.... . .+...+..-||= .+...+-.++..+++ ..|.+.++..++.+.
T Consensus 153 lPg~~g---f-~~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~ll~ 201 (334)
T 1wzz_A 153 MPGAVG---F-TKKDSVILNLSY--YVMPSLLQAFDLTAD---PRWRQVMEDGIRLVS 201 (334)
T ss_dssp CSCSSS---C-BCSSEEEECGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHH
T ss_pred CCCccc---c-cCCCCCeechhh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHH
Confidence 121110 0 000001111332 223556667888774 568888877777654
No 291
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=90.05 E-value=0.3 Score=51.64 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHHhcCCCC--cCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGG--WPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e--e~p~i~~~y~~~~q~~~g~~g--~P~~vfl~p~g~ 83 (714)
.|++||..|+.|... | .++|+.++..+.-+.||.+ +.+.+.+.| |..+ +|+.++++.++.
T Consensus 142 F~~~~~~~~~~~~~~-~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~f--------gi~~~~~P~~~~~~~~~~ 205 (361)
T 3uem_A 142 FLPKSVSDYDGKLSN-F--KTAAESFKGKILFIFIDSDHTDNQRILEFF--------GLKKEECPAVRLITLEEE 205 (361)
T ss_dssp ECCSSSSSHHHHHHH-H--HHHHGGGTTTCEEEEECTTSGGGHHHHHHT--------TCCTTTCSEEEEEECC--
T ss_pred EEeCCchhHHHHHHH-H--HHHHHHccCceEEEEecCChHHHHHHHHHc--------CCCccCCccEEEEEcCCc
Confidence 689999999988743 2 3577777777888899998 567777766 7655 999999987544
No 292
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=89.76 E-value=0.3 Score=46.55 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=21.2
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
.|++++++++|++.+...-.++ .+...++|+.|.
T Consensus 141 ~p~~~lID~~G~I~~~~~~~~~-----~~~~~~il~~l~ 174 (179)
T 3ixr_A 141 ERSTFLIGPTHRIVEAWRQVKV-----PGHAEEVLNKLK 174 (179)
T ss_dssp CCEEEEECTTSBEEEEECSCCS-----TTHHHHHHHHHH
T ss_pred ceEEEEECCCCEEEEEEcCCCC-----CCCHHHHHHHHH
Confidence 5889999999999854311111 234556666554
No 293
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=89.71 E-value=0.24 Score=45.82 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+||++|+... ..| +-++-.|..|.|+ +.|++.+ .++.++|...+|.. |+ +|+.|
T Consensus 47 ~~~Cp~C~~ak-~~L------~~~gv~y~~vdI~--~d~~~~~----~L~~~~G~~tvP~V-fI--~G~~i 101 (135)
T 2wci_A 47 LPSCGFSAQAV-QAL------AACGERFAYVDIL--QNPDIRA----ELPKYANWPTFPQL-WV--DGELV 101 (135)
T ss_dssp SBSSHHHHHHH-HHH------HTTCSCCEEEEGG--GCHHHHH----HHHHHHTCCSSCEE-EE--TTEEE
T ss_pred CCCCccHHHHH-HHH------HHcCCceEEEECC--CCHHHHH----HHHHHHCCCCcCEE-EE--CCEEE
Confidence 47999999854 222 2223346555554 4454433 33455688889975 44 56665
No 294
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=89.70 E-value=0.47 Score=44.30 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=24.8
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
.|.+++++++|+..+.....+ ....+.+.++|+.|.
T Consensus 129 ~p~~~liD~~G~i~~~~~~~~---~~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 129 ARAVFVLDADNKVVYKEIVSE---GTDFPDFDAALAAYK 164 (166)
T ss_dssp CCEEEEECTTCBEEEEEECSB---TTSCCCHHHHHHHHH
T ss_pred eeEEEEECCCCeEEEEEEcCC---cccCCCHHHHHHHHh
Confidence 799999999999986521111 123457888887765
No 295
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=87.63 E-value=0.67 Score=46.07 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=23.1
Q ss_pred CcCceEEeCCCCcccccccc-cCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty-~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.+|++++++++|+.++.... .+. .+...++++.|..
T Consensus 145 ~~P~~~lID~~G~I~~~~~g~~~~-----~~~~~ell~~l~~ 181 (221)
T 2c0d_A 145 ALRGLFIIDKNGCVRHQTVNDLPI-----GRNVQEVLRTIDS 181 (221)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTC-----CCCHHHHHHHHHH
T ss_pred ccceEEEECCCCeEEEEEecCCCC-----CCCHHHHHHHHHH
Confidence 58999999999999866322 221 1245566655543
No 296
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=87.45 E-value=15 Score=42.10 Aligned_cols=131 Identities=17% Similarity=0.262 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhccccc------------CCCCC--CCCCC-CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHH
Q 005115 150 QNALRLCAEQLSKSYDSR------------FGGFG--SAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQ 214 (714)
Q Consensus 150 ~~~~~~~~~~l~~~~D~~------------~GGfg--~apKF-P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~ 214 (714)
...+.++.+.|.+..-.. .|||+ ..+.+ |....-.+.+......+. ..++...+.+.+.++
T Consensus 330 ~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~----~~~~~~~~~l~~a~~ 405 (631)
T 2sqc_A 330 HDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL----PDERRRRDAMTKGFR 405 (631)
T ss_dssp CHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC----SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC----CccchhHHHHHHHHH
Confidence 346778888777654322 25553 34444 443322233332222111 111233455666666
Q ss_pred HHHhCCCcccCCCcEEEEecCC--CCC--CCCCch--------hHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 215 CMAKGGIHDHVGGGFHRYSVDE--RWH--VPHFEK--------MLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 215 ~m~~GGi~D~v~GGF~RYsvD~--~W~--vPHFEK--------MLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
-+.. . -.-+|||-.|..+. .|. +| |+. -+.+.|..+.++... +.+.+...++++++||.+
T Consensus 406 wLls--~-Q~~dGgf~~~~~~~~~~~~~~~~-F~~~~~~~d~~~vd~Ta~vl~aL~~~----g~~~~~~~i~rai~~L~~ 477 (631)
T 2sqc_A 406 WIVG--M-QSSNGGWGAYDVDNTSDLPNHIP-FSDFGEVTDPPSEDVTAHVLECFGSF----GYDDAWKVIRRAVEYLKR 477 (631)
T ss_dssp HHHH--T-CCTTSCBCSSCSSCCCSGGGGST-TCSSSCSSCCCBHHHHHHHHHHHHTT----TCCTTSHHHHHHHHHHHH
T ss_pred HHHh--h-cCCCCCCCccCCCCccccccccc-cccCCcccCCCCchHHHHHHHHHHhc----CCCccHHHHHHHHHHHHH
Confidence 6654 1 12358885444332 221 23 321 244677787777653 455667788999999987
Q ss_pred hccCCCCceee
Q 005115 283 DMIGPGGEIFS 293 (714)
Q Consensus 283 ~m~~p~Ggfys 293 (714)
++.++||||.
T Consensus 478 -~Q~~DGsw~g 487 (631)
T 2sqc_A 478 -EQKPDGSWFG 487 (631)
T ss_dssp -HCCTTSCCCC
T ss_pred -hcCCCCCCCC
Confidence 6788999864
No 297
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=87.28 E-value=1.6 Score=41.45 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=12.7
Q ss_pred CCCCCChhhHhhhhhh
Q 005115 13 RRTHFLIKCHVMEVES 28 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~ 28 (714)
....||+||+.+....
T Consensus 32 f~d~~Cp~C~~~~~~l 47 (193)
T 2rem_A 32 IFGYTCPHCAHFDSKL 47 (193)
T ss_dssp EECTTCHHHHHHHHHH
T ss_pred EECCCChhHhhhhHHH
Confidence 3568999999998653
No 298
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=87.14 E-value=1.3 Score=42.75 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=23.5
Q ss_pred cCCCCcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 67 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|+.|+|+.+| +|+.+.++. |.+ .|.++|+.+..
T Consensus 150 ~gv~gtPt~vv---ng~~~~~~~--~~e------~l~~~i~~ll~ 183 (193)
T 3hz8_A 150 FQIDGVPTVIV---GGKYKVEFA--DWE------SGMNTIDLLAD 183 (193)
T ss_dssp TTCCSSSEEEE---TTTEEECCS--SHH------HHHHHHHHHHH
T ss_pred hCCCcCCEEEE---CCEEEecCC--CHH------HHHHHHHHHHH
Confidence 37889999987 788887643 543 56666665543
No 299
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=86.74 E-value=0.76 Score=42.36 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=14.1
Q ss_pred CCCCcC------ceEEeCCCCccccc
Q 005115 68 GGGGWP------LSVFLSPDLKPLMG 87 (714)
Q Consensus 68 g~~g~P------~~vfl~p~g~p~~~ 87 (714)
|..+.| +++++ ++|+..+.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred CCcccccCCccceEEEE-cCCEEEEE
Confidence 555666 78888 99988754
No 300
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=83.92 E-value=1.6 Score=42.70 Aligned_cols=18 Identities=0% Similarity=-0.415 Sum_probs=15.7
Q ss_pred CcCceEEeCCCCcccccc
Q 005115 71 GWPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ 88 (714)
++|.+++++++|+..+..
T Consensus 138 ~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 138 TLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp ECEEEEEECTTSBEEEEE
T ss_pred ccceEEEECCCCEEEEEE
Confidence 589999999999998654
No 301
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=83.81 E-value=26 Score=40.30 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC-CeEEEEecCCCCCCCCCcc--
Q 005115 412 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT-HRLQHSFRNGPSKAPGFLD-- 488 (714)
Q Consensus 412 ~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~-G~l~~~~~~g~~~~~~~l~-- 488 (714)
.-.+..++.|++++..+++.-.....+-|-.+-..++.|+.++-..+|+++.. +++. |.++|...++.-.....++
T Consensus 197 ~p~a~t~~~L~w~~~~~~~~~~~~~~~ipes~~~~~d~ldeikwg~Dyllk~q-~~~~~g~~y~~vgd~~~~~~~~Pe~~ 275 (639)
T 1clc_A 197 VNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKYEIDWILTMQ-YPDGSGRVAHKVSTRNFGGFIMPENE 275 (639)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHTTCCCSSGGGGSSSCHHHHHHHHHHHHHHTTB-CTTSSCCBEEEEECSSCCCSCCGGGC
T ss_pred ccHHHHHHHHHHHHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCCCCCCCchhc
Confidence 34677888899988877652100000111001112689999999999999754 4445 8888875432111001111
Q ss_pred ------------hHHHHHHHHHHHHHHcC--Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCC
Q 005115 489 ------------DYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDH 550 (714)
Q Consensus 489 ------------DyA~li~all~LyeaTg--d~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~ 550 (714)
--+.++.+|...+.+-. |+ ++|+.|+++++.+.++ .|.+|..+.... ...|
T Consensus 276 ~~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~-----~~~~y~~~~~~~------~g~Y 344 (639)
T 1clc_A 276 HDERFFVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNN-----PANVFANQSGFS------TGEY 344 (639)
T ss_dssp CSCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC-----CSCCCCCCTTCC------SCCC
T ss_pred CCCceEecCCcHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCCcccc------cccc
Confidence 12344555555555543 43 5678888888887653 233332211000 0001
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005115 551 DGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 589 (714)
Q Consensus 551 D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~ 589 (714)
.. -+-.-..+++-..|+..||+ ..|++.+++...
T Consensus 345 ~s--s~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~~~ 378 (639)
T 1clc_A 345 AT--VSDADDRLWAAAEMWETLGD---EEYLRDFENRAA 378 (639)
T ss_dssp CC--SCSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH
T ss_pred CC--CCcchHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 00 11223577888889999996 789999877543
No 302
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=83.79 E-value=0.96 Score=42.28 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=23.1
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.|++++++++|+..+... .+ +....+...++++.|++
T Consensus 133 ~p~~~liD~~G~i~~~~~--~~-~~~~~~~~~~ll~~l~~ 169 (171)
T 2yzh_A 133 ARAVFIIDKEGKVAYVQL--VP-EITEEPNYDEVVNKVKE 169 (171)
T ss_dssp CCEEEEECTTSBEEEEEE--CS-BTTSCCCCHHHHHHHHH
T ss_pred eeEEEEEcCCCeEEEEEe--CC-CcCCCCCHHHHHHHHHh
Confidence 699999999999885531 11 11123456667666643
No 303
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=82.86 E-value=1.1 Score=44.66 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=35.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
..++||++|++..+ +.+..+-.|..|.|+.+ |.. ..+...+|..+.|..++ +|+.+.+
T Consensus 175 y~~~~Cp~C~~a~~-------~L~~~~i~~~~~~i~~~--~~~-----~~l~~~~g~~~vP~~~~---~g~~i~g 232 (241)
T 1nm3_A 175 FTKPGCPFCAKAKQ-------LLHDKGLSFEEIILGHD--ATI-----VSVRAVSGRTTVPQVFI---GGKHIGG 232 (241)
T ss_dssp EECSSCHHHHHHHH-------HHHHHTCCCEEEETTTT--CCH-----HHHHHHTCCSSSCEEEE---TTEEEES
T ss_pred EECCCChHHHHHHH-------HHHHcCCceEEEECCCc--hHH-----HHHHHHhCCCCcCEEEE---CCEEEEC
Confidence 45789999998642 22334456766666654 442 22334458889998654 5676643
No 304
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=82.67 E-value=3.7 Score=41.08 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=26.9
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 112 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~~ 112 (714)
.|.+++++++|++.+....- +..+.|.+-++|+.|...
T Consensus 137 ~p~tfvID~dG~I~~~~~~~---~~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 137 SPAIILADAANVVHYSERLA---NTRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CCEEEEECTTCBEEEEEECS---BTTCCCCHHHHHHHHHHH
T ss_pred cCEEEEEcCCCEEEEEEecC---CCCCCCCHHHHHHHHHHh
Confidence 69999999999998764321 123456788888777543
No 305
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=82.26 E-value=2.9 Score=40.24 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=12.8
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+.+..
T Consensus 146 ~~~~liD~~G~i~~~ 160 (200)
T 2b7k_A 146 IFFYLMDPEGQFVDA 160 (200)
T ss_dssp CCEEEECTTSCEEEE
T ss_pred ceEEEECCCCcEEEE
Confidence 488999999999854
No 306
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=81.33 E-value=0.79 Score=46.69 Aligned_cols=36 Identities=11% Similarity=-0.150 Sum_probs=22.6
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
..|.+++++++|+..+...+-.+. .....++|+.|.
T Consensus 181 ~~p~tflID~~G~I~~~~~~~~~~----~~~~~eil~~L~ 216 (254)
T 3tjj_A 181 TLRGLFIIDDKGILRQITLNDLPV----GRSVDETLRLVQ 216 (254)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTC----CCCHHHHHHHHH
T ss_pred ccceEEEECCCCeEEEEEecCCCC----CCCHHHHHHHHH
Confidence 479999999999998664321111 124556666553
No 307
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=81.25 E-value=2.1 Score=41.61 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=23.7
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
.|++++++++|+.++.... + +....+.+.++|+.+
T Consensus 165 ~p~~~lID~~G~I~~~~~~-~--~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 165 ARAVVVLDGQDNVIYSELV-N--EITTEPNYDAALAAL 199 (200)
T ss_dssp CCEEEEECTTSBEEEEEEC-S--BTTSCCCHHHHHHHH
T ss_pred ccEEEEECCCCeEEEEEec-C--CcccCCCHHHHHHhh
Confidence 5999999999999865311 1 112245788887765
No 308
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=80.93 E-value=23 Score=43.08 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCC-CcchHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHhcccc
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPG-FLDDYAFLISGLLDLYEFGSGTKWLV-WAIELQNTQDELFLDR 527 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~-~~g~~~~~~-~l~DyA~li~all~LyeaTgd~~~L~-~A~~L~~~~~~~F~D~ 527 (714)
+.|++..+||.+.... .+|.+.|.| .+|++...+ .+|-++..+.++..+++ + |..... ..+..++.+.++ |..
T Consensus 348 e~A~~~l~~L~~~Q~~-~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~-~-d~~~w~~~v~~al~~i~~~-g~~ 423 (1020)
T 1ulv_A 348 EAAARGVEWLFTYQQQ-PDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGR-T-DAGFYRNELKPAADYLVAA-GPK 423 (1020)
T ss_dssp HHHHHHHHHHHHHTCC-TTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTC-C-CHHHHHHTHHHHHHHHHHH-CSC
T ss_pred HHHHHHHHHHHHHhcC-CCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHh-CCC
Confidence 5678888888876533 257788876 466654332 56888999998888766 4 455455 677778887765 311
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH---HHHHHhCCCC-chHHHHHHHHHHHHHHHH
Q 005115 528 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV---RLASIVAGSK-SDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 528 ~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~Ll---rL~~lt~~~~-~~~y~e~A~~~l~~~~~~ 594 (714)
.+-+. ++...+..+..+++...+|. +|++..|+.+ .+.|++.|+++-+.+...
T Consensus 424 ~~~~~--------------WEe~~g~~~~t~~~~~~AL~~aa~lA~~~G~~~~a~~w~~~Ad~i~~~i~~~ 480 (1020)
T 1ulv_A 424 TPQER--------------WEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKW 480 (1020)
T ss_dssp BSBCT--------------TSSCCBEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHH
T ss_pred CChhh--------------hcccCCcCHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHh
Confidence 11011 11112333555554444444 4555555411 235667776666665443
No 309
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=80.72 E-value=1.2 Score=47.14 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 250 QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 250 NA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
-|..+.+++++|..++++.|++.+++.++||+. |+.++||+-
T Consensus 76 Ta~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 117 (332)
T 1gxm_A 76 TITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN-SQYSTGALP 117 (332)
T ss_dssp THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCTTSCCB
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-ccCCCCCcc
Confidence 578888899999999999999999999999997 999999983
No 310
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=80.62 E-value=1.7 Score=41.49 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.2
Q ss_pred CCCCCChhhHhhhhh
Q 005115 13 RRTHFLIKCHVMEVE 27 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e 27 (714)
....||+||+.++..
T Consensus 29 f~d~~Cp~C~~~~~~ 43 (195)
T 2znm_A 29 FFGYFCVHCHHFDPL 43 (195)
T ss_dssp EECTTSCCTTSSCHH
T ss_pred EECCCChhHHHHhHH
Confidence 457899999998754
No 311
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=80.51 E-value=1.5 Score=44.10 Aligned_cols=35 Identities=11% Similarity=-0.156 Sum_probs=22.4
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
..|.+++++++|+..+...+-.+. ...+.++|+.|
T Consensus 167 ~~p~~flID~~G~I~~~~~~~~~~----~~~~~eil~~l 201 (240)
T 3qpm_A 167 TLRGLFIIDEKGVLRQITMNDLPV----GRSVDETLRLV 201 (240)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTB----CCCHHHHHHHH
T ss_pred ccceEEEEcCCCeEEEEEecCCCC----CCCHHHHHHHH
Confidence 579999999999998664321111 12456666655
No 312
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=80.40 E-value=3.4 Score=38.79 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=12.1
Q ss_pred cCceEEeCCCCccc
Q 005115 72 WPLSVFLSPDLKPL 85 (714)
Q Consensus 72 ~P~~vfl~p~g~p~ 85 (714)
.|.+++++|+|+..
T Consensus 134 ~~~~~liD~~G~i~ 147 (170)
T 4hde_A 134 GTSFYLIDQNGKVM 147 (170)
T ss_dssp CCEEEEECTTSCEE
T ss_pred eeEEEEEcCCCeEE
Confidence 37889999999987
No 313
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=79.67 E-value=15 Score=43.05 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--C----------CeEEEEecCCCCC
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--T----------HRLQHSFRNGPSK 482 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~--~----------G~l~~~~~~g~~~ 482 (714)
++++.||.+++. ..+ +++.+...++.+||.+...... + |++-.++.+ .
T Consensus 390 alal~AL~~ag~-~~~----------------~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~---~ 449 (732)
T 1w6k_A 390 AFAIQALLEAGG-HHR----------------PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLD---C 449 (732)
T ss_dssp HHHHHHHHHTTG-GGC----------------GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTT---T
T ss_pred HHHHHHHHHcCC-Ccc----------------hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCC---C
Confidence 788889988863 222 4577888999999987754321 1 323111111 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhcccccCCccc--cCCCCCCccc--ccccc-----CC
Q 005115 483 APGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGGYF--NTTGEDPSVL--LRVKE-----DH 550 (714)
Q Consensus 483 ~~~~l~DyA~li~all~LyeaTg---d~~~L~~A~~L~~~~~~~F~D~~~Ggff--~t~~~~~~li--~r~k~-----~~ 550 (714)
.....++-|+++.+|..+....+ +....+...+..+.+...- . .+|+|- +.. .....+ +.+.+ ..
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q-~-~DGgw~a~~~~-~~~~~l~~i~~~e~fg~~~~ 526 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMR-N-PDGGFATYETK-RGGHLLELLNPSEVFGDIMI 526 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTC-C-TTSCBCSSSCC-CSCGGGGGGCCCSSCSSCSS
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc-C-CCCCEEeecCC-CchHHHhhCcchhccccccc
Confidence 12456788999999999988753 3344444555556665543 3 357773 221 111110 00011 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 551 DGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 551 D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
|...+..++.++.+|..+.........+++...+++.++.+...
T Consensus 527 d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 527 DYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 22233455556666666665432211123455566666665543
No 314
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.15 E-value=1.6 Score=38.38 Aligned_cols=62 Identities=11% Similarity=-0.063 Sum_probs=32.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEE-EEEcCCCCccHHHHHHHHHHHh--------cCCCCcCceEEeCCCCc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQAL--------YGGGGWPLSVFLSPDLK 83 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~-vkvD~ee~p~i~~~y~~~~q~~--------~g~~g~P~~vfl~p~g~ 83 (714)
.+++||++|++.++. ..+.++|+++=|+ ..+|.++.|+..+.+ +.. +|...+|.. |+ +|+
T Consensus 13 y~~~~C~~C~~~~~~----~~ak~~L~~~gi~y~~vdI~~~~~~~~~l----~~~~~~~~~~~~g~~tvP~v-fi--~g~ 81 (111)
T 2ct6_A 13 FIASSSGFVAIKKKQ----QDVVRFLEANKIEFEEVDITMSEEQRQWM----YKNVPPEKKPTQGNPLPPQI-FN--GDR 81 (111)
T ss_dssp EECSSCSCHHHHHHH----HHHHHHHHHTTCCEEEEETTTCHHHHHHH----HHSCCTTTCCSSSSCCSCEE-EE--TTE
T ss_pred EEcCCCCCcccchhH----HHHHHHHHHcCCCEEEEECCCCHHHHHHH----HHHhcccccccCCCCCCCEE-EE--CCE
Confidence 357999999952211 0133455543333 235555556544433 233 266667865 44 455
Q ss_pred cc
Q 005115 84 PL 85 (714)
Q Consensus 84 p~ 85 (714)
.|
T Consensus 82 ~i 83 (111)
T 2ct6_A 82 YC 83 (111)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 315
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=78.85 E-value=2.1 Score=38.63 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=31.2
Q ss_pred cCCCCCChhhHhhhhhhCCCHHHHHHHhcccE--EEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 12 TRRTHFLIKCHVMEVESFEDEGVAKLLNDWFV--SIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 12 ~~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv--~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
|...+.|+||++.. ++|++.-| ...+|.++.|++.+.. ..++|..-+|- ||+ +|+.|
T Consensus 29 t~~~P~C~fc~~ak----------~lL~~~gv~~~~~~~v~~~~~~r~~l----~~~sg~~TvPq-IFI--~g~~I 87 (118)
T 2wul_A 29 TPEQPQCGFSNAVV----------QILRLHGVRDYAAYNVLDDPELRQGI----KDYSNWPTIPQ-VYL--NGEFV 87 (118)
T ss_dssp CSSSBSSHHHHHHH----------HHHHHTTCCSCEEEETTSCHHHHHHH----HHHHTCCSSCE-EEE--TTEEE
T ss_pred CCCCCCCHHHHHHH----------HHHHHhCCcCeEeecccCCHHHHHHH----HHhccCCCCCe-EeE--CCEEE
Confidence 45678999999844 45554333 1345556666655433 33444333443 354 35555
No 316
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=78.30 E-value=0.99 Score=42.04 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=22.5
Q ss_pred cCceEEeCCCCccccccc-ccCCCCCCCCccHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGT-YFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~t-y~p~~~~~~~~~f~~~L~~i 109 (714)
.|.+++++++|+..+... +-+. ..+.+.++|+.|
T Consensus 130 ~p~~~liD~~G~i~~~~~~~~~~----~~~~~~~~l~~l 164 (165)
T 1q98_A 130 SRAVIVLDEQNNVLHSQLVEEIK----EEPNYEAALAVL 164 (165)
T ss_dssp CCEEEEECTTSBEEEEEECSBTT----SCCCHHHHHHTT
T ss_pred ceeEEEEcCCCEEEEEEeCCCCC----CCCCHHHHHHhh
Confidence 499999999999886531 1111 235677777654
No 317
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=76.77 E-value=14 Score=44.55 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=71.6
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---EecCCC----C
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFRNGP----S 481 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~---~~~~g~----~ 481 (714)
.+.+|..+.+.++.+.++.+||.... .+.....++.++|+.++. ++ +|.+.. .+.+.. +
T Consensus 625 ~~~~~~~~~i~~~~~yy~~tGD~~~L------------~e~yp~lk~~l~~~~~~~-d~-~GLl~~~~~~~~DW~d~~~~ 690 (956)
T 2okx_A 625 VIPNWTFFWILACREYAAHTGNEAFA------------ARIWPAVKHTLTHYLEHI-DD-SGLLNMAGWNLLDWAPIDQP 690 (956)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHH------------HHHHHHHHHHHHHHHTTB-CT-TSSBCCSSCCCCCSSSCCCC
T ss_pred CCcChHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHHhcC-CC-CCCEEeCCCCccCccCCCCC
Confidence 45678888899999999999982111 234456777888888764 43 453321 111110 0
Q ss_pred CCCCCcchHHHHHH---HHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccC
Q 005115 482 KAPGFLDDYAFLIS---GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 535 (714)
Q Consensus 482 ~~~~~l~DyA~li~---all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t 535 (714)
.......+.+++.. .+.++.+..|++ +|.+.|.++.+.+.++|||++.|.|.+.
T Consensus 691 ~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~wd~~~g~y~d~ 751 (956)
T 2okx_A 691 NEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDC 751 (956)
T ss_dssp SSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHSEETTTTEECSE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEee
Confidence 11112345555444 445666777763 4999999999999999999876666553
No 318
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=75.51 E-value=3.2 Score=39.50 Aligned_cols=16 Identities=6% Similarity=-0.219 Sum_probs=14.2
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
.|++++++++|+..+.
T Consensus 118 ~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 118 DRATFVVDPQGIIQAI 133 (186)
T ss_dssp CEEEEEECTTSBEEEE
T ss_pred eeEEEEECCCCeEEEE
Confidence 6999999999998865
No 319
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=75.45 E-value=4.9 Score=42.26 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=43.5
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQ 150 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~ 150 (714)
..|++++++++|+..+.-.=+.+. -...++|+.+.+. .+.-..+.+.|+...+... -.+..+++
T Consensus 101 ~~r~tfiId~~G~i~~~~~~v~~~-----~h~~~~l~~~~~~--------~~~~~~~~~~I~~RRSiR~---F~~~~V~~ 164 (322)
T 4eo3_A 101 TVRSTFLIDRWGFVRKEWRRVKVE-----GHVQEVKEALDRL--------IEEDLSLNKHIEWRRARRA---LKKDRVPR 164 (322)
T ss_dssp ECCEEEEECTTSBEEEEEESCCST-----THHHHHHHHHHHH--------HHHHTSCCHHHHHCCCCCC---BCCCCCCH
T ss_pred CccEEEEECCCCEEEEEEeCCCcc-----ccHHHHHHHHhhh--------chhhhHHHHHHHhhhccCC---cCccccCH
Confidence 378999999999987542112222 1578888888755 2222345566665444321 11234677
Q ss_pred HHHHHHHHHH
Q 005115 151 NALRLCAEQL 160 (714)
Q Consensus 151 ~~~~~~~~~l 160 (714)
+.++++++.-
T Consensus 165 e~l~~ileaA 174 (322)
T 4eo3_A 165 EELELLIKAA 174 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877544
No 320
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=75.42 E-value=26 Score=40.17 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCC------CcEEEEecCCCCC----CCCCchh--------HHHHHHHHHHHHHHHHc
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVG------GGFHRYSVDERWH----VPHFEKM--------LYDQGQLANVYLDAFSL 263 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~------GGF~RYsvD~~W~----vPHFEKM--------LyDNA~ll~~y~~Ay~~ 263 (714)
-+++++.+..-++-|.+ .++.-+ |+.+--.+|..|- .|.-..| .---+..+.+++.|+++
T Consensus 226 ~~d~ldeikwg~D~llk--~q~~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~v 303 (609)
T 1ut9_A 226 YPDILDEARWEIEFFKK--MQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARL 303 (609)
T ss_dssp SCHHHHHHHHHHHHHHH--HBCCTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hccCCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHh
Confidence 36788888888888877 444332 5555456677884 3432211 11245667788999999
Q ss_pred cCC------hHHHHHHHHHHHHHHHh
Q 005115 264 TKD------VFYSYICRDILDYLRRD 283 (714)
Q Consensus 264 t~d------~~y~~~A~~~~~fl~~~ 283 (714)
.++ ..+++.|++.++|..++
T Consensus 304 fk~~d~~ya~~~L~~A~~~~~fa~~~ 329 (609)
T 1ut9_A 304 WKDYDPTFAADCLEKAEIAWQAALKH 329 (609)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 864 45677889999998874
No 321
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=75.01 E-value=4.4 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=30.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcC--CCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~---~Fv~vkvD~ee~p~i~~~y~~~~q~~~g--~~g~P~~vfl~p~g~p~ 85 (714)
.+++||++|++.++. ..+.++|++ .|..|.|+ +.|+.. ..++..+| ...+|..+ + +|+.+
T Consensus 7 y~~~~C~~c~~~~~~----~~ak~~L~~~~i~~~~~di~--~~~~~~----~~l~~~~g~~~~~vP~if-i--~g~~i 71 (93)
T 1t1v_A 7 YSTSVTGSREIKSQQ----SEVTRILDGKRIQYQLVDIS--QDNALR----DEMRTLAGNPKATPPQIV-N--GNHYC 71 (93)
T ss_dssp EECSSCSCHHHHHHH----HHHHHHHHHTTCCCEEEETT--SCHHHH----HHHHHHTTCTTCCSCEEE-E--TTEEE
T ss_pred EEcCCCCCchhhHHH----HHHHHHHHHCCCceEEEECC--CCHHHH----HHHHHHhCCCCCCCCEEE-E--CCEEE
Confidence 357899999522211 112334443 45554444 444332 23344556 56888754 4 45554
No 322
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=74.88 E-value=2.2 Score=46.44 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHc-c--CChHHHHHHHHHHHHHHHhccCCCCcee
Q 005115 250 QGQLANVYLDAFSL-T--KDVFYSYICRDILDYLRRDMIGPGGEIF 292 (714)
Q Consensus 250 NA~ll~~y~~Ay~~-t--~d~~y~~~A~~~~~fl~~~m~~p~Ggfy 292 (714)
-|..+.+++++|+. + +++.|++.+.+.++||+. |+.++||+-
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 195 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-SQFPNGGWP 195 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HSCTTSCCB
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH-ccCCCCCCc
Confidence 56788889999998 7 899999999999999997 999999983
No 323
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=74.87 E-value=6.8 Score=41.50 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC-CCcchHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-GFLDDYAF 492 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~-~~l~DyA~ 492 (714)
-.+++||..|++.-++ ++|.+.|+++++-|.++......|.+.-. ...|-.... -+++.-=+
T Consensus 109 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~i~~~~v~~~~g~~~llPg~~gf~~~~~~~~npSY~ 172 (334)
T 1wzz_A 109 LLIALALGRAGKRFQR----------------PDYIQDAMAIYGDVLNLMTMKAGPYVVLMPGAVGFTKKDSVILNLSYY 172 (334)
T ss_dssp HHHHHHHHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHEEEETTEEEECSCSSSCBCSSEEEECGGGC
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhcccCCCCeEEECCCcccccCCCCCeechhhc
Confidence 4788999999999997 78999999999999888765444543211 111111000 11111112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005115 493 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 493 li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
+..++-.+++.+++..|.+.+....+.+.+... +.+|
T Consensus 173 ~p~~~~~fa~~~~~~~W~~~~~~~~~ll~~~~~-~~tG 209 (334)
T 1wzz_A 173 VMPSLLQAFDLTADPRWRQVMEDGIRLVSAGRF-GQWR 209 (334)
T ss_dssp CHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCB-TTTT
T ss_pred CHHHHHHHHHccCCchHHHHHHHHHHHHHHccc-CCCC
Confidence 235566677889999999999988888866543 4444
No 324
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=73.57 E-value=94 Score=34.27 Aligned_cols=119 Identities=16% Similarity=0.076 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CCC-----CCC--------CcchHHHHHHHHHHHHHHcC
Q 005115 447 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSK-----APG--------FLDDYAFLISGLLDLYEFGS 505 (714)
Q Consensus 447 ~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g--------~~~-----~~~--------~l~DyA~li~all~LyeaTg 505 (714)
++.|+.++-..+||++. ++..|.+++...+| .+. .+. -.+--+.++.+|...+.+-.
T Consensus 112 ~d~ldeikwg~D~llk~--~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vfk 189 (466)
T 2xfg_A 112 NHILNNIKWACDYFIKC--HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFK 189 (466)
T ss_dssp HHHHHHHHHHHHHHHHT--CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHh--ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987 34467888865442 120 011 12223455666666666654
Q ss_pred --C----hHHHHHHHHHHHHHHHhccc---ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCC
Q 005115 506 --G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 576 (714)
Q Consensus 506 --d----~~~L~~A~~L~~~~~~~F~D---~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~ 576 (714)
| .++|+.|+++++.+.++--. ...++||... -+-.-.++++-..|+..||+
T Consensus 190 ~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~s~------------------s~~~DEl~WAAawLy~ATgd-- 249 (466)
T 2xfg_A 190 KVDGEYSKECLKHAKELFEFADTTKSDDGYTAANGFYNSW------------------SGFYDELSWAAVWLYLATND-- 249 (466)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCS------------------SCSHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCcCCCCccccccCCC------------------CCCchHHHHHHHHHHHHhCC--
Confidence 3 45688889999888775311 1112333320 01223567778889999996
Q ss_pred chHHHHHHHHHH
Q 005115 577 SDYYRQNAEHSL 588 (714)
Q Consensus 577 ~~~y~e~A~~~l 588 (714)
..|++.+++..
T Consensus 250 -~~Yl~~a~~~~ 260 (466)
T 2xfg_A 250 -SSYLDKAESYS 260 (466)
T ss_dssp -HHHHHHHHHTT
T ss_pred -HHHHHHHHHHH
Confidence 78999887643
No 325
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=73.28 E-value=16 Score=41.26 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=69.3
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 005115 411 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 486 (714)
Q Consensus 411 t~WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~~~g~~~~~~~ 486 (714)
++-||++.. .|++.++.+|+... ..+|.+.|.++.+.+.++||+++.|.++.. ..+|+......
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~------------a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~~~~~~~ 372 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAM------------ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLT 372 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCCB
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCCEeeeeh
Confidence 455677655 45667777776311 157999999999999999999887866432 22333211111
Q ss_pred cchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCC--CCChHHHHHHH
Q 005115 487 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVIN 564 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a--~PS~nsvaa~~ 564 (714)
. .+++-|+----++ ++|.++.+.+.+.|+.+ ||.-....+ .....|+. =|--|.+++.+
T Consensus 373 ~-------s~~~PL~~gi~~~---e~a~~v~~~l~~~l~t~--~GlrT~s~~-------s~~yW~GpNvW~~~~~l~i~g 433 (535)
T 2jg0_A 373 A-------AALFPLYVNAAAK---DRANKMATATKTHLLQP--GGLNTTSVK-------SGQQWDAPNGWAPLQWVATEG 433 (535)
T ss_dssp G-------GGGHHHHTTCSCH---HHHHHHHHHHHHHTEET--TEECSBSCC-------CSSSSSTTEECHHHHHHHHHH
T ss_pred h-------hhHHHHhcCCCCH---HHHHHHHHHHHHHhccC--CCCCCCcCC-------CccccCCCCcchhHHHHHHHH
Confidence 1 1112222111122 36778888887788753 443322211 11222332 24556666666
Q ss_pred HHHH
Q 005115 565 LVRL 568 (714)
Q Consensus 565 LlrL 568 (714)
|.+.
T Consensus 434 L~~y 437 (535)
T 2jg0_A 434 LQNY 437 (535)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 6553
No 326
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=71.69 E-value=5.1 Score=39.55 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=24.4
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
.+|.+++++|+|+..+...| |.. .| ..+-++|+.|..
T Consensus 127 ~~p~~flID~~G~I~~~~~~-~~~--~g-~~~~ell~~i~~ 163 (220)
T 1xcc_A 127 TCRCLFFISPEKKIKATVLY-PAT--TG-RNAHEILRVLKS 163 (220)
T ss_dssp ECEEEEEECTTSBEEEEEEE-CTT--BC-CCHHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 37999999999998866443 211 11 257777776643
No 327
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=71.11 E-value=4.8 Score=39.81 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=24.5
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
..|.+++++|+|+..+...| |.. .| ..+.++|+.|..
T Consensus 130 ~~p~~fiID~~G~I~~~~~~-~~~--~g-r~~~eil~~i~~ 166 (224)
T 1prx_A 130 TARVVFVFGPDKKLKLSILY-PAT--TG-RNFDEILRVVIS 166 (224)
T ss_dssp TCCEEEEECTTSBEEEEEEC-CTT--BC-CCHHHHHHHHHH
T ss_pred cceEEEEECCCCEEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 37999999999998866443 211 11 257777776643
No 328
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=71.05 E-value=10 Score=37.37 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=13.0
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+++..
T Consensus 178 pttfLID~~G~vv~~ 192 (215)
T 2i3y_A 178 FEKFLVGPDGIPVMR 192 (215)
T ss_dssp TCEEEECTTSCEEEE
T ss_pred ceEEEECCCCeEEEE
Confidence 799999999999854
No 329
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.04 E-value=14 Score=43.24 Aligned_cols=111 Identities=7% Similarity=0.079 Sum_probs=70.0
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--------ecCCCC
Q 005115 410 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--------FRNGPS 481 (714)
Q Consensus 410 lt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~--------~~~g~~ 481 (714)
+.++..+.+.++.+.++.+||.... ++.....++.++|+.++. ++ +|.+... +.++..
T Consensus 382 ~~d~~l~wi~~~~~yy~~tGD~~~L------------~e~~p~l~~~ld~~~~~~-d~-~GL~~~~~G~W~~~dW~d~~~ 447 (739)
T 3cih_A 382 IMDYTFYWFLSVYDYYMYSGDRHFV------------NQLYPRMQTMMDYVLGRT-NK-NGMVEGMSGDWVFVDWADGYL 447 (739)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHHH------------HHHHHHHHHHHHHHHTTB-CT-TSCBCCCTTCBCCSCCCTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHHHhc-CC-CCCcccCCCCcccCCCccccc
Confidence 3567777888999999999983111 344557777888887764 32 4432211 111101
Q ss_pred CCCC-CcchHHHHHHH---HHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcccc
Q 005115 482 KAPG-FLDDYAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 534 (714)
Q Consensus 482 ~~~~-~l~DyA~li~a---ll~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~ 534 (714)
...+ ..+..|++..+ +.++.++.|++ +|.+.|.+|.+.+.++|||++.|.|++
T Consensus 448 ~~~G~~~~~~a~~y~al~~~a~lA~~lG~~~~A~~y~~~A~~lk~a~~~~~wd~~~G~y~~ 508 (739)
T 3cih_A 448 DKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508 (739)
T ss_dssp CCSSEEHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCcccCeeEe
Confidence 1112 23345555444 45666777874 589999999999999999988776664
No 330
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=70.95 E-value=20 Score=38.47 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=36.7
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 005115 410 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 474 (714)
Q Consensus 410 lt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~ 474 (714)
+++|-..+...+++.++++|+. ..+|.+.|.++.+.+.+ +|+++.|.++.
T Consensus 237 lna~~~~~~~~la~la~~lg~~--------------a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d 286 (420)
T 2z07_A 237 FNAILQRANRDLYALAVLLQED--------------PYEIEEWIVRGEVGLEA-LWDREAGFYFS 286 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHH-TEETTTTEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCcc--------------HHHHHHHHHHHHHHHHH-hhCcccCeeEe
Confidence 3444444455677777888762 27899999999999999 99987776653
No 331
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=70.89 E-value=5.2 Score=39.98 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=24.3
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 111 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~~ 111 (714)
..|.+++++|+|+..+...| |.. .| ..+-++|+.|..
T Consensus 126 ~~p~~fiID~~G~I~~~~~~-~~~--~g-r~~~eilr~l~~ 162 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILY-PAT--TG-RNFSEILRVIDS 162 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEE-CTT--BC-CCHHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 47999999999998866443 211 11 257777776643
No 332
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=70.69 E-value=25 Score=37.94 Aligned_cols=129 Identities=8% Similarity=-0.044 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC--CCCCCcchHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHhcccc
Q 005115 454 ESAASFIRRHLYDEQTHRLQHSFR-NGPS--KAPGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~~G~l~~~~~-~g~~--~~~~~l~DyA~li~all~LyeaTgd~---~~L~~A~~L~~~~~~~F~D~ 527 (714)
.++.+|.++|+..+.+|.+-+.+. +|.. ....=.++=-+++.||+...+..++. .|+..|.+|++.+.++-...
T Consensus 98 D~l~~wt~~~l~~~~~~L~aW~~~~~g~~~~d~n~AtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il~~i~~~~~~~ 177 (386)
T 1v5d_A 98 DGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVT 177 (386)
T ss_dssp HHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHTHHHHHBC
T ss_pred HHHHHHHHHHhccCCCCCeEEEECCCCCcCCCCCCCCHHHHHHHHHHHHHHHHcCCCchHhHHHHHHHHHHHHHHhcccC
Confidence 456778888887545666655553 2221 12233556678999999999999998 89999999999888775543
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005115 528 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 528 ~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~i 595 (714)
.++..-..+.. +...+..-|| =.+...|-.+++++++ ..|.+.++..++.+....
T Consensus 178 ~~~~l~~g~~~--------~~~~~~~npS--Y~~p~~l~~f~~~~~~---~~W~~v~~~~~~~l~~~~ 232 (386)
T 1v5d_A 178 NNNQLNLGDWD--------SKSSLDTRPS--DWMMSHLRAFYEFTGD---KTWLTVINNLYDVYTQFS 232 (386)
T ss_dssp TTSSBCSSTTS--------CTTCCCBCGG--GCCHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred CCCeeeecccC--------CCCCCeechh--hccHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Confidence 33221111100 0011111233 1344457777888875 568888887777765443
No 333
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=70.13 E-value=3.8 Score=38.49 Aligned_cols=15 Identities=13% Similarity=-0.157 Sum_probs=12.5
Q ss_pred cCceEEeCCCCccccc
Q 005115 72 WPLSVFLSPDLKPLMG 87 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~ 87 (714)
+|.++++ ++|+..+.
T Consensus 124 ~p~t~lI-~~G~I~~~ 138 (167)
T 2wfc_A 124 KRYSLVI-EDGVVTKV 138 (167)
T ss_dssp CCEEEEE-ETTEEEEE
T ss_pred eEEEEEE-eCCEEEEE
Confidence 5899999 99998865
No 334
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=70.01 E-value=6.9 Score=38.22 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.1
Q ss_pred CceEEeCCCCccccc
Q 005115 73 PLSVFLSPDLKPLMG 87 (714)
Q Consensus 73 P~~vfl~p~g~p~~~ 87 (714)
|++++++++|+++..
T Consensus 160 ~ttflID~~G~i~~~ 174 (207)
T 2r37_A 160 FEKFLVGPDGIPIMR 174 (207)
T ss_dssp TCEEEECTTSCEEEE
T ss_pred ceEEEECCCCcEEEE
Confidence 799999999999854
No 335
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=69.60 E-value=1.3e+02 Score=32.60 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHH-h--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 005115 415 GLVISSFARASKI-L--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 489 (714)
Q Consensus 415 al~I~aLa~a~~~-~--~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~D 489 (714)
+..|.+|++++.. . ++ +.|.+++.++.+||+..... +|++-..+.+... ..-.|-||
T Consensus 152 a~vl~aL~rv~~~~t~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpdn~~y~~~IpFnDD 213 (408)
T 1r76_A 152 VTEIRFLAQVVSQLAPEEA----------------APYRDAALKGIEYLLASQFP--NGGWPQVWPLEGGYHDAITYNDD 213 (408)
T ss_dssp HHHHHHHHHHHHHSCGGGC----------------HHHHHHHHHHHHHHHHHSCT--TSCCBSBSSCCCGGGGSEECGGG
T ss_pred HHHHHHHHHHHhhcccccc----------------HHHHHHHHHHHHHHHHccCC--CCCCcCcCccccccccCCCcCcH
Confidence 7889999999987 5 44 78999999999999988775 5666443332211 11234444
Q ss_pred H-HHHHHHHHHHHHHcC-----Ch----HHHHHHHHHHHHHHHhcccccCCccc
Q 005115 490 Y-AFLISGLLDLYEFGS-----GT----KWLVWAIELQNTQDELFLDREGGGYF 533 (714)
Q Consensus 490 y-A~li~all~LyeaTg-----d~----~~L~~A~~L~~~~~~~F~D~~~Ggff 533 (714)
- +.+++.|..+++..+ ++ +....+.+-.+.++..- .+.+|.+|
T Consensus 214 vt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Q-e~~dGsw~ 266 (408)
T 1r76_A 214 ALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQ-VVQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHS-CEETTEEC
T ss_pred HHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhh-cccCCccc
Confidence 4 556666767766333 23 44444455555555443 22245554
No 336
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=68.77 E-value=18 Score=42.67 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--C--CCCCcchH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--K--APGFLDDY 490 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~--~~~~l~Dy 490 (714)
.+.+.++.+.++.+||..........+.+ +...-.+..+++.+|+.+++ ++ +|.+.....+... . .....+-.
T Consensus 429 lw~~~~~~~y~~~tGD~~~L~e~~p~~~~-~~~~v~e~~~~~~~~~~~~~-~~-~GL~~~~~~DW~D~~~~~~g~~v~~~ 505 (807)
T 1v7w_A 429 LWLIPTICKYVMETGETSFFDQMIPYADG-GEASVYEHMKAALDFSAEYV-GQ-TGICKGLRADWNDCLNLGGGESSMVS 505 (807)
T ss_dssp GGHHHHHHHHHHHHCCGGGGGCEEECTTS-CEEEHHHHHHHHHHHHHHSB-CT-TSCBEEETCSSSTTCCCEEEEEHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHhcccccccC-CcchHHHHHHHHHHHHHhcC-CC-CCCcccCCCCCCCcCCCCCCeehhHH
Confidence 66888999999999984222110000000 00122345888889988765 43 5654432222210 0 11123334
Q ss_pred HHHH---HHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCC
Q 005115 491 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 491 A~li---~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
|++. ..+.++.+..|++ +|.+.|.+|.+.+.++|||++++
T Consensus 506 a~~y~al~~~a~la~~lG~~~~a~~~~~~A~~lk~~~~~~~w~~~~~ 552 (807)
T 1v7w_A 506 FLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGG 552 (807)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4444 4445666777764 68999999999999999997644
No 337
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}
Probab=68.20 E-value=3.2 Score=44.59 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEE-cCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKV-DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkv-D~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
+++||+||+...+..++.. +-.|..|.| +.++.. -+...+..++..+|...+|.. |+ +|+.|
T Consensus 267 sk~~CPyC~~Ak~~LL~~~------gV~y~eidVlEld~~~-~~~e~~~~L~~~tG~~TVPqV-FI--~Gk~I 329 (362)
T 2jad_A 267 SKTYCPYSHAALNTLFEKL------KVPRSKVLVLQLNDMK-EGADIQAALYEINGQRTVPNI-YI--NGKHI 329 (362)
T ss_dssp ECTTCHHHHHHHHHHHTTT------CCCTTTEEEEEGGGST-THHHHHHHHHHHHCCCSSCEE-EE--TTEEE
T ss_pred EcCCCcchHHHHHHHHHHc------CCCcceEEEEEecccc-CCHHHHHHHHHHHCCCCcCEE-EE--CCEEE
Confidence 5689999998653323222 223322222 222221 123344455566788899975 44 56665
No 338
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=67.53 E-value=64 Score=36.91 Aligned_cols=154 Identities=12% Similarity=-0.011 Sum_probs=84.7
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc---cccCCCeEEEEecCC------
Q 005115 409 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL---YDEQTHRLQHSFRNG------ 479 (714)
Q Consensus 409 ilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l---~d~~~G~l~~~~~~g------ 479 (714)
..+-..+..++.|++++.-+++.-.. .| ..++.|+.++-..+|+++.- .++..|.+++...+|
T Consensus 122 Ky~~p~a~t~~~L~w~~~e~~~~~~~-------~g-~~~d~ldeikwg~Dyllkmq~~~~~~~~g~~y~qVgdg~~Dh~~ 193 (611)
T 2yik_A 122 KFGLPEAYAASTVGWGYYEFKDQFRA-------TG-QAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAF 193 (611)
T ss_dssp EEHHHHHHHHHHHHHHHHHSHHHHHH-------TT-CHHHHHHHHHHHHHHHHHTEEECTTSCEEEEEEEESCHHHHTTC
T ss_pred eeccchHHHHHHHHHHHHHhHHHHhh-------cC-CchhHHHHHHHHHHHHHHcccccccCCCCcEEEEeCCCCccccC
Confidence 34445566777777776655431100 01 12789999999999999852 144457788765442
Q ss_pred --CCC---CCC--C-------cch-HHHHHHHHHHHHHHcC--C----hHHHHHHHHHHHHHHHhcccccCCccccCCCC
Q 005115 480 --PSK---APG--F-------LDD-YAFLISGLLDLYEFGS--G----TKWLVWAIELQNTQDELFLDREGGGYFNTTGE 538 (714)
Q Consensus 480 --~~~---~~~--~-------l~D-yA~li~all~LyeaTg--d----~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~ 538 (714)
.|. ..+ + -.| -+.++.+|...+.+-. | .++|+.|+++++.+.++- |.|......
T Consensus 194 w~~Pe~~~~~R~~y~v~~~~pgsd~a~~~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~ 268 (611)
T 2yik_A 194 WGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNP-----KGVVQGEDG 268 (611)
T ss_dssp CSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSC-----CCCCCGGGT
T ss_pred CCChhhCCCCCcceeecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcC-----CcccCCCcc
Confidence 110 001 0 011 2445555555555543 4 456888888888886642 222111000
Q ss_pred CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005115 539 DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 587 (714)
Q Consensus 539 ~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~ 587 (714)
....|.. -+-.-..+++-..|+..||+ ..|++.+++.
T Consensus 269 -------~~~~Y~s--s~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~ 305 (611)
T 2yik_A 269 -------PKGYYGS--SKWQDDYCWAAAWLYLATQN---EHYLDEAFKY 305 (611)
T ss_dssp -------TTTTSCC--CCSHHHHHHHHHHHHHHHCC---HHHHHHHHHH
T ss_pred -------cCcCCCC--CCcccHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 0001100 11223567788889999996 7899888664
No 339
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=67.38 E-value=2.2 Score=41.57 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=28.3
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 52 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~ 52 (714)
.++.||++|+.|+...=-.+++++.+..+.+-+++|.+..
T Consensus 120 Ff~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 120 FFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp EECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred EECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 6889999999998542133456666656677777887664
No 340
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=66.94 E-value=1.3e+02 Score=36.11 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc---c
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL---D 526 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~Dy-A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~---D 526 (714)
+.+++..+.+.+... .+|.+.+.+.++. .....|+ .+++.++.++|+.|||.++|+..-..++...+.+. |
T Consensus 595 ~lar~~L~~l~~~Q~--~dG~ip~~~p~~~---~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d 669 (956)
T 2okx_A 595 EIVERCLNLVPGSAD--ETPLYLDQVPSAW---SSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHID 669 (956)
T ss_dssp HHHHHHHHHGGGGTT--TCTTCCSBSSCSS---CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhhcc--cCCCcCccccccc---cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555555554432 2465655432211 1234566 57889999999999999999876655555554432 3
Q ss_pred ccCCccccCCCCCCcccccccc---CCCCCCCChHHHHHH---HHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 005115 527 REGGGYFNTTGEDPSVLLRVKE---DHDGAEPSGNSVSVI---NLVRLASIVAGSK-SDYYRQNAEHSLAVFETRL 595 (714)
Q Consensus 527 ~~~Ggff~t~~~~~~li~r~k~---~~D~a~PS~nsvaa~---~LlrL~~lt~~~~-~~~y~e~A~~~l~~~~~~i 595 (714)
+ +| +...... .. ..+.+ ..++.....|+.+.. .+.+|+.+.|+.+ ...|++.|+++-+.|....
T Consensus 670 ~-~G-Ll~~~~~--~~-~DW~d~~~~~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~ 740 (956)
T 2okx_A 670 D-SG-LLNMAGW--NL-LDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVL 740 (956)
T ss_dssp T-TS-SBCCSSC--CC-CCSSSCCCCSSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHS
T ss_pred C-CC-CEEeCCC--Cc-cCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3 23 3322100 00 00000 011111224555444 4556666777532 3569999999888886654
No 341
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=66.50 E-value=3.6 Score=46.69 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=35.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~ 86 (714)
..++||++|+.+.+ ..+.++-.|..|.||.++. +..+..+++.++|...+|.. |+ +|+.+.
T Consensus 23 y~~~~Cp~C~~~k~-------~L~~~~i~~~~~dv~~~~~---~~~~~~~l~~~~g~~tvP~v-~i--~g~~ig 83 (598)
T 2x8g_A 23 FSKTTCPYCKKVKD-------VLAEAKIKHATIELDQLSN---GSAIQKCLASFSKIETVPQM-FV--RGKFIG 83 (598)
T ss_dssp EECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGSTT---HHHHHHHTHHHHSCCCSCEE-EE--TTEEEE
T ss_pred EECCCChhHHHHHH-------HHHHCCCCcEEEEcccCcc---hHHHHHHHHHHhCCceeCEE-EE--CCEEEE
Confidence 45789999998552 1223344566565655432 23344455556788899976 43 455553
No 342
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=66.33 E-value=14 Score=34.24 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.6
Q ss_pred CcCceEEeCCCCcccc
Q 005115 71 GWPLSVFLSPDLKPLM 86 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~ 86 (714)
..|.+++++|+|+...
T Consensus 126 ~~~~~~lID~~G~i~~ 141 (170)
T 3me7_A 126 HPNVVVVLSPELQIKD 141 (170)
T ss_dssp CCCEEEEECTTSBEEE
T ss_pred cCceEEEECCCCeEEE
Confidence 4588999999999874
No 343
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=66.27 E-value=9.6 Score=41.92 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEE
Q 005115 153 LRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRY 232 (714)
Q Consensus 153 ~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RY 232 (714)
.++.++.+.+......|||+...+- .+..+.|.+.....-+. ..++..++-+...|..|.. -+|||.-|
T Consensus 75 ~~~hi~~l~~~lq~~~gg~~a~D~~-r~~l~y~~l~aL~lLg~----~~~~~~~~r~v~~l~s~Q~------~dGGf~g~ 143 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLDE----PIPQIVATDVCQFLELCQS------PEGGFGGG 143 (437)
T ss_dssp HHHHHHHHHHHTTEECGGGGGGTTC-HHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHBC------TTSSBBSS
T ss_pred HHHHHHHHHHcCCCCCCCcccccCC-CccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhCC------CCCCcCCc
Confidence 3566777777756678899875443 23333333332222111 1123445556666666643 46999863
Q ss_pred ecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChH-HHH-HHHHHHHHHHHhccCCCCceeeecc
Q 005115 233 SVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVF-YSY-ICRDILDYLRRDMIGPGGEIFSAED 296 (714)
Q Consensus 233 svD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~-y~~-~A~~~~~fl~~~m~~p~Ggfysa~D 296 (714)
.|..+|.. .-...+.+++ +.+... +.+ ..+++++||.+ ++.|+|||+.+..
T Consensus 144 ----~~~~~~i~----~T~~Al~aL~----~lg~~~~~~~i~i~kav~~L~s-~Q~~DGsf~~~~~ 196 (437)
T 2h6f_B 144 ----PGQYPHLA----PTYAAVNALC----IIGTEEAYDIINREKLLQYLYS-LKQPDGSFLMHVG 196 (437)
T ss_dssp ----TTCCBCHH----HHHHHHHHHH----HHCCHHHHTTSCHHHHHHHHHT-TBCTTSCBBSSTT
T ss_pred ----cCCCcchh----HHHHHHHHHH----HhCCcccccchHHHHHHHHHHH-hCCCCCCeeecCC
Confidence 48777753 2222222222 223321 111 26789999987 7889999986533
No 344
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=65.54 E-value=4.4 Score=37.49 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.4
Q ss_pred cCceEEeCCCCcccccc
Q 005115 72 WPLSVFLSPDLKPLMGG 88 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ 88 (714)
.|.+++++ +|+..+..
T Consensus 128 ~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 128 RRFALLVD-DLKVKAAN 143 (162)
T ss_dssp CCEEEEEE-TTEEEEEE
T ss_pred eeEEEEEE-CCEEEEEE
Confidence 79999999 99988653
No 345
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=64.48 E-value=9.2 Score=41.35 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
-.+++||..|++.-++. | ..+|++.|+++++-|.++...+.++.+. ..+......-++..-=++.
T Consensus 138 l~IA~ALl~A~~~Wg~~-----------g--~~~Y~~~A~~il~~i~~~~~~~~~~~l~--~g~~~~~~~~~~npSY~~p 202 (386)
T 1v5d_A 138 LDIAYSLLLAHKQWGSN-----------G--TVNYLKEAQDMITKGIKASNVTNNNQLN--LGDWDSKSSLDTRPSDWMM 202 (386)
T ss_dssp HHHHHHHHHHHHHHCSS-----------S--SSCHHHHHHHHHHHTHHHHHBCTTSSBC--SSTTSCTTCCCBCGGGCCH
T ss_pred HHHHHHHHHHHHHcCCC-----------c--hHhHHHHHHHHHHHHHHhcccCCCCeee--ecccCCCCCCeechhhccH
Confidence 47889999999999871 0 0279999999999998887654444332 1111110111222222344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
.+|-.+|+++++..|.+.+....+.+.+.
T Consensus 203 ~~l~~f~~~~~~~~W~~v~~~~~~~l~~~ 231 (386)
T 1v5d_A 203 SHLRAFYEFTGDKTWLTVINNLYDVYTQF 231 (386)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56667788899999999988877776543
No 346
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=64.10 E-value=57 Score=39.71 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcccccC-CCCCCCCCCCChhH---------------------HHHHHHhhhhhcccCCCCCCHHHHHH
Q 005115 151 NALRLCAEQLSKSYDSRF-GGFGSAPKFPRPVE---------------------IQMMLYHSKKLEDTGKSGEASEGQKM 208 (714)
Q Consensus 151 ~~~~~~~~~l~~~~D~~~-GGfg~apKFP~~~~---------------------l~~Ll~~~~~~~~~~~~~~~~~~~~~ 208 (714)
+++.+.+..|+-.-+..+ ||+--+|-+|.|.. +..|+.... .+.
T Consensus 284 ~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~--------------~e~ 349 (1020)
T 1ulv_A 284 TQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD--------------EEA 349 (1020)
T ss_dssp HHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC--------------HHH
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC--------------HHH
Confidence 455666666776667764 99988888776521 112222110 223
Q ss_pred HHHHHHHHHhCCCc-ccCCCcEEEEecCCC--CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHH-HHHHHHHHHHHh
Q 005115 209 VLFTLQCMAKGGIH-DHVGGGFHRYSVDER--WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSY-ICRDILDYLRRD 283 (714)
Q Consensus 209 ~~~TL~~m~~GGi~-D~v~GGF~RYsvD~~--W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~-~A~~~~~fl~~~ 283 (714)
+...|+-|++ +. .+-|.-.++|.+|.. |.- .-+.-.++.|+++...++ ++ ..... .++.+++|+.+.
T Consensus 350 A~~~l~~L~~--~Q~~~~G~~~~~y~i~G~~~w~~----~Q~D~~g~~l~~~~~~~~-~d-~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 350 AARGVEWLFT--YQQQPDGHFPQTSRVDGTIGQNG----IQLDETAFPILLANQIGR-TD-AGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp HHHHHHHHHH--HTCCTTSCCCSCBCTTSCBCCCC----CBTHHHHHHHHHHHHHTC-CC-HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhcCCCCCeeeEEecCCCcCCCC----ccCccchHHHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHh
Confidence 4444444443 11 111222456777643 432 123338888888877554 44 44444 899999999986
No 347
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=61.78 E-value=26 Score=37.60 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=34.9
Q ss_pred HHHHHH---HHHHHHHHcCC--hHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 490 YAFLIS---GLLDLYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 490 yA~li~---all~LyeaTgd--~~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
.|++.. .+.++++..|+ .+|.++|.++.+.+.+ |||++.|.||+..
T Consensus 238 na~~~~~~~~la~la~~lg~~a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~~ 288 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQEDPYEIEEWIVRGEVGLEA-LWDREAGFYFSWD 288 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-TEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH-hhCcccCeeEeee
Confidence 355444 44456666675 6899999999999999 9999888888654
No 348
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=60.54 E-value=53 Score=38.88 Aligned_cols=116 Identities=11% Similarity=-0.036 Sum_probs=65.1
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC--hHHHHHHHHHHHHHHHHhccccCCCeEEEE---ec
Q 005115 403 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSD--RKEYMEVAESAASFIRRHLYDEQTHRLQHS---FR 477 (714)
Q Consensus 403 P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~--~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~---~~ 477 (714)
++.|+- ...|.++.+..+.+||.....+ .-|..... .....+..+++.+++.+++ ++ +|..... |.
T Consensus 412 ~~~D~~------lW~i~av~~Y~~~TGD~~~L~e-~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GL~~~g~~DWn 482 (811)
T 3qde_A 412 NFNDDP------LWLILATAAYIKETGDYSILKE-QVPFNNDPSKADTMFEHLTRSFYHVVNNL-GP-HGLPLIGRADWN 482 (811)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGGS-EEEETTEEEEEEEHHHHHHHHHHHHHTCB-CT-TSSBBCBTCSSS
T ss_pred Ccccch------hHHHHHHHHHHHHHCCHHHHHh-hhhhhcCCcccccHHHHHHHHHHHHHhcC-CC-CCCcccccCCch
Confidence 355665 6788999999999998321110 00000000 0023467778888888665 32 4433221 22
Q ss_pred CCCCC------CC-----------CC---cchHH---HHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccc
Q 005115 478 NGPSK------AP-----------GF---LDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 478 ~g~~~------~~-----------~~---l~DyA---~li~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~ 527 (714)
|+-.. +. +. .+-.+ .++..+.++.+..|++ +|.+.|.+|.+.+.++|||.
T Consensus 483 D~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~~~a~lA~~lGd~~~A~~~~~~A~~lk~a~~~~~Wdg 559 (811)
T 3qde_A 483 DCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYDG 559 (811)
T ss_dssp TTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSBCS
T ss_pred hhccccccccccCccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 32110 00 11 12223 3445566677777874 58999999999999999983
No 349
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=60.29 E-value=67 Score=38.07 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEec--CCCCC--C-CCCcchHHHHHHHHHHHHHHcCChHHHH
Q 005115 452 VAESAASFIRRHLYDEQTHRLQHSFR--NGPSK--A-PGFLDDYAFLISGLLDLYEFGSGTKWLV 511 (714)
Q Consensus 452 ~A~~~~~~l~~~l~d~~~G~l~~~~~--~g~~~--~-~~~l~DyA~li~all~LyeaTgd~~~L~ 511 (714)
.|++...++..+... +|.+.|.+. .+... + ..+.||..|++.++.++++.|||..+|+
T Consensus 383 ~ar~~il~~~~~Q~~--dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~ 445 (822)
T 3rrs_A 383 RARERIIDIASTQFA--DGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILD 445 (822)
T ss_dssp HHHHHHHHHHTTCCT--TSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhcc--cCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHH
Confidence 566666666666553 577878764 33221 1 4578999999999999999999999986
No 350
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=58.39 E-value=2.4e+02 Score=36.08 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
.++++.+...++++.. |-+-+|||.= | ++-+--.+--|..+..+++|-....-+ ..+..++++||.+
T Consensus 1043 ~~~~~~i~~g~~r~l~---~q~~dGsfs~------w--~~~~~s~wLTAyv~~~l~~A~~~~~v~--~~~l~~a~~~L~~ 1109 (1676)
T 3cu7_A 1043 QKLKKKLKEGMLSIMS---YRNADYSYSV------W--KGGSASTWLTAFALRVLGQVNKYVEQN--QNSICNSLLWLVE 1109 (1676)
T ss_dssp HHHHHHHHHHHHHGGG---GBCTTSCBCS------S--SSSCCCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---ccCCCCCccc------c--CCCCCcEEEeHHHHHHHHHHHhcccCC--HHHHHHHHHHHHH
Confidence 3455566666666643 5677899873 5 344456788999999999998765323 4677899999998
Q ss_pred hccCCCCcee
Q 005115 283 DMIGPGGEIF 292 (714)
Q Consensus 283 ~m~~p~Ggfy 292 (714)
+-+.++|.|-
T Consensus 1110 ~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1110 NYQLDNGSFK 1119 (1676)
T ss_dssp HSBCTTSCBC
T ss_pred hhCCCCCccc
Confidence 4455677663
No 351
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=57.42 E-value=6.7 Score=37.57 Aligned_cols=36 Identities=11% Similarity=-0.022 Sum_probs=21.2
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRK 108 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~ 108 (714)
.+|.+++++ ||++.+.... |.......++..++|++
T Consensus 148 ~~r~tfiId-dG~I~~~~~~-~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 148 SKRYSMLVE-DGVVKALNIE-ESPGQATASGAAAMLEL 183 (184)
T ss_dssp ECCEEEEEE-TTEEEEEEEC-SSTTCCSTTSHHHHHHH
T ss_pred ceeEEEEEC-CCEEEEEEEe-CCCCCCcCCCHHHHHhh
Confidence 368888885 9998765322 11111234567777765
No 352
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=56.19 E-value=25 Score=37.40 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
-++++||.+|++..++ ++|.+.|+++..-|.++... +|.+.. +.+.... ..++.---+..
T Consensus 117 l~IA~ALl~A~~~W~~----------------~~Y~~~A~~I~~~i~~~~~~--~g~l~~-~~d~~~~-~~~ln~SY~~~ 176 (350)
T 3ren_A 117 LRIIKALLLANNRWNS----------------FYYKFYAINIANSLLKHAEE--NETLVD-YIDNYGK-GNTTTLCYLDL 176 (350)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHEE--TTEECS-EECSSCB-CSEEEGGGCCH
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHHccc--cCcccC-CCCccCC-CCEeehHhcCH
Confidence 4689999999999998 79999999999999998775 355532 2222111 22233323345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~ 523 (714)
.++-.+++. +..|.+.+..-.+.+.+.
T Consensus 177 ~a~~~f~~~--~~~W~~l~~~g~~lL~~g 203 (350)
T 3ren_A 177 PTMKLLSQV--DKKWEGIYEKSNSIIENG 203 (350)
T ss_dssp HHHHHHHHH--CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhC
Confidence 666667776 477888887777777663
No 353
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=55.93 E-value=1e+02 Score=36.44 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCCC--CC-CCCcchHHHHHHHHHHHHHHcCChHHHH
Q 005115 451 EVAESAASFIRRHLYDEQTHRLQHSFR--NGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 511 (714)
Q Consensus 451 ~~A~~~~~~l~~~l~d~~~G~l~~~~~--~g~~--~~-~~~l~DyA~li~all~LyeaTgd~~~L~ 511 (714)
+.|++...++..+... +|.+.|.+. .++. .+ ..+.||..|++.++.++++.|||..+|+
T Consensus 375 ~~~r~~il~~~~~Q~~--dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~ 438 (811)
T 3qde_A 375 ERARERLLDLAATQLE--DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILK 438 (811)
T ss_dssp HHHHHHHHHHHTTBCT--TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhccc--CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHH
Confidence 3566666666666554 577888764 3332 12 4578999999999999999999999985
No 354
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=55.85 E-value=50 Score=39.20 Aligned_cols=116 Identities=12% Similarity=-0.079 Sum_probs=66.1
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC--hHHHHHHHHHHHHHHHHhccccCCCeEEEE---ec
Q 005115 403 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSD--RKEYMEVAESAASFIRRHLYDEQTHRLQHS---FR 477 (714)
Q Consensus 403 P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~--~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~---~~ 477 (714)
++.|+- ...|.++.+..+.+||.....+ .-|..... .....+..+++.+|+.+++ ++ +|...-. |.
T Consensus 419 ~~~D~~------lWl~~av~~Yi~~TGD~~~L~e-~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GLp~~g~gDWn 489 (822)
T 3rrs_A 419 GFNDDP------LWLIAGTAAYIKETGDFSILDE-PVPFDNEPGSEVPLFEHLTRSFEFTVTHR-GP-HGLPLIGRADWN 489 (822)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGGGGGS-EECSTTCTTCCEEHHHHHHHHHHHHHHSB-CT-TSSBBCBTCSSS
T ss_pred cccchH------hHHHHHHHHHHHHHCCHHHHHh-hhhhhccccccccHHHHHHHHHHHHHhcC-CC-CCCcccCCCcch
Confidence 355665 6788999999999998321110 00100000 0124567888899988765 32 4432211 22
Q ss_pred CCCCC------C-----------CCCc---chHH---HHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccc
Q 005115 478 NGPSK------A-----------PGFL---DDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 478 ~g~~~------~-----------~~~l---~DyA---~li~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~ 527 (714)
|+-.. + .+.- +-.+ .++..+.++.+..|++ +|.+.|.+|.+.+.++|||.
T Consensus 490 D~ln~~~~~~~vg~~~~~~~p~~~~~Gesv~~~al~y~AL~~~a~lA~~~G~~~~A~~~~~~A~~lk~a~~~~~Wdg 566 (822)
T 3rrs_A 490 DCLNLNCFSTTPGESFQTTENQAGGVAESTFIAAQFVLYGEQYAELAARRGLADVADRARGHVAEMRDALLTDGWDG 566 (822)
T ss_dssp TTCCTTCCCCSTTCCTTTCCSSCCCCCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTBCS
T ss_pred hhcccccccccccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCc
Confidence 32210 0 0111 2223 3445566777778874 58899999999999999973
No 355
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=55.55 E-value=15 Score=39.09 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccC-Ccc
Q 005115 454 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG-GGY 532 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~~-Ggf 532 (714)
.++.+|.+.++. +++.+.|.+..+......=.+|=-+.++||+...+..+++.|...|.+|.+.+.++-..... ..|
T Consensus 82 d~l~~~t~~~l~--~~~L~sWr~~~~~~~~nNAtdgDl~IA~ALl~A~~~W~~~~Y~~~A~~I~~~i~~~~~~~g~l~~~ 159 (350)
T 3ren_A 82 DEHFDIVKEMRL--KNGLISWRKEGDENSPSSATIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEENETLVDY 159 (350)
T ss_dssp HHHHHHHHTTBC--TTSSBCSEEETTEECSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEETTEECSE
T ss_pred HHHHHHHHHHhc--cCCceEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHccccCcccCC
Confidence 567889999998 36766666543321123334566788999999999999999999999999999987554210 124
Q ss_pred ccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005115 533 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 533 f~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~ 593 (714)
|+.... ..+++ ||= ++..+|-.|+.+. ..|.+.+++.++.+..
T Consensus 160 ~d~~~~--~~~ln---------~SY--~~~~a~~~f~~~~-----~~W~~l~~~g~~lL~~ 202 (350)
T 3ren_A 160 IDNYGK--GNTTT---------LCY--LDLPTMKLLSQVD-----KKWEGIYEKSNSIIEN 202 (350)
T ss_dssp ECSSCB--CSEEE---------GGG--CCHHHHHHHHHHC-----THHHHHHHHHHHHHHT
T ss_pred CCccCC--CCEee---------hHh--cCHHHHHHHHHhc-----chHHHHHHHHHHHHHh
Confidence 432211 22222 221 3444566666663 3467777776666654
No 356
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=54.05 E-value=63 Score=40.86 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
.++.+.+...++++.. |-+-+|||.-|.-+.. +-+--.+..|..+..+++|.....-+ ..+..++++||.+
T Consensus 979 ~~a~~~i~~g~~~ll~---~q~~dGgf~~f~~~~~----~~~~s~wlTAyv~~~l~~a~~~~~v~--~~~l~~a~~wL~~ 1049 (1451)
T 4acq_A 979 SKAIGYLNTGYQRQLN---YKHYDGSYSTFGERYG----RNQGNTWLTAFVLKTFAQARAYIFID--EAHITQALIWLSQ 1049 (1451)
T ss_dssp HHHHHHHHHHHHHHGG---GBCTTSCBCSSTTGGG----CCCCCHHHHHHHHHHHHHHTTTSCCC--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hcCCCCCeeeccCCCC----CCCCchhHHHHHHHHHHHhhhhcccC--HHHHHHHHHHHHh
Confidence 3466677777777765 6677899884421100 01122345899999999987653211 3578899999997
Q ss_pred hccCCCCcee
Q 005115 283 DMIGPGGEIF 292 (714)
Q Consensus 283 ~m~~p~Ggfy 292 (714)
.+.++|.|+
T Consensus 1050 -~Q~~dG~f~ 1058 (1451)
T 4acq_A 1050 -RQKDNGCFR 1058 (1451)
T ss_dssp -TEETTTEEC
T ss_pred -hcccCCccc
Confidence 467889886
No 357
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=53.18 E-value=12 Score=36.86 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=22.0
Q ss_pred CcCceEEeCCCCccccccccc-CCCCCCCCccHHHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYF-PPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~-p~~~~~~~~~f~~~L~~i~ 110 (714)
+.|+++++ ++|+..+..... +...........++|+.|.
T Consensus 124 ~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~ 163 (241)
T 1nm3_A 124 SWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTMLKYLA 163 (241)
T ss_dssp ECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred ceeEEEEE-ECCEEEEEEEeccCCCccceecCHHHHHHHhh
Confidence 45899999 999988653211 1100001145677777664
No 358
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=50.36 E-value=1.3e+02 Score=31.68 Aligned_cols=115 Identities=6% Similarity=0.031 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCC-----hhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 005115 152 ALRLCAEQLSKSYDSRFGGFGSAPKFPR-----PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 226 (714)
Q Consensus 152 ~~~~~~~~l~~~~D~~~GGfg~apKFP~-----~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~ 226 (714)
.+.+++..+...- ...||||.=++-+. ..++.+|.+...... .+ ..++.++++-+.. +-.-+
T Consensus 92 ~i~~g~~~ll~~Q-~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~------v~---~~~i~~a~~~L~~---~Q~~d 158 (367)
T 1hzf_A 92 LIQKGYMRIQQFR-KADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG------GS---PEKLQETSNWLLS---QQQAD 158 (367)
T ss_dssp HHHHHHHHHHTTB-CTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTC------CC---HHHHHHHHHHHGG---GBCTT
T ss_pred HHHHHHHHHHhcc-CCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhC------CC---HHHHHHHHHHHHH---hhccC
Confidence 4566666666444 44788875333222 223344444332210 11 3567777777755 33456
Q ss_pred CcEEEEecCCCCCCCCCch---------hHHHHHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHHHHhc
Q 005115 227 GGFHRYSVDERWHVPHFEK---------MLYDQGQLANVYLDAFSLTKD-------VFYSYICRDILDYLRRDM 284 (714)
Q Consensus 227 GGF~RYsvD~~W~vPHFEK---------MLyDNA~ll~~y~~Ay~~t~d-------~~y~~~A~~~~~fl~~~m 284 (714)
|+|.. .|.+-|-+. -++-.|..+.++.++.....+ +.+...++++++||.+.+
T Consensus 159 G~~~~-----~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 159 GSFQD-----PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp SCBCC-----SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-----ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 77863 566655432 266678888998888765544 346677889999998864
No 359
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=49.99 E-value=90 Score=36.28 Aligned_cols=91 Identities=8% Similarity=-0.075 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 005115 413 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 492 (714)
Q Consensus 413 WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~ 492 (714)
|--..+.||+.++.++++-+ +.++|++.|.+.++.-.+....++ |..+ +.-+.=+.+
T Consensus 261 h~l~~~~aL~~agl~~pe~~------------~~~~w~~~A~~~L~~el~~Qi~~D-G~~~----------E~Sp~Yh~~ 317 (702)
T 4fnv_A 261 ILISQANALATAGTLMPEFK------------NAEKWMNTGYQILSEEVQNQIMSD-GWHK----------EMSLHYHIG 317 (702)
T ss_dssp HHHHHHHHHHHHHHHCTTBT------------THHHHHHHHHHHHHHHHHHSBCTT-SCBT----------TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCc------------cHHHHHHHHHHHHHHHHHhhcCCC-Cccc----------cCCHHHHHH
Confidence 44445668888888887511 127899999998776666666653 4321 222334445
Q ss_pred HHHHHHHH---HHHcCC-----hHHHHHHHHHHHHHHHhcccc
Q 005115 493 LISGLLDL---YEFGSG-----TKWLVWAIELQNTQDELFLDR 527 (714)
Q Consensus 493 li~all~L---yeaTgd-----~~~L~~A~~L~~~~~~~F~D~ 527 (714)
++..++.+ .+..|- +.+.+...++...+. .+..+
T Consensus 318 vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~-~l~~P 359 (702)
T 4fnv_A 318 IVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVM-YFTYP 359 (702)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHH-HTSCG
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 55555443 344443 356677777777664 34444
No 360
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=49.99 E-value=1.6e+02 Score=31.61 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=53.5
Q ss_pred HHHHHHHHHhccccC---CCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHh
Q 005115 454 ESAASFIRRHLYDEQ---THRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAIELQNTQDEL 523 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~---~G~l~~~~~-~g~~-~~~~~l~DyA~li~all~LyeaTg-----d~~~L~~A~~L~~~~~~~ 523 (714)
.++.+|.+.+|..++ +|.+-+.+. +|.. ....=.|+=-+++.||+...+..+ +..|+..|.+|++.+.++
T Consensus 89 D~l~~wt~~~l~~~~~~~~~L~aW~~~~~~~~~~~n~AtDgDl~IA~ALl~A~~~Wg~~~g~~~~Y~~~A~~il~~i~~~ 168 (396)
T 1wu4_A 89 DRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTCVHN 168 (396)
T ss_dssp HHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCcccCCCceEEECCCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 567888888886655 565655553 3332 123334555789999999999999 689999999999999887
Q ss_pred ccc
Q 005115 524 FLD 526 (714)
Q Consensus 524 F~D 526 (714)
=..
T Consensus 169 ~~~ 171 (396)
T 1wu4_A 169 GEG 171 (396)
T ss_dssp TSS
T ss_pred hcc
Confidence 544
No 361
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=49.38 E-value=44 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=26.7
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++|+.+|++.+.+...+..++++|+.
T Consensus 41 s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 41 TLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999976
No 362
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=48.60 E-value=1.5e+02 Score=33.82 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
++.+.||.+|.++...- |.+.+.|.+.|.++.++| +++|+++ |.|.+.+.++.. ...-+|- +.++
T Consensus 190 ~~~~~aL~~aa~lA~~~-----------g~~~~~w~~~ad~i~~~i-~~~w~~~-g~f~~~~~~~~~-~~~~lDa-s~LL 254 (599)
T 2vn4_A 190 ANQHRALVEGATLAATL-----------GQSGSAYSSVAPQVLCFL-QRFWVSS-GGYVDSNINTNE-GRTGKDV-NSVL 254 (599)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TCCCHHHHHHHHHHHHHH-GGGEETT-TTEECSEESSCC-CCCCCBT-HHHH
T ss_pred HHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHH-HhhcCCC-CCEEEEecCccC-CCCCcCH-HHHh
Confidence 55666776665543220 111278999999999999 8999976 777766533210 0112232 3332
Q ss_pred HHHHHHHHH----------cCChHHHHHHHHHHHHHHH
Q 005115 495 SGLLDLYEF----------GSGTKWLVWAIELQNTQDE 522 (714)
Q Consensus 495 ~all~Lyea----------Tgd~~~L~~A~~L~~~~~~ 522 (714)
+.+-.|.. -.|++.+.....+.+.+..
T Consensus 255 -~~~~~f~~~~~~~~~~~~p~dpr~l~Tl~ai~~~L~~ 291 (599)
T 2vn4_A 255 -TSIHTFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRS 291 (599)
T ss_dssp -HHHHSCCGGGTTCTTTTCTTSHHHHHHHHHHHHHHHT
T ss_pred -hhhccCCccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 22222211 1567888777777776653
No 363
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=47.22 E-value=1.3e+02 Score=31.86 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC-C---CC-CCcchHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHhc
Q 005115 454 ESAASFIRRHLYDEQTHRLQHSFR-NGPS-K---AP-GFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELF 524 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~~G~l~~~~~-~g~~-~---~~-~~l~DyA~li~all~LyeaTgd~---~~L~~A~~L~~~~~~~F 524 (714)
.++.+|.+.|+.+ +|.+-+.+. +|+. . .. .=.++=-+.+.||+...+..++. .|...|++|++.+.++-
T Consensus 82 d~l~~wt~~~~~~--~~l~aW~~~~~g~~~~~~d~~~~AtDgDl~IA~ALl~A~~~W~~~g~~~Y~~~A~~i~~~i~~~~ 159 (363)
T 1kwf_A 82 DDLYRYVKSHFNG--NGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHC 159 (363)
T ss_dssp HHHHHHHHTTBCT--TSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCeEEEECCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHh
Confidence 4567777888843 455555553 3331 1 11 23556678999999999999988 89999999999999886
Q ss_pred ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005115 525 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 594 (714)
Q Consensus 525 ~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~~~~~~~y~e~A~~~l~~~~~~ 594 (714)
+.+ |.+.-.+.+.. ...+..-||= .+...+-.++.++++ ..|.+.++..++.+...
T Consensus 160 ~~~--~~~~l~pg~~~-------~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~~l~~~ 215 (363)
T 1kwf_A 160 VEH--GSYVLKPGDRW-------GGSSVTNPSY--FAPAWYKVYAQYTGD---TRWNQVADKCYQIVEEV 215 (363)
T ss_dssp BCT--TTCCBCSBSSS-------CBTTBBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHHH
T ss_pred ccC--CCeEEeccccC-------CCCCEecchh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHHH
Confidence 652 32212221100 0001112332 234456667777764 56888888777765443
No 364
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=46.58 E-value=38 Score=36.14 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
-.+++||..|++.-++.. ..+|.+.|+++++-|.++.+.+. ..++. ..+... ...+++.-=++.
T Consensus 123 l~IA~ALl~A~~~W~~~g-------------~~~Y~~~A~~i~~~i~~~~~~~~-~~~l~-pg~~~~-~~~~~npSY~~p 186 (363)
T 1kwf_A 123 EDIALALIFADKLWGSSG-------------AINYGQEARTLINNLYNHCVEHG-SYVLK-PGDRWG-GSSVTNPSYFAP 186 (363)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHHHHHHBCTT-TCCBC-SBSSSC-BTTBBCGGGCCH
T ss_pred HHHHHHHHHHHHHhCCCc-------------chhHHHHHHHHHHHHHHHhccCC-CeEEe-ccccCC-CCCEecchhcCH
Confidence 478899999999998710 02799999999999999887642 21111 111000 011222211223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005115 495 SGLLDLYEFGSGTKWLVWAIELQNTQDELF 524 (714)
Q Consensus 495 ~all~LyeaTgd~~~L~~A~~L~~~~~~~F 524 (714)
..+-.+++.+++..|.+.+..-.+.+.+..
T Consensus 187 ~~~~~fa~~~~~~~W~~~~~~~~~~l~~~~ 216 (363)
T 1kwf_A 187 AWYKVYAQYTGDTRWNQVADKCYQIVEEVK 216 (363)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHh
Confidence 334445667888899998888777776543
No 365
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=46.30 E-value=36 Score=37.09 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=44.3
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHH-
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF- 394 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~- 394 (714)
+|..+|. ....++.-.|++..+.. .+.+++|+.+|++.+.+...+..++++|+
T Consensus 353 ~L~~aL~~L~~rer~Vl~lr~~L~~~e~----------------------~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 353 ELEKALSKLSEREAMVLKLRKGLIDGRE----------------------HTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHTTCC---------------------------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 4555554 24678888888864211 35679999999999999999999999998
Q ss_pred h-hhhcCCCCCC
Q 005115 395 D-VRSKRPRPHL 405 (714)
Q Consensus 395 ~-~R~~R~~P~~ 405 (714)
. .|.++.+.++
T Consensus 411 ~~~~~~~l~~~l 422 (423)
T 2a6h_F 411 HESRTRKLRDFL 422 (423)
T ss_dssp HHHHTTSSSSCC
T ss_pred hhhhhHHHHHhh
Confidence 3 3455555444
No 366
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=45.44 E-value=64 Score=34.94 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=73.5
Q ss_pred HHHHHHHHHhc----cccC---CCeEEEEe--c-CCCCC-CC--CCcchHHHHHHHHHHHHHHcC---ChHHHHHHHHHH
Q 005115 454 ESAASFIRRHL----YDEQ---THRLQHSF--R-NGPSK-AP--GFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQ 517 (714)
Q Consensus 454 ~~~~~~l~~~l----~d~~---~G~l~~~~--~-~g~~~-~~--~~l~DyA~li~all~LyeaTg---d~~~L~~A~~L~ 517 (714)
.++.+|.+.+| ..++ +|.+-+.+ . +|... .. .=.|+=-+++.|||...+..+ +..|+..|.+|+
T Consensus 97 D~L~~wtk~~l~~~~~~~~g~~~~l~aW~~g~~~~g~~~d~n~~sAtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il 176 (405)
T 1h12_A 97 DNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARWGNSGEFNYYNDAITML 176 (405)
T ss_dssp HHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHHCSSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCcccceEEEeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Confidence 46788888888 3333 46666666 2 23321 11 223445689999999999999 789999999999
Q ss_pred HHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHH-HHHhCC-CCchHHHHHHHHHHHHHHH
Q 005115 518 NTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAG-SKSDYYRQNAEHSLAVFET 593 (714)
Q Consensus 518 ~~~~~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL-~~lt~~-~~~~~y~e~A~~~l~~~~~ 593 (714)
+.+.++- +.+|..-..+... .++ -||=-. -.++++ +.++++ .....|.+.++..++.+..
T Consensus 177 ~~I~~~~--~~~~~~~f~p~~~--~~~---------npSY~~---pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~ 238 (405)
T 1h12_A 177 NTIKNKL--MENQIIRFSPYID--NLT---------DPSYHI---PAFYDYFANNVTNQADKNYWRQVATKSRTLLKN 238 (405)
T ss_dssp HHHHHHS--EETTEECSCTTCS--SCB---------CGGGCC---HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCeeEEecCCC--Cee---------ChhhcC---HHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 9998875 3333221122111 111 233322 234444 666653 1114588888877777643
No 367
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=44.16 E-value=28 Score=37.09 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccccC--CCeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005115 454 ESAASFIRRHLYDEQ--THRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 525 (714)
Q Consensus 454 ~~~~~~l~~~l~d~~--~G~l~~~~~---~g~~---~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~ 525 (714)
.++.+|.+.|+...+ +|.+.+.+. +|.. ....=.|+=-+++.||+...+.-+++.|+..|.+|++.+.++-.
T Consensus 53 D~Lw~wt~~~l~~~d~~~~L~aW~w~~~~~g~~~v~D~nsAtDGDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~I~~~~v 132 (355)
T 3qxf_A 53 DNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEV 132 (355)
T ss_dssp HHHHHHHHHHHSTTCTTTSCCCSEEEECTTSCEEEEECSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhccCCcccCCceEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 457778888887643 344433332 2321 22233456678999999999999999999999999999988765
Q ss_pred ccc
Q 005115 526 DRE 528 (714)
Q Consensus 526 D~~ 528 (714)
.+.
T Consensus 133 ~~~ 135 (355)
T 3qxf_A 133 VTV 135 (355)
T ss_dssp EEE
T ss_pred ccC
Confidence 443
No 368
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=43.53 E-value=25 Score=35.57 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 281 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~ 281 (714)
.+++.+.+...++.+.. +-+-+|||.-|.-+ .| -.+..|..+..++.+-.... .-.++.+++++||.
T Consensus 33 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~----~~----s~wlTa~v~~~l~~a~~~~~--v~~~~i~~a~~~L~ 99 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLA---FKQPISAYAAFNNR----PP----STWLTAYVSRVFSLAANLIA--IDSQVLCGAVKWLI 99 (277)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS----CC----CHHHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCccccCCC----Cc----cHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Confidence 36788889999998886 67889999743211 22 35678999999999876532 22467789999998
Q ss_pred HhccCCCCceee
Q 005115 282 RDMIGPGGEIFS 293 (714)
Q Consensus 282 ~~m~~p~Ggfys 293 (714)
++.+.++|.|+.
T Consensus 100 ~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 100 LEKQKPDGVFQE 111 (277)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhccCCCCCccC
Confidence 646778998864
No 369
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.84 E-value=48 Score=27.23 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 319 KEVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 319 ~Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
++|.+++. .+..+|.-.|.+..+. | .+..++|+.+|++...+...+..++++|.
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~---------------~-------~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGK---------------P-------KTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSS---------------C-------CCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCC---------------C-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35566654 3567777777764211 1 35689999999999999999999999996
Q ss_pred h
Q 005115 395 D 395 (714)
Q Consensus 395 ~ 395 (714)
.
T Consensus 68 ~ 68 (87)
T 1tty_A 68 H 68 (87)
T ss_dssp T
T ss_pred H
Confidence 5
No 370
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=42.51 E-value=1.9e+02 Score=32.09 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=62.3
Q ss_pred CcchHHHHHHHHHHHHHHcCChH-----HHHHHHHHHHHHHHhccccc-CCccccCCC---CCCc--------------c
Q 005115 486 FLDDYAFLISGLLDLYEFGSGTK-----WLVWAIELQNTQDELFLDRE-GGGYFNTTG---EDPS--------------V 542 (714)
Q Consensus 486 ~l~DyA~li~all~LyeaTgd~~-----~L~~A~~L~~~~~~~F~D~~-~Ggff~t~~---~~~~--------------l 542 (714)
-+|-.|+.|.++-.+|+.|||.. |.+..+.+++.+.+...++. .|-|.+... ..+. +
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 46677999999999999999654 55667777777776554432 244443210 0011 1
Q ss_pred ccccccCCCCCC-----CChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhh
Q 005115 543 LLRVKEDHDGAE-----PSGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDM 598 (714)
Q Consensus 543 i~r~k~~~D~a~-----PS~nsvaa~~LlrL~~lt~~~-~~~~y~e~A~~~l~~~~~~i~~~ 598 (714)
+..---..|.++ -.+|+.+..+|-+++.+...- .+....++++++...+...|.++
T Consensus 258 i~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~ 319 (489)
T 2p0v_A 258 IASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKY 319 (489)
T ss_dssp CCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 100001112222 117888888888888776321 12344555555555555555444
No 371
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=42.07 E-value=4.6e+02 Score=30.30 Aligned_cols=27 Identities=11% Similarity=-0.298 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 005115 251 GQLANVYLDAFSLTKDVFYSYICRDIL 277 (714)
Q Consensus 251 A~ll~~y~~Ay~~t~d~~y~~~A~~~~ 277 (714)
...+..++-||++|+|..|.+.|++.+
T Consensus 209 ~~~l~~la~ay~ltgd~kya~~a~~~L 235 (776)
T 3a0o_A 209 IYAIRHLAIAGRVLGRDDLLDASRKWL 235 (776)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677888999999999999988777644
No 372
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=41.79 E-value=53 Score=37.59 Aligned_cols=77 Identities=10% Similarity=-0.103 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCC---------CCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005115 452 VAESAASFIRRHLYDEQTHRLQHSFRNGPSK---------APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 522 (714)
Q Consensus 452 ~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~---------~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~~ 522 (714)
..+++.+||.+...+. .|.+...++++.+. ..+-.+|-|+++.+|+.+.. ..+..+.+...+..+.+..
T Consensus 332 ~~~ka~~~L~~~q~~~-~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~-~~~~~~~~~l~~a~~wLls 409 (631)
T 2sqc_A 332 RLVKAGEWLLDRQITV-PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-PDERRRRDAMTKGFRWIVG 409 (631)
T ss_dssp HHHHHHHHHHHTCCCS-CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC-CccchhHHHHHHHHHHHHh
Confidence 5667788888876642 23221112222221 12446888999999988764 3334556666677777765
Q ss_pred hcccccCCcc
Q 005115 523 LFLDREGGGY 532 (714)
Q Consensus 523 ~F~D~~~Ggf 532 (714)
.- .+ +|||
T Consensus 410 ~Q-~~-dGgf 417 (631)
T 2sqc_A 410 MQ-SS-NGGW 417 (631)
T ss_dssp TC-CT-TSCB
T ss_pred hc-CC-CCCC
Confidence 53 22 4666
No 373
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=41.49 E-value=31 Score=31.02 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=24.1
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHH
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVD 56 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~ 56 (714)
.+|+.|+||++.++- ..+..+|+.+=|+.. +|.+..|+..
T Consensus 5 Ytt~~c~~c~~kk~c----~~aK~lL~~kgV~feEidI~~d~~~r 45 (121)
T 1u6t_A 5 YIASSSGSTAIKKKQ----QDVLGFLEANKIGFEEKDIAANEENR 45 (121)
T ss_dssp EECTTCSCHHHHHHH----HHHHHHHHHTTCCEEEEECTTCHHHH
T ss_pred EecCCCCCccchHHH----HHHHHHHHHCCCceEEEECCCCHHHH
Confidence 468999999755443 236677776555443 5555544433
No 374
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=41.41 E-value=20 Score=35.52 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.2
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|+.|+|+.+|.+++|+.+.|
T Consensus 167 ~GV~GtPtfvv~~~nG~~~~G 187 (226)
T 3f4s_A 167 LGITAVPIFFIKLNDDKSYIE 187 (226)
T ss_dssp HCCCSSCEEEEEECCTTCCCC
T ss_pred cCCCcCCEEEEEcCCCEEeeC
Confidence 489999999999999998754
No 375
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=40.98 E-value=39 Score=36.00 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEEecCCCCC---CCCCcchH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSFRNGPSK---APGFLDDY 490 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G-~l~~~~~~g~~~---~~~~l~Dy 490 (714)
-++++||..|++.-++ ++|.+.|+++++-|.++...+..| +..- .-|... .....-+=
T Consensus 98 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~I~~~~v~~~~g~~~~L--lpG~~gF~~~~~~~~nP 159 (355)
T 3qxf_A 98 VWMAWSLLEAGRLWKE----------------QRYTDIGSALLKRIAREEVVTVPGLGSML--LPGKVGFAEDNSWRFNP 159 (355)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHEEEETTTEEEE--CSSSSSSEETTEEEECT
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccccCCCCceee--cCcccCccCCCCCeech
Confidence 4788999999999998 789999999999998876653323 2221 111100 00000111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005115 491 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 522 (714)
Q Consensus 491 A~li~all~LyeaTgd~~~L~~A~~L~~~~~~ 522 (714)
++++-++++++... +..|.+.+..-.+.+.+
T Consensus 160 SY~~p~~~~~fa~~-~~~W~~l~~~~~~lL~~ 190 (355)
T 3qxf_A 160 SYLPPTLAQYFTRF-GAPWTTLRETNQRLLLE 190 (355)
T ss_dssp TSSCHHHHHHHGGG-CTTHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 22345666666555 77899988888888765
No 376
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=39.89 E-value=1.6e+02 Score=32.85 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCC---CCCC-hhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCccc
Q 005115 149 PQNALRLCAEQLSKSYDSRFGGFGSAP---KFPR-PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDH 224 (714)
Q Consensus 149 ~~~~~~~~~~~l~~~~D~~~GGfg~ap---KFP~-~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~ 224 (714)
+.+..+++++.+.+... ..|||++.| -.|+ ..++.-++-......... ...-+.......++++-+.. +..
T Consensus 107 d~~~~~~~I~~Ils~Q~-~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p-~~~~~~Id~~r~k~v~fL~s--lQ~- 181 (520)
T 3q7a_B 107 DQGTKDRVVSTLLHFLS-PKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSS-TGGWKDLAAARQSIYEFFMR--CKR- 181 (520)
T ss_dssp CHHHHHHHHHHHHTTBC-TTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSST-TSBHHHHHHTHHHHHHHHHH--HBC-
T ss_pred ChHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCcccc-chhhhhhhhHHHHHHHHHHH--HhC-
Confidence 44567778888876654 479999987 3444 222222221111110000 00001111012233333333 222
Q ss_pred CCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005115 225 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 293 (714)
Q Consensus 225 v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~p~Ggfys 293 (714)
-+|||+- ..|-.. .-...|- |..+.. +... .++ ..++++++||++ .+.++|||-.
T Consensus 182 ~DGSF~g----~~wGe~-Dir~TY~-Al~~L~---lLg~-~~~---~~v~kav~fI~s-cQn~DGGfGe 236 (520)
T 3q7a_B 182 PDGGFVV----CEGGEV-DVRGTYC-LLVVAT---LLDI-ITP---ELLHNVDKFVSA-CQTYEGGFAC 236 (520)
T ss_dssp TTSCBBS----STTCCB-CHHHHHH-HHHHHH---HHTC-CCH---HHHTTHHHHHHT-TBCTTSSBCS
T ss_pred CCCCEec----CCCCCc-hHHHHHH-HHHHHH---HcCC-CCh---HHHHHHHHHHHH-hcCCCCCccC
Confidence 3688863 256543 2223331 111111 1111 122 457889999987 6788999954
No 377
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=39.10 E-value=31 Score=35.52 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005115 202 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 281 (714)
Q Consensus 202 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~ 281 (714)
.+++.+++...++.+.. +-+-+|||.-|.- ..| -.+..|..+.+++.|-....- -.++.+++++||.
T Consensus 49 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~----~~~----s~wlTa~v~~~l~~a~~~~~v--~~~~i~~a~~~L~ 115 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLA---FRQPSSAFAAFVK----RAP----STWLTAYVVKVFSLAVNLIAI--DSQVLCGAVKWLI 115 (310)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTT----SCC----CHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCcccCCC----CCc----cHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Confidence 35778888888888876 5788999974321 122 356789999999998765321 2467789999998
Q ss_pred HhccCCCCceee
Q 005115 282 RDMIGPGGEIFS 293 (714)
Q Consensus 282 ~~m~~p~Ggfys 293 (714)
++.+.++|.|+.
T Consensus 116 ~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 116 LEKQKPDGVFQE 127 (310)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhhcCCCCcccc
Confidence 646778998864
No 378
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=37.07 E-value=15 Score=34.84 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=22.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 50 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~e 50 (714)
.+..||++|+.|+...=..+++++.+..+...++++..
T Consensus 21 f~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 21 FFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp EECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred EECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 46789999999985430235666655543333444433
No 379
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=36.92 E-value=35 Score=38.36 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.7
Q ss_pred cchHHHHHHHH---HHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 487 LDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 487 l~DyA~li~al---l~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
.|=.|++..++ .++++..|+. +|.++|.++.+.+.++|||++.|.|++..
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~ 361 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYD 361 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEe
Confidence 44466655554 4566667764 69999999999999999999888887643
No 380
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=36.38 E-value=24 Score=34.58 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=26.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 43 VSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 43 v~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
|.|..-.+..+++.+.| |..++|+.|++.++|++..-
T Consensus 185 i~v~~~~~~~~~l~~~f--------~v~~~Pslvl~~~~g~~~~~ 221 (244)
T 3q6o_A 185 VAVRRVLNTEANVVRKF--------GVTDFPSCYLLFRNGSVSRV 221 (244)
T ss_dssp EEEEEEETTCHHHHHHH--------TCCCSSEEEEEETTSCEEEC
T ss_pred eEEEEEeCchHHHHHHc--------CCCCCCeEEEEeCCCCeEee
Confidence 34443334445666666 88999999999999998754
No 381
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.90 E-value=17 Score=33.36 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=35.6
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.+.++|.+|++ +.++|+++=|.. .+|..+.|.-........ +..|||..-+++..|..+-.
T Consensus 7 Y~~p~C~~crk----------ak~~L~~~gi~~~~idi~~~~~~~~eL~~~~----~~~g~p~~~l~n~~~~~yk~ 68 (141)
T 1s3c_A 7 YHNPASGTSRN----------TLEMIRNSGTEPTIILYLENPPSRDELVKLI----ADMGISVRALLRKNVEPYEQ 68 (141)
T ss_dssp ECCTTCHHHHH----------HHHHHHHTTCCCEEECTTTSCCCHHHHHHHH----HHHTSCHHHHBCSSSHHHHH
T ss_pred EECCCChHHHH----------HHHHHHHcCCCEEEEECCCCCccHHHHHHHh----cccCCCHHHhccCCchhHHh
Confidence 46799999998 446676653332 355544432222222222 33489988888888766543
No 382
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=35.58 E-value=40 Score=36.59 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 494 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~~~~~~l~DyA~li 494 (714)
-.+++||..|++.-++.+ ..+|++.|+++++-|.++. +.++.+. +..+.. . .-+=++.+
T Consensus 147 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~I~~~~--~~~~~~~--f~p~~~---~-~~npSY~~ 205 (405)
T 1h12_A 147 EYFAFALLNASARWGNSG-------------EFNYYNDAITMLNTIKNKL--MENQIIR--FSPYID---N-LTDPSYHI 205 (405)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SCCHHHHHHHHHHHHHHHS--EETTEEC--SCTTCS---S-CBCGGGCC
T ss_pred HHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhC--CCCCeeE--EecCCC---C-eeChhhcC
Confidence 478899999999998411 0579999999999999887 3333332 222221 1 11222334
Q ss_pred HHHHHH-HHHcCC----hHHHHHHHHHHHHHHHhcccccCC
Q 005115 495 SGLLDL-YEFGSG----TKWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 495 ~all~L-yeaTgd----~~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
-+++++ ++++++ +.|.+.+....+.+.+.. .+.+|
T Consensus 206 pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~~~-~~~tG 245 (405)
T 1h12_A 206 PAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF-TKVSG 245 (405)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH-HHHSS
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc-CCCCC
Confidence 577777 566766 779998888777776554 23344
No 383
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=35.18 E-value=39 Score=37.05 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 320 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 320 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
+|..+|. ....++.-+|++..+. ..+..++|+.+|++.+.+...+..++++|+
T Consensus 368 ~L~~aL~~L~ereR~VI~LRygL~~~e----------------------~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 368 ELEKALSKLSEREAMVLKLRKGLIDGR----------------------EHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC----------------------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4555554 2457888888886421 135789999999999999999999999998
No 384
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.70 E-value=38 Score=28.09 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=27.0
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++|+.+|++...+...+..++++|...
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999764
No 385
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.42 E-value=36 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++|+.+|+++..+...+..++++|..
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999975
No 386
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=33.33 E-value=24 Score=31.44 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=32.8
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEE-EcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vk-vD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.++|.+|++- .++|+++=|.+. +|..+.|.-.......++. .|+|..-+++..|..+
T Consensus 9 Y~~p~C~~c~ka----------~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~----~g~~~~~l~n~~~~~~ 68 (120)
T 3gkx_A 9 LQYPACSTCQKA----------KKWLIENNIEYTNRLIVDDNPTVEELKAWIPL----SGLPVKKFFNTSGVVY 68 (120)
T ss_dssp EECTTCHHHHHH----------HHHHHHTTCCCEEEETTTTCCCHHHHHHHHHH----HTSCGGGGBCTTSHHH
T ss_pred EECCCChHHHHH----------HHHHHHcCCceEEEecccCcCCHHHHHHHHHH----cCCCHHHeEeCCCchh
Confidence 468999999983 456665433333 5554444322222222232 3677777777765544
No 387
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=33.12 E-value=22 Score=32.79 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=23.4
Q ss_pred cCCCCcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHH
Q 005115 67 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 109 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i 109 (714)
.|+.|+|+.+| .||+.+. +|.|++ .|.++|+.+
T Consensus 105 ~gI~gtPt~vi--~nG~~i~--G~~~~~------~l~~~i~~~ 137 (147)
T 3gv1_A 105 FGFNGTPTLVF--PNGRTQS--GYSPMP------QLEEIIRKN 137 (147)
T ss_dssp TTCCSSCEEEC--TTSCEEE--SCCCTT------HHHHHHHHT
T ss_pred hCCCccCEEEE--ECCEEee--CCCCHH------HHHHHHHHH
Confidence 38899999998 5788764 466765 566666543
No 388
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.97 E-value=60 Score=37.79 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=39.2
Q ss_pred hHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC
Q 005115 413 WNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP 480 (714)
Q Consensus 413 WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~ 480 (714)
-|+++.. .+++.++++|+... ..+|.+.|.++.+.+.+++|+++.|.+...+.+|.
T Consensus 456 ~~a~~y~al~~~a~lA~~lG~~~~------------A~~y~~~A~~lk~a~~~~~wd~~~G~y~~~~~~G~ 514 (739)
T 3cih_A 456 EQVLFCRSLETMALCADLVGDKDG------------QQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDGR 514 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeeEeecCCCC
Confidence 3555544 55666777776311 15799999999999999999987777665555553
No 389
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=32.61 E-value=2.2e+02 Score=33.09 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=34.2
Q ss_pred HHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 005115 414 NGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 476 (714)
Q Consensus 414 Nal~I~a---La~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~ 476 (714)
|+++..| +++.++.+|+... ..+|.+.|.++.+.+.+++|+++.+.+.+.+
T Consensus 505 ~a~~y~al~~~a~la~~lG~~~~------------a~~~~~~A~~lk~~~~~~~w~~~~~~f~~~~ 558 (807)
T 1v7w_A 505 SFLHFWALQEFIDLAKFLGKDQD------------VNTYTEMAANVREACETHLWDDEGGWYIRGL 558 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHHHHhccCCCCCeeeeee
Confidence 5665554 4555666665211 1579999999999999999997655444443
No 390
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=32.34 E-value=17 Score=37.42 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=33.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC-----------CccHHHHHHHHHHHhcCCCCc--CceEEeC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-----------RPDVDKVYMTYVQALYGGGGW--PLSVFLS 79 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee-----------~p~i~~~y~~~~q~~~g~~g~--P~~vfl~ 79 (714)
.++++|++|...+ ..++.... +.+.|++.++.++ +|+....- ...+...|..+. |.++|
T Consensus 49 yTs~gCp~C~~Ak-~lL~~~~~----~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~-~~~~~~~G~~tVyTPqI~I-- 120 (270)
T 2axo_A 49 FTSQGCASCPPAD-EALRKMIQ----KGDVVGLSYHVDYWNYLGWTDSLASKENTERQ-YGYMRALGRNGVYTPQAIL-- 120 (270)
T ss_dssp EECTTCTTCHHHH-HHHHHHHH----HTSSEEEEEECSTTCSSSSCCTTCCHHHHHHH-HHHHHHTTCSCCCSSEEEE--
T ss_pred EeCCCCCChHHHH-HHHHHhhc----cCCeeeEEEEEEEecccccccchhhhhhhHHH-HHHHHHhCCCcccCCEEEE--
Confidence 5789999999755 33322211 2356644444332 22221111 112233477777 98766
Q ss_pred CCCcccc
Q 005115 80 PDLKPLM 86 (714)
Q Consensus 80 p~g~p~~ 86 (714)
+|+...
T Consensus 121 -ng~~~v 126 (270)
T 2axo_A 121 -NGRDHV 126 (270)
T ss_dssp -TTTEEE
T ss_pred -CCEEee
Confidence 677533
No 391
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=31.88 E-value=56 Score=35.27 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC----CCCCCcchH
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS----KAPGFLDDY 490 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~----~~~~~l~Dy 490 (714)
-.+++||..|++.-++. +| +..+|++.|+++++-|.++......|.++ .-|.. ...+..-+=
T Consensus 131 l~IA~ALl~A~~~Wg~~----------~g-~~~~Y~~~A~~il~~i~~~~~~~~~~~~l---~p~~~~~~f~~~~~~~np 196 (396)
T 1wu4_A 131 EYFALALFFASHRWGDG----------DE-QPFNYSEQARKLLHTCVHNGEGGPGHPMW---NRDNKLIKFIPEVEFSDP 196 (396)
T ss_dssp HHHHHHHHHHHHHHCCC----------SS-TTCCHHHHHHHHHHHHHHTTSSSSCCCSB---CTTTCCBCSSTTCSEECG
T ss_pred HHHHHHHHHHHHHhCCC----------CC-CcHHHHHHHHHHHHHHHHhhccCCCccee---cCCCceeeecCCCCeeCh
Confidence 47889999999999841 00 01579999999999999876542111111 00100 000111122
Q ss_pred HHHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHhcccccCC
Q 005115 491 AFLISGLLDLYE----FGSGTKWLVWAIELQNTQDELFLDREGG 530 (714)
Q Consensus 491 A~li~all~Lye----aTgd~~~L~~A~~L~~~~~~~F~D~~~G 530 (714)
++.+-++.+++. .++++.|.+.+..-.+.+.+... +..|
T Consensus 197 SY~~pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~~~~-~~tG 239 (396)
T 1wu4_A 197 SYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACH-PETG 239 (396)
T ss_dssp GGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSC-TTTC
T ss_pred hhccHHHHHHHHHhcccccChhHHHHHHHHHHHHHhccc-CCCC
Confidence 333457777755 56777899999888888766543 3344
No 392
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=31.87 E-value=24 Score=31.78 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=29.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.++|++|++. .++|+++=|++ .+|..+.|.-...+...+ +..|.|..-+++..|..+
T Consensus 6 Y~~~~C~~C~ka----------~~~L~~~gi~y~~~di~~~~~~~~el~~~l----~~~~~~~~~l~n~~~~~~ 65 (132)
T 1z3e_A 6 YTSPSCTSCRKA----------RAWLEEHEIPFVERNIFSEPLSIDEIKQIL----RMTEDGTDEIISTRSKVF 65 (132)
T ss_dssp EECTTCHHHHHH----------HHHHHHTTCCEEEEETTTSCCCHHHHHHHH----HTCSSCGGGTBCTTSHHH
T ss_pred EeCCCChHHHHH----------HHHHHHcCCceEEEEccCCCccHHHHHHHH----HHcCCCHHHhhcCCchHH
Confidence 357999999983 34555442332 345544433222222222 223445455666665443
No 393
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=30.87 E-value=3e+02 Score=30.52 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CC-----------------------
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-TH----------------------- 470 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~-~G----------------------- 470 (714)
|..|.++...++.++|.. .-.+.|.++.+.+++++.+...+++ .|
T Consensus 183 a~~L~la~~Yy~~TgD~~-----------~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~p 251 (489)
T 2p0v_A 183 CYPIRLAYHYWKTTGDAS-----------VFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNP 251 (489)
T ss_dssp HHHHHHHHHHHHHHCCCT-----------TSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCch-----------hhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCc
Confidence 888998889999998721 1126888999999999988665532 11
Q ss_pred ----eEEEE-ecCC-CCC-CCCCcchHHHHHHHHHHHHHH---cC-Ch----HHHHHHHHHHHHHHHhccccc
Q 005115 471 ----RLQHS-FRNG-PSK-APGFLDDYAFLISGLLDLYEF---GS-GT----KWLVWAIELQNTQDELFLDRE 528 (714)
Q Consensus 471 ----~l~~~-~~~g-~~~-~~~~l~DyA~li~all~Lyea---Tg-d~----~~L~~A~~L~~~~~~~F~D~~ 528 (714)
+|.++ +|.. .+. ..=+....+++..+|-.+.++ -+ +. +|.+.|.++-+.+.++.++.+
T Consensus 252 v~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~ 324 (489)
T 2p0v_A 252 VKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNH 324 (489)
T ss_dssp CCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEE
T ss_pred cCCCCceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecC
Confidence 12111 1100 000 111223456666666555543 33 43 477777888888888888764
No 394
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=30.07 E-value=1.4e+02 Score=33.16 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=65.5
Q ss_pred CCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhh----cc-cCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 005115 402 RPHLDDKVIVSWNGLVISSFARASKILKSEAESA----MF-NFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 476 (714)
Q Consensus 402 ~P~~DdKilt~WNal~I~aLa~a~~~~~d~~~~~----~~-~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~ 476 (714)
+|-+|-. |+.|.++....+.+.+..... .| +.++. ....-|-..-++.++|+.++...++.| ++..
T Consensus 141 ~~Q~D~~------g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~v~~~w~~pd~d-lWEe- 211 (492)
T 2fba_A 141 RPQNDGP------ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFS-STEDIYKNIIKPDLEYVIGYWDSTGFD-LWEE- 211 (492)
T ss_dssp CCBTTHH------HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCS-SHHHHHHHTHHHHHHHHHHHTTSCEEC-TTSC-
T ss_pred Cccccch------hHHHHHHHHHHHHhhccccchhhhhhhcccccc-ccHHHHHHHHHHHHHHHHHhcCCCCCC-CcCc-
Confidence 4677776 898888887666554311000 00 00000 001233468889999998876543222 2110
Q ss_pred cCCCCCCCCCcchHHHHHHHH---HHHHHHcCC----hHHHHHHHHHHHHHHHh---cccccCCcc
Q 005115 477 RNGPSKAPGFLDDYAFLISGL---LDLYEFGSG----TKWLVWAIELQNTQDEL---FLDREGGGY 532 (714)
Q Consensus 477 ~~g~~~~~~~l~DyA~li~al---l~LyeaTgd----~~~L~~A~~L~~~~~~~---F~D~~~Ggf 532 (714)
+.| -+..--+....|| +.+.+..|+ ..|.+.|.++.+.++++ ||+++.|.|
T Consensus 212 r~g-----~~~~T~~~~~~AL~~aa~lA~~~g~~~~a~~w~~~ad~i~~~I~~~~~~~w~~~~~~f 272 (492)
T 2fba_A 212 NQG-----RHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHI 272 (492)
T ss_dssp CEE-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSTTTCCEETTTTEE
T ss_pred cCC-----CChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Confidence 111 2333445555555 445666666 46888888999999988 998755444
No 395
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=29.89 E-value=1.6e+02 Score=32.15 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-HhccccCCCeEEEEe--cCCCCCCCCC-----
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-RHLYDEQTHRLQHSF--RNGPSKAPGF----- 486 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~-~~l~d~~~G~l~~~~--~~g~~~~~~~----- 486 (714)
|+.+.|+.-|... |= .++.+.++..+++.+|+. +.+-. -.|-|+|-+ +.|++.....
T Consensus 58 Gf~L~a~~va~e~-G~-------------I~~~e~~~R~~~tL~~l~~~~~~r-~~G~fyhwyd~~Tg~~l~~~~~d~~v 122 (424)
T 4gl3_A 58 GFGVMAIIVGIER-GF-------------VTREQGAERMLKIVRFLSDKNTDS-YHGMWAHWMNGKTGKTIPFSRKDDGA 122 (424)
T ss_dssp HHHHHHHHHHHHT-TS-------------SCHHHHHHHHHHHHHHHHCTTSCC-BTTBCCSEEETTTCCEECSBTTBCSE
T ss_pred HHHHHHHHHHHHc-CC-------------CCHHHHHHHHHHHHHHHhhccccc-cCCccccceeCCCCCCCCCcCCCCcc
Confidence 7778887777651 10 112678899999999985 34422 357777754 2454433333
Q ss_pred -cchHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHH
Q 005115 487 -LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQD 521 (714)
Q Consensus 487 -l~DyA~li~all~LyeaTgd-----~~~L~~A~~L~~~~~ 521 (714)
+=|-|+++.+||.+-+.-.+ ++-.++|.+|++.++
T Consensus 123 StVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~~L~~~~d 163 (424)
T 4gl3_A 123 DIVESAFMFEGLLAAHQYFTKDNPTENRIRGIINNLWRQAE 163 (424)
T ss_dssp EHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHcCC
Confidence 23889999999999998765 345566666665554
No 396
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=29.87 E-value=4.8e+02 Score=28.61 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccCCccccCCCC---C--------------Ccccc
Q 005115 487 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---D--------------PSVLL 544 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~---~--------------~~li~ 544 (714)
+|--|+.+.-.-.+|+.|||. .|++....+.+.+.+.-.....+.|.+.... . -.++.
T Consensus 162 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 241 (463)
T 3p2c_A 162 IDSLCYPLRLAYHYWKTTGDASIFNEEWIQAITNVLKTFKEQQRKDGVGPYKFQRKTERALDTVSNDGLGAPVKPVGLIV 241 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTTCSSSSCSCCCBCCBSCGGGSCHHHHTCSCCCCSSCCB
T ss_pred hhhhhHHHHHHHHHHHhhCChhhhcHHHHHHHHHHHHHHHHHhccCCCCCceEeecCCCCCcccCCCCcCCCcCCCCcee
Confidence 456688999999999999854 6777777887777654322112334432110 0 11222
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhhh
Q 005115 545 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDMA 599 (714)
Q Consensus 545 r~k~~~D~a~P-----S~nsvaa~~LlrL~~lt~~~-~~~~y~e~A~~~l~~~~~~i~~~p 599 (714)
.---+.|.++- .+|..++..|-+++.+...- .+....++++++-..+...|.++.
T Consensus 242 S~FRPSDDa~~~~~~iPsN~~a~v~L~~aaei~~~l~~d~~la~~~~~lA~eIr~gI~k~g 302 (463)
T 3p2c_A 242 SSFRPSDDATTLQFLVPSNFFAVSSLRKAAEILEKVNKKTALSKECKDLAQEVETALKKYA 302 (463)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 22223455552 26888888888888776310 124455566555555555555543
No 397
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=29.80 E-value=64 Score=31.23 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=39.5
Q ss_pred CCCChhhHhhhhhhCCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCC--CcCceEEeCCCC
Q 005115 15 THFLIKCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGG--GWPLSVFLSPDL 82 (714)
Q Consensus 15 t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkvD~ee--~p~i~~~y~~~~q~~~g~~--g~P~~vfl~p~g 82 (714)
.+||.-|..+. +.| .+||+....++..+.+|.++ .+.+.+.| |.. ++|+.++.+..+
T Consensus 140 ~~~~~~~~~~~-~~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~f--------gl~~~~~P~~~i~~~~~ 200 (227)
T 4f9z_D 140 NKASPEYEENM-HRY--QKAAKLFQGKILFILVDSGMKENGKVISFF--------KLKESQLPALAIYQTLD 200 (227)
T ss_dssp CTTSTTHHHHH-HHH--HHHHHHTTTTCEEEEEETTSGGGHHHHHHT--------TCCGGGCSEEEEEESSS
T ss_pred cCCcchHHHHH-HHH--HHHHHHhhCCEEEEEeCCccHhHHHHHHHc--------CCCcccCCEEEEEECCC
Confidence 56888887655 344 34788777778888899864 33444444 654 899999998654
No 398
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=29.78 E-value=87 Score=33.08 Aligned_cols=77 Identities=6% Similarity=0.053 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005115 203 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 282 (714)
Q Consensus 203 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~ 282 (714)
+++.+.+...++.+.. +-+-+|||.-|-.+ .--.|..|..+..++.+-.....+ ..+.+++++||.+
T Consensus 87 ~~~~~~i~~g~~~ll~---~Q~~dGgf~~~~~~--------~~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQ---FRKADGSYAAWLSR--------DSSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCeeccCCC--------CCcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Confidence 4677788888888875 45678999633222 113467899999999987653322 4678899999987
Q ss_pred hccCCCCceee
Q 005115 283 DMIGPGGEIFS 293 (714)
Q Consensus 283 ~m~~p~Ggfys 293 (714)
.+.++|+|+.
T Consensus 154 -~Q~~dG~~~~ 163 (367)
T 1hzf_A 154 -QQQADGSFQD 163 (367)
T ss_dssp -GBCTTSCBCC
T ss_pred -hhccCCCccc
Confidence 5678999975
No 399
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=29.41 E-value=3.1e+02 Score=31.08 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=45.2
Q ss_pred cCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005115 224 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSA 294 (714)
Q Consensus 224 ~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~---Ay~~t-~d~~y~~~A~~~~~fl~~~m~~p~Ggfysa 294 (714)
.+-||+| |..=++.+---|-|.=.+|+|.|.+ +|... +-+..++.++-.++||++ |...++.||.-
T Consensus 48 Dl~GGwy----DAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g~~~d~ldeikwg~Dyllk-~~~~~~~~y~q 117 (605)
T 1tf4_A 48 DLTGGWY----DAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIK-AHPSPNVLYVQ 117 (605)
T ss_dssp CCCCSBC----CSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHH-TCSBTTBEEEE
T ss_pred cCCCcee----ECCCCCEeccchHHHHHHHHHHHHHhHHHHhhcCCcccHHHHHHHHHHHHHH-hccCCCeEEEE
Confidence 3667777 4433444445677777777777665 45443 348899999999999998 66555677763
No 400
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=29.40 E-value=36 Score=31.26 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=13.4
Q ss_pred cCCCCcCceEEeCCCCccccc
Q 005115 67 YGGGGWPLSVFLSPDLKPLMG 87 (714)
Q Consensus 67 ~g~~g~P~~vfl~p~g~p~~~ 87 (714)
.|+.|+|+.+| +|+.+..
T Consensus 146 ~gv~gTPtfiI---NGky~v~ 163 (184)
T 4dvc_A 146 SGLTGVPAVVV---NNRYLVQ 163 (184)
T ss_dssp HTCCSSSEEEE---TTTEEEC
T ss_pred cCCCcCCEEEE---CCEEeeC
Confidence 38999998877 7875533
No 401
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=29.31 E-value=60 Score=32.03 Aligned_cols=35 Identities=14% Similarity=-0.065 Sum_probs=24.2
Q ss_pred cCceEEeCCCCcccccccccCCCCCCCCccHHHHHHHHH
Q 005115 72 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 110 (714)
Q Consensus 72 ~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~i~ 110 (714)
.+.+++++|+|+.-+...|=.+. ...+-++|+.|.
T Consensus 143 ~R~tFiID~~G~Ir~~~v~~~~~----grn~dEiLr~l~ 177 (216)
T 3sbc_A 143 LRGLFIIDPKGVIRHITINDLPV----GRNVDEALRLVE 177 (216)
T ss_dssp CEEEEEECTTSBEEEEEEECTTB----CCCHHHHHHHHH
T ss_pred eeEEEEECCCCeEEEEEEcCCCC----CCCHHHHHHHHH
Confidence 47899999999987654442222 237888888664
No 402
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=28.65 E-value=43 Score=27.50 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 33 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 33 ~va~~ln~~Fv~vkvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
....-|-.-|+.|-+|.+| |++...-.....-....-|||+.+-|-=.|+|+
T Consensus 23 gL~~eLP~~y~LV~L~~de-PEvaa~AL~~A~eapn~EGwP~VYALFlqGr~l 74 (90)
T 2dbs_A 23 DLLRELPPTYRLVLLPLDE-PEVAAQALAWAMEAPNPEGWPSVYALFLQGRPI 74 (90)
T ss_dssp TCGGGSCSSCEEEEEETTC-HHHHHHHHHHHHSCCCSSSSCEEEEEEETTEEE
T ss_pred hHHHhCCCceEEEecCCCC-HHHHHHHHHHHHhCCCCCCChhHHHHHhCCcee
Confidence 3445567789999999998 788765544444444678999988776678876
No 403
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=28.60 E-value=2.7e+02 Score=29.29 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchH-H
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDY-A 491 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~~~g~~--~~~~~l~Dy-A 491 (714)
+..|.+|++++...++ +.|.+++.++.+||+..... +|++-..+.+... ..-.|-||- +
T Consensus 77 a~vl~~Larv~~~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpd~~~Yl~~IpFnDDvta 138 (332)
T 1gxm_A 77 ITEMVFLAEVYKSGGN----------------TKYRDAVRKAANFLVNSQYS--TGALPQFYPLKGGYSDHATFNDNGMA 138 (332)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHCCT--TSCCBSEESCCSGGGGSEECGGGHHH
T ss_pred HHHHHHHHHHhccccc----------------hHHHHHHHHHHHHHHhccCC--CCCccccCCCcccccccCCcchHHHH
Confidence 8899999999987665 78999999999999988775 5666554443221 112344444 4
Q ss_pred HHHHHHHHHHH
Q 005115 492 FLISGLLDLYE 502 (714)
Q Consensus 492 ~li~all~Lye 502 (714)
.+++.|..+.+
T Consensus 139 rvLelL~~~~~ 149 (332)
T 1gxm_A 139 YALTVLDFAAN 149 (332)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 56666666643
No 404
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=28.46 E-value=58 Score=38.23 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=36.4
Q ss_pred hHHHHH---HHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCC
Q 005115 489 DYAFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 536 (714)
Q Consensus 489 DyA~li---~all~LyeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~ 536 (714)
-.|++. ..+.++.+..|++ +|.+.|.++.+.+.++|||++.|.||+..
T Consensus 554 lnA~ly~al~~lA~lA~~LG~~e~A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~~ 608 (761)
T 3c68_A 554 QASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVR 608 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCccCCEEEEEe
Confidence 345544 4555567777875 68999999999999999999888887643
No 405
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.15 E-value=35 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=26.8
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++|+.+|++...+...+..++++|...
T Consensus 27 s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 27 TLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999753
No 406
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=28.13 E-value=38 Score=30.09 Aligned_cols=60 Identities=10% Similarity=-0.043 Sum_probs=34.5
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCc-CceEEeCCCCcccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGW-PLSVFLSPDLKPLM 86 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~-P~~vfl~p~g~p~~ 86 (714)
.+.++|.+|++ +.++|+++=|.+ .+|..+.|.-.......+ +..|| |..-+++..|..+-
T Consensus 10 Y~~p~C~~c~k----------a~~~L~~~gi~~~~~di~~~~~~~~eL~~~l----~~~g~~~~~~l~n~~~~~~k 71 (121)
T 3rdw_A 10 YHNPRCSKSRE----------TLALVEQQGITPQVVLYLETPPSVDKLKELL----QQLGFSDARQLMRTKEDLYK 71 (121)
T ss_dssp ECCTTCHHHHH----------HHHHHHTTTCCCEEECTTTSCCCHHHHHHHH----HHTTCSSGGGGBCTTSHHHH
T ss_pred EECCCCHHHHH----------HHHHHHHcCCCcEEEeeccCCCcHHHHHHHH----HhcCCcCHHHHhcCCChhhh
Confidence 46899999998 345666543332 355544443222222222 23478 87667887776553
No 407
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=28.13 E-value=33 Score=30.50 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.++|.+|++- .++|+++=|.+ .+|..+.|.-.......++ ..|.|..-+++..|..+
T Consensus 8 Y~~~~C~~c~ka----------~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~----~~g~~~~~l~n~~~~~~ 67 (120)
T 3fz4_A 8 YEYPKCSTCRRA----------KAELDDLAWDYDAIDIKKNPPAASLIRNWLE----NSGLELKKFFNTSGQSY 67 (120)
T ss_dssp EECSSCHHHHHH----------HHHHHHHTCCEEEEETTTSCCCHHHHHHHHH----HSCCCGGGGBCTTSHHH
T ss_pred EeCCCChHHHHH----------HHHHHHcCCceEEEEeccCchhHHHHHHHHH----HcCCCHHHHhCCCCcch
Confidence 468999999984 45666544443 3555544432222222222 34677666777776544
No 408
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=27.52 E-value=4.3e+02 Score=28.70 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccCCccccCCCC---C--------------Ccccc
Q 005115 487 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---D--------------PSVLL 544 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~~---~--------------~~li~ 544 (714)
+|--|+.+.-.-.+|+.|||. .|++....+.+.+.+.-.....+.|.+.... . -.++.
T Consensus 134 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 213 (427)
T 3qt9_A 134 IDSLCYPVRLIHKYWKESGDETFFNYDIKKAFNMIIDLWRVEQYHREKSDYSFQRLNCSVTDTLSHEGLGTPVTYTGMTW 213 (427)
T ss_dssp THHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHGGGHHHHCCCCCBCSSSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCccccCCCCCCCcCCCCcee
Confidence 456689999999999999865 5777777777776554311122334332110 0 11222
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhhh
Q 005115 545 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDMA 599 (714)
Q Consensus 545 r~k~~~D~a~P-----S~nsvaa~~LlrL~~lt~~~-~~~~y~e~A~~~l~~~~~~i~~~p 599 (714)
.---+.|.++- .+|..++..|-+++.+...- .+....++++++-..+...|.++.
T Consensus 214 S~FRPSDDa~~~~~~iPsN~~a~vaL~~~aei~~~l~~d~~La~~~~~la~eIr~aI~k~g 274 (427)
T 3qt9_A 214 SGFRPSDDACEYGYLIPANMFAVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKHG 274 (427)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 12223455552 26888888888888776321 124456666666666666565543
No 409
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=27.23 E-value=6.5e+02 Score=27.54 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 476 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~~ 476 (714)
+++..||.++.++...- |.+...|.+.|.++.++| +++|+ |.|...+
T Consensus 189 ~~~~~AL~~aa~lA~~~-----------g~~~~~w~~~ad~I~~~i-~~~w~---g~f~~~~ 235 (472)
T 1gai_A 189 AVQHRALVEGSAFATAV-----------GSSCSWCDSQAPQILCYL-QSFWT---GSYILAN 235 (472)
T ss_dssp HHHHHHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHHH-GGGBC---SSSBCSE
T ss_pred HHHHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHH-HhhcC---CceEEee
Confidence 55666777776553320 111278999999999999 89996 5555444
No 410
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=27.17 E-value=32 Score=30.47 Aligned_cols=59 Identities=12% Similarity=-0.011 Sum_probs=31.9
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHHHHHhcCCCCcCceEEeCCCCccc
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 85 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~v-kvD~ee~p~i~~~y~~~~q~~~g~~g~P~~vfl~p~g~p~ 85 (714)
.+.++|.+|++- .++|+++=|.+ .+|..+.|.-.......++ ..|.|..-+++..|..+
T Consensus 5 Y~~~~C~~c~ka----------~~~L~~~gi~~~~~di~~~~~~~~el~~~l~----~~~~~~~~l~n~~~~~~ 64 (120)
T 3l78_A 5 FLSPSCTSCRKA----------RAWLNRHDVVFQEHNIMTSPLSRDELLKILS----YTENGTEDIISTRSKVF 64 (120)
T ss_dssp EECSSCHHHHHH----------HHHHHHTTCCEEEEETTTSCCCHHHHHHHHH----HCSSTHHHHBCTTCHHH
T ss_pred EeCCCCHHHHHH----------HHHHHHcCCCeEEEecccCCCcHHHHHHHHh----hcCCCHHHhhcCCcHHH
Confidence 357899999983 45565443333 3555444332222222222 23556666777776554
No 411
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=27.01 E-value=38 Score=31.46 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=9.4
Q ss_pred CCCCCChhhHh
Q 005115 13 RRTHFLIKCHV 23 (714)
Q Consensus 13 ~~t~wC~wC~~ 23 (714)
.-++||..|..
T Consensus 51 ~~a~wcp~C~~ 61 (171)
T 2pwj_A 51 LPGAYTGVCSS 61 (171)
T ss_dssp CSCTTCTTHHH
T ss_pred ecCCCCCCCCH
Confidence 46899999986
No 412
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.82 E-value=58 Score=25.60 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLF 394 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 394 (714)
+..++|+.+|++...+...+..++++|.
T Consensus 32 s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 32 TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999997
No 413
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=26.18 E-value=1.7e+02 Score=25.50 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhc----HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhccc
Q 005115 102 FKTILRKVKDAWDKK----RDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYD 165 (714)
Q Consensus 102 f~~~L~~i~~~w~~~----~~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D 165 (714)
|.++..++-..|..+ ||.|-.-|++|+..|..-.....++.+.|.+++.+-..++-++....+|
T Consensus 21 fA~~VPN~ikKYe~e~~igrDniK~CArdiVk~L~~KElKk~~s~~pp~ELs~~Kr~KIK~F~k~YMd 88 (104)
T 2c5z_A 21 FASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTTKELKKDSSRAPPDDLTKGKRHKVKEFINSYMD 88 (104)
T ss_dssp HHHHHHHHHHTSTTTTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHHHHHHHHHH
Confidence 666777777788765 9999999999999996654433233333556666665555444444333
No 414
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=26.10 E-value=4.2e+02 Score=28.74 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccCCccccCCC---CC--------------Ccccc
Q 005115 487 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTG---ED--------------PSVLL 544 (714)
Q Consensus 487 l~DyA~li~all~LyeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~Ggff~t~~---~~--------------~~li~ 544 (714)
+|--|+.+.-.-.+|+.|||. .|++....+.+.+.+.- +.+.+.|.+... .. -.++.
T Consensus 133 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~eq-~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 211 (426)
T 3qry_B 133 VDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQ-DHKNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTW 211 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTT-SGGGCCCCCEECCSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHh-ccCCCCceeeecCCCCCccccCCCCCCCcCCCCcee
Confidence 456688999999999999865 67777777777776643 223334443211 00 11222
Q ss_pred ccccCCCCCCC-----ChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHhhh
Q 005115 545 RVKEDHDGAEP-----SGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVFETRLKDMA 599 (714)
Q Consensus 545 r~k~~~D~a~P-----S~nsvaa~~LlrL~~lt~---~~~~~~y~e~A~~~l~~~~~~i~~~p 599 (714)
.---+.|.++- .+|..++..|-+++.+.. ...+....++++++-..+...|.++.
T Consensus 212 S~FRPSDDa~~~~~~iPsN~~~~v~L~~~aei~~~~~v~~d~~la~~~~~la~eIr~~I~k~g 274 (426)
T 3qry_B 212 SAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYA 274 (426)
T ss_dssp CSBCTTSSBCSSSEEHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 12223455552 268888889988888764 11124455556555555555555543
No 415
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=25.70 E-value=62 Score=30.32 Aligned_cols=36 Identities=8% Similarity=-0.209 Sum_probs=21.8
Q ss_pred CcCceEEeCCCCcccccccccCCCCCCCCccHHHHHHH
Q 005115 71 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRK 108 (714)
Q Consensus 71 g~P~~vfl~p~g~p~~~~ty~p~~~~~~~~~f~~~L~~ 108 (714)
..|.+++++ ||++.+...+-.+. .........+|+.
T Consensus 137 ~~r~tfvID-dG~I~~~~v~~~~~-g~~~~~~~~vl~~ 172 (173)
T 3mng_A 137 LKRFSMVVQ-DGIVKALNVEPDGT-GLTCSLAPNIISQ 172 (173)
T ss_dssp BCCEEEEEE-TTEEEEEEECTTSS-CSSTTSHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEEeCCCC-CcchHHHHHHHHh
Confidence 569999999 99988664322211 1234456666653
No 416
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=25.53 E-value=34 Score=35.12 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=16.1
Q ss_pred CCCCChhhHhhhhhhCCCHHHHHHHhc
Q 005115 14 RTHFLIKCHVMEVESFEDEGVAKLLND 40 (714)
Q Consensus 14 ~t~wC~wC~~M~~e~f~~~~va~~ln~ 40 (714)
.=+.|+|||++..+ +.+.+|+
T Consensus 155 tDp~CPYCkkl~~~------l~~~l~~ 175 (273)
T 3tdg_A 155 SDPMCPHCQKELTK------LRDHLKE 175 (273)
T ss_dssp ECTTCHHHHHHHHT------HHHHHHH
T ss_pred ECcCChhHHHHHHH------HHHHhhC
Confidence 45789999999866 6656764
No 417
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=25.52 E-value=40 Score=30.96 Aligned_cols=16 Identities=19% Similarity=-0.145 Sum_probs=13.0
Q ss_pred CCCCCChhhHhhhhhh
Q 005115 13 RRTHFLIKCHVMEVES 28 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~ 28 (714)
....||+||+.|+...
T Consensus 34 f~D~~Cp~C~~~~~~~ 49 (175)
T 1z6m_A 34 FINVRCPYCRKWFEES 49 (175)
T ss_dssp EECTTCHHHHHHHHHH
T ss_pred EECCCCcchHHHHHHH
Confidence 3567999999999764
No 418
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.31 E-value=72 Score=23.80 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=25.8
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFD 395 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 395 (714)
+..++|+.+|+++..+...+..++++|..
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 56799999999999999999999999854
No 419
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=25.08 E-value=1.6e+02 Score=31.53 Aligned_cols=124 Identities=10% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccc-c-------cCCCCCCCCCC------------------CChhHHHHHHHhhhhhcccCCCCCCHHHH
Q 005115 153 LRLCAEQLSKSYD-S-------RFGGFGSAPKF------------------PRPVEIQMMLYHSKKLEDTGKSGEASEGQ 206 (714)
Q Consensus 153 ~~~~~~~l~~~~D-~-------~~GGfg~apKF------------------P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~ 206 (714)
.+.+++.+.+..- | ..|||++.|+. |+...-..-+.....-++.-.....+++.
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~ 148 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACL 148 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHH
Q ss_pred HHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccC
Q 005115 207 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIG 286 (714)
Q Consensus 207 ~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~ll~~y~~Ay~~t~d~~y~~~A~~~~~fl~~~m~~ 286 (714)
+.+...=+. +|+|+. +..|-..+ -.-.+.=+.+..+.+. .=...++++++||++ .+.
T Consensus 149 ~fL~~~Q~~----------DGSf~g---~~~wGe~D--------irftY~Al~~l~llg~-~~~~~v~ka~~fL~s-cQn 205 (377)
T 1n4q_B 149 AGLRALQLE----------DGSFCA---VPEGSEND--------MRFVYCASCICYMLNN-WSGMDMKKAISYIRR-SMS 205 (377)
T ss_dssp HHHHHHBCT----------TSCBCS---STTCCCCB--------HHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHH-TBC
T ss_pred HHHHHhcCC----------CCCeee---ccCCCcch--------hHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH-hcC
Q ss_pred CCCceeeeccCCC
Q 005115 287 PGGEIFSAEDADS 299 (714)
Q Consensus 287 p~Ggfysa~DADs 299 (714)
++|||-.+....|
T Consensus 206 ~DGGfGe~p~~ES 218 (377)
T 1n4q_B 206 YDNGLAQGAGLES 218 (377)
T ss_dssp TTSSBBSSTTSCB
T ss_pred CCCCCCCCCCCCC
No 420
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=23.88 E-value=5.3e+02 Score=25.41 Aligned_cols=121 Identities=10% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCChhHH-HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 005115 152 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 230 (714)
Q Consensus 152 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~ 230 (714)
.+++.+..+.. +-...|||+.-+.=|....+ .+.+.......... ..++ +++.++++-+.. -.-+-+|+|.
T Consensus 39 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~---~~i~~a~~~L~~--~~Q~~dG~f~ 110 (277)
T 1qqf_A 39 LIKKGYTQQLA-FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI--AIDS---QVLCGAVKWLIL--EKQKPDGVFQ 110 (277)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCH---HHHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC--CCCH---HHHHHHHHHHHH--hccCCCCCcc
Confidence 34555555654 45568998765544432222 12222221111101 1123 344455554431 0122356665
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhcc
Q 005115 231 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMI 285 (714)
Q Consensus 231 RYsvD~~W~vPHFE----------KMLyDNA~ll~~y~~Ay~~t--~d~~y~~~A~~~~~fl~~~m~ 285 (714)
..|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+...
T Consensus 111 -----~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 172 (277)
T 1qqf_A 111 -----EDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYL 172 (277)
T ss_dssp -----CSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHT
T ss_pred -----CCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhc
Confidence 356665532 12556888899888886553 334566788999999988653
No 421
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=23.54 E-value=1.1e+03 Score=29.00 Aligned_cols=207 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceeeeccCCCccccCcccccCCceEeechHHHHHHhhhh
Q 005115 252 QLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 328 (714)
Q Consensus 252 ~ll~~y~~Ay~~t~---d~~y~~~A~~~~~fl~~~m~~p~Ggfysa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~ 328 (714)
.++.-|+++-.... ...-.+..+..++.++. |++++|||-+-.+.++. .|--.=+-+.|..
T Consensus 850 ~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~-~q~~dGgf~~f~~~~~s--------------~~lTa~v~~~l~~- 913 (1325)
T 2pn5_A 850 ILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMR-YRQTDGSFGLWETTNGS--------------VFLTAFVGTSMQT- 913 (1325)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGG-GBCTTSCBCSSSSSCCC--------------HHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeccCCCCCC--------------eeehHHHHHHHHH-
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceecccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 005115 329 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 408 (714)
Q Consensus 329 ~~~~~~~~~v~~~Gn~~~~~~~d~~~~~eg~niL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~DdK 408 (714)
|..++...+ ...++++.+.|......-..-.-+.+
T Consensus 914 -------------------------------------------a~~~~~~v~--~~~l~~a~~~L~~~q~~dG~f~~~~~ 948 (1325)
T 2pn5_A 914 -------------------------------------------AVKYISDID--AAMVEKALDWLASKQHFSGRFDKAGA 948 (1325)
T ss_dssp -------------------------------------------HTTTCSCSC--HHHHHHHHHHHHHTCCTTSCCCCCSC
T ss_pred -------------------------------------------HHhhEEcCC--HHHHHHHHHHHHhhhccCCCcccccc
Q ss_pred hh-----------hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-------
Q 005115 409 VI-----------VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH------- 470 (714)
Q Consensus 409 il-----------t~WNal~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G------- 470 (714)
++ .+..++++.||++++... ..+.....++.+||.++.-...++
T Consensus 949 ~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~------------------~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~a 1010 (1325)
T 2pn5_A 949 EYHKEMQGGLRNGVALTSYVLMALLENDIAK------------------AKHAEVIQKGMTYLSNQFGSINNAYDLSIAT 1010 (1325)
T ss_dssp CSCHHHHCCSSTTHHHHHHHHHHHHTCHHHH------------------HHTHHHHHHHHHHHHHHGGGCCCHHHHHHHH
T ss_pred ccChhhcCcccCCccccHHHHHHHhhCcccc------------------cccHHHHHHHHHHHHHhhcccCCHHHHHHHH
Q ss_pred -----------------------------eEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005115 471 -----------------------------RLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 521 (714)
Q Consensus 471 -----------------------------~l~~~~~~g~~~~~~~l~DyA~li~all~LyeaTgd~~~L~~A~~L~~~~~ 521 (714)
..++ ......++-|+++.+|+. ....+.+.++.+.+.
T Consensus 1011 yaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w-------~~~s~ve~tA~aLlall~-------~~~~~~~~~~v~wL~ 1076 (1325)
T 2pn5_A 1011 YAMMLNGHTMKEEALNKLIDMSFIDADKNERFW-------NTTNPIETTAYALLSFVM-------AEKYTDGIPVMNWLV 1076 (1325)
T ss_dssp HHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC-------CSSSHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHhhhhhccCCCcccC-------CCCCchHHHHHHHHHHhh-------hccchhhHHHHHHHH
Q ss_pred HhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 005115 522 ELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA 573 (714)
Q Consensus 522 ~~F~D~~~Ggff~t~~~~~~li~r~k~~~D~a~PS~nsvaa~~LlrL~~lt~ 573 (714)
+.-.. +|+|.+|. .++.++.+|.+.+..+.
T Consensus 1077 ~q~~~--~g~w~sTq--------------------~T~~aL~AL~~y~~~~~ 1106 (1325)
T 2pn5_A 1077 NQRYV--TGSFPSTQ--------------------DTFVGLKALTKMAEKIS 1106 (1325)
T ss_dssp TTCCT--TSSCSSHH--------------------HHHHHHHHHHHHHHHHS
T ss_pred hccCC--CCCccchH--------------------HHHHHHHHHHHHHHHcC
No 422
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.12 E-value=68 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=26.9
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++|+.+|++...+...+..++++|.+.
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998764
No 423
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=22.78 E-value=3.2e+02 Score=30.58 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=68.4
Q ss_pred hchHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-e--cCCCCCC-
Q 005115 411 VSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-F--RNGPSKA- 483 (714)
Q Consensus 411 t~WNal~I~a---La~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~-~--~~g~~~~- 483 (714)
-.|=||-.|. +++.|-++|| ++....-.+-+.+++.+..-..+|.+..- . =.|+|..
T Consensus 409 N~WfG~QaWsmeRvAeyYY~tGd----------------~~Ak~ildKWv~W~~~~~~~~~~G~f~iPs~L~WsGqPdtW 472 (629)
T 1g9g_A 409 NTWFGMQVWSMQRVAELYYKTGD----------------ARAKKLLDKWAKWINGEIKFNADGTFQIPSTIDWEGQPDTW 472 (629)
T ss_dssp TSBTHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEEEESCCCCC
T ss_pred CCccccchhhHHHHHHHHHhccc----------------HHHHHHHHHHHHHHHhceEECCCCCEecCCcccccCCCCcc
Confidence 4577887776 4556667887 66777777788888887544345544321 1 1233311
Q ss_pred ------------C----CCcchH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005115 484 ------------P----GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 528 (714)
Q Consensus 484 ------------~----~~l~Dy---A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~ 528 (714)
. .+-.|- +.++.+|+-....+||....+.|++|++.|...+.|..
T Consensus 473 ~~~~s~~gN~~lhv~V~~~g~DvGva~s~A~tL~yYAa~sgd~~ak~~Ak~LLD~~W~~~~D~~ 536 (629)
T 1g9g_A 473 NPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536 (629)
T ss_dssp CTTTCCCCCTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETT
T ss_pred ccCCCCCCCCCeEEEEeecCcchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 1 111233 56788888888899999999999999999988877753
No 424
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=22.45 E-value=1.1e+02 Score=35.92 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred hHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 005115 413 WNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 475 (714)
Q Consensus 413 WNal~I~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~~~l~d~~~G~l~~~ 475 (714)
-|+++.. .+++.++++|+... ..+|.+.|.++.+.+.+++|+++.|.++..
T Consensus 554 lnA~ly~al~~lA~lA~~LG~~e~------------A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 554 QASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 4666554 56667777776311 157999999999999999999877766533
No 425
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=22.16 E-value=57 Score=30.72 Aligned_cols=32 Identities=9% Similarity=-0.027 Sum_probs=19.7
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhcccEEEEE
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLNDWFVSIKV 47 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~~Fv~vkv 47 (714)
...-||++|+.|+. ++ +++.+.++=.|+.+.|
T Consensus 29 f~d~~Cp~C~~~~~-~~--~~~~~~~~v~~~~~p~ 60 (185)
T 3feu_A 29 VFALSCGHCRNMEN-FL--PVISQEAGTDIGKMHI 60 (185)
T ss_dssp EECTTCHHHHHHGG-GH--HHHHHHHTSCCEEEEC
T ss_pred EECCCChhHHHhhH-HH--HHHHHHhCCeEEEEec
Confidence 45679999999984 33 4555555334444433
No 426
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=22.01 E-value=20 Score=24.30 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=6.4
Q ss_pred ccCCCCCC
Q 005115 11 KTRRTHFL 18 (714)
Q Consensus 11 ~~~~t~wC 18 (714)
..|..|||
T Consensus 13 npregdwc 20 (36)
T 4b2u_A 13 NPREGDWC 20 (36)
T ss_dssp CGGGCCSS
T ss_pred CCCccCee
Confidence 56888997
No 427
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=21.79 E-value=8.9e+02 Score=27.24 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-----HhccccCCCeEE--------EEecCCCC
Q 005115 415 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-----RHLYDEQTHRLQ--------HSFRNGPS 481 (714)
Q Consensus 415 al~I~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~yl~~A~~~~~~l~-----~~l~d~~~G~l~--------~~~~~g~~ 481 (714)
++++.||...+...|+ .+.|.+..+||. +.++.+ +|.+. ....+|.+
T Consensus 56 a~t~~aL~~~~~~~G~-------------------~~~a~~~~~~l~~~~~lQ~~y~~-~G~~~~~~~l~E~~~~ldG~~ 115 (599)
T 2vn4_A 56 ALVFKNLIDRFTETYD-------------------AGLQRRIEQYITAQVTLQGLSNP-SGSLADGSGLGEPKFELTLKP 115 (599)
T ss_dssp HHHHHHHHHHHHHSBC-------------------HHHHHHHHHHHHHHHHHHHCCBT-TBCSTTSGGGGCCEECTTSCB
T ss_pred HHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHhcccceeeeeCC-CCCcccccCcCceEEecCCcc
Confidence 7888888866644554 345566666663 455554 34331 11235543
Q ss_pred C----CCCCcch-----HHHHHHHHHHHHHHcCChHHH-----HHHHHHHHHHHHhcccccCCccccCCCCCCccccccc
Q 005115 482 K----APGFLDD-----YAFLISGLLDLYEFGSGTKWL-----VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 547 (714)
Q Consensus 482 ~----~~~~l~D-----yA~li~all~LyeaTgd~~~L-----~~A~~L~~~~~~~F~D~~~Ggff~t~~~~~~li~r~k 547 (714)
. .....|. ++.++.+.. |..+++..++ ...+.+++++.++ |+..+=+.++..
T Consensus 116 ~~~~w~~~Q~D~~glr~~~~~~~~~~--~~~~g~~~~~~~~~w~~v~~~l~~v~~~-w~~~d~dlWEer----------- 181 (599)
T 2vn4_A 116 FTGNWGRPQRDGPALRAIALIGYSKW--LINNNYQSTVSNVIWPIVRNDLNYVAQY-WNQTGFDLWEEV----------- 181 (599)
T ss_dssp CCSCCSCCCTHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHTHHHHHHHHHHHHHH-TTSCEECTTSCC-----------
T ss_pred ccCcCCCeeccccchhHHHHHHHHHH--HHHhCCcccccHHHHHHHHHHHHHHHHh-CCCCCCCeeeec-----------
Confidence 1 1234455 345544443 6678886543 4455666666544 443221222211
Q ss_pred cCCCCCCCChHHHHHHHH---HHHHHHhCCCCchHHHHHHHHHHHHH
Q 005115 548 EDHDGAEPSGNSVSVINL---VRLASIVAGSKSDYYRQNAEHSLAVF 591 (714)
Q Consensus 548 ~~~D~a~PS~nsvaa~~L---lrL~~lt~~~~~~~y~e~A~~~l~~~ 591 (714)
.+..+...++...+| .+|++..|.. .+.|++.|+++...+
T Consensus 182 ---~g~~~~T~~~~~~aL~~aa~lA~~~g~~-~~~w~~~ad~i~~~i 224 (599)
T 2vn4_A 182 ---NGSSFFTVANQHRALVEGATLAATLGQS-GSAYSSVAPQVLCFL 224 (599)
T ss_dssp ---EEEEHHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 122344444433444 5556666654 467888887777655
No 428
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.51 E-value=93 Score=28.21 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=29.0
Q ss_pred CCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 005115 366 NDSSASASKLGMPLEKYLNILGECRRKLFDVRS 398 (714)
Q Consensus 366 ~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~ 398 (714)
.+..++|+.+|+++..+...|..+|++|.+.=.
T Consensus 110 ~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 110 FSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999987543
No 429
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=21.15 E-value=6.4e+02 Score=25.34 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCChhHH-HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 005115 152 ALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI-QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 230 (714)
Q Consensus 152 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~ 230 (714)
.+++.+..+.. +-...|||+.-++=|....+ .+.+.......... ..++ +++.++++-+.. -.-+-+|.|.
T Consensus 55 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~---~~i~~a~~~L~~--~~Q~~dGsf~ 126 (310)
T 2wy7_A 55 LIKKGYTQQLA-FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI--AIDS---QVLCGAVKWLIL--EKQKPDGVFQ 126 (310)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCH---HHHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC--CCCH---HHHHHHHHHHHH--hhcCCCCccc
Confidence 34555555654 45568999865553332221 12222221111101 1123 344555555431 0122346665
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhcc
Q 005115 231 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDMI 285 (714)
Q Consensus 231 RYsvD~~W~vPHFE----------KMLyDNA~ll~~y~~Ay~~t--~d~~y~~~A~~~~~fl~~~m~ 285 (714)
..|.+-|-+ .-++-.|..+.++.++.... +-+.....++++++||.+...
T Consensus 127 -----~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 188 (310)
T 2wy7_A 127 -----EDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYM 188 (310)
T ss_dssp -----CSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGG
T ss_pred -----cCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhh
Confidence 356665542 22556889999998886653 334566788999999988643
No 430
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.71 E-value=80 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=27.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005115 367 DSSASASKLGMPLEKYLNILGECRRKLFDV 396 (714)
Q Consensus 367 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 396 (714)
+..++|+.+|+++..+...+..++++|...
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999763
No 431
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=20.06 E-value=73 Score=29.49 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=23.0
Q ss_pred CCCCCChhhHhhhhhhCCCHHHHHHHhc--ccEEEEEcCC
Q 005115 13 RRTHFLIKCHVMEVESFEDEGVAKLLND--WFVSIKVDRE 50 (714)
Q Consensus 13 ~~t~wC~wC~~M~~e~f~~~~va~~ln~--~Fv~vkvD~e 50 (714)
.+..+|+||..++...+ +++++.... .|+++.++..
T Consensus 24 f~d~~CP~C~~~~~~l~--~~l~~~~~~~v~~~~~~l~~~ 61 (195)
T 3c7m_A 24 VFSYACPFCYKYDKAVT--GPVSEKVKDIVAFTPFHLETK 61 (195)
T ss_dssp EECTTCHHHHHHHHHTH--HHHHHHTTTTCEEEEEECTTS
T ss_pred EEeCcCcchhhCcHHHH--HHHHHhCCCceEEEEEecCcc
Confidence 45689999999987642 455554432 5666666653
No 432
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=20.04 E-value=92 Score=33.48 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=38.4
Q ss_pred EEEEecCCCCCCCCCcchH------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005115 472 LQHSFRNGPSKAPGFLDDY------AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 528 (714)
Q Consensus 472 l~~~~~~g~~~~~~~l~Dy------A~li~all~LyeaTgd~~~L~~A~~L~~~~~~~F~D~~ 528 (714)
+....+||+........|. +..+..|.-.|.+|||++|.++|.++++.- |.|++
T Consensus 80 ~Pyi~rDG~~nP~~~~~d~~~l~~~~~a~~~LALAW~~TGd~~YA~kA~~iL~aW---f~~~~ 139 (382)
T 3nnb_A 80 LPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVW---FLDAK 139 (382)
T ss_dssp CSCEECTTCCCGGGGGSSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HTCTT
T ss_pred CCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HCCCc
Confidence 4444567765444333343 667888999999999999999999888765 55543
Done!