Query 005116
Match_columns 714
No_of_seqs 414 out of 1871
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 18:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246 Kinesin-like protein [ 100.0 4E-102 8E-107 845.0 37.2 601 35-710 34-673 (676)
2 KOG0243 Kinesin-like protein [ 100.0 2.3E-81 4.9E-86 726.6 36.2 449 193-710 47-520 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 4E-81 8.7E-86 699.0 25.0 335 193-532 3-349 (574)
4 KOG0245 Kinesin-like protein [ 100.0 1.1E-79 2.5E-84 700.1 22.3 334 194-534 3-363 (1221)
5 cd01370 KISc_KIP3_like Kinesin 100.0 1.2E-77 2.5E-82 649.2 34.4 323 196-519 1-338 (338)
6 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-76 2.8E-81 637.1 34.2 315 195-517 1-322 (322)
7 PLN03188 kinesin-12 family pro 100.0 4.3E-76 9.3E-81 688.1 38.5 324 189-528 92-443 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 9.5E-76 2.1E-80 634.0 34.2 313 195-519 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.8E-75 3.9E-80 633.7 35.3 316 195-517 1-345 (345)
10 KOG0240 Kinesin (SMY1 subfamil 100.0 1.5E-76 3.2E-81 647.3 26.3 326 193-531 5-343 (607)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6E-74 1.3E-78 624.2 36.8 328 195-525 1-355 (356)
12 KOG0242 Kinesin-like protein [ 100.0 5.3E-75 1.1E-79 670.7 24.7 325 195-527 6-339 (675)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.4E-72 3.1E-77 608.3 36.1 319 195-519 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.5E-72 5.4E-77 610.5 36.5 325 195-527 2-351 (352)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 4.1E-72 8.8E-77 601.8 33.8 311 196-519 1-321 (321)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.5E-72 1.4E-76 601.0 35.2 312 195-519 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 2.5E-71 5.4E-76 595.4 34.5 306 196-517 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 3E-71 6.5E-76 598.3 34.2 315 196-517 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3.9E-71 8.4E-76 598.5 34.4 312 196-520 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 1.3E-71 2.7E-76 623.3 27.9 339 193-532 2-364 (1714)
21 cd01366 KISc_C_terminal Kinesi 100.0 4E-69 8.7E-74 580.1 36.1 315 194-522 1-329 (329)
22 cd00106 KISc Kinesin motor dom 100.0 1.8E-67 4E-72 566.1 36.2 315 196-517 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 4.6E-67 1E-71 565.0 36.5 322 196-525 1-334 (335)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 1.4E-68 3.1E-73 615.5 24.3 329 192-529 311-650 (670)
25 PF00225 Kinesin: Kinesin moto 100.0 3E-68 6.6E-73 573.7 25.1 316 202-519 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 7.5E-65 1.6E-69 566.8 30.5 329 192-525 28-442 (809)
27 KOG0244 Kinesin-like protein [ 100.0 6.8E-61 1.5E-65 548.7 11.5 316 203-533 1-331 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.2E-57 9.1E-62 516.8 24.9 314 193-526 20-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.3E-46 5E-51 372.9 18.9 173 261-498 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.4 9.3E-07 2E-11 102.8 -13.2 251 192-463 302-566 (568)
31 COG0556 UvrB Helicase subunit 96.3 0.0083 1.8E-07 68.3 7.4 85 244-333 3-100 (663)
32 PF00308 Bac_DnaA: Bacterial d 92.5 0.056 1.2E-06 55.7 1.4 51 244-297 3-53 (219)
33 COG2805 PilT Tfp pilus assembl 90.3 0.15 3.2E-06 55.1 1.9 30 266-295 113-142 (353)
34 PRK06893 DNA replication initi 90.3 0.19 4.2E-06 52.0 2.7 48 244-297 11-58 (229)
35 PRK06620 hypothetical protein; 87.3 0.23 5E-06 51.1 0.8 50 243-296 10-62 (214)
36 PRK12377 putative replication 86.9 0.47 1E-05 50.1 2.9 50 246-297 71-120 (248)
37 PRK06526 transposase; Provisio 86.7 0.33 7.2E-06 51.3 1.6 42 252-298 77-118 (254)
38 TIGR02928 orc1/cdc6 family rep 86.4 1.2 2.5E-05 48.8 5.8 38 257-295 19-57 (365)
39 PRK08084 DNA replication initi 86.0 0.51 1.1E-05 49.1 2.6 48 244-297 17-64 (235)
40 PRK08116 hypothetical protein; 86.0 0.43 9.4E-06 50.8 2.1 51 244-296 80-132 (268)
41 COG1474 CDC6 Cdc6-related prot 86.0 1.4 3E-05 49.2 6.1 50 270-328 33-83 (366)
42 PRK09087 hypothetical protein; 85.2 0.46 9.9E-06 49.3 1.8 48 243-296 15-62 (226)
43 PRK14088 dnaA chromosomal repl 85.1 0.48 1E-05 54.0 2.0 51 243-297 99-149 (440)
44 PRK14086 dnaA chromosomal repl 85.0 0.41 8.9E-06 56.6 1.4 51 244-297 283-333 (617)
45 PRK05642 DNA replication initi 85.0 0.55 1.2E-05 48.8 2.3 47 244-297 14-64 (234)
46 TIGR00362 DnaA chromosomal rep 84.2 0.6 1.3E-05 52.4 2.3 51 243-296 104-154 (405)
47 TIGR00631 uvrb excinuclease AB 83.9 1.4 3E-05 52.9 5.2 82 246-332 2-96 (655)
48 PRK07952 DNA replication prote 83.9 0.75 1.6E-05 48.5 2.7 51 245-297 68-118 (244)
49 PF04851 ResIII: Type III rest 83.4 0.7 1.5E-05 44.4 2.1 30 268-297 14-44 (184)
50 PRK06835 DNA replication prote 83.4 0.37 8E-06 53.0 0.1 36 260-297 167-202 (329)
51 PRK00149 dnaA chromosomal repl 83.2 0.67 1.5E-05 52.8 2.1 52 243-297 116-167 (450)
52 TIGR03420 DnaA_homol_Hda DnaA 82.7 0.97 2.1E-05 45.8 2.9 47 244-296 10-56 (226)
53 cd00009 AAA The AAA+ (ATPases 82.7 0.91 2E-05 41.1 2.5 27 269-295 10-36 (151)
54 PRK14087 dnaA chromosomal repl 82.7 0.7 1.5E-05 52.9 2.0 49 245-296 111-159 (450)
55 COG2804 PulE Type II secretory 82.0 0.74 1.6E-05 53.0 1.9 29 268-296 248-276 (500)
56 PRK00411 cdc6 cell division co 81.4 1.2 2.6E-05 49.4 3.2 37 258-295 35-72 (394)
57 PRK08903 DnaA regulatory inact 80.5 1.4 3.1E-05 45.0 3.2 49 243-296 12-60 (227)
58 PRK08181 transposase; Validate 79.8 1.1 2.4E-05 47.9 2.2 22 275-298 105-126 (269)
59 PRK08939 primosomal protein Dn 79.8 0.81 1.8E-05 49.8 1.2 51 246-297 124-175 (306)
60 PRK08727 hypothetical protein; 79.2 1.1 2.3E-05 46.7 1.8 46 244-297 14-60 (233)
61 PF05673 DUF815: Protein of un 78.5 2.1 4.5E-05 45.3 3.7 124 246-398 24-155 (249)
62 cd00046 DEXDc DEAD-like helica 77.2 1 2.2E-05 40.4 0.8 17 281-297 3-19 (144)
63 PF13245 AAA_19: Part of AAA d 76.0 1.5 3.2E-05 37.9 1.5 26 270-296 3-28 (76)
64 PTZ00112 origin recognition co 75.3 4.3 9.4E-05 50.1 5.5 21 276-296 779-799 (1164)
65 TIGR02538 type_IV_pilB type IV 74.6 1.5 3.3E-05 51.6 1.6 28 269-296 307-334 (564)
66 PRK10436 hypothetical protein; 74.2 1.6 3.6E-05 50.1 1.7 27 270-296 210-236 (462)
67 TIGR02533 type_II_gspE general 73.7 1.8 3.8E-05 50.2 1.8 28 269-296 233-260 (486)
68 PF01935 DUF87: Domain of unkn 73.7 1.3 2.8E-05 45.3 0.6 17 280-296 25-41 (229)
69 PF05597 Phasin: Poly(hydroxya 73.7 26 0.00057 33.7 9.4 78 626-705 38-127 (132)
70 COG1484 DnaC DNA replication p 73.5 2.5 5.5E-05 44.7 2.8 50 245-297 75-124 (254)
71 PRK09183 transposase/IS protei 73.2 2.3 5E-05 45.1 2.4 46 248-298 77-122 (259)
72 PRK12422 chromosomal replicati 73.0 2.4 5.3E-05 48.5 2.7 52 243-297 105-160 (445)
73 COG5008 PilU Tfp pilus assembl 72.9 2.4 5.3E-05 45.4 2.4 30 266-295 115-144 (375)
74 PF13401 AAA_22: AAA domain; P 72.7 1.2 2.5E-05 40.9 0.0 18 278-295 4-21 (131)
75 TIGR01420 pilT_fam pilus retra 72.4 1.9 4.2E-05 47.4 1.7 26 271-296 115-140 (343)
76 PF00270 DEAD: DEAD/DEAH box h 72.4 1.9 4.2E-05 41.1 1.5 25 270-296 8-32 (169)
77 PRK06921 hypothetical protein; 72.2 2.6 5.6E-05 44.9 2.5 32 266-297 102-136 (266)
78 PF13604 AAA_30: AAA domain; P 72.1 1.9 4.2E-05 43.5 1.4 28 269-296 9-36 (196)
79 TIGR02525 plasmid_TraJ plasmid 71.5 2.2 4.8E-05 47.8 1.8 20 277-296 148-167 (372)
80 smart00382 AAA ATPases associa 71.2 1.6 3.5E-05 38.8 0.6 18 279-296 3-20 (148)
81 PF12846 AAA_10: AAA-like doma 71.0 1.6 3.5E-05 45.5 0.6 19 278-296 1-19 (304)
82 PF00437 T2SE: Type II/IV secr 70.9 2.1 4.5E-05 45.1 1.4 18 278-295 127-144 (270)
83 PF01637 Arch_ATPase: Archaeal 70.7 1.9 4E-05 43.1 1.0 30 266-295 8-37 (234)
84 COG0593 DnaA ATPase involved i 70.6 2.3 5E-05 48.1 1.7 51 243-296 81-131 (408)
85 cd01131 PilT Pilus retraction 70.2 1.8 3.9E-05 43.8 0.7 19 278-296 1-19 (198)
86 TIGR02524 dot_icm_DotB Dot/Icm 70.0 2.4 5.2E-05 47.2 1.7 21 276-296 132-152 (358)
87 cd01129 PulE-GspE PulE/GspE Th 69.3 2.7 5.9E-05 44.6 1.9 26 271-296 73-98 (264)
88 PF01695 IstB_IS21: IstB-like 69.2 2.8 6E-05 41.9 1.8 21 277-297 46-66 (178)
89 smart00053 DYNc Dynamin, GTPas 68.5 5.7 0.00012 41.9 4.0 54 362-431 85-138 (240)
90 cd01382 MYSc_type_VI Myosin mo 68.0 43 0.00093 40.9 11.8 21 275-295 88-108 (717)
91 COG1222 RPT1 ATP-dependent 26S 67.9 7.8 0.00017 43.2 5.0 117 195-312 93-242 (406)
92 PF13118 DUF3972: Protein of u 67.5 32 0.00069 32.9 8.3 60 625-698 65-124 (126)
93 PTZ00454 26S protease regulato 66.5 3 6.4E-05 47.2 1.5 53 243-295 139-196 (398)
94 KOG0246 Kinesin-like protein [ 66.1 8.3 0.00018 45.0 4.9 35 627-661 639-673 (676)
95 KOG0989 Replication factor C, 65.8 4.6 0.0001 44.1 2.7 27 269-295 48-74 (346)
96 TIGR01242 26Sp45 26S proteasom 65.8 6.5 0.00014 43.5 4.0 53 244-296 117-174 (364)
97 PRK13894 conjugal transfer ATP 65.7 3.6 7.7E-05 45.1 1.9 28 268-296 139-166 (319)
98 TIGR03015 pepcterm_ATPase puta 65.2 4 8.6E-05 42.5 2.1 23 273-295 38-60 (269)
99 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.0 5.1 0.00011 40.2 2.8 17 280-296 40-56 (205)
100 PF06309 Torsin: Torsin; Inte 64.2 2.9 6.4E-05 39.9 0.8 18 278-295 52-70 (127)
101 TIGR01837 PHA_granule_1 poly(h 64.2 37 0.00081 31.9 8.2 78 626-705 25-114 (118)
102 cd01378 MYSc_type_I Myosin mot 63.7 37 0.00081 41.1 10.1 21 275-295 83-103 (674)
103 PF05970 PIF1: PIF1-like helic 63.5 4.8 0.0001 44.7 2.5 36 256-295 4-39 (364)
104 cd00124 MYSc Myosin motor doma 63.4 30 0.00064 42.0 9.2 35 260-295 68-103 (679)
105 smart00242 MYSc Myosin. Large 63.2 28 0.0006 42.2 8.9 36 260-295 74-109 (677)
106 KOG0727 26S proteasome regulat 63.1 15 0.00032 39.3 5.7 120 194-313 96-247 (408)
107 PRK12402 replication factor C 62.8 5.2 0.00011 43.0 2.5 42 247-296 13-54 (337)
108 PLN00020 ribulose bisphosphate 62.6 13 0.00029 41.8 5.6 53 243-295 109-165 (413)
109 PF13086 AAA_11: AAA domain; P 62.5 3.7 8E-05 40.9 1.2 26 270-296 10-35 (236)
110 PRK03992 proteasome-activating 62.4 3.9 8.4E-05 45.9 1.5 51 245-295 127-182 (389)
111 PF13479 AAA_24: AAA domain 62.3 3.6 7.9E-05 42.1 1.2 19 278-296 3-21 (213)
112 TIGR02782 TrbB_P P-type conjug 61.6 4.1 8.9E-05 44.2 1.5 28 268-296 123-150 (299)
113 PF00004 AAA: ATPase family as 61.5 2.9 6.3E-05 38.0 0.2 15 281-295 1-15 (132)
114 PF00448 SRP54: SRP54-type pro 61.0 3.1 6.7E-05 42.3 0.4 16 280-295 3-18 (196)
115 smart00487 DEXDc DEAD-like hel 59.9 5.7 0.00012 37.8 2.0 18 279-296 25-42 (201)
116 cd01384 MYSc_type_XI Myosin mo 59.5 38 0.00082 41.1 9.1 21 275-295 85-105 (674)
117 PHA02544 44 clamp loader, smal 59.5 5.2 0.00011 42.9 1.8 22 275-296 39-61 (316)
118 KOG2543 Origin recognition com 58.6 4.4 9.6E-05 45.4 1.1 38 279-330 31-68 (438)
119 PF13191 AAA_16: AAA ATPase do 58.5 2.7 5.9E-05 40.7 -0.5 22 274-295 20-41 (185)
120 PRK12723 flagellar biosynthesi 58.4 8.9 0.00019 43.3 3.4 19 278-296 174-192 (388)
121 PHA00729 NTP-binding motif con 58.4 7.2 0.00016 40.8 2.5 32 266-297 5-36 (226)
122 cd01377 MYSc_type_II Myosin mo 57.6 57 0.0012 39.7 10.3 21 275-295 88-108 (693)
123 PF13207 AAA_17: AAA domain; P 57.5 4.2 9.1E-05 36.9 0.6 16 280-295 1-16 (121)
124 KOG0340 ATP-dependent RNA heli 57.4 10 0.00023 42.1 3.6 26 268-295 36-61 (442)
125 PRK13833 conjugal transfer pro 57.2 6.8 0.00015 43.1 2.2 17 280-296 146-162 (323)
126 PF02562 PhoH: PhoH-like prote 56.9 7 0.00015 40.3 2.1 19 277-295 18-36 (205)
127 TIGR03499 FlhF flagellar biosy 56.8 11 0.00023 40.5 3.6 18 280-297 196-213 (282)
128 TIGR00635 ruvB Holliday juncti 56.6 6.5 0.00014 42.0 1.9 42 254-296 5-48 (305)
129 PF05496 RuvB_N: Holliday junc 56.1 13 0.00028 39.1 3.9 43 252-295 23-67 (233)
130 cd01130 VirB11-like_ATPase Typ 55.8 6.8 0.00015 39.0 1.8 28 268-296 16-43 (186)
131 PF05130 FlgN: FlgN protein; 55.2 93 0.002 28.6 9.3 60 628-703 5-64 (143)
132 PF00910 RNA_helicase: RNA hel 54.7 4.1 8.9E-05 37.0 0.0 16 281-296 1-16 (107)
133 cd01380 MYSc_type_V Myosin mot 54.1 76 0.0016 38.6 10.5 21 275-295 83-103 (691)
134 PF00580 UvrD-helicase: UvrD/R 53.9 5.4 0.00012 41.9 0.8 19 277-295 12-30 (315)
135 PTZ00361 26 proteosome regulat 53.5 12 0.00027 42.8 3.6 17 280-296 219-235 (438)
136 cd00268 DEADc DEAD-box helicas 52.6 8.8 0.00019 38.0 2.0 23 271-295 31-53 (203)
137 TIGR02903 spore_lon_C ATP-depe 52.4 7.7 0.00017 46.3 1.8 42 246-295 151-192 (615)
138 PRK11776 ATP-dependent RNA hel 52.3 8.2 0.00018 44.0 2.0 24 270-295 35-58 (460)
139 PTZ00424 helicase 45; Provisio 51.8 7.6 0.00017 43.0 1.6 25 269-295 58-82 (401)
140 KOG1514 Origin recognition com 51.4 16 0.00035 43.9 4.1 22 275-296 419-440 (767)
141 KOG0335 ATP-dependent RNA heli 51.4 8.2 0.00018 44.5 1.7 58 272-331 107-189 (482)
142 PRK13900 type IV secretion sys 51.3 8.9 0.00019 42.3 1.9 29 267-296 150-178 (332)
143 PF07728 AAA_5: AAA domain (dy 51.2 5.3 0.00011 37.4 0.1 15 281-295 2-16 (139)
144 KOG3850 Predicted membrane pro 51.0 84 0.0018 35.4 9.1 74 625-699 258-336 (455)
145 PRK13342 recombination factor 50.9 8.4 0.00018 43.5 1.7 39 257-296 16-54 (413)
146 PRK06547 hypothetical protein; 50.8 11 0.00024 37.4 2.4 28 268-295 5-32 (172)
147 PRK13851 type IV secretion sys 50.6 6.3 0.00014 43.7 0.7 28 268-296 153-180 (344)
148 PF07724 AAA_2: AAA domain (Cd 50.2 6.6 0.00014 39.1 0.7 17 279-295 4-20 (171)
149 PF13671 AAA_33: AAA domain; P 49.2 7.1 0.00015 36.3 0.7 16 280-295 1-16 (143)
150 PF07693 KAP_NTPase: KAP famil 49.2 11 0.00025 40.2 2.4 20 276-295 18-37 (325)
151 COG4962 CpaF Flp pilus assembl 49.0 9.5 0.00021 42.3 1.7 17 279-295 174-190 (355)
152 PF06414 Zeta_toxin: Zeta toxi 48.1 8.1 0.00018 38.9 1.0 20 276-295 13-32 (199)
153 PF00063 Myosin_head: Myosin h 47.9 12 0.00025 45.3 2.4 36 260-295 67-102 (689)
154 PRK11448 hsdR type I restricti 47.7 8.6 0.00019 49.0 1.3 31 266-297 422-452 (1123)
155 PRK11192 ATP-dependent RNA hel 47.7 10 0.00022 42.7 1.8 24 270-295 32-55 (434)
156 PF06048 DUF927: Domain of unk 47.1 15 0.00033 39.4 2.9 34 261-295 177-210 (286)
157 PRK13764 ATPase; Provisional 46.8 9.7 0.00021 45.3 1.4 20 278-297 257-276 (602)
158 COG1223 Predicted ATPase (AAA+ 46.8 8.5 0.00018 41.4 0.9 19 277-295 150-168 (368)
159 PF03215 Rad17: Rad17 cell cyc 46.7 11 0.00024 44.1 1.9 30 266-295 31-62 (519)
160 COG1419 FlhF Flagellar GTP-bin 46.3 15 0.00033 41.6 2.8 37 259-295 180-220 (407)
161 PF11594 Med28: Mediator compl 46.2 1.6E+02 0.0034 27.5 8.8 61 647-708 17-77 (106)
162 PRK04837 ATP-dependent RNA hel 46.2 11 0.00024 42.5 1.7 24 270-295 39-62 (423)
163 TIGR00348 hsdR type I site-spe 46.1 15 0.00032 44.4 2.9 31 265-296 246-281 (667)
164 PF13238 AAA_18: AAA domain; P 46.1 7.5 0.00016 35.1 0.3 16 281-296 1-16 (129)
165 PRK11331 5-methylcytosine-spec 46.0 14 0.00031 42.5 2.6 26 268-295 186-211 (459)
166 PRK10590 ATP-dependent RNA hel 45.5 13 0.00027 42.6 2.1 24 270-295 32-55 (456)
167 PLN03025 replication factor C 45.4 15 0.00033 39.9 2.6 22 276-297 32-53 (319)
168 TIGR02881 spore_V_K stage V sp 45.2 8.7 0.00019 40.4 0.7 18 279-296 43-60 (261)
169 CHL00081 chlI Mg-protoporyphyr 45.2 7.4 0.00016 43.3 0.2 46 243-296 11-56 (350)
170 PRK11546 zraP zinc resistance 44.7 2.1E+02 0.0045 28.1 9.9 67 627-707 50-120 (143)
171 PRK00440 rfc replication facto 44.6 15 0.00033 39.0 2.4 21 275-295 35-55 (319)
172 KOG2373 Predicted mitochondria 44.4 17 0.00038 40.4 2.8 28 268-296 261-291 (514)
173 PRK14722 flhF flagellar biosyn 44.3 9.7 0.00021 42.8 0.9 19 278-296 137-155 (374)
174 TIGR01817 nifA Nif-specific re 44.1 13 0.00029 43.3 2.0 45 245-295 192-236 (534)
175 PRK14961 DNA polymerase III su 43.4 13 0.00028 41.2 1.8 41 247-295 14-55 (363)
176 PRK10416 signal recognition pa 42.9 20 0.00043 39.3 3.0 18 279-296 115-132 (318)
177 PF02456 Adeno_IVa2: Adenoviru 42.1 10 0.00022 41.7 0.5 17 280-296 89-105 (369)
178 PRK10536 hypothetical protein; 42.0 15 0.00033 39.2 1.9 40 246-295 52-91 (262)
179 PRK13341 recombination factor 41.6 16 0.00035 44.5 2.3 22 275-296 49-70 (725)
180 PF05729 NACHT: NACHT domain 41.6 12 0.00026 35.2 1.0 17 280-296 2-18 (166)
181 PF10146 zf-C4H2: Zinc finger- 41.5 1.5E+02 0.0032 31.3 9.0 54 645-698 35-92 (230)
182 TIGR02237 recomb_radB DNA repa 41.1 15 0.00032 36.9 1.6 25 271-295 2-29 (209)
183 PRK00080 ruvB Holliday junctio 41.1 18 0.00039 39.4 2.3 40 256-296 28-69 (328)
184 PF10236 DAP3: Mitochondrial r 41.0 17 0.00037 39.5 2.2 25 272-296 17-41 (309)
185 TIGR01618 phage_P_loop phage n 41.0 12 0.00025 39.0 0.8 21 278-298 12-32 (220)
186 PRK14974 cell division protein 40.8 29 0.00064 38.4 3.9 19 278-296 140-158 (336)
187 PRK04195 replication factor C 40.7 16 0.00036 42.1 2.1 30 266-295 26-56 (482)
188 COG1201 Lhr Lhr-like helicases 40.4 19 0.00041 44.4 2.5 25 269-295 30-54 (814)
189 PF12775 AAA_7: P-loop contain 40.3 15 0.00032 39.3 1.5 18 278-295 33-50 (272)
190 TIGR00614 recQ_fam ATP-depende 40.0 18 0.00039 41.5 2.3 25 269-295 19-43 (470)
191 PF11932 DUF3450: Protein of u 40.0 2.9E+02 0.0062 29.1 11.1 34 671-704 68-101 (251)
192 PRK00771 signal recognition pa 39.8 29 0.00063 39.8 3.8 19 278-296 95-113 (437)
193 COG4096 HsdR Type I site-speci 39.3 20 0.00043 43.8 2.5 38 259-297 166-204 (875)
194 cd01120 RecA-like_NTPases RecA 39.0 12 0.00026 34.8 0.5 16 281-296 2-17 (165)
195 PF03193 DUF258: Protein of un 38.8 11 0.00023 37.5 0.1 25 270-296 29-53 (161)
196 PRK11634 ATP-dependent RNA hel 38.7 16 0.00035 43.7 1.7 25 269-295 36-60 (629)
197 KOG0739 AAA+-type ATPase [Post 38.5 28 0.0006 38.3 3.1 36 260-295 144-183 (439)
198 TIGR02640 gas_vesic_GvpN gas v 38.5 26 0.00057 37.0 3.0 29 265-295 10-38 (262)
199 PF04102 SlyX: SlyX; InterPro 38.3 65 0.0014 27.4 4.8 36 672-707 17-52 (69)
200 PF13173 AAA_14: AAA domain 38.2 14 0.0003 34.4 0.7 17 279-295 3-19 (128)
201 KOG0804 Cytoplasmic Zn-finger 38.0 2.9E+02 0.0062 32.0 10.9 54 645-704 392-452 (493)
202 TIGR00618 sbcc exonuclease Sbc 37.9 25 0.00055 44.5 3.3 17 279-295 27-43 (1042)
203 TIGR02902 spore_lonB ATP-depen 37.6 19 0.00041 42.3 1.9 42 246-295 62-103 (531)
204 TIGR02788 VirB11 P-type DNA tr 37.3 23 0.00049 38.5 2.4 30 266-296 133-162 (308)
205 smart00763 AAA_PrkA PrkA AAA d 37.3 33 0.00072 38.4 3.7 41 250-295 52-95 (361)
206 COG2256 MGS1 ATPase related to 36.7 19 0.00041 40.8 1.6 39 256-295 27-65 (436)
207 PRK00295 hypothetical protein; 36.6 99 0.0021 26.3 5.6 36 672-707 18-53 (68)
208 PF13555 AAA_29: P-loop contai 36.2 15 0.00033 30.7 0.6 15 281-295 26-40 (62)
209 PRK02119 hypothetical protein; 36.1 98 0.0021 26.7 5.6 35 672-706 22-56 (73)
210 PF00735 Septin: Septin; Inte 36.1 11 0.00025 40.4 -0.1 21 275-295 1-21 (281)
211 PRK04537 ATP-dependent RNA hel 35.9 20 0.00044 42.4 1.9 24 270-295 40-63 (572)
212 TIGR00376 DNA helicase, putati 35.9 21 0.00045 42.9 2.0 17 280-296 175-191 (637)
213 PRK00736 hypothetical protein; 35.7 1E+02 0.0022 26.2 5.6 36 672-707 18-53 (68)
214 TIGR03689 pup_AAA proteasome A 35.6 15 0.00032 43.1 0.6 16 280-295 218-233 (512)
215 PHA02244 ATPase-like protein 35.3 31 0.00068 38.9 3.1 25 269-295 112-136 (383)
216 PRK02793 phi X174 lysis protei 35.1 1E+02 0.0023 26.5 5.6 35 672-706 21-55 (72)
217 PRK04325 hypothetical protein; 35.0 2.3E+02 0.0049 24.5 7.7 36 672-707 22-57 (74)
218 PRK01297 ATP-dependent RNA hel 35.0 21 0.00044 41.0 1.7 25 269-295 117-141 (475)
219 COG2433 Uncharacterized conser 34.8 2E+02 0.0043 34.5 9.3 12 417-428 254-265 (652)
220 KOG0926 DEAH-box RNA helicase 34.7 22 0.00047 43.5 1.8 19 277-295 270-288 (1172)
221 COG1219 ClpX ATP-dependent pro 34.6 18 0.00038 40.1 1.0 19 277-295 96-114 (408)
222 PRK00846 hypothetical protein; 34.6 1.1E+02 0.0023 26.9 5.6 36 672-707 26-61 (77)
223 cd01383 MYSc_type_VIII Myosin 34.4 37 0.0008 41.2 3.7 21 275-295 89-109 (677)
224 PF06745 KaiC: KaiC; InterPro 34.3 23 0.00051 36.0 1.8 28 268-295 6-36 (226)
225 PHA02653 RNA helicase NPH-II; 34.2 28 0.00061 42.2 2.7 25 268-294 171-195 (675)
226 PRK06067 flagellar accessory p 34.1 26 0.00056 36.0 2.1 30 266-295 10-42 (234)
227 PRK05703 flhF flagellar biosyn 34.1 17 0.00037 41.5 0.8 18 280-297 223-240 (424)
228 PRK09270 nucleoside triphospha 34.1 37 0.00081 34.9 3.3 37 259-295 13-50 (229)
229 KOG3859 Septins (P-loop GTPase 34.1 23 0.00049 38.4 1.6 24 272-295 36-59 (406)
230 PF13476 AAA_23: AAA domain; P 33.9 17 0.00037 35.4 0.7 18 279-296 20-37 (202)
231 PRK11889 flhF flagellar biosyn 33.8 33 0.00072 39.2 3.0 18 279-296 242-259 (436)
232 cd01385 MYSc_type_IX Myosin mo 33.4 36 0.00079 41.3 3.5 22 275-296 91-112 (692)
233 cd01394 radB RadB. The archaea 33.4 29 0.00063 35.1 2.3 28 268-295 6-36 (218)
234 cd02021 GntK Gluconate kinase 33.4 17 0.00037 34.4 0.6 15 281-295 2-16 (150)
235 TIGR01360 aden_kin_iso1 adenyl 33.3 24 0.00053 34.3 1.7 29 280-308 5-39 (188)
236 cd01381 MYSc_type_VII Myosin m 33.2 39 0.00084 41.0 3.6 22 275-296 83-104 (671)
237 KOG3091 Nuclear pore complex, 32.9 2.6E+02 0.0057 32.6 9.8 31 626-656 336-366 (508)
238 PRK04406 hypothetical protein; 32.8 1.2E+02 0.0026 26.4 5.6 35 672-706 24-58 (75)
239 PLN00206 DEAD-box ATP-dependen 32.7 31 0.00068 40.2 2.7 23 270-294 152-174 (518)
240 TIGR03819 heli_sec_ATPase heli 32.4 26 0.00057 38.7 2.0 29 267-296 168-196 (340)
241 cd01387 MYSc_type_XV Myosin mo 32.4 39 0.00084 41.0 3.4 21 275-295 84-104 (677)
242 cd01850 CDC_Septin CDC/Septin. 32.2 21 0.00046 38.2 1.1 21 275-295 1-21 (276)
243 PRK14723 flhF flagellar biosyn 32.2 41 0.00089 41.3 3.6 25 638-662 672-696 (767)
244 cd01123 Rad51_DMC1_radA Rad51_ 32.2 24 0.00053 35.9 1.5 29 267-295 5-36 (235)
245 COG1125 OpuBA ABC-type proline 32.1 19 0.00041 38.7 0.7 58 457-524 145-214 (309)
246 cd01127 TrwB Bacterial conjuga 32.0 18 0.00039 40.9 0.6 19 278-296 42-60 (410)
247 PRK06995 flhF flagellar biosyn 32.0 19 0.00041 41.9 0.8 18 279-296 257-274 (484)
248 PRK05580 primosome assembly pr 31.8 24 0.00051 42.8 1.5 36 253-295 144-179 (679)
249 PRK00131 aroK shikimate kinase 31.6 22 0.00048 34.0 1.0 17 279-295 5-21 (175)
250 PRK04328 hypothetical protein; 31.6 31 0.00068 36.1 2.3 28 267-294 9-39 (249)
251 cd00632 Prefoldin_beta Prefold 31.5 2.5E+02 0.0054 25.5 7.9 36 670-705 67-102 (105)
252 TIGR03158 cas3_cyano CRISPR-as 31.3 29 0.00063 38.4 2.1 26 270-295 6-31 (357)
253 KOG0744 AAA+-type ATPase [Post 31.2 55 0.0012 36.4 4.0 21 277-297 176-196 (423)
254 TIGR03752 conj_TIGR03752 integ 31.1 2E+02 0.0043 33.5 8.5 77 624-704 56-140 (472)
255 TIGR01241 FtsH_fam ATP-depende 31.0 19 0.00041 41.7 0.5 51 245-296 51-106 (495)
256 PRK09361 radB DNA repair and r 30.9 34 0.00074 34.8 2.4 30 266-295 8-40 (225)
257 cd01393 recA_like RecA is a b 30.8 32 0.00069 34.8 2.1 31 266-296 4-37 (226)
258 COG3829 RocR Transcriptional r 30.7 31 0.00067 40.5 2.1 44 243-292 239-282 (560)
259 KOG0953 Mitochondrial RNA heli 30.6 24 0.00051 41.5 1.2 16 280-295 193-208 (700)
260 TIGR01359 UMP_CMP_kin_fam UMP- 30.4 22 0.00048 34.7 0.8 15 281-295 2-16 (183)
261 PRK06696 uridine kinase; Valid 30.4 42 0.00091 34.4 2.9 30 266-295 7-39 (223)
262 TIGR01389 recQ ATP-dependent D 30.2 31 0.00068 40.8 2.2 25 269-295 21-45 (591)
263 cd01126 TraG_VirD4 The TraG/Tr 30.2 26 0.00056 39.0 1.4 15 281-295 2-16 (384)
264 PF14712 Snapin_Pallidin: Snap 30.2 3.2E+02 0.007 23.9 8.2 66 626-703 20-87 (92)
265 KOG1803 DNA helicase [Replicat 30.0 34 0.00075 40.5 2.4 18 279-296 202-219 (649)
266 TIGR02030 BchI-ChlI magnesium 30.0 24 0.00052 39.0 1.1 43 246-296 1-43 (337)
267 TIGR02173 cyt_kin_arch cytidyl 29.6 32 0.0007 32.9 1.8 16 280-295 2-17 (171)
268 TIGR03877 thermo_KaiC_1 KaiC d 29.6 36 0.00079 35.2 2.3 27 268-294 8-37 (237)
269 PRK11057 ATP-dependent DNA hel 29.6 33 0.00072 40.8 2.3 23 270-294 34-56 (607)
270 PF10473 CENP-F_leu_zip: Leuci 29.5 3.9E+02 0.0084 26.1 9.1 28 633-660 57-84 (140)
271 PRK10917 ATP-dependent DNA hel 29.4 38 0.00082 41.0 2.7 39 253-295 261-299 (681)
272 PHA01747 putative ATP-dependen 29.2 25 0.00054 39.6 1.1 95 261-380 173-273 (425)
273 PF00931 NB-ARC: NB-ARC domain 29.2 45 0.00098 34.8 3.0 30 266-295 5-36 (287)
274 TIGR01243 CDC48 AAA family ATP 29.2 22 0.00048 43.3 0.7 51 245-295 174-229 (733)
275 TIGR01650 PD_CobS cobaltochela 29.2 24 0.00052 39.0 0.9 26 268-295 56-81 (327)
276 PRK10865 protein disaggregatio 29.1 34 0.00074 42.6 2.3 17 279-295 599-615 (857)
277 PF12774 AAA_6: Hydrolytic ATP 29.0 27 0.00059 36.5 1.3 18 279-296 33-50 (231)
278 PRK13182 racA polar chromosome 29.0 3.7E+02 0.0081 27.1 9.2 24 686-709 124-147 (175)
279 TIGR02746 TraC-F-type type-IV 28.9 21 0.00046 43.6 0.5 19 278-296 430-448 (797)
280 smart00502 BBC B-Box C-termina 28.9 4E+02 0.0086 23.8 8.9 18 669-686 42-59 (127)
281 PRK07261 topology modulation p 28.8 24 0.00053 34.8 0.8 15 281-295 3-17 (171)
282 cd00464 SK Shikimate kinase (S 28.7 23 0.0005 33.3 0.6 16 280-295 1-16 (154)
283 TIGR02322 phosphon_PhnN phosph 28.6 23 0.00051 34.5 0.7 17 280-296 3-19 (179)
284 PRK13729 conjugal transfer pil 28.6 2.1E+02 0.0046 33.3 8.2 43 644-696 78-120 (475)
285 TIGR02880 cbbX_cfxQ probable R 28.5 23 0.00049 38.1 0.6 16 280-295 60-75 (284)
286 PF11559 ADIP: Afadin- and alp 28.5 2.8E+02 0.006 26.7 8.1 56 636-697 95-150 (151)
287 CHL00181 cbbX CbbX; Provisiona 28.4 23 0.0005 38.2 0.6 16 281-296 62-77 (287)
288 PRK11664 ATP-dependent RNA hel 28.3 39 0.00084 41.9 2.6 28 266-295 10-37 (812)
289 PRK12724 flagellar biosynthesi 28.3 47 0.001 38.1 3.0 18 279-296 224-241 (432)
290 PRK15429 formate hydrogenlyase 28.3 26 0.00055 42.4 1.0 46 244-295 371-416 (686)
291 PRK14964 DNA polymerase III su 28.3 29 0.00063 40.4 1.4 41 247-295 11-52 (491)
292 PF08317 Spc7: Spc7 kinetochor 28.2 4.5E+02 0.0098 28.8 10.6 61 644-704 179-240 (325)
293 PRK14531 adenylate kinase; Pro 28.2 23 0.0005 35.1 0.5 16 280-295 4-19 (183)
294 KOG0726 26S proteasome regulat 27.9 48 0.001 36.4 2.8 35 279-313 220-277 (440)
295 PF12999 PRKCSH-like: Glucosid 27.6 3.4E+02 0.0073 27.6 8.6 29 673-701 146-174 (176)
296 PF05667 DUF812: Protein of un 27.6 3.7E+02 0.008 32.3 10.3 55 645-706 373-427 (594)
297 TIGR02655 circ_KaiC circadian 27.5 64 0.0014 37.3 4.1 30 266-295 248-280 (484)
298 cd01428 ADK Adenylate kinase ( 27.4 27 0.00058 34.3 0.8 15 281-295 2-16 (194)
299 PRK14952 DNA polymerase III su 27.2 32 0.0007 40.9 1.6 41 247-295 11-52 (584)
300 PF10267 Tmemb_cc2: Predicted 27.1 4.2E+02 0.0091 30.3 10.2 76 625-701 210-290 (395)
301 KOG0735 AAA+-type ATPase [Post 27.1 40 0.00086 41.0 2.2 19 277-295 700-718 (952)
302 TIGR00064 ftsY signal recognit 26.9 30 0.00064 37.1 1.1 18 279-296 73-90 (272)
303 PF10267 Tmemb_cc2: Predicted 26.9 2.8E+02 0.0061 31.6 8.8 34 675-708 46-83 (395)
304 TIGR03881 KaiC_arch_4 KaiC dom 26.8 43 0.00092 34.1 2.2 28 268-295 7-37 (229)
305 PRK01172 ski2-like helicase; P 26.8 37 0.00081 40.8 2.1 22 272-295 33-54 (674)
306 COG0630 VirB11 Type IV secreto 26.8 24 0.00051 38.6 0.4 19 278-296 143-161 (312)
307 PRK05298 excinuclease ABC subu 26.7 55 0.0012 39.5 3.4 86 244-334 3-101 (652)
308 TIGR03744 traC_PFL_4706 conjug 26.6 26 0.00055 43.8 0.6 21 277-297 474-494 (893)
309 PRK08118 topology modulation p 26.5 28 0.00062 34.2 0.8 15 281-295 4-18 (167)
310 COG5019 CDC3 Septin family pro 26.5 35 0.00076 38.2 1.6 21 275-295 20-40 (373)
311 PRK12726 flagellar biosynthesi 26.4 28 0.00061 39.5 0.8 20 278-297 206-225 (407)
312 KOG2228 Origin recognition com 26.3 2.1E+02 0.0046 32.2 7.4 37 255-295 30-66 (408)
313 PF08477 Miro: Miro-like prote 26.3 24 0.00052 31.5 0.2 15 281-295 2-16 (119)
314 PRK14721 flhF flagellar biosyn 26.3 28 0.00061 39.7 0.9 19 278-296 191-209 (420)
315 cd01983 Fer4_NifH The Fer4_Nif 26.2 29 0.00063 29.1 0.7 16 281-296 2-17 (99)
316 cd00820 PEPCK_HprK Phosphoenol 26.2 30 0.00066 32.0 0.9 17 279-295 16-32 (107)
317 PRK06305 DNA polymerase III su 26.2 37 0.00079 39.1 1.7 41 247-295 15-56 (451)
318 TIGR01313 therm_gnt_kin carboh 26.1 24 0.00051 33.9 0.2 15 281-295 1-15 (163)
319 KOG0354 DEAD-box like helicase 26.1 46 0.00099 40.6 2.5 26 267-295 68-93 (746)
320 cd01379 MYSc_type_III Myosin m 26.0 55 0.0012 39.5 3.3 22 275-296 83-104 (653)
321 PRK14970 DNA polymerase III su 25.9 48 0.001 36.5 2.6 28 268-295 28-56 (367)
322 KOG4657 Uncharacterized conser 25.9 5.4E+02 0.012 27.2 9.8 25 640-664 43-67 (246)
323 cd01386 MYSc_type_XVIII Myosin 25.8 54 0.0012 40.4 3.2 21 275-295 83-103 (767)
324 PRK14127 cell division protein 25.7 2.1E+02 0.0045 26.8 6.3 40 666-705 20-62 (109)
325 KOG0730 AAA+-type ATPase [Post 25.7 45 0.00098 40.0 2.4 17 279-295 469-485 (693)
326 TIGR02397 dnaX_nterm DNA polym 25.6 50 0.0011 35.9 2.6 25 271-295 28-53 (355)
327 KOG0729 26S proteasome regulat 25.5 35 0.00076 36.9 1.3 20 276-295 207-228 (435)
328 PHA02624 large T antigen; Prov 25.4 52 0.0011 39.4 2.8 26 270-295 421-448 (647)
329 PRK14955 DNA polymerase III su 25.4 37 0.0008 38.2 1.6 41 247-295 14-55 (397)
330 PRK14962 DNA polymerase III su 25.3 49 0.0011 38.4 2.6 41 247-295 12-53 (472)
331 TIGR00602 rad24 checkpoint pro 25.3 38 0.00082 40.8 1.7 17 280-296 112-128 (637)
332 cd02020 CMPK Cytidine monophos 25.3 31 0.00068 32.0 0.8 15 281-295 2-16 (147)
333 COG1783 XtmB Phage terminase l 25.2 94 0.002 35.2 4.6 16 280-295 26-41 (414)
334 PTZ00110 helicase; Provisional 25.2 40 0.00087 39.6 1.9 24 270-295 161-184 (545)
335 TIGR00231 small_GTP small GTP- 25.2 28 0.0006 31.5 0.4 16 280-295 3-18 (161)
336 COG0467 RAD55 RecA-superfamily 25.0 46 0.001 34.8 2.1 25 270-294 12-39 (260)
337 TIGR01351 adk adenylate kinase 24.8 40 0.00086 34.1 1.5 42 639-682 168-209 (210)
338 PF04548 AIG1: AIG1 family; I 24.7 30 0.00065 35.3 0.6 16 280-295 2-17 (212)
339 PRK09111 DNA polymerase III su 24.7 36 0.00077 40.7 1.3 27 269-295 36-63 (598)
340 TIGR02236 recomb_radA DNA repa 24.7 48 0.001 35.7 2.2 30 266-295 80-112 (310)
341 PF05791 Bacillus_HBL: Bacillu 24.6 1.8E+02 0.0038 29.4 6.1 76 627-705 106-181 (184)
342 TIGR00643 recG ATP-dependent D 24.4 51 0.0011 39.5 2.6 39 253-295 235-273 (630)
343 PRK10867 signal recognition pa 24.4 73 0.0016 36.6 3.7 19 278-296 100-118 (433)
344 PF12761 End3: Actin cytoskele 24.4 5E+02 0.011 26.8 9.2 50 644-693 134-194 (195)
345 cd01124 KaiC KaiC is a circadi 24.4 32 0.0007 33.4 0.8 15 281-295 2-16 (187)
346 CHL00195 ycf46 Ycf46; Provisio 24.4 31 0.00067 40.2 0.7 18 278-295 259-276 (489)
347 PRK13767 ATP-dependent helicas 24.3 43 0.00093 41.8 2.0 23 271-295 42-64 (876)
348 cd02023 UMPK Uridine monophosp 24.2 29 0.00063 34.6 0.4 15 281-295 2-16 (198)
349 TIGR02639 ClpA ATP-dependent C 24.2 34 0.00073 41.8 1.0 31 268-298 193-223 (731)
350 KOG3850 Predicted membrane pro 24.2 5.8E+02 0.012 29.1 10.2 33 675-707 82-118 (455)
351 PF15035 Rootletin: Ciliary ro 24.1 3.3E+02 0.0072 27.6 7.9 79 627-705 80-159 (182)
352 PRK08233 hypothetical protein; 23.9 33 0.00071 33.2 0.7 16 280-295 5-20 (182)
353 PF02367 UPF0079: Uncharacteri 23.9 34 0.00074 32.5 0.8 20 279-298 16-35 (123)
354 PF10923 DUF2791: P-loop Domai 23.7 61 0.0013 37.1 2.9 27 269-295 40-66 (416)
355 PF00485 PRK: Phosphoribulokin 23.6 30 0.00064 34.6 0.3 15 281-295 2-16 (194)
356 PRK09039 hypothetical protein; 23.5 4.7E+02 0.01 29.1 9.7 53 638-696 147-199 (343)
357 cd02025 PanK Pantothenate kina 23.5 24 0.00051 36.5 -0.4 12 284-295 5-16 (220)
358 CHL00176 ftsH cell division pr 23.5 50 0.0011 39.8 2.3 18 279-296 217-234 (638)
359 COG0419 SbcC ATPase involved i 23.4 90 0.002 39.1 4.5 18 278-295 25-42 (908)
360 PRK06217 hypothetical protein; 23.4 34 0.00073 33.8 0.7 15 281-295 4-18 (183)
361 PF04466 Terminase_3: Phage te 23.2 27 0.00059 39.2 0.0 17 281-297 5-21 (387)
362 COG1102 Cmk Cytidylate kinase 23.2 40 0.00086 33.9 1.1 31 282-312 4-40 (179)
363 PF10412 TrwB_AAD_bind: Type I 23.2 28 0.0006 39.1 0.0 18 279-296 16-33 (386)
364 PRK00300 gmk guanylate kinase; 23.0 36 0.00077 34.0 0.8 18 278-295 5-22 (205)
365 TIGR02768 TraA_Ti Ti-type conj 23.0 46 0.001 40.8 1.9 28 269-297 360-387 (744)
366 PRK11034 clpA ATP-dependent Cl 23.0 68 0.0015 39.5 3.3 36 258-294 463-504 (758)
367 TIGR03263 guanyl_kin guanylate 22.9 35 0.00077 33.2 0.7 16 280-295 3-18 (180)
368 TIGR02688 conserved hypothetic 22.8 27 0.0006 40.0 -0.1 25 275-301 208-232 (449)
369 smart00787 Spc7 Spc7 kinetocho 22.7 6E+02 0.013 28.0 10.2 27 636-662 166-192 (312)
370 PF15066 CAGE1: Cancer-associa 22.7 5.1E+02 0.011 30.2 9.6 67 627-694 386-467 (527)
371 PF05700 BCAS2: Breast carcino 22.6 6.1E+02 0.013 26.2 9.8 41 667-707 173-216 (221)
372 KOG0330 ATP-dependent RNA heli 22.6 72 0.0016 36.2 3.1 25 269-295 91-115 (476)
373 PRK14958 DNA polymerase III su 22.6 43 0.00094 39.2 1.5 41 247-295 14-55 (509)
374 PRK13889 conjugal transfer rel 22.4 47 0.001 42.0 1.8 54 647-703 880-941 (988)
375 cd01853 Toc34_like Toc34-like 22.4 55 0.0012 34.6 2.1 20 276-295 29-48 (249)
376 PF03961 DUF342: Protein of un 22.4 6E+02 0.013 29.2 10.6 62 645-706 344-408 (451)
377 smart00489 DEXDc3 DEAD-like he 22.3 64 0.0014 34.8 2.6 35 255-295 10-44 (289)
378 smart00488 DEXDc2 DEAD-like he 22.3 64 0.0014 34.8 2.6 35 255-295 10-44 (289)
379 KOG0652 26S proteasome regulat 22.2 57 0.0012 35.2 2.1 17 279-295 206-222 (424)
380 PF03969 AFG1_ATPase: AFG1-lik 22.1 39 0.00084 37.9 0.9 18 278-295 62-79 (362)
381 TIGR00929 VirB4_CagE type IV s 22.0 35 0.00076 41.5 0.6 19 278-296 434-452 (785)
382 PRK05896 DNA polymerase III su 22.0 42 0.00091 40.1 1.2 28 268-295 27-55 (605)
383 PRK04040 adenylate kinase; Pro 22.0 39 0.00084 34.1 0.8 16 280-295 4-19 (188)
384 PF02534 T4SS-DNA_transf: Type 21.9 56 0.0012 37.2 2.2 17 279-295 45-61 (469)
385 cd03274 ABC_SMC4_euk Eukaryoti 21.9 40 0.00086 34.5 0.9 17 280-296 27-43 (212)
386 TIGR03117 cas_csf4 CRISPR-asso 21.9 58 0.0013 39.2 2.4 32 258-295 2-33 (636)
387 PRK05342 clpX ATP-dependent pr 21.8 39 0.00084 38.5 0.8 18 278-295 108-125 (412)
388 PF10186 Atg14: UV radiation r 21.6 4.2E+02 0.0091 27.8 8.7 75 626-704 26-108 (302)
389 PRK02496 adk adenylate kinase; 21.6 50 0.0011 32.5 1.5 29 281-309 4-38 (184)
390 PRK14729 miaA tRNA delta(2)-is 21.6 44 0.00095 36.5 1.2 16 280-295 6-21 (300)
391 PF07798 DUF1640: Protein of u 21.6 4.6E+02 0.01 26.1 8.4 19 688-706 81-99 (177)
392 TIGR00382 clpX endopeptidase C 21.4 39 0.00085 38.5 0.8 18 278-295 116-133 (413)
393 PRK14532 adenylate kinase; Pro 21.4 45 0.00097 32.9 1.1 16 280-295 2-17 (188)
394 COG1136 SalX ABC-type antimicr 21.4 36 0.00077 35.7 0.4 16 280-295 33-48 (226)
395 PF12126 DUF3583: Protein of u 21.4 3.7E+02 0.0081 29.4 7.9 41 644-684 41-86 (324)
396 TIGR00580 mfd transcription-re 21.4 55 0.0012 41.2 2.1 30 266-295 460-489 (926)
397 PRK04301 radA DNA repair and r 21.4 65 0.0014 35.0 2.4 29 267-295 88-119 (317)
398 PRK10078 ribose 1,5-bisphospho 21.3 39 0.00084 33.5 0.6 16 280-295 4-19 (186)
399 PF14532 Sigma54_activ_2: Sigm 21.2 40 0.00086 31.7 0.7 21 275-295 18-38 (138)
400 TIGR02231 conserved hypothetic 21.2 4.7E+02 0.01 30.5 9.7 63 642-704 85-169 (525)
401 TIGR01425 SRP54_euk signal rec 21.1 94 0.002 35.7 3.7 19 278-296 100-118 (429)
402 TIGR02639 ClpA ATP-dependent C 21.1 74 0.0016 38.9 3.1 18 279-296 485-502 (731)
403 PRK14960 DNA polymerase III su 21.0 49 0.0011 40.1 1.5 41 247-295 13-54 (702)
404 PF13094 CENP-Q: CENP-Q, a CEN 21.0 7.3E+02 0.016 24.1 9.6 26 677-702 52-77 (160)
405 PRK05986 cob(I)alamin adenolsy 20.9 32 0.00069 35.2 -0.0 27 278-304 22-48 (191)
406 cd03279 ABC_sbcCD SbcCD and ot 20.9 43 0.00093 34.0 0.9 20 278-297 28-47 (213)
407 COG3839 MalK ABC-type sugar tr 20.8 38 0.00083 37.6 0.5 15 281-295 32-46 (338)
408 TIGR01613 primase_Cterm phage/ 20.8 36 0.00079 36.7 0.3 28 268-295 63-93 (304)
409 PF00846 Hanta_nucleocap: Hant 20.8 7.5E+02 0.016 28.2 10.3 59 638-705 9-67 (428)
410 PRK10820 DNA-binding transcrip 20.7 50 0.0011 38.6 1.5 47 243-295 198-244 (520)
411 COG1162 Predicted GTPases [Gen 20.6 1.2E+02 0.0025 33.3 4.1 86 270-376 158-246 (301)
412 PRK06851 hypothetical protein; 20.6 1.1E+02 0.0024 34.4 4.1 28 269-296 21-48 (367)
413 PRK11637 AmiB activator; Provi 20.6 5.1E+02 0.011 29.4 9.5 33 672-704 95-127 (428)
414 TIGR01074 rep ATP-dependent DN 20.6 44 0.00096 40.0 1.0 18 278-295 14-31 (664)
415 PF01926 MMR_HSR1: 50S ribosom 20.6 35 0.00076 30.7 0.1 15 281-295 2-16 (116)
416 cd03240 ABC_Rad50 The catalyti 20.5 42 0.00092 34.0 0.8 17 280-296 24-40 (204)
417 PF01745 IPT: Isopentenyl tran 20.5 41 0.00088 35.3 0.6 16 280-295 3-18 (233)
418 TIGR01447 recD exodeoxyribonuc 20.4 52 0.0011 39.2 1.5 25 270-296 154-178 (586)
419 PF03668 ATP_bind_2: P-loop AT 20.4 1.2E+02 0.0025 33.1 4.0 32 280-311 3-45 (284)
420 PTZ00014 myosin-A; Provisional 20.4 88 0.0019 38.9 3.5 21 275-295 180-200 (821)
421 COG3842 PotA ABC-type spermidi 20.3 40 0.00086 37.7 0.5 13 283-295 36-48 (352)
422 KOG0336 ATP-dependent RNA heli 20.3 71 0.0015 36.5 2.4 54 239-297 212-278 (629)
423 TIGR00763 lon ATP-dependent pr 20.3 46 0.001 40.9 1.1 16 280-295 349-364 (775)
424 TIGR03238 dnd_assoc_3 dnd syst 20.3 56 0.0012 38.1 1.7 18 279-296 33-50 (504)
425 PRK04296 thymidine kinase; Pro 20.2 29 0.00063 34.8 -0.5 18 280-297 4-21 (190)
426 PRK06762 hypothetical protein; 20.2 47 0.001 32.0 0.9 16 280-295 4-19 (166)
427 PRK14951 DNA polymerase III su 20.2 49 0.0011 39.7 1.3 41 247-295 14-55 (618)
No 1
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-102 Score=845.01 Aligned_cols=601 Identities=39% Similarity=0.555 Sum_probs=470.5
Q ss_pred CchhhhcccchhcccccCCCCCCC--------CCccccCCCCCCcch---hhhhhhhcccCCCCccccCCC--CCCCCC-
Q 005116 35 GRWLQSAGLQHLQQSSATGTIPPL--------QDYNFYGGGGGGQGS---RMYRNAQRGFGGGNEFYMEPS--TPPVSS- 100 (714)
Q Consensus 35 ~rw~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 100 (714)
.+|++.++.+|...++.+...... .+|++.++. +++.+ +.+. ++|+++-.-++ ..-+ +|++.+
T Consensus 34 veW~E~~~~kgKe~~le~i~~lnp~l~~~~~~~~~~lp~~~-~~~~a~~~~~~~-~n~~i~~~~~~-~~~rs~~~tg~~~ 110 (676)
T KOG0246|consen 34 VEWVEKGETKGKELDLEEILLLNPELYSDLEHPIPNLPLKR-PASTAINRKGIE-ANRTIYESIEM-IPQRSQRATGSSC 110 (676)
T ss_pred EEhhhccccccccCCHHHHhhcChhhcccccCCCCCccccc-cccchhhhhhhh-hhhhccccccc-chhhccccccccc
Confidence 489999999999999888877766 567777762 23323 4444 67776622222 2222 443322
Q ss_pred ------CCCccCCCC-CCCCCCCCCc-cccccccc-cCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccCCcCC
Q 005116 101 ------RPSSQRKSG-EQSPNEFSPG-LLDLHSFD-TELLPEMPVPGLYDSSSLFNPVRGRSFDDSEPHIANNKQTGRAR 171 (714)
Q Consensus 101 ------~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 171 (714)
.|+...+.. |..++.+.++ ..+.|.++ +|.|.+..... ..++| ..+.+..+.-+.++...+-.+....+
T Consensus 111 ~~~~~~~P~~~~~~~~p~~~~~~~a~~~rks~~v~e~e~l~e~re~~-r~~~~-~~r~~r~~~~~~d~~npn~e~~~mi~ 188 (676)
T KOG0246|consen 111 KRLETALPSQRIFPPQPKSTGTAAAASARKSHAVKEVEKLQEQREKR-REPSP-RMRSRRKSAQDVDPSNPNWEFAQMIR 188 (676)
T ss_pred ccccccCCcccCCCCCCcccccchhhhhhhcccccchHHHHHHHHHh-hccCc-cccccchhhcccCCCCCchHHHHHHH
Confidence 455555555 8889999998 88999999 99998877766 67777 55544433333332221111111111
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCeEEEEEeCCCCchhhhcCCCCeEEE-cCCeEEEecccccccccccccceeEEeee
Q 005116 172 GLPENNLLKSFAADKEKANASSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDLTEYVEKHEFVFDA 250 (714)
Q Consensus 172 ~~p~~~~~~~~~~~~e~~~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~kv~~~~~~~~~~F~FD~ 250 (714)
.-...--..++. . ..+...++|+||||+||++++|....+.++|++ ..+.++||+|+.+||++.|++++.|.||+
T Consensus 189 ~~r~~L~~~pls-~---~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDy 264 (676)
T KOG0246|consen 189 EYREQLDSSPLS-M---GDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDY 264 (676)
T ss_pred HHhhhhcccccc-c---CCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEee
Confidence 111110000000 1 123467899999999999999999999999999 56899999999999999999999999999
Q ss_pred ecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc------------CCChhhHHHHHHHHhh-hccCc
Q 005116 251 VLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKASRDILRLMHH-TYRSQ 317 (714)
Q Consensus 251 VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------------Gl~~~a~~dIf~~i~~-~~~~~ 317 (714)
+||+.++|+.||+.+++|||+.+|+|..+||||||||||||||||. |++..+++|+|..+.. .|...
T Consensus 265 aFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~ 344 (676)
T KOG0246|consen 265 AFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKL 344 (676)
T ss_pred ecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhc
Confidence 9999999999999999999999999999999999999999999994 5888999999999988 88889
Q ss_pred ceEEEEEEEEEeCCeeecccCCcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeE
Q 005116 318 GFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAI 397 (714)
Q Consensus 318 ~~~V~vS~~EIYnE~v~DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaI 397 (714)
++.|++||||||+++|||||+++++|+++||++++|+|+||+|..|.+++|++++|+.|++.|+++.|.+|..|||||+|
T Consensus 345 ~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 345 DLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred ceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccc
Q 005116 398 LQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLT 477 (714)
Q Consensus 398 f~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLT 477 (714)
|+|.++.. .....+||++||||||+||+++++.+++++++||++|||||+||++||+||.+++.|+|||.||||
T Consensus 425 fQIilr~~------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLT 498 (676)
T KOG0246|consen 425 FQIILRKH------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLT 498 (676)
T ss_pred EeeeeecC------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHH
Confidence 99999864 225789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCC-cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc-ccccccccccccccCCCCCCCCCCCCCC
Q 005116 478 EVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK-DILSSTINLKESTTAPLSSALPTTSPYE 555 (714)
Q Consensus 478 rLLrdsLgG-nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~-~~~~~~~~l~e~~~~~~~~~~~~~~~~e 555 (714)
++|||||.| |++||||+||||+..+|++||||||||+|+|++.....+.. .+. +.....+..
T Consensus 499 qVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~~~~~~~------------~~~~~~p~~---- 562 (676)
T KOG0246|consen 499 QVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGPSGRMPR------------AIGEETPNS---- 562 (676)
T ss_pred HHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCccccCcc------------cccCCCccc----
Confidence 999999999 99999999999999999999999999999999976554311 000 000000000
Q ss_pred CCCCCCCcCCcCcccccCcCCcchhhhhhhcccCcccCCCCcchhhcCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHH
Q 005116 556 DDTDAWPEQNERDDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQE 635 (714)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilee 635 (714)
+.. +..+. .+. +.... ++. .. . ..+......++-+.
T Consensus 563 ~~~----------------s~~~~-~~~----------~~~~~-~~~---~~-------e------~~~~~~~~~~~~~~ 598 (676)
T KOG0246|consen 563 DPE----------------SNSET-QPL----------NPSRD-EEP---SS-------E------PNEENSEREEASEH 598 (676)
T ss_pred cch----------------hcccc-CCC----------Ccccc-ccc---cc-------C------ccccccchhhhhhh
Confidence 000 00000 000 00000 000 00 0 00001233334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005116 636 EEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLV 710 (714)
Q Consensus 636 ee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee~l~ 710 (714)
++.++..++..+.....|++-+..+..+.+.+.+|++-+..+.+.+|++|++.+..||.++..+...+.+|+-++
T Consensus 599 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 599 REVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 677888888888888888887666666778999999999999999999999999999999999999999888664
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-81 Score=726.62 Aligned_cols=449 Identities=31% Similarity=0.493 Sum_probs=347.3
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
...+|+|+|||||++.+|.......+|.+++ ..|.|... +....-.+.|+||+||+|++.|++||..++.|+|
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-----~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i 121 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-----IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPII 121 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-----cccccccceeecceeeCcchhHHHHHHHHHHHHH
Confidence 4568999999999999999998888888876 33555432 1122245789999999999999999999999999
Q ss_pred HHHhcCCceEEEeeccCCCCCcccccC--------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMKP--------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDL 336 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~G--------------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DL 336 (714)
+.|+.|||||||||||||+||||||.| ++||++.+||..+... +..|+|.|||+|+|||.|+||
T Consensus 122 ~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DL 199 (1041)
T KOG0243|consen 122 KEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDL 199 (1041)
T ss_pred HHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHh
Confidence 999999999999999999999999975 7899999999999763 468999999999999999999
Q ss_pred cCCc----ccceeEe-----cCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecC
Q 005116 337 LSDR----KKLCMRE-----DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSAD 407 (714)
Q Consensus 337 L~~~----~~l~ire-----d~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~ 407 (714)
|++. +.+.+.. |.+++|+|+||.++.|.++.|++++|.+|.+.|++++|.||..|||||+||+|+|.....
T Consensus 200 La~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 200 LASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred cCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 9753 3344433 568899999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCc
Q 005116 408 GSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGN 487 (714)
Q Consensus 408 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGn 487 (714)
......-...|||+||||||||-....++.++ +.+|+..||+||++||+||+||..+..|||||+|||||||||||||.
T Consensus 280 t~~geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGk 358 (1041)
T KOG0243|consen 280 TPEGEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGK 358 (1041)
T ss_pred CCcchhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCC
Confidence 55555567889999999999999888887777 56699999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCcCCcC
Q 005116 488 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYEDDTDAWPEQNER 567 (714)
Q Consensus 488 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 567 (714)
++|||||||||+..+.+|||+||.||.|||+|+++|.++.......+ +++
T Consensus 359 TKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~l-lKd----------------------------- 408 (1041)
T KOG0243|consen 359 TKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTL-LKD----------------------------- 408 (1041)
T ss_pred ceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHH-HHH-----------------------------
Confidence 99999999999999999999999999999999999988754433221 110
Q ss_pred cccccCcCCcchhhhhhhcccCcccCCCCcchhhcCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 005116 568 DDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQEEEDLVNAHRKQV 647 (714)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ileeee~~~~~hr~~i 647 (714)
| ..|-++++... -..+.++.+-... +.-...+.........|++.+.-+.+-++.|
T Consensus 409 --~-----~~EIerLK~dl-------------~AaReKnGvyise----e~y~~~e~e~~~~~~~ieele~el~~~~~~l 464 (1041)
T KOG0243|consen 409 --L-----YEEIERLKRDL-------------AAAREKNGVYISE----ERYTQEEKEKKEMAEQIEELEEELENLEKQL 464 (1041)
T ss_pred --H-----HHHHHHHHHHH-------------HHhHhhCceEech----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111000 0000011100000 0000000112233444455444445555555
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005116 648 EDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLV 710 (714)
Q Consensus 648 e~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee~l~ 710 (714)
.+.-+..-.+- ..-..+.+-...|++.|..+...+..+++++.+.+..|+++|.+.
T Consensus 465 ~~~~e~~~~~~-------~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii 520 (1041)
T KOG0243|consen 465 KDLTELYMNQL-------EIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII 520 (1041)
T ss_pred HHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444332111 111233455677889999999999999999999999998887664
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-81 Score=698.95 Aligned_cols=335 Identities=39% Similarity=0.545 Sum_probs=301.6
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
...+|+|+||+||++..+.......++.++. ..+.+..+.... ....+.|+||+||+++++|++||..++.|+|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGI----EGKPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccc----cCCCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 4568999999999999998888887777765 344454443222 2234569999999999999999999999999
Q ss_pred HHHhcCCceEEEeeccCCCCCcccccC-------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCcc--
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMKP-------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK-- 341 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~G-------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~-- 341 (714)
++|++|||+||||||||||||||||.| ++|+++..||..|........|.|+|||+|||||.|+|||++..
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~ 158 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPK 158 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcC
Confidence 999999999999999999999999975 78999999999999876666899999999999999999998754
Q ss_pred cceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEE
Q 005116 342 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 421 (714)
Q Consensus 342 ~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~ 421 (714)
.+.++++++.||||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+..............|||+
T Consensus 159 ~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 159 GLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred CceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 89999999999999999999999999999999999999999999999999999999999999854444445567889999
Q ss_pred EEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCCccccccccccCCcceeEEEEecCCCC
Q 005116 422 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 500 (714)
Q Consensus 422 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~-hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 500 (714)
|||||||||..++++. +.+.+|+.+||+||++||+||.||.++++ ||||||||||+||||||||||+|+|||||+|+.
T Consensus 239 lvDLagsEr~~~tga~-G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~ 317 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAE-GERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSS 317 (574)
T ss_pred eeeccchhhhcccCcc-chhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchh
Confidence 9999999998776654 56788999999999999999999998877 999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhccccCCCCCcccccc
Q 005116 501 GCCEHTLNTLRYADRVKSLSKGNNPKKDILSS 532 (714)
Q Consensus 501 ~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~ 532 (714)
.+++|||+|||||+|||.|++.+.++.++.-.
T Consensus 318 ~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~ 349 (574)
T KOG4280|consen 318 DNYEETLSTLRFAQRAKAIKNKPVINEDPKDA 349 (574)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccccCCcchh
Confidence 99999999999999999999999999988743
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-79 Score=700.08 Aligned_cols=334 Identities=33% Similarity=0.502 Sum_probs=301.3
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHhh
Q 005116 194 VAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRETV 266 (714)
Q Consensus 194 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~v 266 (714)
...|+|+|||||||.+|..++..++|.+.+++++|..++... +.+.|+||+.|+.. ++|..||+.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k------~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg 76 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK------DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLG 76 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc------cCCceecceeeecCCCCCCchhhHHHHHHHHh
Confidence 356999999999999999999999999999988887665322 33459999999654 58999999999
Q ss_pred hhhHHHHhcCCceEEEeeccCCCCCcccccC--------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCCeeeccc
Q 005116 267 EPIVPIIFQRTKATCFAYGQTGSGKTYTMKP--------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLL 337 (714)
Q Consensus 267 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G--------l~~~a~~dIf~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL 337 (714)
.++++++|+|||+||||||||||||||||+| |+|+.+.++|..+.. ..++..|.|.|||+|||||+|+|||
T Consensus 77 ~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 77 REMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred HHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 9999999999999999999999999999975 779999999999987 4556789999999999999999999
Q ss_pred C-C--cccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCC-CC
Q 005116 338 S-D--RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSES-KP 413 (714)
Q Consensus 338 ~-~--~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~-~~ 413 (714)
+ + +..|++||.+.-|+||.+|+.+.|+|+.|+..+|+.|++.|++++|+||+.|||||+||+|.+.+.....+. ..
T Consensus 157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~ 236 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD 236 (1221)
T ss_pred hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence 8 4 567999999999999999999999999999999999999999999999999999999999999887554443 34
Q ss_pred CeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCCCCCCccccccccccCC
Q 005116 414 PRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-------GHIPFRGSKLTEVLRDSFVG 486 (714)
Q Consensus 414 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-------~hIPyRdSKLTrLLrdsLgG 486 (714)
...+|||+|||||||||... .++.+++.+||++|||||++||+||.||+..+ .+||||||.||||||+.|||
T Consensus 237 sek~SKIsLVDLAGSERass-tGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGG 315 (1221)
T KOG0245|consen 237 SEKVSKISLVDLAGSERASS-TGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGG 315 (1221)
T ss_pred ceeeeeeeEEeccCcccccc-cCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCC
Confidence 67889999999999999655 45566788899999999999999999996533 38999999999999999999
Q ss_pred cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccccc
Q 005116 487 NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTI 534 (714)
Q Consensus 487 nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~~~ 534 (714)
||||+|||+|||+..+|+|||+|||||+|||+|++++.++.|+-..-+
T Consensus 316 NSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLI 363 (1221)
T KOG0245|consen 316 NSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLI 363 (1221)
T ss_pred cchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHH
Confidence 999999999999999999999999999999999999999998866554
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.2e-77 Score=649.17 Aligned_cols=323 Identities=40% Similarity=0.615 Sum_probs=292.9
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccc-----cccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDL-----TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~-----~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
+|+|||||||++++|...+...+|.+.++.+.+..+...... ......+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999998999999887766555555433221 233456899999999999999999999999999
Q ss_pred HHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCC-cccc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKL 343 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l 343 (714)
+++++|||+||||||||||||||||+| +.++++.+||..+........|.|++||+|||||+|+|||++ .+++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999975 789999999999988666788999999999999999999987 6889
Q ss_pred eeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEE
Q 005116 344 CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 423 (714)
Q Consensus 344 ~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fV 423 (714)
.+++|++++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+.............|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987655333456788999999
Q ss_pred ECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCCCCCccccccccccCCcceeEEEEecCCCC
Q 005116 424 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 500 (714)
Q Consensus 424 DLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 500 (714)
|||||||..++.. .+.+.+|++.||+||++|++||.+|..++ .|||||+||||+||+|+|||||+|+||+||||+.
T Consensus 241 DLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 241 DLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred ECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 9999999776654 45667799999999999999999999887 8999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhcc
Q 005116 501 GCCEHTLNTLRYADRVKSL 519 (714)
Q Consensus 501 ~~~eETLsTLrfA~Rak~i 519 (714)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-76 Score=637.10 Aligned_cols=315 Identities=66% Similarity=1.005 Sum_probs=297.0
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 273 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~v 273 (714)
.+|+|+|||||++..|...++.+++.+.++ ++++++++.+++.....+.+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999998888888888775 8999988887777666668899999999999999999999999999999
Q ss_pred hcCCceEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCcccceeEe
Q 005116 274 FQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMRE 347 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~ire 347 (714)
++|+|+||||||||||||||||+ |+.++++.+||..+.... ..|.|++||+|||+|+++|||++.+++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCccceeEEE
Confidence 99999999999999999999998 799999999999987643 6799999999999999999999999999999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005116 348 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 427 (714)
Q Consensus 348 d~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAG 427 (714)
++.++++|.|++++.|.|++|++++|+.|.++|.++.|.+|..|||||+||+|+|.+... ....|+|+||||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAG 232 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAG 232 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCC
Confidence 999999999999999999999999999999999999999999999999999999987643 45689999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcceeEEEEecCCCCCChHhHH
Q 005116 428 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTL 507 (714)
Q Consensus 428 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETL 507 (714)
|||..++....+++..|+..||+||++|++||.+|..++.|||||+||||+||+|+|+|||+|+||+||||+..+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99988887777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 005116 508 NTLRYADRVK 517 (714)
Q Consensus 508 sTLrfA~Rak 517 (714)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.3e-76 Score=688.09 Aligned_cols=324 Identities=35% Similarity=0.520 Sum_probs=282.7
Q ss_pred cCCCCCCCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhh
Q 005116 189 ANASSVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEP 268 (714)
Q Consensus 189 ~~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~p 268 (714)
.+.....+|+|||||||++..|. +...++.+.++.+++. .+.|.||+||+++++|++||+.++.|
T Consensus 92 en~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~P 156 (1320)
T PLN03188 92 ENGVSDSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAP 156 (1320)
T ss_pred cccCCCCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHH
Confidence 34345679999999999998763 3334444455665552 35799999999999999999999999
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccccC----------------CChhhHHHHHHHHhhh-----ccCcceEEEEEEEE
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMKP----------------LPLKASRDILRLMHHT-----YRSQGFQLFVSFFE 327 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~G----------------l~~~a~~dIf~~i~~~-----~~~~~~~V~vS~~E 327 (714)
||+.+++|||+||||||||||||||||+| +.++++.+||..+... .....|.|+|||+|
T Consensus 157 LV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLE 236 (1320)
T PLN03188 157 LVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLE 236 (1320)
T ss_pred HHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEe
Confidence 99999999999999999999999999975 5688999999988642 23457999999999
Q ss_pred EeCCeeecccCCc-ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEec
Q 005116 328 IYGGKLFDLLSDR-KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSA 406 (714)
Q Consensus 328 IYnE~v~DLL~~~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~ 406 (714)
||||+|||||++. +.+.|++|++++++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|.|.+..
T Consensus 237 IYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~ 316 (1320)
T PLN03188 237 IYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRC 316 (1320)
T ss_pred eecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEee
Confidence 9999999999875 579999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCC-CCCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCCCCCcccccc
Q 005116 407 DGS-ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN-----DQGHIPFRGSKLTEVL 480 (714)
Q Consensus 407 ~~~-~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~-----~~~hIPyRdSKLTrLL 480 (714)
... ........|+|+|||||||||...++. .+.+.+|+..||+||++|++||.+|.. +..|||||+||||+||
T Consensus 317 k~~~dg~ss~r~SkLnLVDLAGSER~kkTga-~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLL 395 (1320)
T PLN03188 317 KSVADGLSSFKTSRINLVDLAGSERQKLTGA-AGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLL 395 (1320)
T ss_pred cccCCCCcceEEEEEEEEECCCchhccccCc-ccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHH
Confidence 221 222345689999999999999877654 456677999999999999999999974 3579999999999999
Q ss_pred ccccCCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcc
Q 005116 481 RDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKD 528 (714)
Q Consensus 481 rdsLgGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~ 528 (714)
||+|||||+|+||+||||+..+++||++||+||+|||+|++.+.++..
T Consensus 396 QDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 396 QESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred HHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 999999999999999999999999999999999999999998877654
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=9.5e-76 Score=634.01 Aligned_cols=313 Identities=37% Similarity=0.526 Sum_probs=275.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 273 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~v 273 (714)
++|+|+|||||++..|...+...++...+ +.+.++.. ..+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~ 70 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDC 70 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999998666666665543 44444321 14689999999999999999999999999999
Q ss_pred hcCCceEEEeeccCCCCCcccccC--------------CChhhHHHHHHHHhhh----ccCcceEEEEEEEEEeCCeeec
Q 005116 274 FQRTKATCFAYGQTGSGKTYTMKP--------------LPLKASRDILRLMHHT----YRSQGFQLFVSFFEIYGGKLFD 335 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM~G--------------l~~~a~~dIf~~i~~~----~~~~~~~V~vS~~EIYnE~v~D 335 (714)
++|||+||||||||||||||||+| +.++++.+||..+... .....|.|++||+|||||+|||
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~D 150 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITD 150 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeee
Confidence 999999999999999999999976 4578888999887643 1345789999999999999999
Q ss_pred ccCCc-ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCC
Q 005116 336 LLSDR-KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPP 414 (714)
Q Consensus 336 LL~~~-~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~ 414 (714)
||++. ..+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|.|.+...... ...
T Consensus 151 LL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-~~~ 229 (337)
T cd01373 151 LLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-STN 229 (337)
T ss_pred CCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC-CCc
Confidence 99865 5799999999999999999999999999999999999999999999999999999999999987643322 224
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC----CCCCCCCCCCccccccccccCCccee
Q 005116 415 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN----DQGHIPFRGSKLTEVLRDSFVGNSRT 490 (714)
Q Consensus 415 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~----~~~hIPyRdSKLTrLLrdsLgGnsrT 490 (714)
...|+|+|||||||||..+++. .+.+..|+..||+||++|++||.+|.. +..|||||+||||+||+|+|+|||+|
T Consensus 230 ~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t 308 (337)
T cd01373 230 IRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKT 308 (337)
T ss_pred EEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceE
Confidence 5679999999999999877654 456778999999999999999999974 46899999999999999999999999
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHhhcc
Q 005116 491 VMISCISPSSGCCEHTLNTLRYADRVKSL 519 (714)
Q Consensus 491 ~mIa~ISP~~~~~eETLsTLrfA~Rak~i 519 (714)
+||+||||+..+++||++||+||+|||.|
T Consensus 309 ~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 309 TIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.8e-75 Score=633.67 Aligned_cols=316 Identities=32% Similarity=0.548 Sum_probs=282.9
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEc-CCeEEEecccccccc----cccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETY-SNSLTVHETKLKVDL----TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 269 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~-~~~v~v~~~~~kv~~----~~~~~~~~F~FD~VF~~~asQeeVy~~~v~pl 269 (714)
.+|+|||||||++..|...+...+|.+. ++++.++.|...... ......+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999999999887778787764 478888877653322 22345689999999999999999999999999
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc---
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR--- 340 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~--- 340 (714)
|+.+++|+|+||||||||||||||||+| +.++++.+||..+.. |.|+|||+|||||+|||||++.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~ 154 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSS 154 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcccc
Confidence 9999999999999999999999999976 788999999998865 9999999999999999999753
Q ss_pred ----ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCC-----C
Q 005116 341 ----KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE-----S 411 (714)
Q Consensus 341 ----~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~-----~ 411 (714)
+++.+++|++++++|.|++++.|.+++|++++|..|.++|.++.|.+|..|||||+||+|+|.+...... .
T Consensus 155 ~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 234 (345)
T cd01368 155 TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD 234 (345)
T ss_pred ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccC
Confidence 3689999999999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred CCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCCCCCCccccccccccC
Q 005116 412 KPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------DQGHIPFRGSKLTEVLRDSFV 485 (714)
Q Consensus 412 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~------~~~hIPyRdSKLTrLLrdsLg 485 (714)
......|+|+|||||||||..++. ..+.+.+|+..||+||++|++||++|.. +..|||||+||||+||+|+|+
T Consensus 235 ~~~~~~s~l~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 235 KDQITVSQLSLVDLAGSERTSRTQ-NTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCceEEEEEEEEeccccccccccc-ccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 245678999999999999988774 4556778999999999999999999986 468999999999999999999
Q ss_pred CcceeEEEEecCCCCCChHhHHHHHHHHHHhh
Q 005116 486 GNSRTVMISCISPSSGCCEHTLNTLRYADRVK 517 (714)
Q Consensus 486 GnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak 517 (714)
|||+|+||+||||+..+++||++||+||.+|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.5e-76 Score=647.33 Aligned_cols=326 Identities=37% Similarity=0.531 Sum_probs=293.4
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
.+..|+|+||+||++..|...+...+..+.+ +++.+... + +...|.||+||.|+++|++||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-------~--~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-------K--ETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-------c--ccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 5678999999999999999888877766655 33333221 1 33789999999999999999999999999
Q ss_pred HHHhcCCceEEEeeccCCCCCccccc---------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCC-c
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMK---------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-R 340 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~---------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~ 340 (714)
++||.|||+||||||||||||||||. |+.|+.+.+||..|.....+..|.|.|||||||+|+++|||++ +
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k 155 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK 155 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc
Confidence 99999999999999999999999995 4778999999999998877889999999999999999999997 4
Q ss_pred ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005116 341 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 420 (714)
Q Consensus 341 ~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL 420 (714)
.++.+++|.+..++|+|++++.|.++++++++|+.|..+|.++.|+||.+|||||+||+|+|++..... .....|||
T Consensus 156 ~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkL 232 (607)
T KOG0240|consen 156 TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKL 232 (607)
T ss_pred CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccE
Confidence 679999999999999999999999999999999999999999999999999999999999999875433 45688999
Q ss_pred EEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCccccccccccCCcceeEEEEecCCC
Q 005116 421 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND-QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 499 (714)
Q Consensus 421 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 499 (714)
.||||||||+..++++ .+....|+++||+||.|||+||+||+.+ ..|||||||||||||||+|||||||.+|+|++|+
T Consensus 233 yLVDLaGSEkvsKtga-~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPs 311 (607)
T KOG0240|consen 233 YLVDLAGSEKVSKTGA-EGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 311 (607)
T ss_pred EEEEcccccccCCCCc-cchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCc
Confidence 9999999999777654 5667789999999999999999999988 7899999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhhccccCCCCCccccc
Q 005116 500 SGCCEHTLNTLRYADRVKSLSKGNNPKKDILS 531 (714)
Q Consensus 500 ~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~ 531 (714)
..+..||.+||+|++|||.|++....+.....
T Consensus 312 s~n~~ET~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 312 SLNEAETKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred cccccccccchhhccccccccchhhhhhHhhH
Confidence 99999999999999999999876665544333
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6e-74 Score=624.18 Aligned_cols=328 Identities=34% Similarity=0.506 Sum_probs=295.7
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHhhh
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRETVE 267 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~v~ 267 (714)
++|+|+||+||++..|...++..++.+.++.+++..+.... ........|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999998775321 223356789999999999 999999999999
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCCeeecccCCc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSDR 340 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~~ 340 (714)
|+|+.+++|+|+||||||||||||||||+| +.++++.+||..+..... ...|.|+|||+|||+|+|||||++.
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 999999999999999999999999999975 688999999999987433 5679999999999999999999876
Q ss_pred ----ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCC-CCCCe
Q 005116 341 ----KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSE-SKPPR 415 (714)
Q Consensus 341 ----~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~-~~~~~ 415 (714)
..+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... .....
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~ 238 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTE 238 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCce
Confidence 4789999999999999999999999999999999999999999999999999999999999987654321 23456
Q ss_pred eEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCCCCCccccccccccCCc
Q 005116 416 LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--------QGHIPFRGSKLTEVLRDSFVGN 487 (714)
Q Consensus 416 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--------~~hIPyRdSKLTrLLrdsLgGn 487 (714)
..|+|+|||||||||..+++.. +.+..|+..||+||++|++||.+|... +.|||||+||||+||+|+|+||
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~-~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~ 317 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAE-GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGN 317 (356)
T ss_pred EEEEEEeeeccccccccccccc-chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCC
Confidence 7899999999999998776544 566779999999999999999999753 4899999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCC
Q 005116 488 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNP 525 (714)
Q Consensus 488 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~ 525 (714)
|+|+||+||||+..+++||++||+||.|+++|++.|..
T Consensus 318 s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 318 SKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999999999999988754
No 12
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-75 Score=670.73 Aligned_cols=325 Identities=40% Similarity=0.601 Sum_probs=286.3
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 274 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl 274 (714)
.+|.|+||+||++.+|...+..+.+.+.++...+....... ........|.||+||+++++|++||+.+++|||.+|+
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSL--PEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccc--cccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 57999999999999977767766666666554443221111 0111147899999999999999999999999999999
Q ss_pred cCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCccc-ceeEe
Q 005116 275 QRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK-LCMRE 347 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~-l~ire 347 (714)
.|+|+||||||||||||||||.| +.++++.+||..|.+.. ...|.|.|||+|||||.|+|||++... +.++|
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 99999999999999999999976 56899999999998855 778999999999999999999997654 99999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005116 348 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 427 (714)
Q Consensus 348 d~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAG 427 (714)
|+.++++|.||++..|.|.++++.+|..|.++|+++.|.+|..|||||+||+|.|........ . ..++|+||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAG 238 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAG 238 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998754433 1 678999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005116 428 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 505 (714)
Q Consensus 428 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 505 (714)
|||...++ +.+.+++||++||+||++||+||++|..+ ..||||||||||||||++|||||+|+|||||+|+..+++|
T Consensus 239 SERas~T~-~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 239 SERASRTG-NEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhh-ccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99966655 44566789999999999999999999887 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCc
Q 005116 506 TLNTLRYADRVKSLSKGNNPKK 527 (714)
Q Consensus 506 TLsTLrfA~Rak~i~~~~~~~~ 527 (714)
|.+||+||+|||+|++....+.
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~ 339 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNV 339 (675)
T ss_pred HHHHHHHHHHhhhcccccccce
Confidence 9999999999999988776553
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.4e-72 Score=608.29 Aligned_cols=319 Identities=39% Similarity=0.593 Sum_probs=287.6
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEc--CCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETY--SNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 272 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~--~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~ 272 (714)
.+|+|+||+||++..|...++..++.++ ...+.++.+... .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 3799999999999999988888888775 367777766532 1235678999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCcc--
Q 005116 273 IFQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRK-- 341 (714)
Q Consensus 273 vl~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~-- 341 (714)
+++|+|+||||||||||||||||+| +.++++.+||..+.... ...|.|+|||+|||+|+|+|||++..
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 155 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQKK 155 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCCCC
Confidence 9999999999999999999999976 67899999999887643 36799999999999999999998754
Q ss_pred cceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEE
Q 005116 342 KLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 421 (714)
Q Consensus 342 ~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~ 421 (714)
.+.+++++.++++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|++.............|+|+
T Consensus 156 ~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~ 235 (333)
T cd01371 156 KLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLN 235 (333)
T ss_pred ceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999876544334556789999
Q ss_pred EEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCCccccccccccCCcceeEEEEecCCCC
Q 005116 422 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG-HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 500 (714)
Q Consensus 422 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~-hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 500 (714)
|||||||||..+++. .+.+..|+..||+||.+|++||++|.+++. |||||+||||+||+|+|+|||+|+||+||+|..
T Consensus 236 ~VDLAGsEr~~~~~~-~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~ 314 (333)
T cd01371 236 LVDLAGSERQSKTGA-TGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 314 (333)
T ss_pred EEECCCCCcccccCC-chhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcc
Confidence 999999999777654 456677999999999999999999998876 999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhcc
Q 005116 501 GCCEHTLNTLRYADRVKSL 519 (714)
Q Consensus 501 ~~~eETLsTLrfA~Rak~i 519 (714)
.+++||++||+||+|+|+|
T Consensus 315 ~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 315 YNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.5e-72 Score=610.52 Aligned_cols=325 Identities=36% Similarity=0.544 Sum_probs=289.2
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 272 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~ 272 (714)
.+|+|+||+||+...|...+...++.+.+ +.+.+..+.. .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999998888888888854 4555543321 2235678999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCCcccccC-----------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeec
Q 005116 273 IFQRTKATCFAYGQTGSGKTYTMKP-----------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFD 335 (714)
Q Consensus 273 vl~G~N~tvfAYGqTGSGKTyTM~G-----------------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~D 335 (714)
+++|+|+||||||||||||||||+| +.++++.+||..+... ...|.|++||+|||+|+|+|
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeee
Confidence 9999999999999999999999965 5677888888888764 56799999999999999999
Q ss_pred ccCCc----ccceeEec--CCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCC
Q 005116 336 LLSDR----KKLCMRED--GKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS 409 (714)
Q Consensus 336 LL~~~----~~l~ired--~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~ 409 (714)
||++. +++.++++ ..++++|.|++++.|.+++|++++|+.|.++|.++.|.+|..|||||+||+|.|.+.....
T Consensus 155 LL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~ 234 (352)
T cd01364 155 LLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI 234 (352)
T ss_pred CCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC
Confidence 99864 57999999 5889999999999999999999999999999999999999999999999999998865443
Q ss_pred CCCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcce
Q 005116 410 ESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSR 489 (714)
Q Consensus 410 ~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsr 489 (714)
........|+|+||||||+||..+.+.. +.+..|+..||+||.+|++||.+|..++.|||||+||||+||+|+|+|||+
T Consensus 235 ~~~~~~~~s~l~~VDLAGsE~~~~~~~~-~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 235 SGEELVKIGKLNLVDLAGSENIGRSGAE-NKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCccEEEEEEEEEECCCccccccccCc-chhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 3334456899999999999997665544 456679999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc
Q 005116 490 TVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK 527 (714)
Q Consensus 490 T~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~ 527 (714)
|+||+||||+..+++||++||+||+|+++|++.|..+.
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999987654
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.1e-72 Score=601.77 Aligned_cols=311 Identities=43% Similarity=0.638 Sum_probs=284.1
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 274 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl 274 (714)
+|+|+||+||++..|.. ++.+++.+.++ ++++..+ .....|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l 70 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSAL 70 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999874 56677777665 6666543 2468899999999999999999999999999999
Q ss_pred cCCceEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc-ccceeEe
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR-KKLCMRE 347 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-~~l~ire 347 (714)
+|+|+||||||||||||||||+ |+.++++.+||..+.... ...|.|++||+|||||+|||||++. +.+.+++
T Consensus 71 ~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~ 149 (321)
T cd01374 71 EGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELRIRE 149 (321)
T ss_pred CCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCceEEE
Confidence 9999999999999999999998 688999999999987643 5689999999999999999999987 8899999
Q ss_pred cCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCC
Q 005116 348 DGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAG 427 (714)
Q Consensus 348 d~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAG 427 (714)
++.++++|.|++++.|.+++|+..+|+.|.++|.++.|.+|..|||||+||+|+|.+.............|+|+||||||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999876544333566789999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005116 428 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 505 (714)
Q Consensus 428 SER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~--~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 505 (714)
+||..+.+ .+.+..|+..||+||.+|++||++|..++ .|||||+||||+||+|+|+|||+|+||+||||...+++|
T Consensus 230 sE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (321)
T cd01374 230 SERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEE 307 (321)
T ss_pred CCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99987776 45667799999999999999999999986 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 005116 506 TLNTLRYADRVKSL 519 (714)
Q Consensus 506 TLsTLrfA~Rak~i 519 (714)
|++||+||+|+|+|
T Consensus 308 Tl~TL~~a~r~~~i 321 (321)
T cd01374 308 TLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=6.5e-72 Score=601.00 Aligned_cols=312 Identities=40% Similarity=0.587 Sum_probs=284.5
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcCC-eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 273 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~-~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~v 273 (714)
.+|+|+|||||++..|...+...++.+.++ ++++..+ ...+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~---------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~ 72 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS---------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDV 72 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC---------CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999987788888888664 6766654 256789999999999999999999999999999
Q ss_pred hcCCceEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCC-cccc
Q 005116 274 FQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKL 343 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l 343 (714)
++|+|+||||||||||||||||+| +.++++.+||..+........|.|++||+|||+|+++|||++ +..+
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l 152 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNL 152 (325)
T ss_pred HcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCc
Confidence 999999999999999999999965 667999999999987766678999999999999999999987 4679
Q ss_pred eeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEE
Q 005116 344 CMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 423 (714)
Q Consensus 344 ~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fV 423 (714)
.+++++.++++|.|++++.|.|++|++.+|..|.++|+++.|.+|..|||||+||+|+|.+.... ......|+|+||
T Consensus 153 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~---~~~~~~s~l~~V 229 (325)
T cd01369 153 QVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE---TGSKKRGKLFLV 229 (325)
T ss_pred eEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---CCCEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 234678999999
Q ss_pred ECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005116 424 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 502 (714)
Q Consensus 424 DLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 502 (714)
||||+||..+++ ..+.+..|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+||+||||+..+
T Consensus 230 DLAGsE~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~ 308 (325)
T cd01369 230 DLAGSEKVSKTG-AEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYN 308 (325)
T ss_pred ECCCCCcccccC-CcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCcccc
Confidence 999999976654 445667799999999999999999999887 999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 005116 503 CEHTLNTLRYADRVKSL 519 (714)
Q Consensus 503 ~eETLsTLrfA~Rak~i 519 (714)
++||++||+||+|+|+|
T Consensus 309 ~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 309 ESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.5e-71 Score=595.39 Aligned_cols=306 Identities=36% Similarity=0.567 Sum_probs=274.2
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEE-cC-----CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIET-YS-----NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 269 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~-~~-----~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~pl 269 (714)
+|+|+|||||+.+.|. +...++.+ +. .++.+..+.. ..+.+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN------RGETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC------CCCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 5899999999998883 33444444 33 3666665531 235678999999999999999999999999
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCC-ccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKK 342 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~ 342 (714)
|+.+++|+|+||||||||||||||||+ |+.++++.+||..+... ...+.|++||+|||+|+|+|||++ ...
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKKE 150 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCCC
Confidence 999999999999999999999999996 58899999999988653 367999999999999999999987 578
Q ss_pred ceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEE
Q 005116 343 LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSF 422 (714)
Q Consensus 343 l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~f 422 (714)
+.+++++.++++|.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|.|.+.... ....|+|+|
T Consensus 151 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~ 225 (319)
T cd01376 151 LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNL 225 (319)
T ss_pred ceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999876432 357899999
Q ss_pred EECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005116 423 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 502 (714)
Q Consensus 423 VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 502 (714)
||||||||...+. ..+.+..|+..||+||++|++||.+|..+..|||||+||||+||+|+|+|||+|+||+||||...+
T Consensus 226 VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~ 304 (319)
T cd01376 226 IDLAGSEDNRRTG-NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSF 304 (319)
T ss_pred EECCCCCcccccC-CccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhh
Confidence 9999999966654 445667799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhh
Q 005116 503 CEHTLNTLRYADRVK 517 (714)
Q Consensus 503 ~eETLsTLrfA~Rak 517 (714)
++|||+||+||+|+|
T Consensus 305 ~~eTl~TL~fa~r~~ 319 (319)
T cd01376 305 YQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3e-71 Score=598.31 Aligned_cols=315 Identities=35% Similarity=0.505 Sum_probs=279.3
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccc--cccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDL--TEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 273 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~--~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~v 273 (714)
+|||+||+||+...+. ....+..++..++++.|+..... ....+.+.|.||+||++ ++|++||+.+++|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 5899999999987332 22233345578888888765443 34556788999999999 999999999999999999
Q ss_pred hcCCceEEEeeccCCCCCcccccC---------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc----
Q 005116 274 FQRTKATCFAYGQTGSGKTYTMKP---------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR---- 340 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM~G---------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---- 340 (714)
++|+|+||||||||||||||||+| +.++++.+||..+... .+..|.|++||+|||||++||||++.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 999999999999999999999965 7789999999998753 45679999999999999999999876
Q ss_pred ---ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeE
Q 005116 341 ---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLV 417 (714)
Q Consensus 341 ---~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~ 417 (714)
+.+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... ......
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~ 234 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRL 234 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEE
Confidence 5789999999999999999999999999999999999999999999999999999999999998643322 235678
Q ss_pred EEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCCCCccccccccccCCcceeEEEEec
Q 005116 418 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ-GHIPFRGSKLTEVLRDSFVGNSRTVMISCI 496 (714)
Q Consensus 418 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~-~hIPyRdSKLTrLLrdsLgGnsrT~mIa~I 496 (714)
|+|+|||||||||..+++. .+....|+..||+||++|++||.+|..++ .|||||+||||+||+|+|+|||+|+||+||
T Consensus 235 s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 9999999999999777554 45567799999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhh
Q 005116 497 SPSSGCCEHTLNTLRYADRVK 517 (714)
Q Consensus 497 SP~~~~~eETLsTLrfA~Rak 517 (714)
||+..+++|||+||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.9e-71 Score=598.50 Aligned_cols=312 Identities=41% Similarity=0.642 Sum_probs=280.9
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcC--CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHH
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYS--NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPII 273 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~--~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~v 273 (714)
+|+|+||+||++..|...+...++.+.+ ..+++.. .+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999998777776766544 2444321 4689999999999999999999999999999
Q ss_pred hcCCceEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc-
Q 005116 274 FQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR- 340 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~- 340 (714)
++|+|+||||||||||||||||+| ++++++.+||..+........|.|+|||+|||||++||||++.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 149 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST 149 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc
Confidence 999999999999999999999965 6789999999999876666789999999999999999999864
Q ss_pred ---ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCC-------C
Q 005116 341 ---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGS-------E 410 (714)
Q Consensus 341 ---~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~-------~ 410 (714)
..+.++++++++++|.|++++.|.+++|++.+|..|.++|..+.|.+|..|||||+||+|+|.+..... .
T Consensus 150 ~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~ 229 (341)
T cd01372 150 SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGD 229 (341)
T ss_pred cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999999875531 1
Q ss_pred CCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCCCCCccccccccccCCc
Q 005116 411 SKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGN 487 (714)
Q Consensus 411 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~---~hIPyRdSKLTrLLrdsLgGn 487 (714)
.......|+|+||||||+||..++.. .+.+.+|+..||+||.+|++||++|..++ .|||||+||||+||+|+|+||
T Consensus 230 ~~~~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~ 308 (341)
T cd01372 230 DKNSTLTSKFHFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGN 308 (341)
T ss_pred CCCceeeEEEEEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCC
Confidence 23456789999999999999776554 45667799999999999999999999876 799999999999999999999
Q ss_pred ceeEEEEecCCCCCChHhHHHHHHHHHHhhccc
Q 005116 488 SRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 520 (714)
Q Consensus 488 srT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~ 520 (714)
++|+||+||||...+++|||+||+||+|+|+|+
T Consensus 309 s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 309 SHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred ceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-71 Score=623.27 Aligned_cols=339 Identities=36% Similarity=0.522 Sum_probs=303.5
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCC-------CChHHHHHHh
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEE-------VSNDEVYRET 265 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~ 265 (714)
+..+|||+|||||++.+|+.....+++.++.+..+++.|..+..+......++|.||++|.+. +.|+.||..+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 357899999999999999999999999999998888887666555554567899999999654 5799999999
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCCeeecccC
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 338 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 338 (714)
+.-+|+.+|+|||+||||||||||||||||+| ++|+.+..||..|.. ......|.|.|||+|||||++||||+
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 99999999999999999999999999999975 789999999999987 44567899999999999999999998
Q ss_pred Cc---ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCC-CCCCCC
Q 005116 339 DR---KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADG-SESKPP 414 (714)
Q Consensus 339 ~~---~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~-~~~~~~ 414 (714)
++ +.++++++.--|++|.||+++.|.|++|+..++..|+++|+++.|+||..|||||+||.|.|.+.-.+ ......
T Consensus 162 Pk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sg 241 (1714)
T KOG0241|consen 162 PKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSG 241 (1714)
T ss_pred CCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcch
Confidence 74 56899999999999999999999999999999999999999999999999999999999999876322 222344
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCCCCCCccccccccccCCcc
Q 005116 415 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND------QGHIPFRGSKLTEVLRDSFVGNS 488 (714)
Q Consensus 415 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~------~~hIPyRdSKLTrLLrdsLgGns 488 (714)
...+||++||||||||+.+++..+ .+.+||.+||+||.+||.||.||+.. .++||||||.||+||||+|||||
T Consensus 242 eKvsklslVDLAgserasktga~g-~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNs 320 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAG-SRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNS 320 (1714)
T ss_pred hheeeeeEEEeccccccccccchh-hhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCc
Confidence 578999999999999988877665 46679999999999999999999642 46999999999999999999999
Q ss_pred eeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCcccccc
Q 005116 489 RTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSS 532 (714)
Q Consensus 489 rT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~~~~~~ 532 (714)
+|+||+||||++.+|+|||+|||||+|||.|++...++.++...
T Consensus 321 rTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 321 RTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred eeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 99999999999999999999999999999999888777665443
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4e-69 Score=580.14 Aligned_cols=315 Identities=37% Similarity=0.544 Sum_probs=281.0
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEcC---CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 194 VAKIKVVVRKRPLNKKELAKNEEDIIETYS---NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 194 ~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~---~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
.++|+|+||+||+...|. .....++.+.+ +.+.+..+ ..+.+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 378999999999998886 34445566544 33333322 2356789999999999999999998 69999
Q ss_pred HHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCCeeecccCC----
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSD---- 339 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~---- 339 (714)
+.+++|+|+||||||+|||||||||+| +.++++.+||..+..... ...|.|++||+|||+|+++|||++
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP 150 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC
Confidence 999999999999999999999999976 689999999999987543 678999999999999999999986
Q ss_pred cccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEE
Q 005116 340 RKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGK 419 (714)
Q Consensus 340 ~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~sk 419 (714)
.+.+.+++++.++++|.|++++.|.|++|+.++|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+
T Consensus 151 ~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~ 227 (329)
T cd01366 151 KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGK 227 (329)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999876433 34567899
Q ss_pred EEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcceeEEEEecCCC
Q 005116 420 LSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPS 499 (714)
Q Consensus 420 L~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~ 499 (714)
|+||||||+|+..+.... +.+..|+..||+||.+|++||.+|..+..|||||+||||+||+|+|+|+++|+||+||||.
T Consensus 228 l~~VDLaGsE~~~~~~~~-~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~ 306 (329)
T cd01366 228 LNLVDLAGSERLKKSGAT-GDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPL 306 (329)
T ss_pred EEEEECCCCccccccccc-chhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCc
Confidence 999999999998766544 4556799999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhhccccC
Q 005116 500 SGCCEHTLNTLRYADRVKSLSKG 522 (714)
Q Consensus 500 ~~~~eETLsTLrfA~Rak~i~~~ 522 (714)
..+++||++||+||+|+++|+++
T Consensus 307 ~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 307 ESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999764
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.8e-67 Score=566.12 Aligned_cols=315 Identities=42% Similarity=0.629 Sum_probs=286.1
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHh
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIF 274 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl 274 (714)
+|+|+||+||+...| ..+...++.+.+ +++.+.+++.. .....+.|.||+||+++++|++||+.+++|+|+.++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~ 75 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVL 75 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 599999999999877 445677888877 88999877643 234568999999999999999999999999999999
Q ss_pred cCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhcc-CcceEEEEEEEEEeCCeeecccCC---cccce
Q 005116 275 QRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYR-SQGFQLFVSFFEIYGGKLFDLLSD---RKKLC 344 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~-~~~~~V~vS~~EIYnE~v~DLL~~---~~~l~ 344 (714)
+|+|+||||||+|||||||||+| +.++++.+||..+..... ...+.|++||+|||+|+|+|||++ ...+.
T Consensus 76 ~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~ 155 (328)
T cd00106 76 EGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLS 155 (328)
T ss_pred CCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcE
Confidence 99999999999999999999988 889999999999887433 567999999999999999999987 68899
Q ss_pred eEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005116 345 MREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 424 (714)
Q Consensus 345 ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVD 424 (714)
+++++++++++.|++++.|.|++|++++|..|.++|.++.|..|..|||||+||+|+|.+....... .....|+|+|||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~-~~~~~s~l~~VD 234 (328)
T cd00106 156 LREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG-RSIKSSKLNLVD 234 (328)
T ss_pred EEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC-ccEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987543321 136789999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005116 425 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ--GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 502 (714)
Q Consensus 425 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~--~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 502 (714)
|||+|+..+.. ..+....|+..||+||.+|++||.+|..++ .|||||+||||+||||+|+|+++|+||+||+|...+
T Consensus 235 LaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~ 313 (328)
T cd00106 235 LAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSEN 313 (328)
T ss_pred CCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 99999977654 456667799999999999999999999988 999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhh
Q 005116 503 CEHTLNTLRYADRVK 517 (714)
Q Consensus 503 ~eETLsTLrfA~Rak 517 (714)
++||++||+||+|+|
T Consensus 314 ~~eTl~tL~~a~r~~ 328 (328)
T cd00106 314 YDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.6e-67 Score=565.03 Aligned_cols=322 Identities=42% Similarity=0.618 Sum_probs=291.2
Q ss_pred CeEEEEEeCCCCchhhhcCCCCeEEEcCC---eEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHH
Q 005116 196 KIKVVVRKRPLNKKELAKNEEDIIETYSN---SLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPI 272 (714)
Q Consensus 196 ~IkV~VRvRPl~~~E~~~~~~~~i~~~~~---~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~ 272 (714)
+|+|+|||||++..|...+...++.+.++ .+++..+. ...+...|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 59999999999999988888888888654 66666543 2235678999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCCccccc------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCC-ccccee
Q 005116 273 IFQRTKATCFAYGQTGSGKTYTMK------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSD-RKKLCM 345 (714)
Q Consensus 273 vl~G~N~tvfAYGqTGSGKTyTM~------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~-~~~l~i 345 (714)
+++|+|+||||||+|||||||||+ |+.++++.+||..+........|.|+|||+|||+|+++|||++ ++.+.+
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 999999999999999999999998 6889999999999977666778999999999999999999985 567899
Q ss_pred EecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEEC
Q 005116 346 REDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDL 425 (714)
Q Consensus 346 red~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDL 425 (714)
++++.+++++.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||
T Consensus 155 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~-~~~~~~~~s~l~~VDL 233 (335)
T smart00129 155 REDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN-SSSGSGKASKLNLVDL 233 (335)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC-CCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999976332 2334578899999999
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCCCccccccccccCCcceeEEEEecCCCCCCh
Q 005116 426 AGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCC 503 (714)
Q Consensus 426 AGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~--~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~ 503 (714)
||+||....+ ..+.+.+|+..||+||.+|++||.+|.+ +..|||||+||||+||+++|+|+++|+||+||||...++
T Consensus 234 aGse~~~~~~-~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 234 AGSERASKTG-AEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCcccccc-ChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 9999976654 4456677999999999999999999998 567999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccccCCCC
Q 005116 504 EHTLNTLRYADRVKSLSKGNNP 525 (714)
Q Consensus 504 eETLsTLrfA~Rak~i~~~~~~ 525 (714)
+||++||+||.|+++|++.|..
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCc
Confidence 9999999999999999998854
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-68 Score=615.46 Aligned_cols=329 Identities=36% Similarity=0.522 Sum_probs=292.1
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhH
Q 005116 192 SSVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIV 270 (714)
Q Consensus 192 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 270 (714)
.-.|+|||+|||||+.+.|.......++...+ ..+.+..+... .....+.|.||+||+|.++|++||.. +.|+|
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv 385 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKG----DKLEPQSFKFDKVFGPLASQDDVFEE-VSPLV 385 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCC----CCCccccceeeeecCCcccHHHHHHH-HHHHH
Confidence 36799999999999999998765555555544 34566544322 11233479999999999999999988 89999
Q ss_pred HHHhcCCceEEEeeccCCCCCcccccC-------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc---
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMKP-------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR--- 340 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~G-------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~--- 340 (714)
+++|+|||+||||||||||||||||.| +.++++..||..+.....+|.|.+.+||+|||||.|+|||++.
T Consensus 386 ~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~ 465 (670)
T KOG0239|consen 386 QSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYV 465 (670)
T ss_pred HHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccc
Confidence 999999999999999999999999977 6799999999999987778999999999999999999999875
Q ss_pred ccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEE
Q 005116 341 KKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKL 420 (714)
Q Consensus 341 ~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL 420 (714)
.++.|+.+++++..|.+++.+.|.+.+++..+++.|.++|++++|.+|..|||||+||+|+|... +........|.|
T Consensus 466 ~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~---~~~t~~~~~g~l 542 (670)
T KOG0239|consen 466 GKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI---NELTGIRVTGVL 542 (670)
T ss_pred cceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc---ccCcccccccce
Confidence 57899999999999999999999999999999999999999999999999999999999999865 334456778999
Q ss_pred EEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcceeEEEEecCCCC
Q 005116 421 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSS 500 (714)
Q Consensus 421 ~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~ 500 (714)
+|||||||||...+... +.+.+|+..||+||++||+||.||..++.|||||+||||+||+|||||+++|+|+++|||..
T Consensus 543 ~LVDLAGSER~~~s~~t-G~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~ 621 (670)
T KOG0239|consen 543 NLVDLAGSERVSKSGVT-GERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAA 621 (670)
T ss_pred eEeecccCcccCcCCCc-hhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccH
Confidence 99999999997765554 55677999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhhccccCCCCCccc
Q 005116 501 GCCEHTLNTLRYADRVKSLSKGNNPKKDI 529 (714)
Q Consensus 501 ~~~eETLsTLrfA~Rak~i~~~~~~~~~~ 529 (714)
.++.||+++|+||.|++.+..++..+...
T Consensus 622 ~~~~Etl~sL~FA~rv~~~~lG~a~~~~~ 650 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSVELGSARKQVS 650 (670)
T ss_pred HHHhhhhhccchHHHhhceeccccccccc
Confidence 99999999999999999998877655433
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3e-68 Score=573.74 Aligned_cols=316 Identities=41% Similarity=0.632 Sum_probs=277.4
Q ss_pred EeCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEE
Q 005116 202 RKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATC 281 (714)
Q Consensus 202 RvRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tv 281 (714)
||||++..|...+...++.+.... ..................|.||+||+++++|++||+.++.|+|+.+|+|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQD--SNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTE--TEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCc--cccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 999999999999988877765321 111111222333446789999999999999999999999999999999999999
Q ss_pred EeeccCCCCCcccccC--------CChhhHHHHHHHHhhhccC--cceEEEEEEEEEeCCeeecccCCc-----ccceeE
Q 005116 282 FAYGQTGSGKTYTMKP--------LPLKASRDILRLMHHTYRS--QGFQLFVSFFEIYGGKLFDLLSDR-----KKLCMR 346 (714)
Q Consensus 282 fAYGqTGSGKTyTM~G--------l~~~a~~dIf~~i~~~~~~--~~~~V~vS~~EIYnE~v~DLL~~~-----~~l~ir 346 (714)
||||+|||||||||+| +.++++.+||..+...... ..|.|+|||+|||+|+|+|||++. +.+.++
T Consensus 79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 9999999999999988 5789999999999875443 679999999999999999999876 469999
Q ss_pred ecCCCc-EEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCC-CCeeEEEEEEEE
Q 005116 347 EDGKQQ-VCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESK-PPRLVGKLSFID 424 (714)
Q Consensus 347 ed~~~~-v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~-~~~~~skL~fVD 424 (714)
+++..+ ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+........ .....|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999875 999999999999999999999999999999999999999999999999999876543321 125789999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005116 425 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDND--QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 502 (714)
Q Consensus 425 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~--~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 502 (714)
|||+||..+....++++..|+..||+||.+|++||.+|..+ ..|||||+||||+||+|+|+|||+|+||+||+|+..+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 99999987777666777889999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc
Q 005116 503 CEHTLNTLRYADRVKSL 519 (714)
Q Consensus 503 ~eETLsTLrfA~Rak~i 519 (714)
++||++||+||+|+|+|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-65 Score=566.78 Aligned_cols=329 Identities=31% Similarity=0.513 Sum_probs=278.5
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEE-cCCeEEEecccccccc---cccccceeEEeeeecCCCCChHHHHHHhhh
Q 005116 192 SSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDL---TEYVEKHEFVFDAVLNEEVSNDEVYRETVE 267 (714)
Q Consensus 192 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~kv~~---~~~~~~~~F~FD~VF~~~asQeeVy~~~v~ 267 (714)
.....|.||||+||+.. ..+...++.+ +..++.++.|...... ......+.|.|-+||+|+++|.+||+.++.
T Consensus 28 ~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 36778999999999986 2233344444 5567777656433221 223345789999999999999999999999
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhh-c--------------------------
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHT-Y-------------------------- 314 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~-~-------------------------- 314 (714)
|+|.+++.|.|..+|+||.|||||||||.| +.|+++..||..|... +
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975 7788888887665420 0
Q ss_pred -------------------------------------cCcceEEEEEEEEEeCCeeecccCCc------cc-ceeEecCC
Q 005116 315 -------------------------------------RSQGFQLFVSFFEIYGGKLFDLLSDR------KK-LCMREDGK 350 (714)
Q Consensus 315 -------------------------------------~~~~~~V~vS~~EIYnE~v~DLL~~~------~~-l~ired~~ 350 (714)
.+..|.|||||+||||+-|||||.+. .+ ..+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 11238999999999999999999653 23 67899999
Q ss_pred CcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCCC
Q 005116 351 QQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSER 430 (714)
Q Consensus 351 ~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER 430 (714)
+.++|.|+++|.|.+.+|++++|..|.++|+.++|.+|+.|||||+||+|.|.+..... ......+|.|+|||||||||
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999998875542 23467889999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCCCCCCccccccccccCCcceeEEEEecCCCCCChHh
Q 005116 431 GADTTDNDKQTRMEGAEINKSLLALKECIRALDND-----QGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEH 505 (714)
Q Consensus 431 ~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~-----~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eE 505 (714)
...+. +.+.+.+|+++||.||++||.||.+|+.+ +.+|||||||||++++.+|.|..+.+||+||+|...+|+|
T Consensus 344 t~rtq-~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 344 TNRTQ-NSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred ccccc-chhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 66655 45567779999999999999999999765 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCC
Q 005116 506 TLNTLRYADRVKSLSKGNNP 525 (714)
Q Consensus 506 TLsTLrfA~Rak~i~~~~~~ 525 (714)
+|+.|+||..+..|...+..
T Consensus 423 nl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHhcccccccCcc
Confidence 99999999999998655443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-61 Score=548.74 Aligned_cols=316 Identities=38% Similarity=0.526 Sum_probs=279.7
Q ss_pred eCCCCchhhhcCCCCeEEEcCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEE
Q 005116 203 KRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCF 282 (714)
Q Consensus 203 vRPl~~~E~~~~~~~~i~~~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvf 282 (714)
|||+...|...+...|+.+.+++-.|.- .....|+||+||+...+|.++|+.+|.|+++.+|.|||+|++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i----------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvl 70 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI----------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVL 70 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee----------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceee
Confidence 6999999999998888876553322221 135689999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccc----------CCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCc---ccceeEecC
Q 005116 283 AYGQTGSGKTYTMK----------PLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDR---KKLCMREDG 349 (714)
Q Consensus 283 AYGqTGSGKTyTM~----------Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---~~l~ired~ 349 (714)
|||||||||||||. |++|++...+|..+..... ..|.|.|||+|||++.|+|||.+. ..+.+++ +
T Consensus 71 aygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~ 148 (913)
T KOG0244|consen 71 AYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-P 148 (913)
T ss_pred eecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-c
Confidence 99999999999993 7899999999999987543 679999999999999999999843 3466777 8
Q ss_pred CCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCC
Q 005116 350 KQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSE 429 (714)
Q Consensus 350 ~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAGSE 429 (714)
++++.+.|++++.|.+..++...|..|.-.|++++|.||..|||||+||+|.+++..... ......+||+||||||||
T Consensus 149 ~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSE 226 (913)
T KOG0244|consen 149 KGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSE 226 (913)
T ss_pred CCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccc
Confidence 899999999999999999999999999999999999999999999999999998754322 223466899999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCCccccccccccCCcceeEEEEecCCCCCChHhHH
Q 005116 430 RGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG--HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTL 507 (714)
Q Consensus 430 R~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~--hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~~eETL 507 (714)
|.+.+.+. +.+.+||.+||.+|++||+||.||...+. |||||+|||||||+|+||||++|+||+||||+..+.+|||
T Consensus 227 R~kkT~a~-gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~Etl 305 (913)
T KOG0244|consen 227 RVKKTKAE-GDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETL 305 (913)
T ss_pred cccccccc-hhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHH
Confidence 98777655 45677999999999999999999988776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCccccccc
Q 005116 508 NTLRYADRVKSLSKGNNPKKDILSST 533 (714)
Q Consensus 508 sTLrfA~Rak~i~~~~~~~~~~~~~~ 533 (714)
+||+||+|+++|++.|.++.|+....
T Consensus 306 nTl~ya~Rak~iknk~vvN~d~~~~~ 331 (913)
T KOG0244|consen 306 NTLRYADRAKQIKNKPVVNQDPKSFE 331 (913)
T ss_pred HHHHHhhHHHHhcccccccccHHHHH
Confidence 99999999999999988887665444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-57 Score=516.82 Aligned_cols=314 Identities=40% Similarity=0.612 Sum_probs=275.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 271 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 271 (714)
....++++++..|-...+ ..+...+ ..+.++.. ...+|.||+||++.++|++||+.+++|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~ 83 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS----------KEGTYAFDKVFGPSATQEDVYEETIKPLID 83 (568)
T ss_pred eecCceEEEeecCCCcch------heeecccccccccccc----------cceEEEEeeccCCCCcHHHHHHHhhhhHHH
Confidence 567899999999953322 2222211 12221111 156799999999999999999999999999
Q ss_pred HHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeeecccCCccc-ce
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKK-LC 344 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~~-l~ 344 (714)
.++.|||+||||||||||||||||.| +.++.+..||..+........|.|.|||+|||||+++|||.+... +.
T Consensus 84 ~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~ 163 (568)
T COG5059 84 SLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLN 163 (568)
T ss_pred HHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccc
Confidence 99999999999999999999999965 778999999999998776788999999999999999999987655 78
Q ss_pred eEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEE
Q 005116 345 MREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFID 424 (714)
Q Consensus 345 ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVD 424 (714)
++++...+|.|.|++++.|.+.+|++.+|+.|..+|+++.|.+|..|||||+||+|.+.+...... ....++|+|||
T Consensus 164 ~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvD 240 (568)
T COG5059 164 IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSETSKLSLVD 240 (568)
T ss_pred ccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---ceecceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988744322 22337999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCCCccccccccccCCcceeEEEEecCCCCCC
Q 005116 425 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN--DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGC 502 (714)
Q Consensus 425 LAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~--~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa~ISP~~~~ 502 (714)
||||||...+ .....+..|++.||+||++||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|...+
T Consensus 241 LagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~ 319 (568)
T COG5059 241 LAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNS 319 (568)
T ss_pred eccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCc
Confidence 9999998776 55666778999999999999999999997 78899999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhccccCCCCC
Q 005116 503 CEHTLNTLRYADRVKSLSKGNNPK 526 (714)
Q Consensus 503 ~eETLsTLrfA~Rak~i~~~~~~~ 526 (714)
+++|.+||+||+|+|+|++.+..+
T Consensus 320 ~~et~~tL~~a~rak~I~~~~~~~ 343 (568)
T COG5059 320 FEETINTLKFASRAKSIKNKIQVN 343 (568)
T ss_pred hHHHHHHHHHHHHHhhcCCccccc
Confidence 999999999999999998876655
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.3e-46 Score=372.89 Aligned_cols=173 Identities=42% Similarity=0.653 Sum_probs=155.2
Q ss_pred HHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC------CChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCeee
Q 005116 261 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP------LPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLF 334 (714)
Q Consensus 261 Vy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G------l~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~v~ 334 (714)
||+.++ |+|+.+++|+|+||||||||||||||||+| +.+++..+
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 999999999999999999999999999986 33333332
Q ss_pred cccCCcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCC
Q 005116 335 DLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPP 414 (714)
Q Consensus 335 DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~ 414 (714)
++.+++.|.++|+.+.|.+|..|||||+||+|+|.+..........
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 8899999999999999999999999999999999887654433455
Q ss_pred eeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccccCCcceeEEEE
Q 005116 415 RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMIS 494 (714)
Q Consensus 415 ~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrdsLgGnsrT~mIa 494 (714)
...++|+|||||||||...+.. .+.+..|+..||+||.+|++||.+|.+++.|||||+||||+||||+|+|||+|+||+
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~-~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGA-EGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred eeeeeEEEEEccccccccccCC-chhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 6789999999999999766654 455677999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 005116 495 CISP 498 (714)
Q Consensus 495 ~ISP 498 (714)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.39 E-value=9.3e-07 Score=102.77 Aligned_cols=251 Identities=23% Similarity=0.208 Sum_probs=137.1
Q ss_pred CCCCCeEEEEEeCCCCchhhhcCCCCeEEE------cCCeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHh
Q 005116 192 SSVAKIKVVVRKRPLNKKELAKNEEDIIET------YSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRET 265 (714)
Q Consensus 192 ~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~------~~~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 265 (714)
++..+++|+|+|+|.......- ...... -.+.+.+..+ ...+.....|.||.+|.....+..++..
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et--~~tL~~a~rak~I~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 373 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEET--INTLKFASRAKSIKNKIQVNSS-----SDSSREIEEIKFDLSEDRSEIEILVFRE- 373 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHH--HHHHHHHHHHhhcCCcccccCc-----CcchHHHHHHHhhhhhhhhhhhhHHHHH-
Confidence 4555999999999987332110 000000 0111111110 1122345679999999999888888876
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccccCCChhhHH----HHHHHHhh-hccCcceEEEEEEEEEeCCeeecccCC-
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASR----DILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLSD- 339 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~----dIf~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~~- 339 (714)
...+++.-++| +++|+++++++++||.--...... .++..... ..+.+.+...+-+.++|-..+.++...
T Consensus 374 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 449 (568)
T COG5059 374 QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEE 449 (568)
T ss_pred HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777 899999999999999532222222 22222222 112223333333444441111122211
Q ss_pred -ccc-ceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeE
Q 005116 340 -RKK-LCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLV 417 (714)
Q Consensus 340 -~~~-l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~ 417 (714)
.+. -.+....+.+.....+.........+..... .+...+..+.+..|..++++|.+|.........- ... .
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~~-~- 523 (568)
T COG5059 450 LSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS---TKE-L- 523 (568)
T ss_pred cCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh---hHH-H-
Confidence 000 0000000000000000001111111111111 4567788899999999999999998776433111 011 1
Q ss_pred EEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 418 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD 463 (714)
Q Consensus 418 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~ 463 (714)
. +..|||||+||. -....+.+..+...+|++|..++.+|.++.
T Consensus 524 ~-~n~~~~~~~e~~--~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 524 S-LNQVDLAGSERK--VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred H-hhhhhccccccc--hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 1 689999999996 344555667799999999999999998763
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.0083 Score=68.33 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=62.8
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHH
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLM 310 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~dIf~~i 310 (714)
..|..-.-|.|.-+|- ..++.||+.+-+|... -.-.|.|||||||||--++ --.+..++..+
T Consensus 3 ~~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~~-QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQP----EAIAELVEGIENGLKH-QTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcH----HHHHHHHHHHhcCcee-eEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 3577777888888887 4566777777666543 3456999999999994311 12345678888
Q ss_pred hhhccCcceEEEEEEEEEeCCee
Q 005116 311 HHTYRSQGFQLFVSFFEIYGGKL 333 (714)
Q Consensus 311 ~~~~~~~~~~V~vS~~EIYnE~v 333 (714)
...+.+..+..+||||.-|+-.-
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHhCcCcceEEEeeeccccCccc
Confidence 88888899999999999998543
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.46 E-value=0.056 Score=55.71 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=31.6
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..|+||.-+.. ..|+..|.. +..+.+.--..+| .+|-||++|+||||.|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 46899987653 357777754 4445544111234 478899999999998743
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.33 E-value=0.15 Score=55.10 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=27.8
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+.|++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 567888899999999999999999999998
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=90.30 E-value=0.19 Score=51.95 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=32.4
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..++||..+... ++.-+ .-+.+.+-.+++..++-||++|+||||.+..
T Consensus 11 ~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 458999988654 33222 1222333346788899999999999999854
No 35
>PRK06620 hypothetical protein; Validated
Probab=87.28 E-value=0.23 Score=51.07 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=33.6
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCc---eEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK---ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N---~tvfAYGqTGSGKTyTM~ 296 (714)
...|+||..+-.. +|+..|.. ++.+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 4568999877643 46667765 3333331 1343 459999999999999984
No 36
>PRK12377 putative replication protein; Provisional
Probab=86.88 E-value=0.47 Score=50.11 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=35.2
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
.+||........|..++.. +..+++.+..+. ..++-||++|+||||.+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3677655444556666654 667777766553 5688999999999999854
No 37
>PRK06526 transposase; Provisional
Probab=86.67 E-value=0.33 Score=51.35 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=27.8
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCC
Q 005116 252 LNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 252 F~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 298 (714)
+.+..+...+..-.....|+ .+.| |+.||++|+||||.+.++
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al 118 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHH
Confidence 44445555555544445554 3444 799999999999998654
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.43 E-value=1.2 Score=48.82 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=24.3
Q ss_pred ChHHHHHHhhhhhHHHHhc-CCceEEEeeccCCCCCcccc
Q 005116 257 SNDEVYRETVEPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 257 sQeeVy~~~v~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 295 (714)
..++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 19 gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 19 HRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444444322 2333444 45568999999999999987
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.04 E-value=0.51 Score=49.06 Aligned_cols=48 Identities=13% Similarity=0.331 Sum_probs=31.8
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..|+||..+.. .|...+.. +..++. ......++-||++|+||||.+..
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788866654 56666644 333332 22335799999999999999853
No 40
>PRK08116 hypothetical protein; Validated
Probab=86.00 E-value=0.43 Score=50.81 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=35.2
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhc--CCceEEEeeccCCCCCccccc
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQ--RTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~--G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++||... .+..+...|.. ++..++.+.. ..+..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 346777654 34555556644 6666776544 345569999999999999984
No 41
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.96 E-value=1.4 Score=49.23 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHhcC-CceEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEE
Q 005116 270 VPIIFQR-TKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEI 328 (714)
Q Consensus 270 V~~vl~G-~N~tvfAYGqTGSGKTyTM~Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EI 328 (714)
+..++.| .-..++.||.||||||.|+ +.+++.+........ .++|-+.+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 3344454 3344999999999999988 456666655333222 556655554
No 42
>PRK09087 hypothetical protein; Validated
Probab=85.23 E-value=0.46 Score=49.33 Aligned_cols=48 Identities=25% Similarity=0.181 Sum_probs=32.3
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
...|+||..+... .|..+|.. ++....-.+..++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 3458899877543 35557763 232222235568999999999999985
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.07 E-value=0.48 Score=54.03 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.1
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
+..|+||.-+-. .++...|.. +..+.+. -..+|. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 456899987743 456666654 3334432 112565 99999999999999843
No 44
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.03 E-value=0.41 Score=56.60 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=34.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..|+||..+-.. ++..+|. .+..+++..-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 568999765432 4555553 355555543345675 89999999999999854
No 45
>PRK05642 DNA replication initiation factor; Validated
Probab=85.01 E-value=0.55 Score=48.84 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=29.5
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcC---C-ceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQR---T-KATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G---~-N~tvfAYGqTGSGKTyTM~G 297 (714)
..|+||.-+.. .+..++ ..++...++ . ...++-||.+|+||||.+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 46899988743 233333 333333222 1 24689999999999999843
No 46
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.22 E-value=0.6 Score=52.36 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=31.9
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
...|+||...- ...+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 35689998442 2456556643 4444443111234 47889999999999984
No 47
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.94 E-value=1.4 Score=52.92 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=54.8
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHHhh
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLMHH 312 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~dIf~~i~~ 312 (714)
|....=|.|.-.|..-+.. +++.+-+|....+ .+|.||||||+||-.+. ...+..++.-+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4445557788888876665 4555556643333 78999999999994321 1123456666655
Q ss_pred hccCcceEEEEEEEEEeCCe
Q 005116 313 TYRSQGFQLFVSFFEIYGGK 332 (714)
Q Consensus 313 ~~~~~~~~V~vS~~EIYnE~ 332 (714)
.+....+..+||||.-|.-.
T Consensus 77 f~p~~~V~~f~sy~d~y~pe 96 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPE 96 (655)
T ss_pred hCCCCeEEEEeeecccCCcc
Confidence 55555688899999999854
No 48
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.92 E-value=0.75 Score=48.49 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=33.2
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..+||........|..++.. +...++.+..+. ..++-||.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 45677654334456556654 555555544443 3689999999999999854
No 49
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=83.42 E-value=0.7 Score=44.42 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.8
Q ss_pred hhHHHHhcC-CceEEEeeccCCCCCcccccC
Q 005116 268 PIVPIIFQR-TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 268 plV~~vl~G-~N~tvfAYGqTGSGKTyTM~G 297 (714)
.+++.+-.. ....++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444444 456677778999999999964
No 50
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.38 E-value=0.37 Score=52.96 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 260 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 260 eVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
.++.. +...|+.+-.+. -.++-||++|+||||.+..
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34433 555777766554 5699999999999998854
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.16 E-value=0.67 Score=52.82 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=32.7
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
...|+||..... ..+...|.. +..+.+.--..+| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 356889874432 356656654 4444443212344 488899999999999853
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.72 E-value=0.97 Score=45.81 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=31.9
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++||..... .+..+++. ++.++ .......|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45788877732 45555544 33332 24567789999999999999884
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.69 E-value=0.91 Score=41.09 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=19.2
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334557889999999999877
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.68 E-value=0.7 Score=52.89 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=31.9
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.|+||..+.. .+++..|.. +..+++.--..+| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 4899986643 356666643 4555432111234 48999999999999984
No 55
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.05 E-value=0.74 Score=52.96 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.2
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..+..+++.-++.|+.-|+||||||.||+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34567788899999999999999999994
No 56
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.41 E-value=1.2 Score=49.35 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=23.5
Q ss_pred hHHHHHHhhhhhHHHHhc-CCceEEEeeccCCCCCcccc
Q 005116 258 NDEVYRETVEPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 258 QeeVy~~~v~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 295 (714)
-++-++... ..+...+. +....++-||++|+|||+++
T Consensus 35 Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344444432 22333343 45567899999999999987
No 57
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.46 E-value=1.4 Score=45.04 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=31.7
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+..|+||..+.. .++.++. .++.++.. ...+..++-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~--~~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAG--ENAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccC--CcHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 345889998832 2333433 24444431 2345679999999999999874
No 58
>PRK08181 transposase; Validated
Probab=79.81 E-value=1.1 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=17.8
Q ss_pred cCCceEEEeeccCCCCCcccccCC
Q 005116 275 QRTKATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~Gl 298 (714)
.|.| |+-||++|+||||.+.++
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHH
Confidence 4554 899999999999998543
No 59
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.79 E-value=0.81 Score=49.76 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=32.9
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcC-CceEEEeeccCCCCCcccccC
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G-~N~tvfAYGqTGSGKTyTM~G 297 (714)
.+||.+-.....+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3455443223356666664 45666665543 334699999999999999854
No 60
>PRK08727 hypothetical protein; Validated
Probab=79.20 E-value=1.1 Score=46.66 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCC-ceEEEeeccCCCCCcccccC
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~-N~tvfAYGqTGSGKTyTM~G 297 (714)
..|+||.-+.... + .... +..+ ..|. .-.++-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 4578888664332 3 2222 1122 1232 24599999999999999843
No 61
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=78.49 E-value=2.1 Score=45.29 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=68.9
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceE-EEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEE
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKAT-CFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVS 324 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~t-vfAYGqTGSGKTyTM~Gl~~~a~~dIf~~i~~~~~~~~~~V~vS 324 (714)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|||||.++..+ +... ...+ +-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y----~~~G----LR 82 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEY----ADQG----LR 82 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHH----hhcC----ce
Confidence 34455555444444455443 5677775543 667999999999988532 2111 1122 45
Q ss_pred EEEEeCCeeeccc------CCcccceeEecCCCcEEEeccEEEE-eCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeE
Q 005116 325 FFEIYGGKLFDLL------SDRKKLCMREDGKQQVCIVGLQEYK-VSDVETIKELIEKGSSSRSTGTTGANEESSRSHAI 397 (714)
Q Consensus 325 ~~EIYnE~v~DLL------~~~~~l~ired~~~~v~v~gLte~~-V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaI 397 (714)
.+||..+.+.||- ..++.-.| +++.+|+--. =.+...+..+|+-|...| ....-+.+.|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 6888887766653 22221111 2333443111 123566777777776555 4455566777777776
Q ss_pred E
Q 005116 398 L 398 (714)
Q Consensus 398 f 398 (714)
=
T Consensus 155 ~ 155 (249)
T PF05673_consen 155 P 155 (249)
T ss_pred c
Confidence 4
No 62
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.18 E-value=1 Score=40.36 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.7
Q ss_pred EEeeccCCCCCcccccC
Q 005116 281 CFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~G 297 (714)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999843
No 63
>PF13245 AAA_19: Part of AAA domain
Probab=76.04 E-value=1.5 Score=37.87 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
|...+. .+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 34445568999999999983
No 64
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.26 E-value=4.3 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCceEEEeeccCCCCCccccc
Q 005116 276 RTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM~ 296 (714)
|-+.++|-||++|+|||.|+.
T Consensus 779 gpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 455678899999999999983
No 65
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.56 E-value=1.5 Score=51.61 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred hHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3456667788999999999999999984
No 66
>PRK10436 hypothetical protein; Provisional
Probab=74.19 E-value=1.6 Score=50.13 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.5
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445566778899999999999999993
No 67
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.70 E-value=1.8 Score=50.18 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=22.9
Q ss_pred hHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445667777889999999999999994
No 68
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.70 E-value=1.3 Score=45.34 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
-+.-+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999994
No 69
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=73.68 E-value=26 Score=33.70 Aligned_cols=78 Identities=15% Similarity=0.336 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH------------HHHHHH
Q 005116 626 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA------------GIMQLQ 693 (714)
Q Consensus 626 ~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~------------~i~~L~ 693 (714)
....++|+++=|.+-..+++.+++.++-+++++. .+++.....+..=..+|+.++++... .|..|.
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~ 115 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVK--SRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALS 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4577888999999999999999999999997776 44566666667777788888888765 888999
Q ss_pred HHHHHHHHHHHH
Q 005116 694 TQLAHFQKRLKE 705 (714)
Q Consensus 694 ~~l~~Fr~~L~e 705 (714)
.++.++...|.+
T Consensus 116 ~rId~L~~~v~~ 127 (132)
T PF05597_consen 116 ARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 70
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.46 E-value=2.5 Score=44.69 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
+|.|..+=.....+..++.. +..+++.+- ....++-||++|+||||...+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 34433333334567777766 556665555 334467899999999998854
No 71
>PRK09183 transposase/IS protein; Provisional
Probab=73.16 E-value=2.3 Score=45.05 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=26.5
Q ss_pred eeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCC
Q 005116 248 FDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 248 FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 298 (714)
||.-|.+..+...+..-..-..| -.|.| |+-+|++|+||||.+..+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~i---~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSFI---ERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCch---hcCCe--EEEEeCCCCCHHHHHHHH
Confidence 44445555555444432222222 24544 567999999999998543
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.98 E-value=2.4 Score=48.50 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=33.5
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHH--hcC--CceEEEeeccCCCCCcccccC
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPII--FQR--TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~v--l~G--~N~tvfAYGqTGSGKTyTM~G 297 (714)
+..|+||.-+-. .+++..|.. +..+.+.. ..| +| -+|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 456999987643 356655543 55554432 223 34 467899999999999853
No 73
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.85 E-value=2.4 Score=45.38 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.4
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+.++++.+.--..+.|+-.|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 456777877788899999999999999999
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.67 E-value=1.2 Score=40.89 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=13.4
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999988
No 75
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.45 E-value=1.9 Score=47.45 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=19.9
Q ss_pred HHHhcCCceEEEeeccCCCCCccccc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++.--.+.|+-.|+||||||.||.
T Consensus 115 ~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 115 RELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 33444345779999999999999994
No 76
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.36 E-value=1.9 Score=41.05 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=19.3
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
++.+.+|.+ ++..|+||+|||....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 444556666 7889999999999873
No 77
>PRK06921 hypothetical protein; Provisional
Probab=72.23 E-value=2.6 Score=44.92 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=22.4
Q ss_pred hhhhHHHHhc---CCceEEEeeccCCCCCcccccC
Q 005116 266 VEPIVPIIFQ---RTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 266 v~plV~~vl~---G~N~tvfAYGqTGSGKTyTM~G 297 (714)
+...++.+-. +..-.++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4455555432 2345689999999999999843
No 78
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.06 E-value=1.9 Score=43.54 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred hHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445556665566778999999999983
No 79
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=71.46 E-value=2.2 Score=47.77 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.0
Q ss_pred CceEEEeeccCCCCCccccc
Q 005116 277 TKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM~ 296 (714)
.++.|+..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999993
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.25 E-value=1.6 Score=38.84 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 81
>PF12846 AAA_10: AAA-like domain
Probab=71.00 E-value=1.6 Score=45.52 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 82
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.87 E-value=2.1 Score=45.09 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
.+.|+-.|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 567788899999999999
No 83
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.68 E-value=1.9 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=21.6
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
++.|.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444566889999999999999988
No 84
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.57 E-value=2.3 Score=48.12 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=31.1
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
...|+||..... .++.-.|.. +..+-+ .-.+.---+|-||.+|+||||.|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~~~va~-~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-AKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-HHHHHh-ccCCcCCcEEEECCCCCCHHHHHH
Confidence 356899976543 345545533 222222 111223358999999999999994
No 85
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.23 E-value=1.8 Score=43.78 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999983
No 86
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.02 E-value=2.4 Score=47.19 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.3
Q ss_pred CCceEEEeeccCCCCCccccc
Q 005116 276 RTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM~ 296 (714)
-..+.|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999994
No 87
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.27 E-value=2.7 Score=44.65 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHhcCCceEEEeeccCCCCCccccc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++..-.+.|+-.|.||||||.||.
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44555556678889999999999994
No 88
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.24 E-value=2.8 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=16.2
Q ss_pred CceEEEeeccCCCCCcccccC
Q 005116 277 TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM~G 297 (714)
..-.++-||++|+||||...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH
Confidence 344689999999999998754
No 89
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=68.53 E-value=5.7 Score=41.85 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=34.2
Q ss_pred EeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEEEEEEEECCCCCCC
Q 005116 362 KVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERG 431 (714)
Q Consensus 362 ~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER~ 431 (714)
.+.+++++...+...... ..+. + ..-|.-++.|.|... ..-.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p----------~~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSP----------HVLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCC----------CCCceEEEeCCCcccc
Confidence 446888898888876542 1111 1 234566777777642 1236899999999653
No 90
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=68.00 E-value=43 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=20.0
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 689999999999999999998
No 91
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.88 E-value=7.8 Score=43.19 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCCchhhhcCCCCeEEEcCCeEEEecc-ccccccc----ccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005116 195 AKIKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHET-KLKVDLT----EYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 269 (714)
Q Consensus 195 ~~IkV~VRvRPl~~~E~~~~~~~~i~~~~~~v~v~~~-~~kv~~~----~~~~~~~F~FD~VF~~~asQeeVy~~~v~pl 269 (714)
..-+.+|++.+.-.++.-. ..+.|..+.++.+|... ...+|.. ...+.-.-+|+.|=+=+..-++|.+.+--||
T Consensus 93 ~g~~~vV~i~~~vd~~~L~-pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLE-PGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcC-CCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 4457788888876665432 23334444333333211 0111111 1111122334444333333466777776776
Q ss_pred HH-HHhc--CCc--eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhh
Q 005116 270 VP-IIFQ--RTK--ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHH 312 (714)
Q Consensus 270 V~-~vl~--G~N--~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~dIf~~i~~ 312 (714)
.+ ..|. |.. --|+-||+.|+|||-.- .|-.++..+++|....+
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELARE 242 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence 64 3444 443 45899999999999654 24456666777776654
No 92
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=67.53 E-value=32 Score=32.89 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 625 SDDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAH 698 (714)
Q Consensus 625 ~~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~ 698 (714)
....+..||..-|.++ .+-+++++.+|+|+..|.+ =...+..+.+.....|..||++|..
T Consensus 65 vEKTi~til~LheKvl----~aKdETI~~lk~EN~fLKe----------Al~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 65 VEKTIGTILNLHEKVL----DAKDETIEALKNENRFLKE----------ALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hhhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4568899999999984 6679999999999999882 2456788888888899999998864
No 93
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=66.49 E-value=3 Score=47.16 Aligned_cols=53 Identities=17% Similarity=0.389 Sum_probs=35.1
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHH-HHhcC----CceEEEeeccCCCCCcccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQR----TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~-~vl~G----~N~tvfAYGqTGSGKTyTM 295 (714)
...++|+.|-+.+..-+++-+.+..|+.. .++.. ....|+-||++|+|||+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 34577888877655455555555555543 34442 3456889999999999987
No 94
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.11 E-value=8.3 Score=45.00 Aligned_cols=35 Identities=43% Similarity=0.567 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 627 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLL 661 (714)
Q Consensus 627 ~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll 661 (714)
.....+|++||+++.+||+.++.+++++..|+++|
T Consensus 639 ~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 639 HKAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566799999999999999999999999999987
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.76 E-value=4.6 Score=44.07 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=19.2
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|-..+..+.---.+-||+.|+|||.|.
T Consensus 48 L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 48 LKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333344434455788999999999998
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.76 E-value=6.5 Score=43.49 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=30.6
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CceEEEeeccCCCCCccccc
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM~ 296 (714)
..+.||.+.+-+.--+++.+.+..|+.. ..+. | ....|+-||++|+|||+++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3456666665544334444444444332 1222 1 23458899999999999873
No 97
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.69 E-value=3.6 Score=45.14 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.1
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.++..++.+. ..++-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3445555543 456666999999998874
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=65.24 E-value=4 Score=42.49 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.1
Q ss_pred HhcCCceEEEeeccCCCCCcccc
Q 005116 273 IFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 273 vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+......++-+|++|+|||+++
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH
Confidence 34444567888999999999887
No 99
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.04 E-value=5.1 Score=40.25 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999984
No 100
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=64.24 E-value=2.9 Score=39.89 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=13.7
Q ss_pred ceEEEe-eccCCCCCcccc
Q 005116 278 KATCFA-YGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfA-YGqTGSGKTyTM 295 (714)
...|++ .|.||+||||+-
T Consensus 52 KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CCEEEEeecCCCCcHHHHH
Confidence 345555 599999999975
No 101
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=64.20 E-value=37 Score=31.88 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHH------------HHHHHHH
Q 005116 626 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKA------------AGIMQLQ 693 (714)
Q Consensus 626 ~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~------------~~i~~L~ 693 (714)
...++.|+++=+..-...+..+++.++-++++..- .+++........-..|+.++++.. +.|..|.
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~--~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~ 102 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKT--ALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALS 102 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777777777777888888888888876531 112222112222334444444444 3888999
Q ss_pred HHHHHHHHHHHH
Q 005116 694 TQLAHFQKRLKE 705 (714)
Q Consensus 694 ~~l~~Fr~~L~e 705 (714)
.++.++..+|.+
T Consensus 103 ~RI~~Le~~l~~ 114 (118)
T TIGR01837 103 AKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHH
Confidence 999999888875
No 102
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=63.74 E-value=37 Score=41.11 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=20.0
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 589999999999999999998
No 103
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=63.53 E-value=4.8 Score=44.73 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=27.9
Q ss_pred CChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 256 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 256 asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..|+.+|+.++..+.. .....+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 4688999887665543 44456788999999999998
No 104
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=63.43 E-value=30 Score=41.95 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHHHh-cCCceEEEeeccCCCCCcccc
Q 005116 260 EVYRETVEPIVPIIF-QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 260 eVy~~~v~plV~~vl-~G~N~tvfAYGqTGSGKTyTM 295 (714)
.||.. +......++ .|.|.||+.-|.+|||||.+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 35543 333333333 589999999999999999987
No 105
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=63.16 E-value=28 Score=42.17 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 260 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 260 eVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.||..+-.....-+-.|.|.||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 356443333323333689999999999999999998
No 106
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=15 Score=39.35 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=65.6
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeE-EEcCC-eEEEecccccc--cccccccceeEEeeeecCCCCChHHHHHHhhhhh
Q 005116 194 VAKIKVVVRKRPLNKKELAKNEEDII-ETYSN-SLTVHETKLKV--DLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 269 (714)
Q Consensus 194 ~~~IkV~VRvRPl~~~E~~~~~~~~i-~~~~~-~v~v~~~~~kv--~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~pl 269 (714)
...-.-+|||-....+|+-+....+. .-.++ -+-|..|.... ..-...++..-.+..|=+-+..-++|-+.+--||
T Consensus 96 ttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelpl 175 (408)
T KOG0727|consen 96 TTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPL 175 (408)
T ss_pred ccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccc
Confidence 34456789998888888765432211 11112 22222222111 1111222233344444454555566666666666
Q ss_pred HHHHhc---CCc--eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhhh
Q 005116 270 VPIIFQ---RTK--ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHHT 313 (714)
Q Consensus 270 V~~vl~---G~N--~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~dIf~~i~~~ 313 (714)
...=+- |.+ -.|+.||+.|+|||-.. .|-.|+..+|+|++..+.
T Consensus 176 t~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 176 THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 653322 333 45899999999998654 245678888888887653
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=62.77 E-value=5.2 Score=43.03 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=25.9
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.||.+.+ |+++.+. +...+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 5666664 4444333 2222223443457889999999999984
No 108
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=62.61 E-value=13 Score=41.83 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=40.0
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhc----CCceEEEeeccCCCCCcccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQ----RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~----G~N~tvfAYGqTGSGKTyTM 295 (714)
..++.||.+.+.----..+.+.++-.+++.++. ..---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 456888888777666677777777777777664 23355778999999999985
No 109
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=62.46 E-value=3.7 Score=40.93 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
|..++.... ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344444333 56678999999999884
No 110
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=62.43 E-value=3.9 Score=45.93 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=29.4
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CceEEEeeccCCCCCcccc
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM 295 (714)
.+.||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 345555555443334444444444443 2232 1 2346889999999999876
No 111
>PF13479 AAA_24: AAA domain
Probab=62.35 E-value=3.6 Score=42.05 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999874
No 112
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.61 E-value=4.1 Score=44.17 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=19.9
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 334444443 4567889999999999983
No 113
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.48 E-value=2.9 Score=38.00 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999987
No 114
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.02 E-value=3.1 Score=42.30 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4678899999999998
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.87 E-value=5.7 Score=37.81 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..++..|.||||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 456778899999999873
No 116
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=59.48 E-value=38 Score=41.08 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.9
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999998
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.47 E-value=5.2 Score=42.93 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.0
Q ss_pred cCC-ceEEEeeccCCCCCccccc
Q 005116 275 QRT-KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~-N~tvfAYGqTGSGKTyTM~ 296 (714)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 3566779999999999874
No 118
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=58.62 E-value=4.4 Score=45.41 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=26.9
Q ss_pred eEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEeC
Q 005116 279 ATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYG 330 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYn 330 (714)
.-|+-||.+||||||++ +.+|+... .-.||++++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------r~~l~~~n------~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------RQLLRKLN------LENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------HHHHhhcC------CcceeeehHHhcc
Confidence 34689999999999998 33444431 2367888888775
No 119
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=58.54 E-value=2.7 Score=40.69 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=13.3
Q ss_pred hcCCceEEEeeccCCCCCcccc
Q 005116 274 FQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 274 l~G~N~tvfAYGqTGSGKTyTM 295 (714)
..+...+++-+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566788999999999999987
No 120
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.41 E-value=8.9 Score=43.26 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.6
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999983
No 121
>PHA00729 NTP-binding motif containing protein
Probab=58.40 E-value=7.2 Score=40.82 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.2
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
++.+++.+..|.-..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666665446899999999999998743
No 122
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=57.57 E-value=57 Score=39.67 Aligned_cols=21 Identities=29% Similarity=0.522 Sum_probs=19.9
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999987
No 123
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.51 E-value=4.2 Score=36.86 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 124
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.39 E-value=10 Score=42.11 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.1
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..|..+++|.+| +....||||||..+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 356778899986 56779999999887
No 125
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.20 E-value=6.8 Score=43.11 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=15.0
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.|+-.|.||||||.+|.
T Consensus 146 nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 146 NIVISGGTGSGKTTLAN 162 (323)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47888999999999993
No 126
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=56.93 E-value=7 Score=40.26 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=14.0
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
.+-.+++.|+.|||||+..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999875
No 127
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=56.82 E-value=11 Score=40.52 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=14.7
Q ss_pred EEEeeccCCCCCcccccC
Q 005116 280 TCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~G 297 (714)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555669999999999953
No 128
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=56.57 E-value=6.5 Score=41.97 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCCChHHHHHHhhhhhHHHHhc--CCceEEEeeccCCCCCccccc
Q 005116 254 EEVSNDEVYRETVEPIVPIIFQ--RTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 254 ~~asQeeVy~~~v~plV~~vl~--G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+-..|+++.+. +..++..... +....++-||+.|+|||+...
T Consensus 5 ~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 5 EFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33456666655 3344433222 222346779999999998873
No 129
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=56.06 E-value=13 Score=39.13 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=29.4
Q ss_pred cCCCCChHHHHHHhhhhhHHHHhcCC--ceEEEeeccCCCCCcccc
Q 005116 252 LNEEVSNDEVYRETVEPIVPIIFQRT--KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 252 F~~~asQeeVy~~~v~plV~~vl~G~--N~tvfAYGqTGSGKTyTM 295 (714)
|++-..|+.+-.. .+.+++.+.... -..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 4555678888876 677888776533 346899999999998654
No 130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.76 E-value=6.8 Score=39.02 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.4
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+++...+.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 444444443 3456778999999999883
No 131
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=55.24 E-value=93 Score=28.65 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 628 NLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRL 703 (714)
Q Consensus 628 ~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L 703 (714)
.+..+|+++..+ +++.++++++|...|... =+..|+.+..+|...+.+|+.--.+.+..+
T Consensus 5 ~L~~~L~~~~~~-------~~~L~~ll~~e~~~l~~~---------d~~~l~~~~~~k~~l~~~l~~le~~r~~~~ 64 (143)
T PF05130_consen 5 ELIELLEEQIEL-------LQELLELLEEEREALISG---------DIDELEELVEEKQELLEELRELEKQRQQLL 64 (143)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655555 677888888888777621 234567777777765555444444443333
No 132
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.66 E-value=4.1 Score=36.98 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=14.1
Q ss_pred EEeeccCCCCCccccc
Q 005116 281 CFAYGQTGSGKTYTMK 296 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~ 296 (714)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999999884
No 133
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=54.08 E-value=76 Score=38.64 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=20.1
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999987
No 134
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=53.95 E-value=5.4 Score=41.88 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.3
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
.+..++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6777888899999999999
No 135
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=53.49 E-value=12 Score=42.83 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.|+-||++|+|||.+..
T Consensus 219 gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAK 235 (438)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998873
No 136
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.56 E-value=8.8 Score=38.03 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=17.4
Q ss_pred HHHhcCCceEEEeeccCCCCCcccc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+.+++|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 44455777 577889999999874
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=52.42 E-value=7.7 Score=46.29 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=29.8
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
-+||.+++.+ .... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4677777543 3332 3455556677888999999999999877
No 138
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.35 E-value=8.2 Score=43.96 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=18.4
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 345668887 677889999999763
No 139
>PTZ00424 helicase 45; Provisional
Probab=51.75 E-value=7.6 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456788885 46789999999764
No 140
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=51.41 E-value=16 Score=43.93 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.1
Q ss_pred cCCceEEEeeccCCCCCccccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+|..+|++--|..|||||.|+.
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~ 440 (767)
T KOG1514|consen 419 QGLGSCMYISGVPGTGKTATVL 440 (767)
T ss_pred CCCceeEEEecCCCCCceehHH
Confidence 3667799999999999999984
No 141
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.37 E-value=8.2 Score=44.46 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHhcCCceEEEeeccCCCCCcccccC--------------------CChh-----hHHHHHHHHhhhccCcceEEEEEEE
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTMKP--------------------LPLK-----ASRDILRLMHHTYRSQGFQLFVSFF 326 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM~G--------------------l~~~-----a~~dIf~~i~~~~~~~~~~V~vS~~ 326 (714)
.+..|.+ ++|++|||||||+.... ..|. .-+.+...+........|.-++-.+
T Consensus 107 ~i~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~ 184 (482)
T KOG0335|consen 107 IISGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSV 184 (482)
T ss_pred eeecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceee
Confidence 3445655 48999999999998621 1121 2244555555444445566677778
Q ss_pred EEeCC
Q 005116 327 EIYGG 331 (714)
Q Consensus 327 EIYnE 331 (714)
.+|++
T Consensus 185 ~~ygg 189 (482)
T KOG0335|consen 185 VVYGG 189 (482)
T ss_pred eeeCC
Confidence 88987
No 142
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.33 E-value=8.9 Score=42.30 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=19.8
Q ss_pred hhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 267 EPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 267 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++..++.+ ...|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 3444444443 2447788999999999983
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.16 E-value=5.3 Score=37.36 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.8
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999987
No 144
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.98 E-value=84 Score=35.36 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 625 SDDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEM----NLLV-EADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHF 699 (714)
Q Consensus 625 ~~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~----~ll~-~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~F 699 (714)
....+++|++|-+++... ...|++.++-||+.. .++. ..++--|.-.--..+|+..++-.+.+|..|+.+|+..
T Consensus 258 ~~~~l~aileeL~eIk~~-q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasm 336 (455)
T KOG3850|consen 258 QGAALDAILEELREIKET-QALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASM 336 (455)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345689999988888654 456899999888754 2322 2223223333334444444444455666666555443
No 145
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.90 E-value=8.4 Score=43.51 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=24.4
Q ss_pred ChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 257 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 257 sQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.|+.+... .+.+...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 34444432 2334444445555567779999999998873
No 146
>PRK06547 hypothetical protein; Provisional
Probab=50.75 E-value=11 Score=37.42 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=19.4
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.++..+..+.--.|.-+|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444555455555666799999999876
No 147
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=50.65 E-value=6.3 Score=43.73 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=19.3
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.++..++. ....|+..|.||||||.+|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 33443333 34457888999999999984
No 148
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=50.18 E-value=6.6 Score=39.06 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57889999999999976
No 149
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=49.23 E-value=7.1 Score=36.32 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+..|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999986
No 150
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=49.20 E-value=11 Score=40.24 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=18.1
Q ss_pred CCceEEEeeccCCCCCcccc
Q 005116 276 RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM 295 (714)
.-+.+|.-||.-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999988
No 151
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.98 E-value=9.5 Score=42.30 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
+.|+-.|.||||||.++
T Consensus 174 ~NILisGGTGSGKTTlL 190 (355)
T COG4962 174 CNILISGGTGSGKTTLL 190 (355)
T ss_pred eeEEEeCCCCCCHHHHH
Confidence 77899999999999997
No 152
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=48.14 E-value=8.1 Score=38.86 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.2
Q ss_pred CCceEEEeeccCCCCCcccc
Q 005116 276 RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM 295 (714)
..-..+|..||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567899999999999887
No 153
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=47.93 E-value=12 Score=45.31 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 260 EVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 260 eVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.||..+-.-.-.-.-.+.|-||+-.|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 355443222222234589999999999999999996
No 154
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.69 E-value=8.6 Score=49.03 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
+..+++.+-+|...+++. -+||||||+||..
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 344455555676554444 8999999999854
No 155
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.67 E-value=10 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=19.0
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445668877 788899999999863
No 156
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.12 E-value=15 Score=39.41 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 261 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 261 Vy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|+...+.||+ ..+.--+..|--||+|++|||.++
T Consensus 177 l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 177 LCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3345567777 556677788999999999999987
No 157
>PRK13764 ATPase; Provisional
Probab=46.84 E-value=9.7 Score=45.34 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred ceEEEeeccCCCCCcccccC
Q 005116 278 KATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~G 297 (714)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999943
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.80 E-value=8.5 Score=41.35 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=15.8
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
---.|+-||++|+|||++-
T Consensus 150 APknVLFyGppGTGKTm~A 168 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred CcceeEEECCCCccHHHHH
Confidence 3456899999999999876
No 159
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=46.72 E-value=11 Score=44.06 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=22.9
Q ss_pred hhhhHHHHhcCC--ceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRT--KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~--N~tvfAYGqTGSGKTyTM 295 (714)
|+..++..+.|. ...++-+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 555566666554 356888999999999998
No 160
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.31 E-value=15 Score=41.57 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHhhhhhHHHHhcC----CceEEEeeccCCCCCcccc
Q 005116 259 DEVYRETVEPIVPIIFQR----TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 259 eeVy~~~v~plV~~vl~G----~N~tvfAYGqTGSGKTyTM 295 (714)
...|.....-+..++.+- ....|.-.|+||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444433 2566777899999999998
No 161
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=46.21 E-value=1.6e+02 Score=27.49 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005116 647 VEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNV 708 (714)
Q Consensus 647 ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee~ 708 (714)
+.++-.|.=+...+| .+.+|..-+.+.+..|..=|.+|.+.+.++.+++...+.-|.+-+.
T Consensus 17 aRq~e~~FlqKr~~L-S~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~ 77 (106)
T PF11594_consen 17 ARQMEAFFLQKRFEL-SAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQN 77 (106)
T ss_pred HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444554455555 7889999999999999999999999999999999999999887543
No 162
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.17 E-value=11 Score=42.45 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=18.0
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+..+++|.|. ++-++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 3456789884 56679999999763
No 163
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=46.15 E-value=15 Score=44.37 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=21.9
Q ss_pred hhhhhHHHHhc-----CCceEEEeeccCCCCCccccc
Q 005116 265 TVEPIVPIIFQ-----RTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 265 ~v~plV~~vl~-----G~N~tvfAYGqTGSGKTyTM~ 296 (714)
++..+++.+.. |.+..++.. .||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 46667777766 344555444 99999999994
No 164
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.13 E-value=7.5 Score=35.07 Aligned_cols=16 Identities=44% Similarity=0.353 Sum_probs=13.7
Q ss_pred EEeeccCCCCCccccc
Q 005116 281 CFAYGQTGSGKTYTMK 296 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~ 296 (714)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5778999999999874
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=45.97 E-value=14 Score=42.45 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=18.0
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.++..+..|.|. +-||++|+|||+..
T Consensus 186 ~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 186 TILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 344444455554 44999999999876
No 166
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.46 E-value=13 Score=42.56 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=18.8
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|..+++|.| |++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678887 677789999999763
No 167
>PLN03025 replication factor C subunit; Provisional
Probab=45.38 E-value=15 Score=39.87 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.5
Q ss_pred CCceEEEeeccCCCCCcccccC
Q 005116 276 RTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM~G 297 (714)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3333466699999999999843
No 168
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.25 E-value=8.7 Score=40.42 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457889999999999874
No 169
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=45.23 E-value=7.4 Score=43.30 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=30.8
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
...|.|+.|.+ |+++=.. |+..+.+-.-+.|+-+|.+|||||+++.
T Consensus 11 ~~~~pf~~ivG----q~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 11 RPVFPFTAIVG----QEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCCHHHHhC----hHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 34688988876 4443333 3334444333568899999999999884
No 170
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.67 E-value=2.1e+02 Score=28.11 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 005116 627 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA----HFQKR 702 (714)
Q Consensus 627 ~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~----~Fr~~ 702 (714)
+.+++|.++=..-.. .+.+.+-.++.|++.|...+.||. +.+.....+|..||.+|. .|+.+
T Consensus 50 a~~q~I~~~f~~~t~----~LRqqL~aKr~ELnALl~~~~pD~----------~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 50 AAWQKIHNDFYAQTS----ALRQQLVSKRYEYNALLTANPPDS----------SKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444432 233445667778877776667762 333444557777777776 44555
Q ss_pred HHHhh
Q 005116 703 LKEHN 707 (714)
Q Consensus 703 L~eee 707 (714)
++++.
T Consensus 116 ~~k~G 120 (143)
T PRK11546 116 MAEAG 120 (143)
T ss_pred HHHcC
Confidence 55543
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=44.63 E-value=15 Score=39.02 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=16.8
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999887
No 172
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=44.38 E-value=17 Score=40.40 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=21.4
Q ss_pred hhHHHHhcCC---ceEEEeeccCCCCCccccc
Q 005116 268 PIVPIIFQRT---KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 268 plV~~vl~G~---N~tvfAYGqTGSGKTyTM~ 296 (714)
|+++..+.|. --|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 6677778874 356665 999999998883
No 173
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.34 E-value=9.7 Score=42.77 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
...+.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999984
No 174
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=44.05 E-value=13 Score=43.33 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.4
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+.||.+++.+..-..+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 47889998876544444433 222 2357888999999999999865
No 175
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.44 E-value=13 Score=41.23 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=26.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 295 (714)
+||.|.+ |+.+-+ .+...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4666654 444433 333444444 3456789999999999887
No 176
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=42.93 E-value=20 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..+.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999983
No 177
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=42.09 E-value=10 Score=41.65 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
-...||+|||||++.+.
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34669999999999973
No 178
>PRK10536 hypothetical protein; Provisional
Probab=42.00 E-value=15 Score=39.24 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=25.5
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|.|-.|-+-+..|..... .+.+ +.-++..|++||||||..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred cCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 455555555444443332 2233 348999999999999987
No 179
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.62 E-value=16 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCceEEEeeccCCCCCccccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999999874
No 180
>PF05729 NACHT: NACHT domain
Probab=41.57 E-value=12 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.8
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999999883
No 181
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.48 E-value=1.5e+02 Score=31.26 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHH-HHhhhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 645 KQVEDTMNIVKEEM-NLLVEADQPGNQ---LDDYVSRLNAILSQKAAGIMQLQTQLAH 698 (714)
Q Consensus 645 ~~ie~~~e~~k~e~-~ll~~vD~~~~~---id~y~~~L~~il~~k~~~i~~L~~~l~~ 698 (714)
.....+++.|.+|. ..+.+.-+...| +++-+.+++.=..+..+.|.+|.+++..
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444443 343333333334 3444444443333333344444443333
No 182
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.10 E-value=15 Score=36.89 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.8
Q ss_pred HHHhcCC---ceEEEeeccCCCCCcccc
Q 005116 271 PIIFQRT---KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 271 ~~vl~G~---N~tvfAYGqTGSGKTyTM 295 (714)
|.++.|. ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556664 678899999999999765
No 183
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.09 E-value=18 Score=39.40 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=23.8
Q ss_pred CChHHHHHHhhhhhHHHHhc-C-CceEEEeeccCCCCCccccc
Q 005116 256 VSNDEVYRETVEPIVPIIFQ-R-TKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 256 asQeeVy~~~v~plV~~vl~-G-~N~tvfAYGqTGSGKTyTM~ 296 (714)
..|+++-+. +..++..... + ....++-||++|+|||+...
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 445555443 3333333322 2 22457789999999999884
No 184
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.00 E-value=17 Score=39.54 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHhcCCceEEEeeccCCCCCccccc
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.-....+.-++-||+.|||||.||.
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHHH
Confidence 3345677889999999999999983
No 185
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.97 E-value=12 Score=39.04 Aligned_cols=21 Identities=43% Similarity=0.679 Sum_probs=17.7
Q ss_pred ceEEEeeccCCCCCcccccCC
Q 005116 278 KATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~Gl 298 (714)
...++-||..|+|||++...+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999988554
No 186
>PRK14974 cell division protein FtsY; Provisional
Probab=40.83 E-value=29 Score=38.41 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.5
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678889999999999983
No 187
>PRK04195 replication factor C large subunit; Provisional
Probab=40.68 E-value=16 Score=42.07 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred hhhhHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555554 567889999999999987
No 188
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=40.40 E-value=19 Score=44.36 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=20.7
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 345677999998888 9999999874
No 189
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.30 E-value=15 Score=39.32 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
+--|+-.|++|||||-++
T Consensus 33 ~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp TEEEEEESSTTSSHHHHH
T ss_pred CCcEEEECCCCCchhHHH
Confidence 556799999999999887
No 190
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.02 E-value=18 Score=41.49 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 4455778887 466679999999764
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.01 E-value=2.9e+02 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 671 LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 704 (714)
Q Consensus 671 id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ 704 (714)
+..|..+|++.++...+.+.+|+.++.+.....+
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888887765544
No 192
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.83 E-value=29 Score=39.81 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=16.2
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
-..|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578888999999999983
No 193
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=39.33 E-value=20 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHH-hhhhhHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 259 DEVYRE-TVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 259 eeVy~~-~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
..-|+. ++..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344554 46778899999999865554 799999999754
No 194
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.04 E-value=12 Score=34.84 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=13.6
Q ss_pred EEeeccCCCCCccccc
Q 005116 281 CFAYGQTGSGKTYTMK 296 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~ 296 (714)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4668999999999874
No 195
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.76 E-value=11 Score=37.50 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.7
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+...+.| -+++-.|++|.|||..+-
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHHH
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHH
Confidence 3455667 466667999999999874
No 196
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.70 E-value=16 Score=43.71 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.3
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 688889999999874
No 197
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.54 E-value=28 Score=38.26 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=25.3
Q ss_pred HHHHHhhhhh-HHHHhcCCc---eEEEeeccCCCCCcccc
Q 005116 260 EVYRETVEPI-VPIIFQRTK---ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 260 eVy~~~v~pl-V~~vl~G~N---~tvfAYGqTGSGKTyTM 295 (714)
.+=+.++-|+ ..++|.|.. ..|+-||+.|+||+|.-
T Consensus 144 ALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 144 ALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred HHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 3334444443 346777755 67999999999999976
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.46 E-value=26 Score=36.97 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=19.8
Q ss_pred hhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 265 TVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 265 ~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+.+.++..+..|.+ |+-+|++|+|||...
T Consensus 10 l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 10 VTSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 33444555555654 456899999999876
No 199
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.35 E-value=65 Score=27.35 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee 707 (714)
++-|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778999999999999999999999999998744
No 200
>PF13173 AAA_14: AAA domain
Probab=38.16 E-value=14 Score=34.42 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
-.++-+|+.|+|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999998
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.01 E-value=2.9e+02 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005116 645 KQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKA-------AGIMQLQTQLAHFQKRLK 704 (714)
Q Consensus 645 ~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~-------~~i~~L~~~l~~Fr~~L~ 704 (714)
+.++..++-.+++++.|. .+.+.+..+|+++-+++. +.|..|++||..+--.|.
T Consensus 392 ~k~~kel~~~~E~n~~l~------knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 392 KKCQKELKEEREENKKLI------KNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 333444444444444443 334556666666555555 466666666665543333
No 202
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.88 E-value=25 Score=44.54 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55667899999999887
No 203
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=37.61 E-value=19 Score=42.28 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=28.2
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
-.|+.+++.+.. ++.+...++......|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 467777775422 233333445566677888999999999865
No 204
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.33 E-value=23 Score=38.45 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=21.7
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+.+++...+.+. ..++-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445666666554 466777999999999873
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=37.28 E-value=33 Score=38.42 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=25.8
Q ss_pred eecCCCCChHHHHHHhhhhhHHHHhcC---CceEEEeeccCCCCCcccc
Q 005116 250 AVLNEEVSNDEVYRETVEPIVPIIFQR---TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 250 ~VF~~~asQeeVy~~~v~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 295 (714)
.||+ +++.-+..+.-+ .....| .+..+.-.|++|||||...
T Consensus 52 ~~~G----~~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 52 DFFG----MEEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred hccC----cHHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 6766 444444444333 233333 4567888999999999865
No 206
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.71 E-value=19 Score=40.83 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.4
Q ss_pred CChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 256 VSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 256 asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..|+.+.-. .++|-.-+-.|.-...+-||+.|+|||..-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 346666644 455555555688888999999999999764
No 207
>PRK00295 hypothetical protein; Provisional
Probab=36.60 E-value=99 Score=26.32 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee 707 (714)
++=|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556777889999999999999999999999998744
No 208
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=36.15 E-value=15 Score=30.75 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999887
No 209
>PRK02119 hypothetical protein; Provisional
Probab=36.14 E-value=98 Score=26.74 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ee 706 (714)
++=|..|+.++-+....|..|+.+|..+..+|++-
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677899999999999999999999999999874
No 210
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=36.07 E-value=11 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488899999999999999866
No 211
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.91 E-value=20 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.9
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345778988 566889999999764
No 212
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=35.87 E-value=21 Score=42.90 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.++-.|+.|||||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999984
No 213
>PRK00736 hypothetical protein; Provisional
Probab=35.72 E-value=1e+02 Score=26.18 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee 707 (714)
++=|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677888999999999999999999999997644
No 214
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=35.59 E-value=15 Score=43.07 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999876
No 215
>PHA02244 ATPase-like protein
Probab=35.28 E-value=31 Score=38.87 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.1
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+...+-.|.+ |+-+|+||+|||+..
T Consensus 112 i~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 112 IAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3333334555 455899999999877
No 216
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.10 E-value=1e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ee 706 (714)
++=|..|+.++.+....|..|+.+|..+..+|++-
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677788999999999999999999999999874
No 217
>PRK04325 hypothetical protein; Provisional
Probab=35.03 E-value=2.3e+02 Score=24.54 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee 707 (714)
++=|..|+.++-+....|..|+.+|..+..+|++-+
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556778899999999999999999999999997744
No 218
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.97 E-value=21 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.6
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+..+++|.|..+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 3456789988654 559999999664
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.77 E-value=2e+02 Score=34.46 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=8.3
Q ss_pred EEEEEEEECCCC
Q 005116 417 VGKLSFIDLAGS 428 (714)
Q Consensus 417 ~skL~fVDLAGS 428 (714)
+--|.++||-|-
T Consensus 254 TtgiAvldldGe 265 (652)
T COG2433 254 TTGIAVLDLDGE 265 (652)
T ss_pred eeeEEEEecCCc
Confidence 345788888774
No 220
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.72 E-value=22 Score=43.47 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.3
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
-|-.|+.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888999999999886
No 221
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=18 Score=40.06 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=15.5
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
..+-|+..|+||||||+.-
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4456889999999999754
No 222
>PRK00846 hypothetical protein; Provisional
Probab=34.65 E-value=1.1e+02 Score=26.94 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee 707 (714)
++=|..|+.++.+....|..|+.+|..+..+|++=+
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888899989999999999999999998754
No 223
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=34.37 E-value=37 Score=41.16 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.9
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999997
No 224
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.30 E-value=23 Score=36.05 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.2
Q ss_pred hhHHHHhcC---CceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQR---TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G---~N~tvfAYGqTGSGKTyTM 295 (714)
+-++.++.| .+.+++.+|.+|||||...
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 446777765 6789999999999998643
No 225
>PHA02653 RNA helicase NPH-II; Provisional
Probab=34.20 E-value=28 Score=42.16 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.5
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyT 294 (714)
.++..+.+|.+ |+..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 34455566764 58999999999975
No 226
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.10 E-value=26 Score=36.04 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=23.3
Q ss_pred hhhhHHHHhcCC---ceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 295 (714)
.-+-++.++.|. ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 445567777753 678888899999999866
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.10 E-value=17 Score=41.48 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=14.8
Q ss_pred EEEeeccCCCCCcccccC
Q 005116 280 TCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~G 297 (714)
.++-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999843
No 228
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.08 E-value=37 Score=34.91 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhHHHHhc-CCceEEEeeccCCCCCcccc
Q 005116 259 DEVYRETVEPIVPIIFQ-RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 259 eeVy~~~v~plV~~vl~-G~N~tvfAYGqTGSGKTyTM 295 (714)
..+|..++.-|...+-. +....|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34454444444433333 34445566699999999977
No 229
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.07 E-value=23 Score=38.44 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHhcCCceEEEeeccCCCCCcccc
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+|-+|+.--|+|.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 556899999999999999999888
No 230
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=33.90 E-value=17 Score=35.40 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
...+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 456789999999999883
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.82 E-value=33 Score=39.16 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=15.9
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999984
No 232
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=33.44 E-value=36 Score=41.32 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred cCCceEEEeeccCCCCCccccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.|.|-||+.-|.+|||||.|..
T Consensus 91 ~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 91 KKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred cCCCceEEEecCCCCCchHHHH
Confidence 5899999999999999999973
No 233
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.41 E-value=29 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.5
Q ss_pred hhHHHHhcC-C--ceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQR-T--KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G-~--N~tvfAYGqTGSGKTyTM 295 (714)
+=++.++.| . ...+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 446777864 2 456889999999999876
No 234
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=33.36 E-value=17 Score=34.35 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.9
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
++-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999999875
No 235
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=33.32 E-value=24 Score=34.33 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEeeccCCCCCccccc------CCChhhHHHHHH
Q 005116 280 TCFAYGQTGSGKTYTMK------PLPLKASRDILR 308 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~------Gl~~~a~~dIf~ 308 (714)
.|+..|..|||||+... |+......++++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 46778999999999762 555444555443
No 236
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=33.18 E-value=39 Score=40.96 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.3
Q ss_pred cCCceEEEeeccCCCCCccccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.|.|-||+.-|.+|||||.|..
T Consensus 83 ~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 83 EKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred cCCCceEEEEcCCCCCeehHHH
Confidence 5899999999999999999973
No 237
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.87 E-value=2.6e+02 Score=32.60 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 626 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKE 656 (714)
Q Consensus 626 ~~~~~~ileeee~~~~~hr~~ie~~~e~~k~ 656 (714)
-+++++-++.+++.+..||..|....|-+++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~e 366 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTE 366 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999988777776665
No 238
>PRK04406 hypothetical protein; Provisional
Probab=32.82 E-value=1.2e+02 Score=26.42 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ee 706 (714)
++=|..|+.++-+....|..|+.+|..+..+|++-
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677899999999999999999999999999763
No 239
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=32.66 E-value=31 Score=40.19 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.0
Q ss_pred HHHHhcCCceEEEeeccCCCCCccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyT 294 (714)
+..++.|.| +++..+||||||.+
T Consensus 152 ip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHH
Confidence 456678887 57778999999965
No 240
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=32.43 E-value=26 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=21.4
Q ss_pred hhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 267 EPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 267 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
..++..++.+ ...++-.|.||||||.+|.
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 4455555554 3688889999999998873
No 241
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=32.35 E-value=39 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=20.0
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 689999999999999999997
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=32.22 E-value=21 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.1
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999876
No 243
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.17 E-value=41 Score=41.29 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 638 DLVNAHRKQVEDTMNIVKEEMNLLV 662 (714)
Q Consensus 638 ~~~~~hr~~ie~~~e~~k~e~~ll~ 662 (714)
+.--.+|.++|.-..++|.--..|.
T Consensus 672 a~W~~~~~~~~~~frll~~a~~~l~ 696 (767)
T PRK14723 672 ARWLLWAEAADGAFRTLRHAWDALP 696 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445688999988888887665555
No 244
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.16 E-value=24 Score=35.90 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhhHHHHhcC---CceEEEeeccCCCCCcccc
Q 005116 267 EPIVPIIFQR---TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 267 ~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 295 (714)
-+-+|.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556778886 5677889999999999876
No 245
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.09 E-value=19 Score=38.72 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCC----CCCCCCccccc----ccccc----CCcceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCC
Q 005116 457 ECIRALDNDQGH----IPFRGSKLTEV----LRDSF----VGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNN 524 (714)
Q Consensus 457 ~vI~AL~~~~~h----IPyRdSKLTrL----LrdsL----gGnsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~ 524 (714)
.|++||+..... =|| |.|--+ ||+-| ..-++|++.++ .+.+| .+++|+|+.-+..+..
T Consensus 145 Gv~RALAadP~ilLMDEPF--gALDpI~R~~lQ~e~~~lq~~l~kTivfVT-----HDidE---A~kLadri~vm~~G~i 214 (309)
T COG1125 145 GVARALAADPPILLMDEPF--GALDPITRKQLQEEIKELQKELGKTIVFVT-----HDIDE---ALKLADRIAVMDAGEI 214 (309)
T ss_pred HHHHHHhcCCCeEeecCCc--cccChhhHHHHHHHHHHHHHHhCCEEEEEe-----cCHHH---HHhhhceEEEecCCeE
Confidence 577888766542 254 223222 33322 12467888877 45555 5789999987765443
No 246
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=32.03 E-value=18 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
+.-++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 4467899999999998764
No 247
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.02 E-value=19 Score=41.85 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..+.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999994
No 248
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.84 E-value=24 Score=42.77 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 253 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 253 ~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.....|+++++.+...+ .+..++.+|+||||||.+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-------~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-------GFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCHHHHHHHHHHHhcc-------CCCcEEEECCCCChHHHHH
Confidence 33445666655533221 3345899999999999775
No 249
>PRK00131 aroK shikimate kinase; Reviewed
Probab=31.60 E-value=22 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
..|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999875
No 250
>PRK04328 hypothetical protein; Provisional
Probab=31.56 E-value=31 Score=36.15 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.4
Q ss_pred hhhHHHHhcC---CceEEEeeccCCCCCccc
Q 005116 267 EPIVPIIFQR---TKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 267 ~plV~~vl~G---~N~tvfAYGqTGSGKTyT 294 (714)
-+-++.++.| ...+++-+|.+|+|||..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3456788877 578899999999999854
No 251
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.48 E-value=2.5e+02 Score=25.47 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 670 QLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 705 (714)
Q Consensus 670 ~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~e 705 (714)
.+++.+..++.-+++=...+..|..+|..++.+|++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666777788888888877765
No 252
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=31.31 E-value=29 Score=38.41 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
++.+.+|.+..++...+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567788778888999999999874
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=55 Score=36.43 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.3
Q ss_pred CceEEEeeccCCCCCcccccC
Q 005116 277 TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM~G 297 (714)
.|-.|+..|+.|+|||....+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHH
Confidence 456678889999999998765
No 254
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.07 E-value=2e+02 Score=33.49 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=40.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh-hcCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 624 NSDDNLSALLQEEEDLVNAHRKQVEDTM---NIVKEEMNLLVE-ADQPGNQ----LDDYVSRLNAILSQKAAGIMQLQTQ 695 (714)
Q Consensus 624 ~~~~~~~~ileeee~~~~~hr~~ie~~~---e~~k~e~~ll~~-vD~~~~~----id~y~~~L~~il~~k~~~i~~L~~~ 695 (714)
...+.|..|+-+-.++ |+.++... +-+++|++-|+. -+..+.. ++.+-+.|.+-.++-.+.+.+|+.+
T Consensus 56 TP~DTlrTlva~~k~~----r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 56 TPADTLRTLVAEVKEL----RKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred CccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655444444 33333322 345556655541 1122222 3344444444444445577788888
Q ss_pred HHHHHHHHH
Q 005116 696 LAHFQKRLK 704 (714)
Q Consensus 696 l~~Fr~~L~ 704 (714)
|.+++.+|.
T Consensus 132 l~~l~~~l~ 140 (472)
T TIGR03752 132 IDQLQRRLA 140 (472)
T ss_pred HHHHHHHHh
Confidence 888888885
No 255
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=31.00 E-value=19 Score=41.70 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=28.5
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhc--C--CceEEEeeccCCCCCccccc
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQ--R--TKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~-~vl~--G--~N~tvfAYGqTGSGKTyTM~ 296 (714)
..+||.|.+.+...+++.+ .+..+-. ..+. | ..-.|+-||++|||||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4677877765443333332 2222111 0111 2 22358889999999999974
No 256
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=30.91 E-value=34 Score=34.79 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred hhhhHHHHhcCC---ceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 295 (714)
.-+-++.++.|. ...+.-+|.+|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345578888753 567899999999999876
No 257
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=30.76 E-value=32 Score=34.81 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred hhhhHHHHhcCC---ceEEEeeccCCCCCccccc
Q 005116 266 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 266 v~plV~~vl~G~---N~tvfAYGqTGSGKTyTM~ 296 (714)
.-+-++.++.|. ...+.-+|.+|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 345677888753 5677889999999998773
No 258
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=30.70 E-value=31 Score=40.51 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=31.2
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKT 292 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKT 292 (714)
...|+||.+.+....=.++- .++ .-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccHH
Confidence 35699999998754322222 222 335689999999999999995
No 259
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=30.58 E-value=24 Score=41.54 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
-||..|+|+|||||--
T Consensus 193 Ii~H~GPTNSGKTy~A 208 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA 208 (700)
T ss_pred EEEEeCCCCCchhHHH
Confidence 4899999999999986
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.41 E-value=22 Score=34.71 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=13.3
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999874
No 261
>PRK06696 uridine kinase; Validated
Probab=30.36 E-value=42 Score=34.38 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=20.1
Q ss_pred hhhhHHHHh---cCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIF---QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl---~G~N~tvfAYGqTGSGKTyTM 295 (714)
++.|.+.++ .+....|.--|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 334444443 345566777899999999876
No 262
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=30.24 E-value=31 Score=40.77 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=18.9
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+|..+++|.|+ ++.-+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 44567789874 55669999999874
No 263
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.24 E-value=26 Score=39.01 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.5
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
++..|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999887
No 264
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.17 E-value=3.2e+02 Score=23.90 Aligned_cols=66 Identities=33% Similarity=0.481 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 626 DDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPG--NQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRL 703 (714)
Q Consensus 626 ~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~--~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L 703 (714)
++.+..+.+.++.+ ...|+...+-+++ +.+++++. .+++.|+.+|..|-.+ +..|.+++...+.++
T Consensus 20 ~~~l~el~~sQ~~L----~~~i~~~~~~L~~----~~~~~~~~~~~~~~~y~~KL~~ikkr----m~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 20 DQQLQELRQSQEEL----LQQIDRLNEKLKE----LNEVEQINEPFDLDPYVKKLVNIKKR----MSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHhhhhhhHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45566666666666 2333333333333 33333333 3456699988887654 444444444444443
No 265
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=29.97 E-value=34 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
-..+--|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456678999999999984
No 266
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=29.95 E-value=24 Score=39.05 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 246 FVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 246 F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
|.|..|.+ |+++ ..-|+-.+++..-+-|+-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 44555544 4433 3445566667666678899999999999874
No 267
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=29.60 E-value=32 Score=32.91 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 268
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.60 E-value=36 Score=35.24 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.7
Q ss_pred hhHHHHhcC---CceEEEeeccCCCCCccc
Q 005116 268 PIVPIIFQR---TKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 268 plV~~vl~G---~N~tvfAYGqTGSGKTyT 294 (714)
+-++.++.| ...+++-+|.+|||||..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 445677764 457889999999999963
No 269
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=29.60 E-value=33 Score=40.84 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=17.1
Q ss_pred HHHHhcCCceEEEeeccCCCCCccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyT 294 (714)
|..+++|.++.| ..+||+|||.+
T Consensus 34 i~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 34 IDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHcCCCEEE--EcCCCchHHHH
Confidence 345668888644 57999999975
No 270
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.50 E-value=3.9e+02 Score=26.11 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 633 LQEEEDLVNAHRKQVEDTMNIVKEEMNL 660 (714)
Q Consensus 633 leeee~~~~~hr~~ie~~~e~~k~e~~l 660 (714)
|+.|-..+...+..++..+..++.|+.-
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777788778777777753
No 271
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.42 E-value=38 Score=41.01 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 253 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 253 ~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+...|+.+...+.. +.-.+...-++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 355566665555433 333455567899999999999865
No 272
>PHA01747 putative ATP-dependent protease
Probab=29.19 E-value=25 Score=39.58 Aligned_cols=95 Identities=17% Similarity=0.296 Sum_probs=56.2
Q ss_pred HHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEEeCCe------ee
Q 005116 261 VYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIYGGK------LF 334 (714)
Q Consensus 261 Vy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EIYnE~------v~ 334 (714)
++-.-+-|+|+.-..+.|.-++=.|+.||||||+..-+ ...+ . +-|++++ +|
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~ei------------s~fs---p-------~~iSGG~~TvA~LFy 230 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFVIL------------QELF---N-------FRYYTEPPTYANLVY 230 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHHHHh------------hhcC---C-------ceeeCCCCchHHheE
Confidence 33344667887666788888999999999999987321 1000 0 0013332 34
Q ss_pred cccCCcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcC
Q 005116 335 DLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSR 380 (714)
Q Consensus 335 DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R 380 (714)
|.-.....+.-+.| .|.+..+..+.-.+..++..+|+.+..+-
T Consensus 231 N~~t~~~GLVg~~D---~VaFDEVa~i~f~~~kdiv~IMKdYMesG 273 (425)
T PHA01747 231 DAKTNALGLVFLSN---GLIFDEIQTWKDSNMRAINSTLSTGMENC 273 (425)
T ss_pred ecCCCceeEEeecc---EEEEEccccccCCCHHHHHHHHHHHhhcc
Confidence 44444444444433 24444555555577788888888776653
No 273
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=29.19 E-value=45 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.0
Q ss_pred hhhhHHHHhc--CCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQ--RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~--G~N~tvfAYGqTGSGKTyTM 295 (714)
+..+++.+.. .....|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 67788999999999999876
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=29.17 E-value=22 Score=43.29 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=29.0
Q ss_pred eEEeeeecCCCCChHHHHHHhhhhhHH-HHhcC----CceEEEeeccCCCCCcccc
Q 005116 245 EFVFDAVLNEEVSNDEVYRETVEPIVP-IIFQR----TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 245 ~F~FD~VF~~~asQeeVy~~~v~plV~-~vl~G----~N~tvfAYGqTGSGKTyTM 295 (714)
.++||.|-+-+..-+.+.+.+..|+-. .++.. ....|+-||++|||||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777765443333443333333221 22222 1246889999999999876
No 275
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=29.15 E-value=24 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.5
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.++-.+.. +.-|+-.|.+|+|||...
T Consensus 56 ~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 56 AICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 34444433 445888999999999876
No 276
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.05 E-value=34 Score=42.59 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57788899999999987
No 277
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.03 E-value=27 Score=36.52 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
-+...+|++|||||.|+.
T Consensus 33 ~~~~~~GpagtGKtetik 50 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIK 50 (231)
T ss_dssp TEEEEESSTTSSHHHHHH
T ss_pred CCCCCcCCCCCCchhHHH
Confidence 344579999999999984
No 278
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.95 E-value=3.7e+02 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 005116 686 AAGIMQLQTQLAHFQKRLKEHNVL 709 (714)
Q Consensus 686 ~~~i~~L~~~l~~Fr~~L~eee~l 709 (714)
-.+|..+..+|..+.+++.++|..
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346777777788888888776653
No 279
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=28.90 E-value=21 Score=43.58 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.6
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
|.-++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5568889999999999994
No 280
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.87 E-value=4e+02 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 005116 669 NQLDDYVSRLNAILSQKA 686 (714)
Q Consensus 669 ~~id~y~~~L~~il~~k~ 686 (714)
.+|..++..|..+|++..
T Consensus 42 ~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 42 AQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 281
>PRK07261 topology modulation protein; Provisional
Probab=28.85 E-value=24 Score=34.75 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-.|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999866
No 282
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.65 E-value=23 Score=33.26 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 283
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=28.59 E-value=23 Score=34.52 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.|+-.|++|||||.++.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999999883
No 284
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.58 E-value=2.1e+02 Score=33.29 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 644 RKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQL 696 (714)
Q Consensus 644 r~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l 696 (714)
.+++|+.++.+|.|+.++. .-...++..|+.+.+++..|+++|
T Consensus 78 asELEKqLaaLrqElq~~s----------aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLN----------KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888887665 112234666666667777777776
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=28.50 E-value=23 Score=38.10 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
-++-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999876
No 286
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.48 E-value=2.8e+02 Score=26.74 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 636 EEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA 697 (714)
Q Consensus 636 ee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~ 697 (714)
.+.-+....+.++..+...|+|+.-+. ..+....++...=+.+|..+|..|+++|.
T Consensus 95 ~~~~l~~~~~~~~~~~k~~kee~~klk------~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 95 KERQLQKQLKSLEAKLKQEKEELQKLK------NQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444445666666666665444 35667777888888888888888888875
No 287
>CHL00181 cbbX CbbX; Provisional
Probab=28.36 E-value=23 Score=38.19 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.9
Q ss_pred EEeeccCCCCCccccc
Q 005116 281 CFAYGQTGSGKTYTMK 296 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~ 296 (714)
++-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999873
No 288
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=28.34 E-value=39 Score=41.88 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=20.7
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
...+++.+-++. .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 455666665444 4778999999999886
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.33 E-value=47 Score=38.10 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999983
No 290
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=28.33 E-value=26 Score=42.37 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=30.3
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..+.|+.+++....-..+.+. ++. +...+..|+-+|.+|||||+.-
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 346777777765433434333 222 3456788999999999999854
No 291
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.29 E-value=29 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=25.5
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCce-EEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKA-TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~-tvfAYGqTGSGKTyTM 295 (714)
+||.|.+ |+.+. +.|-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~vv----~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVLV----RILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 4566654 44333 2333333345444 7899999999999976
No 292
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.21 E-value=4.5e+02 Score=28.84 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 644 RKQVEDTMNIVKEEMNLLVE-ADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 704 (714)
Q Consensus 644 r~~ie~~~e~~k~e~~ll~~-vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ 704 (714)
...+.+-.+-|+.|...|+. ++.++..=.+++..|..-|..-...|..++.++.+++..|+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445444443 22344333455555555555555455544444444444443
No 293
>PRK14531 adenylate kinase; Provisional
Probab=28.19 E-value=23 Score=35.09 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999874
No 294
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.94 E-value=48 Score=36.39 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.7
Q ss_pred eEEEeeccCCCCCcccc-----------------------cCCChhhHHHHHHHHhhh
Q 005116 279 ATCFAYGQTGSGKTYTM-----------------------KPLPLKASRDILRLMHHT 313 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM-----------------------~Gl~~~a~~dIf~~i~~~ 313 (714)
-.|+-||..|+|||..- .|-.++.++.||+...+.
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 35889999999999654 255677888888877653
No 295
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.62 E-value=3.4e+02 Score=27.59 Aligned_cols=29 Identities=3% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 673 DYVSRLNAILSQKAAGIMQLQTQLAHFQK 701 (714)
Q Consensus 673 ~y~~~L~~il~~k~~~i~~L~~~l~~Fr~ 701 (714)
+|+....+..++....+.+|+++|...++
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555666666677777777766543
No 296
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.55 E-value=3.7e+02 Score=32.34 Aligned_cols=55 Identities=18% Similarity=0.415 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 645 KQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 645 ~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ee 706 (714)
..+++.+.+.+.=+.+|. +-++.+.+|+.+++...+.+..|..+....|..|-+|
T Consensus 373 ~~le~~~~l~~k~~~lL~-------d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e 427 (594)
T PF05667_consen 373 EELEEELKLKKKTVELLP-------DAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEE 427 (594)
T ss_pred HHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444334443 3367789999999999999999998888888877655
No 297
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=27.48 E-value=64 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.7
Q ss_pred hhhhHHHHhcC---CceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQR---TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G---~N~tvfAYGqTGSGKTyTM 295 (714)
.-+=++.++.| ...+++-.|++|+|||...
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~ 280 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 280 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHH
Confidence 44557888887 4578899999999999754
No 298
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=27.42 E-value=27 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999765
No 299
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.17 E-value=32 Score=40.93 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=26.4
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 295 (714)
+||.|.+ |+.|.+. |...+-.| ..-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666654 5554443 33333345 3445788999999999987
No 300
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.14 E-value=4.2e+02 Score=30.27 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 625 SDDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEM----NLL-VEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHF 699 (714)
Q Consensus 625 ~~~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~----~ll-~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~F 699 (714)
....+++|++|-.++-..| ..+++.++-||... .++ +..++--+..+--..+|+..++--+.+|..|+.+|+.-
T Consensus 210 ~~~~l~~~~~el~eik~~~-~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQ-SRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456666666665554444 34677777777633 222 23333334444445555555555555666666665544
Q ss_pred HH
Q 005116 700 QK 701 (714)
Q Consensus 700 r~ 701 (714)
..
T Consensus 289 EE 290 (395)
T PF10267_consen 289 EE 290 (395)
T ss_pred HH
Confidence 33
No 301
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.14 E-value=40 Score=40.95 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.6
Q ss_pred CceEEEeeccCCCCCcccc
Q 005116 277 TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM 295 (714)
....|+-||+.|+||||..
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 4567999999999999986
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.93 E-value=30 Score=37.06 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999983
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.86 E-value=2.8e+02 Score=31.58 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh
Q 005116 675 VSRLNAILSQKAA----GIMQLQTQLAHFQKRLKEHNV 708 (714)
Q Consensus 675 ~~~L~~il~~k~~----~i~~L~~~l~~Fr~~L~eee~ 708 (714)
+.+...+.++|-+ .|..||.+|.+++++|+|=|.
T Consensus 46 ~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 46 AARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666643 999999999999999998654
No 304
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=26.84 E-value=43 Score=34.15 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=20.9
Q ss_pred hhHHHHhc-C--CceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQ-R--TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~-G--~N~tvfAYGqTGSGKTyTM 295 (714)
+-++.++. | ...++.-+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566665 4 3567888999999999876
No 305
>PRK01172 ski2-like helicase; Provisional
Probab=26.81 E-value=37 Score=40.79 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHhcCCceEEEeeccCCCCCcccc
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+.+|.| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3467776 577789999999863
No 306
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.79 E-value=24 Score=38.62 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
..+|+-.|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3467889999999999994
No 307
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.68 E-value=55 Score=39.49 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=54.0
Q ss_pred eeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccccCCC-------------hhhHHHHHHHH
Q 005116 244 HEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLP-------------LKASRDILRLM 310 (714)
Q Consensus 244 ~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~-------------~~a~~dIf~~i 310 (714)
+.|....=|.+.-.|...|.. +++.+-+|.... +.+|.+|||||+++..+. ...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 3 KPFKLVSPYKPAGDQPQAIEE----LVEGIEAGEKHQ-TLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCcccccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 346666778888889887775 344444554333 378999999999984311 12234455555
Q ss_pred hhhccCcceEEEEEEEEEeCCeee
Q 005116 311 HHTYRSQGFQLFVSFFEIYGGKLF 334 (714)
Q Consensus 311 ~~~~~~~~~~V~vS~~EIYnE~v~ 334 (714)
..........+++|||.-|.-..|
T Consensus 78 ~~~~~~~~v~~f~s~~~~~~~~~~ 101 (652)
T PRK05298 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (652)
T ss_pred HHhcCCCeEEEeCChhhccCcccc
Confidence 444444457777888777765443
No 308
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.59 E-value=26 Score=43.84 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.0
Q ss_pred CceEEEeeccCCCCCcccccC
Q 005116 277 TKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 277 ~N~tvfAYGqTGSGKTyTM~G 297 (714)
.|+-.+..|+||||||++|..
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CcccEEEECCCCCCHHHHHHH
Confidence 477789999999999999943
No 309
>PRK08118 topology modulation protein; Reviewed
Probab=26.54 E-value=28 Score=34.22 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 688899999999643
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.52 E-value=35 Score=38.20 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|..-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999876
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.38 E-value=28 Score=39.47 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCCcccccC
Q 005116 278 KATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~G 297 (714)
.-.+.-.|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999999954
No 312
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=26.34 E-value=2.1e+02 Score=32.16 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.6
Q ss_pred CCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 255 ~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
...|..+++- +-+.++.|-.-.|+-.|+.|||||+.+
T Consensus 30 ~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 30 QDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred HHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 3445555543 234567898888999999999999987
No 313
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=26.32 E-value=24 Score=31.54 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.4
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999877
No 314
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.32 E-value=28 Score=39.74 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=16.2
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
...|...|++|+|||.|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567888999999999994
No 315
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.20 E-value=29 Score=29.11 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.8
Q ss_pred EEeeccCCCCCccccc
Q 005116 281 CFAYGQTGSGKTYTMK 296 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~ 296 (714)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999999873
No 316
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=26.18 E-value=30 Score=32.03 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35667899999999987
No 317
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.16 E-value=37 Score=39.08 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=26.1
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
+||.|++. +.+ +..+...+-.|. .-+++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 57777663 333 333444444553 345667999999999887
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.13 E-value=24 Score=33.94 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=11.5
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-.|.+|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 355799999998653
No 319
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=26.05 E-value=46 Score=40.56 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.4
Q ss_pred hhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 267 EPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 267 ~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..+|+.+| |.|..|.+ +||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 35777888 99976554 9999999874
No 320
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=26.03 E-value=55 Score=39.54 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred cCCceEEEeeccCCCCCccccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
.+.|-||+.-|.+|||||.|+.
T Consensus 83 ~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cCCCceEEEecCCCCCchHHHH
Confidence 5899999999999999999983
No 321
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.93 E-value=48 Score=36.55 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=20.0
Q ss_pred hhHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
.+.+.+-.|. .-.++-||+.|+|||++.
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444563 447888999999999877
No 322
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=5.4e+02 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005116 640 VNAHRKQVEDTMNIVKEEMNLLVEA 664 (714)
Q Consensus 640 ~~~hr~~ie~~~e~~k~e~~ll~~v 664 (714)
.+.|-.-++.+.+..++++++++++
T Consensus 43 ~nS~~efar~lS~~~~e~e~l~~~l 67 (246)
T KOG4657|consen 43 MNSLVEFARALSQSQVELENLKADL 67 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555533
No 323
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=25.81 E-value=54 Score=40.38 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.9
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999997
No 324
>PRK14127 cell division protein GpsB; Provisional
Probab=25.71 E-value=2.1e+02 Score=26.80 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 666 QPGNQ---LDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 705 (714)
Q Consensus 666 ~~~~~---id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~e 705 (714)
-.||+ +|+|...+-.=++.=...+..|++++.+++..|.+
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 45565555544444444555555555555555543
No 325
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=45 Score=39.98 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
--|+.||+.|+|||.+.
T Consensus 469 kGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ceEEEECCCCcchHHHH
Confidence 56999999999999875
No 326
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=25.60 E-value=50 Score=35.85 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 271 PIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 271 ~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
..+-.|. .-+++-||+.|+|||.+.
T Consensus 28 ~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 28 NAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3334553 456889999999999876
No 327
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=35 Score=36.85 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.7
Q ss_pred CCc--eEEEeeccCCCCCcccc
Q 005116 276 RTK--ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 276 G~N--~tvfAYGqTGSGKTyTM 295 (714)
|.. -.|+.||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 544 45899999999999654
No 328
>PHA02624 large T antigen; Provisional
Probab=25.44 E-value=52 Score=39.44 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHhcCCce--EEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKA--TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~--tvfAYGqTGSGKTyTM 295 (714)
++.++.|... |++-||+.|||||+-.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5667777444 9999999999999765
No 329
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.40 E-value=37 Score=38.21 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=24.5
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCc-eEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK-ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N-~tvfAYGqTGSGKTyTM 295 (714)
.||.|++ |+.+- +.|...+-+|.- -+++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~----~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHIT----RTIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHH----HHHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5666665 44332 223333334433 34777999999999876
No 330
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.33 E-value=49 Score=38.36 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.9
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCCc-eEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRTK-ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N-~tvfAYGqTGSGKTyTM 295 (714)
+||.|.+ |+.+ .+.|...+-.|.- ..++-||+.|+|||.+.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666665 4444 2333333334533 45789999999999987
No 331
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.33 E-value=38 Score=40.80 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.2
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999985
No 332
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.31 E-value=31 Score=31.96 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999864
No 333
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=25.25 E-value=94 Score=35.21 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
..+++|+.||+|||+.
T Consensus 26 ~~i~~G~rGS~KSy~~ 41 (414)
T COG1783 26 YFIAKGGRGSSKSYAT 41 (414)
T ss_pred EEEEEccCCCchhHHH
Confidence 5899999999999997
No 334
>PTZ00110 helicase; Provisional
Probab=25.22 E-value=40 Score=39.64 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.2
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+..++.|.+. ++..+||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 3456789876 56679999999763
No 335
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=25.16 E-value=28 Score=31.53 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
-|.-+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999976
No 336
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=24.97 E-value=46 Score=34.84 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHhcC---CceEEEeeccCCCCCccc
Q 005116 270 VPIIFQR---TKATCFAYGQTGSGKTYT 294 (714)
Q Consensus 270 V~~vl~G---~N~tvfAYGqTGSGKTyT 294 (714)
++.++.| ....++-||..|||||..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4566665 567889999999999954
No 337
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=24.76 E-value=40 Score=34.13 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 005116 639 LVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAIL 682 (714)
Q Consensus 639 ~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il 682 (714)
.+..+++.....+++.++.. .+..+|.- .++++-...+.++|
T Consensus 168 Rl~~y~~~~~~v~~~y~~~~-~~~~id~~-~~~~~v~~~i~~~l 209 (210)
T TIGR01351 168 RLEVYKEQTEPLIDYYKKRG-ILVQIDGN-GPIDEVWKRILEAL 209 (210)
T ss_pred HHHHHHHhhHHHHHHHHhCC-CEEEEECC-CCHHHHHHHHHHhh
Confidence 44445556666677766543 45556532 35666555555544
No 338
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.72 E-value=30 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999775
No 339
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=24.69 E-value=36 Score=40.69 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=19.3
Q ss_pred hHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
|...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333444554 336888999999999987
No 340
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=24.67 E-value=48 Score=35.72 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=22.7
Q ss_pred hhhhHHHHhcCC---ceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRT---KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 295 (714)
..+-++.++.|. ...+.-||.+|||||..+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 334567777763 566789999999999876
No 341
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.59 E-value=1.8e+02 Score=29.40 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 627 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 705 (714)
Q Consensus 627 ~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~e 705 (714)
+.+.++|+....-+......++.+++.|+.=..-|. ..-.....-+.++..+|.-....|..|+.+|..++...++
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~---~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQ---KDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444555544443222222 2223456778889999999999999999999998766543
No 342
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=24.43 E-value=51 Score=39.45 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 253 NEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 253 ~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+...|+.+...+... .-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 3445566665554433 22334445789999999999865
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=24.42 E-value=73 Score=36.61 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567788999999999983
No 344
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.41 E-value=5e+02 Score=26.83 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcCCCC----------CHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 644 RKQVEDTMNIVKEEMNLLVE-ADQPGN----------QLDDYVSRLNAILSQKAAGIMQLQ 693 (714)
Q Consensus 644 r~~ie~~~e~~k~e~~ll~~-vD~~~~----------~id~y~~~L~~il~~k~~~i~~L~ 693 (714)
+.++|.+++.++++..-|.+ .-.++. .|++=|..|+..|..|.+++..|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777777776654432 111221 145566677777777777766665
No 345
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.36 E-value=32 Score=33.44 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999765
No 346
>CHL00195 ycf46 Ycf46; Provisional
Probab=24.35 E-value=31 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
.-.|+-||+.|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999877
No 347
>PRK13767 ATP-dependent helicase; Provisional
Probab=24.32 E-value=43 Score=41.83 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=17.0
Q ss_pred HHHhcCCceEEEeeccCCCCCcccc
Q 005116 271 PIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 271 ~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
..+++|.|+.| ..+||||||...
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34568888654 569999999863
No 348
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.17 E-value=29 Score=34.56 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999988
No 349
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=24.17 E-value=34 Score=41.79 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=23.4
Q ss_pred hhHHHHhcCCceEEEeeccCCCCCcccccCC
Q 005116 268 PIVPIIFQRTKATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 268 plV~~vl~G~N~tvfAYGqTGSGKTyTM~Gl 298 (714)
.+++-+..+....++-||++|+|||....++
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 4555555566667889999999999998654
No 350
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.15 E-value=5.8e+02 Score=29.06 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 005116 675 VSRLNAILSQKA----AGIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 675 ~~~L~~il~~k~----~~i~~L~~~l~~Fr~~L~eee 707 (714)
+.++..+.++|- ..|.+|+.+|.+++++|+|=|
T Consensus 82 ~~rIkq~FEkkNqksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 82 VARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555543 399999999999999999866
No 351
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.10 E-value=3.3e+02 Score=27.64 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 627 DNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLV-EADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 705 (714)
Q Consensus 627 ~~~~~ileeee~~~~~hr~~ie~~~e~~k~e~~ll~-~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~e 705 (714)
..++.+|-++=+-....-.++.+.+.-++.+...+. +..............+...+......+..|+.++..||.++.|
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~e 159 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAE 159 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 455666544444444444445555555555554432 3334444455666667777777777899999999999988875
No 352
>PRK08233 hypothetical protein; Provisional
Probab=23.93 E-value=33 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 353
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=23.87 E-value=34 Score=32.46 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.2
Q ss_pred eEEEeeccCCCCCcccccCC
Q 005116 279 ATCFAYGQTGSGKTYTMKPL 298 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~Gl 298 (714)
.+|+-+|.-|+|||+-..|+
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l 35 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGL 35 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999988653
No 354
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=23.69 E-value=61 Score=37.06 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
-++.|-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 357788999999999999999999987
No 355
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.60 E-value=30 Score=34.60 Aligned_cols=15 Identities=40% Similarity=0.353 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999875
No 356
>PRK09039 hypothetical protein; Validated
Probab=23.52 E-value=4.7e+02 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 638 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQL 696 (714)
Q Consensus 638 ~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l 696 (714)
+-+...+..|+..++..+++..-.+ ..|+++-..|+..|.+|...+..++.++
T Consensus 147 ~aLr~Qla~le~~L~~ae~~~~~~~------~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 147 AALRRQLAALEAALDASEKRDRESQ------AKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333445555555555555443222 4578888888888888888888888765
No 357
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=23.52 E-value=24 Score=36.46 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.9
Q ss_pred eccCCCCCcccc
Q 005116 284 YGQTGSGKTYTM 295 (714)
Q Consensus 284 YGqTGSGKTyTM 295 (714)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999988
No 358
>CHL00176 ftsH cell division protein; Validated
Probab=23.47 E-value=50 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999873
No 359
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.39 E-value=90 Score=39.09 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=14.3
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
.+..+-+|+||||||.-+
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345567899999999876
No 360
>PRK06217 hypothetical protein; Validated
Probab=23.36 E-value=34 Score=33.84 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=13.0
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999999765
No 361
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=23.22 E-value=27 Score=39.20 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=0.0
Q ss_pred EEeeccCCCCCcccccC
Q 005116 281 CFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 281 vfAYGqTGSGKTyTM~G 297 (714)
+++||..|||||+++..
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999854
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=23.20 E-value=40 Score=33.93 Aligned_cols=31 Identities=35% Similarity=0.366 Sum_probs=24.1
Q ss_pred EeeccCCCCCcccc------cCCChhhHHHHHHHHhh
Q 005116 282 FAYGQTGSGKTYTM------KPLPLKASRDILRLMHH 312 (714)
Q Consensus 282 fAYGqTGSGKTyTM------~Gl~~~a~~dIf~~i~~ 312 (714)
---|+.|||||..- .|+..-..+.+|+.+..
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR 40 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence 34589999999764 57777778888888764
No 363
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=23.16 E-value=28 Score=39.12 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
.-++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346888999999998774
No 364
>PRK00300 gmk guanylate kinase; Provisional
Probab=23.02 E-value=36 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.5
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
...|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778899999999765
No 365
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.00 E-value=46 Score=40.80 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=20.6
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccccC
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~G 297 (714)
.|..++.+ +..++-.|..|+||||+|..
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 34455555 34677889999999999854
No 366
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=22.96 E-value=68 Score=39.47 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhHHHHhcCC------ceEEEeeccCCCCCccc
Q 005116 258 NDEVYRETVEPIVPIIFQRT------KATCFAYGQTGSGKTYT 294 (714)
Q Consensus 258 QeeVy~~~v~plV~~vl~G~------N~tvfAYGqTGSGKTyT 294 (714)
|++.-.. +...|.....|. .++++-+|+||+|||++
T Consensus 463 Q~~ai~~-l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~l 504 (758)
T PRK11034 463 QDKAIEA-LTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_pred cHHHHHH-HHHHHHHHhccccCCCCCcceEEEECCCCCCHHHH
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=22.89 E-value=35 Score=33.17 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999865
No 368
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=22.84 E-value=27 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.6
Q ss_pred cCCceEEEeeccCCCCCcccccCCChh
Q 005116 275 QRTKATCFAYGQTGSGKTYTMKPLPLK 301 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM~Gl~~~ 301 (714)
.++|. +-.|++|+||||...++.+.
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 56664 66799999999988654443
No 369
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.70 E-value=6e+02 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005116 636 EEDLVNAHRKQVEDTMNIVKEEMNLLV 662 (714)
Q Consensus 636 ee~~~~~hr~~ie~~~e~~k~e~~ll~ 662 (714)
.+++++.-.-.+.+-.+-|+.|...|+
T Consensus 166 ~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 166 ELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444445555555554
No 370
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=22.65 E-value=5.1e+02 Score=30.18 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhh-----hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005116 627 DNLSALLQEEEDLVNAHRKQVEDTMN----------IVKEEMNLLV-----EADQPGNQLDDYVSRLNAILSQKAAGIMQ 691 (714)
Q Consensus 627 ~~~~~ileeee~~~~~hr~~ie~~~e----------~~k~e~~ll~-----~vD~~~~~id~y~~~L~~il~~k~~~i~~ 691 (714)
.++++-|+.--.+++...+++++... -+|-.--.|+ ++++.+..+ .++..+++.|.+|.++|.+
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv-sqclEmdk~LskKeeever 464 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV-SQCLEMDKTLSKKEEEVER 464 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 34455555555555555666655432 1111112232 444444433 4556799999999998888
Q ss_pred HHH
Q 005116 692 LQT 694 (714)
Q Consensus 692 L~~ 694 (714)
||.
T Consensus 465 LQ~ 467 (527)
T PF15066_consen 465 LQQ 467 (527)
T ss_pred HHH
Confidence 773
No 371
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.64 E-value=6.1e+02 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 005116 667 PGNQLDDYVSRLNAILSQKAA---GIMQLQTQLAHFQKRLKEHN 707 (714)
Q Consensus 667 ~~~~id~y~~~L~~il~~k~~---~i~~L~~~l~~Fr~~L~eee 707 (714)
.+..+.....+....+.+-.+ +|..|+.++.++++...+.+
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666665 89999999999988877654
No 372
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.64 E-value=72 Score=36.18 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=18.8
Q ss_pred hHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
.|..++.|.++. +.-+||||||-+.
T Consensus 91 aiP~~L~g~dvI--glAeTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVI--GLAETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEE--EEeccCCCchhhh
Confidence 345678898864 4459999999775
No 373
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.57 E-value=43 Score=39.17 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=25.7
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcC-CceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G-~N~tvfAYGqTGSGKTyTM 295 (714)
+||.|.+ |+.|-+ -|...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 4666654 554443 333333344 4456789999999999876
No 374
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.43 E-value=47 Score=42.01 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 005116 647 VEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAA--------GIMQLQTQLAHFQKRL 703 (714)
Q Consensus 647 ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~--------~i~~L~~~l~~Fr~~L 703 (714)
....++.+..|..+.. .|.-.-|-||.+..++=..-.. +-...+++|...-+.|
T Consensus 880 ~~~~~~~~~~e~~~~~---~p~~ra~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (988)
T PRK13889 880 PARAIRALQLETELRT---DPARRADRFVERWQKLDRASQRQYQAGDMSGYKATRAAMGDMAKSL 941 (988)
T ss_pred HHHHHHHHHHHHHHhc---ChhhhhHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 3455677777777766 7777788898888776655442 4556666665554444
No 375
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=22.42 E-value=55 Score=34.58 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.3
Q ss_pred CCceEEEeeccCCCCCcccc
Q 005116 276 RTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 276 G~N~tvfAYGqTGSGKTyTM 295 (714)
-....|+..|.||+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45678899999999999987
No 376
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.35 E-value=6e+02 Score=29.15 Aligned_cols=62 Identities=10% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005116 645 KQVEDTMNIVKEEMNLLVEADQP---GNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 645 ~~ie~~~e~~k~e~~ll~~vD~~---~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ee 706 (714)
+.+++.++-++.....|...... ......-...+..-+.+..+.+..|++++.+++..|+.-
T Consensus 344 ~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 344 EELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555554444432222 222344444555555555568888888888887777654
No 377
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=22.26 E-value=64 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 255 ~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3456554443 3344456754 466679999999887
No 378
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=22.26 E-value=64 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 255 ~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3456554443 3344456754 466679999999887
No 379
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.19 E-value=57 Score=35.25 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
-.|+.||+.|+|||..-
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 35899999999999653
No 380
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=22.14 E-value=39 Score=37.85 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
---|.-||..|.|||+.|
T Consensus 62 ~~GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM 79 (362)
T ss_pred CceEEEECCCCCchhHHH
Confidence 345899999999999999
No 381
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=22.02 E-value=35 Score=41.53 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.0
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
|.-.+..|.||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 7778999999999999984
No 382
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=21.96 E-value=42 Score=40.11 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=19.6
Q ss_pred hhHHHHhcC-CceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQR-TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G-~N~tvfAYGqTGSGKTyTM 295 (714)
.+...+-.| ..-+++-||+.|+|||.++
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333344344 3346889999999999887
No 383
>PRK04040 adenylate kinase; Provisional
Probab=21.96 E-value=39 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5788999999999876
No 384
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=21.93 E-value=56 Score=37.24 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCcccc
Q 005116 279 ATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM 295 (714)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999987
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.87 E-value=40 Score=34.54 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
.+.-.|+.|||||.+|.
T Consensus 27 i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 27 FSAIVGPNGSGKSNVID 43 (212)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999983
No 386
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=21.86 E-value=58 Score=39.21 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=21.9
Q ss_pred hHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 258 NDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 258 QeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
|.++++.+...+ -+ +..+++-.+||||||+..
T Consensus 2 Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 667776644333 23 356888999999999654
No 387
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=21.76 E-value=39 Score=38.51 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 466999999999999876
No 388
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.65 E-value=4.2e+02 Score=27.85 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 626 DDNLSALLQEEEDLVNAHRKQVEDTMN--------IVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLA 697 (714)
Q Consensus 626 ~~~~~~ileeee~~~~~hr~~ie~~~e--------~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~ 697 (714)
...+..+.++-+.+ +..|++.++ .+.+-...+......-..+...+.++.+.++++.+.+..+++.|.
T Consensus 26 ~~~l~~~~~~~~~l----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 26 RSELQQLKEENEEL----RRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 005116 698 HFQKRLK 704 (714)
Q Consensus 698 ~Fr~~L~ 704 (714)
.-+..|.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
No 389
>PRK02496 adk adenylate kinase; Provisional
Probab=21.64 E-value=50 Score=32.47 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEeeccCCCCCcccc------cCCChhhHHHHHHH
Q 005116 281 CFAYGQTGSGKTYTM------KPLPLKASRDILRL 309 (714)
Q Consensus 281 vfAYGqTGSGKTyTM------~Gl~~~a~~dIf~~ 309 (714)
|+-.|+.|||||... .|+......++++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 667899999999865 35444444455443
No 390
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.61 E-value=44 Score=36.51 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|+||||||-.-
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 6888999999999743
No 391
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.56 E-value=4.6e+02 Score=26.13 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005116 688 GIMQLQTQLAHFQKRLKEH 706 (714)
Q Consensus 688 ~i~~L~~~l~~Fr~~L~ee 706 (714)
....|+.++..++++|++|
T Consensus 81 ~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 81 ENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666654
No 392
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=21.44 E-value=39 Score=38.50 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
...|+-+|+||+|||+..
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 357999999999999887
No 393
>PRK14532 adenylate kinase; Provisional
Probab=21.43 E-value=45 Score=32.87 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 394
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=21.42 E-value=36 Score=35.73 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|.-.|++|||||..|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999887
No 395
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=21.42 E-value=3.7e+02 Score=29.40 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhcC---CCC-CHHHHHHHHHHHHHH
Q 005116 644 RKQVEDTMNIV-KEEMNLLVEADQ---PGN-QLDDYVSRLNAILSQ 684 (714)
Q Consensus 644 r~~ie~~~e~~-k~e~~ll~~vD~---~~~-~id~y~~~L~~il~~ 684 (714)
|..+.++++.+ .+|.+||..|+. ++| .|..-...|+++|.+
T Consensus 41 r~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqR 86 (324)
T PF12126_consen 41 RARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQR 86 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56666777744 455677776652 332 255556667777655
No 396
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=21.41 E-value=55 Score=41.17 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=20.3
Q ss_pred hhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 266 VEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 266 v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
+.++..+.-.+...-++..|+||||||-+.
T Consensus 460 I~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 460 IEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 334444444455456789999999999765
No 397
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=21.39 E-value=65 Score=35.00 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred hhhHHHHhcCC---ceEEEeeccCCCCCcccc
Q 005116 267 EPIVPIIFQRT---KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 267 ~plV~~vl~G~---N~tvfAYGqTGSGKTyTM 295 (714)
-+-++.++.|. ...+.-||.+|||||...
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 34456677753 667788999999999876
No 398
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=21.25 E-value=39 Score=33.51 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 399
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.23 E-value=40 Score=31.72 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=17.2
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367778899999999999876
No 400
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.20 E-value=4.7e+02 Score=30.52 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC----C--------CCCH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005116 642 AHRKQVEDTMNIVKEEMNLLVEADQ----P--------GNQL-------DDYVSRLNAILSQKAA---GIMQLQTQLAHF 699 (714)
Q Consensus 642 ~hr~~ie~~~e~~k~e~~ll~~vD~----~--------~~~i-------d~y~~~L~~il~~k~~---~i~~L~~~l~~F 699 (714)
..+..+++..+.++...++|...-. + ..++ +.|-.++..+..++.+ .+..|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 85 AELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777666653331 1 1133 3344445444444443 667777777777
Q ss_pred HHHHH
Q 005116 700 QKRLK 704 (714)
Q Consensus 700 r~~L~ 704 (714)
+.+|.
T Consensus 165 ~~~l~ 169 (525)
T TIGR02231 165 QNELN 169 (525)
T ss_pred HHHHH
Confidence 77764
No 401
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.11 E-value=94 Score=35.72 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCCccccc
Q 005116 278 KATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~ 296 (714)
...|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999983
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.08 E-value=74 Score=38.89 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
++++-+|+||+|||++..
T Consensus 485 ~~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAK 502 (731)
T ss_pred eeEEEECCCCccHHHHHH
Confidence 568899999999998773
No 403
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.00 E-value=49 Score=40.06 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.2
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
+||.|++ |+.+ ++.|...+-.|. .-.++-||+.|+|||.+.
T Consensus 13 tFddVIG----Qe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVG----QNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666665 4433 333333333453 457788999999999876
No 404
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.98 E-value=7.3e+02 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 677 RLNAILSQKAAGIMQLQTQLAHFQKR 702 (714)
Q Consensus 677 ~L~~il~~k~~~i~~L~~~l~~Fr~~ 702 (714)
+.+..|++-.+.|..|+......+..
T Consensus 52 ~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 52 KEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=20.89 E-value=32 Score=35.16 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=21.9
Q ss_pred ceEEEeeccCCCCCcccccCCChhhHH
Q 005116 278 KATCFAYGQTGSGKTYTMKPLPLKASR 304 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~Gl~~~a~~ 304 (714)
.+.|..||.+|.|||+...|+..+++.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 468999999999999998886555543
No 406
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=20.88 E-value=43 Score=34.02 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCCcccccC
Q 005116 278 KATCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM~G 297 (714)
+..+.-.|++|||||..|..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDA 47 (213)
T ss_pred cCEEEEECCCCCCHHHHHHH
Confidence 33566789999999999843
No 407
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=20.81 E-value=38 Score=37.59 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
+.-.|++|||||.++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999998
No 408
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=20.79 E-value=36 Score=36.67 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=20.5
Q ss_pred hhHHHHhcC---CceEEEeeccCCCCCcccc
Q 005116 268 PIVPIIFQR---TKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 268 plV~~vl~G---~N~tvfAYGqTGSGKTyTM 295 (714)
.++-.++.| ....+|.||..|+|||..+
T Consensus 63 ~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 63 RVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 334444454 4477999999999999887
No 409
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=20.77 E-value=7.5e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 638 DLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKE 705 (714)
Q Consensus 638 ~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~e 705 (714)
+=+..|-.++-....-||++..... . .|+ +- + ..-+.+....+..|+++|.+|++.|.+
T Consensus 9 ~e~~~~E~qL~~a~qkl~da~~~~e-~-dpD----~~--n-k~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 9 EEITQHEQQLVIARQKLKDAEKQYE-K-DPD----DV--N-KSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H--------HH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CCh----HH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777776655332 1 222 11 1 234566677888999999999988875
No 410
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=20.75 E-value=50 Score=38.64 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred ceeEEeeeecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCcccc
Q 005116 243 KHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 243 ~~~F~FD~VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM 295 (714)
...+.||.+++....-..+.+.+ .. +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 35689999988654333333331 12 2346778999999999999865
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=20.63 E-value=1.2e+02 Score=33.33 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHHhcCCceEEEeeccCCCCCcccccCCChhhHHHHHHHHhhhccCcceEEEEEEEEE-eCCeeecccCCcccceeEec
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEI-YGGKLFDLLSDRKKLCMRED 348 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~Gl~~~a~~dIf~~i~~~~~~~~~~V~vS~~EI-YnE~v~DLL~~~~~l~ired 348 (714)
+...|.|. .+|| -||+|-|||..+--+.+......-..-+...++.+-+-.+.+|.+ -++.|.|=
T Consensus 158 l~~~l~~~-~svl-~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDT------------ 223 (301)
T COG1162 158 LAELLAGK-ITVL-LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDT------------ 223 (301)
T ss_pred HHHHhcCC-eEEE-ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeC------------
Confidence 44667777 4444 499999999988544432222111111222245556666767777 35555553
Q ss_pred CCCcEEEeccEEEEe--CCHHHHHHHHHHh
Q 005116 349 GKQQVCIVGLQEYKV--SDVETIKELIEKG 376 (714)
Q Consensus 349 ~~~~v~v~gLte~~V--~s~ee~~~lL~~g 376 (714)
.|..++.+ -+.+++...+..-
T Consensus 224 -------PGf~~~~l~~~~~e~l~~~F~ef 246 (301)
T COG1162 224 -------PGFRSLGLAHLEPEDLVQAFPEF 246 (301)
T ss_pred -------CCCCccCcccCCHHHHHHHhHHH
Confidence 35555555 5667776666544
No 412
>PRK06851 hypothetical protein; Provisional
Probab=20.62 E-value=1.1e+02 Score=34.40 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.0
Q ss_pred hHHHHhcCCceEEEeeccCCCCCccccc
Q 005116 269 IVPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 269 lV~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
+.+.++.+.+-.++--|..|+|||++|.
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3455667788889999999999999993
No 413
>PRK11637 AmiB activator; Provisional
Probab=20.61 E-value=5.1e+02 Score=29.42 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005116 672 DDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLK 704 (714)
Q Consensus 672 d~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~ 704 (714)
..-+..++.-+++..+.|..++.++.+.+..|.
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554
No 414
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=20.58 E-value=44 Score=40.00 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCCcccc
Q 005116 278 KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 278 N~tvfAYGqTGSGKTyTM 295 (714)
.+-++..|..|||||.||
T Consensus 14 ~~~~~V~Ag~GSGKT~~L 31 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVI 31 (664)
T ss_pred CCCEEEEecCCCCHHHHH
Confidence 445788899999999998
No 415
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.56 E-value=35 Score=30.68 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.7
Q ss_pred EEeeccCCCCCcccc
Q 005116 281 CFAYGQTGSGKTYTM 295 (714)
Q Consensus 281 vfAYGqTGSGKTyTM 295 (714)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 466899999999876
No 416
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.53 E-value=42 Score=34.03 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.1
Q ss_pred EEEeeccCCCCCccccc
Q 005116 280 TCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~ 296 (714)
+++-+|++|+|||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 77889999999999873
No 417
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=20.51 E-value=41 Score=35.31 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=12.2
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.+.-+|+||||||..-
T Consensus 3 v~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEEE-STTSSHHHHH
T ss_pred EEEEECCCCCChhHHH
Confidence 3567899999999865
No 418
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.42 E-value=52 Score=39.24 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=17.9
Q ss_pred HHHHhcCCceEEEeeccCCCCCccccc
Q 005116 270 VPIIFQRTKATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 270 V~~vl~G~N~tvfAYGqTGSGKTyTM~ 296 (714)
|..++. +..++-.|..|||||||+.
T Consensus 154 ~~~al~--~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 154 VALALK--SNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHhh--CCeEEEEcCCCCCHHHHHH
Confidence 444444 3456678999999999973
No 419
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.39 E-value=1.2e+02 Score=33.10 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEEeeccCCCCCccccc-----C------CChhhHHHHHHHHh
Q 005116 280 TCFAYGQTGSGKTYTMK-----P------LPLKASRDILRLMH 311 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~-----G------l~~~a~~dIf~~i~ 311 (714)
.|+.-|.+|||||..|. | +|+..+..+...+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 47788999999999982 3 55555555555544
No 420
>PTZ00014 myosin-A; Provisional
Probab=20.37 E-value=88 Score=38.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.6
Q ss_pred cCCceEEEeeccCCCCCcccc
Q 005116 275 QRTKATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 275 ~G~N~tvfAYGqTGSGKTyTM 295 (714)
.+.|-||+.-|.+|+|||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999886
No 421
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.34 E-value=40 Score=37.68 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=11.7
Q ss_pred eeccCCCCCcccc
Q 005116 283 AYGQTGSGKTYTM 295 (714)
Q Consensus 283 AYGqTGSGKTyTM 295 (714)
-.|++|||||+++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999998
No 422
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.33 E-value=71 Score=36.46 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=33.2
Q ss_pred ccccceeEEeeeecCCCCChHHHHHHhhh-------hhH----HHHhcCCceEEEeeccCCCCCc--ccccC
Q 005116 239 EYVEKHEFVFDAVLNEEVSNDEVYRETVE-------PIV----PIIFQRTKATCFAYGQTGSGKT--YTMKP 297 (714)
Q Consensus 239 ~~~~~~~F~FD~VF~~~asQeeVy~~~v~-------plV----~~vl~G~N~tvfAYGqTGSGKT--yTM~G 297 (714)
.+..+-..+||.+|... .+|.+.+-+ |+- .-+|+|.+++..| |||+||| |.|.|
T Consensus 212 rpIPnP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~L~pg 278 (629)
T KOG0336|consen 212 RPIPNPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAFLLPG 278 (629)
T ss_pred ccCCCCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHHhccc
Confidence 33455678999999753 344443322 111 1357899876554 9999999 45555
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.30 E-value=46 Score=40.92 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.++-||++|+|||++.
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999876
No 424
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=20.27 E-value=56 Score=38.12 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCccccc
Q 005116 279 ATCFAYGQTGSGKTYTMK 296 (714)
Q Consensus 279 ~tvfAYGqTGSGKTyTM~ 296 (714)
-.|+-.|++|||||+.|.
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 457789999999999885
No 425
>PRK04296 thymidine kinase; Provisional
Probab=20.21 E-value=29 Score=34.81 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCcccccC
Q 005116 280 TCFAYGQTGSGKTYTMKP 297 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM~G 297 (714)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 467799999999977644
No 426
>PRK06762 hypothetical protein; Provisional
Probab=20.18 E-value=47 Score=31.97 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCcccc
Q 005116 280 TCFAYGQTGSGKTYTM 295 (714)
Q Consensus 280 tvfAYGqTGSGKTyTM 295 (714)
.|.-.|..|||||+.-
T Consensus 4 li~i~G~~GsGKST~A 19 (166)
T PRK06762 4 LIIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998754
No 427
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.16 E-value=49 Score=39.69 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=26.4
Q ss_pred EeeeecCCCCChHHHHHHhhhhhHHHHhcCC-ceEEEeeccCCCCCcccc
Q 005116 247 VFDAVLNEEVSNDEVYRETVEPIVPIIFQRT-KATCFAYGQTGSGKTYTM 295 (714)
Q Consensus 247 ~FD~VF~~~asQeeVy~~~v~plV~~vl~G~-N~tvfAYGqTGSGKTyTM 295 (714)
+||.|++ |+.+.. -|...+-.|. .-.++-||..|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~----~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQ----ALTNALTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5677765 555443 2333333443 346788999999999987
Done!