Query 005117
Match_columns 713
No_of_seqs 188 out of 1218
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 2.4E-38 8.3E-43 298.5 11.6 122 3-124 5-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 8E-37 2.7E-41 286.3 7.7 118 4-124 8-128 (134)
3 2crr_A Stromal membrane-associ 100.0 1.9E-36 6.4E-41 286.0 8.1 121 3-126 9-132 (141)
4 3jue_A Arfgap with coiled-coil 100.0 3.9E-33 1.3E-37 294.8 9.5 125 1-125 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 4.4E-32 1.5E-36 289.9 12.1 122 3-125 14-138 (386)
6 2owa_A Arfgap-like finger doma 100.0 8.4E-31 2.9E-35 246.7 9.4 111 6-120 19-132 (138)
7 3dwd_A ADP-ribosylation factor 100.0 9.4E-30 3.2E-34 241.4 9.6 114 6-123 21-145 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 6.2E-30 2.1E-34 243.5 7.2 92 1-93 8-103 (149)
9 2b0o_E UPLC1; arfgap, structur 99.9 9E-28 3.1E-32 244.7 11.9 120 5-124 24-147 (301)
10 2p57_A GTPase-activating prote 99.9 5.8E-28 2E-32 228.7 9.1 86 7-92 21-110 (144)
11 3lvq_E ARF-GAP with SH3 domain 99.9 6.5E-28 2.2E-32 260.2 8.8 122 4-125 4-129 (497)
12 3sub_A ADP-ribosylation factor 99.9 9.7E-28 3.3E-32 230.6 7.5 87 6-92 4-94 (163)
13 1dcq_A PYK2-associated protein 99.9 2.2E-27 7.4E-32 239.0 10.0 118 8-125 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 2.1E-25 7.3E-30 231.5 9.7 88 6-93 20-110 (329)
15 1u5k_A Hypothetical protein; O 83.3 1.7 5.7E-05 43.2 6.2 48 21-81 148-195 (244)
16 2vut_I AREA, nitrogen regulato 53.3 8.2 0.00028 29.7 2.6 34 24-57 2-36 (43)
17 1gnf_A Transcription factor GA 51.7 8.6 0.0003 30.0 2.5 36 22-57 3-39 (46)
18 1tjl_A DNAK suppressor protein 49.6 15 0.00052 34.9 4.4 34 20-53 108-142 (151)
19 4gat_A Nitrogen regulatory pro 44.4 14 0.00049 30.8 2.9 37 21-57 7-44 (66)
20 1ffk_W Ribosomal protein L37AE 42.6 17 0.00059 31.0 3.2 40 10-51 13-53 (73)
21 3dfx_A Trans-acting T-cell-spe 40.8 13 0.00043 30.9 2.0 38 20-57 4-42 (63)
22 4hc9_A Trans-acting T-cell-spe 37.8 20 0.00068 32.7 3.0 33 23-55 5-38 (115)
23 1d4u_A Nucleotide excision rep 31.5 9.3 0.00032 34.9 -0.2 31 22-52 4-35 (111)
24 4glq_A Methyl-accepting chemot 31.3 19 0.00066 33.4 1.9 26 67-92 132-157 (171)
25 3g9m_A Glucocorticoid receptor 28.4 30 0.001 30.0 2.5 31 22-55 1-31 (90)
26 1r4i_A Androgen receptor; AR, 27.4 32 0.0011 30.9 2.5 33 20-55 4-36 (105)
27 2zet_C Melanophilin; complex, 27.2 25 0.00087 33.5 2.0 34 22-55 67-105 (153)
28 2han_B Ecdysone receptor; tran 25.9 39 0.0013 30.9 2.9 31 22-55 7-37 (119)
29 1hcq_A Protein (estrogen recep 24.5 44 0.0015 28.8 2.8 31 22-55 3-33 (84)
30 2kae_A GATA-type transcription 24.1 32 0.0011 29.1 1.8 34 22-56 7-43 (71)
31 1vq8_Z 50S ribosomal protein L 23.7 25 0.00084 30.5 1.1 40 11-52 14-54 (83)
32 3dzy_D Peroxisome proliferator 23.7 35 0.0012 36.8 2.5 31 22-55 49-79 (419)
33 2ebl_A COUP transcription fact 23.4 37 0.0013 29.6 2.1 32 21-55 5-36 (89)
34 2did_A Tripartite motif protei 23.2 83 0.0028 23.9 3.9 40 22-64 7-48 (53)
35 1dl6_A Transcription factor II 22.6 46 0.0016 26.7 2.4 29 24-53 12-40 (58)
36 2nll_B Protein (thyroid hormon 22.4 34 0.0012 30.6 1.7 29 24-55 2-30 (103)
37 2a66_A Orphan nuclear receptor 22.4 40 0.0014 30.7 2.2 33 20-55 6-38 (113)
38 2han_A Protein ultraspiracle; 22.0 46 0.0016 29.2 2.5 31 22-55 9-39 (93)
39 3k7a_M Transcription initiatio 22.0 27 0.00094 36.6 1.2 31 24-54 22-53 (345)
40 2kgo_A Uncharacterized protein 21.2 15 0.0005 33.6 -0.9 32 22-53 55-87 (108)
41 1cit_A NGFI-B, protein (orphan 20.5 62 0.0021 28.1 3.0 28 25-55 2-29 (89)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.4e-38 Score=298.49 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC--CceeeeecCCCCHHHHHHHHhcC
Q 005117 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (713)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSItLDkWT~eEVe~Lq~gG 80 (713)
+|+++|+++++|++|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| ||||||+||+|++++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 005117 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (713)
Q Consensus 81 N~rANeiwea~~d~~r~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (713)
|.++|++||++++....++|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 99999999999987666778877888899999999999999865
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=286.30 Aligned_cols=118 Identities=30% Similarity=0.603 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcC
Q 005117 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (713)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq~gG 80 (713)
+++.|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+|
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMG 87 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHc
Confidence 488889999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 005117 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (713)
Q Consensus 81 N~rANeiwea~~d~~r~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (713)
|.++|++||++++.. .++|.. .+.+++||++||++|+|+.+
T Consensus 88 N~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 88 NGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred hHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 999999999999764 344543 35678999999999999975
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=285.96 Aligned_cols=121 Identities=30% Similarity=0.632 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhc
Q 005117 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (713)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq~g 79 (713)
.++++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred CcHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhccccCCCC
Q 005117 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKT 126 (713)
Q Consensus 80 GN~rANeiwea~~d~~r~~~P~~sd~~~rreFIraKY~eKrF~~~k~ 126 (713)
||.++|++||++++.. .++|.. .+.+++||++||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 344543 3567899999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=3.9e-33 Score=294.83 Aligned_cols=125 Identities=20% Similarity=0.442 Sum_probs=105.8
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHH
Q 005117 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (713)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq 77 (713)
|+.+|++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 556799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcCcHHHHHHHhhcCccccCCCCCC-CchHHHHHHHHHHHhhccccCCC
Q 005117 78 NGGNQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (713)
Q Consensus 78 ~gGN~rANeiwea~~d~~r~~~P~~-sd~~~rreFIraKY~eKrF~~~k 125 (713)
.+||.++|+|||++|+....++|.. ++.+.+++||++||++|+|+...
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999998644444543 34567788999999999998763
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=4.4e-32 Score=289.93 Aligned_cols=122 Identities=24% Similarity=0.465 Sum_probs=111.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCCC--ceeeeecCCCCHHHHHHHHhcC
Q 005117 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNGG 80 (713)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGh--rVKSItLDkWT~eEVe~Lq~gG 80 (713)
+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+|.| +||||+||+|+.++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 56999999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCch-HHHHHHHHHHHhhccccCCC
Q 005117 81 NQRAREIYLKDWDFQRQRLPDNSNV-NKVRDFIKNVYVDRRYAGGK 125 (713)
Q Consensus 81 N~rANeiwea~~d~~r~~~P~~sd~-~~rreFIraKY~eKrF~~~k 125 (713)
|.++|++||++++.. .++|...+. ..+++||++||++|+|+...
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999999999999865 445655554 45667999999999999753
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=8.4e-31 Score=246.74 Aligned_cols=111 Identities=24% Similarity=0.485 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcCcH
Q 005117 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (713)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWT~eEVe~Lq~gGN~ 82 (713)
.++..+++++.|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | |||||+||+|++++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccH
Confidence 3456778888899999999999999999999999999999999999999998 5 999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhhcc
Q 005117 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120 (713)
Q Consensus 83 rANeiwea~~d~~r~~~P~~sd~~~rreFIraKY~eKr 120 (713)
++|++||++.... |.....++++.||.+||++|.
T Consensus 99 ~an~~~e~~~~~~----~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 99 RARNYFKQVLGVN----FSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHHHTCTT----CCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CCCCHHHHHhhHHHHHHHHHH
Confidence 9999999864321 333445777789999999875
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=9.4e-30 Score=241.36 Aligned_cols=114 Identities=29% Similarity=0.556 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcCcH
Q 005117 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (713)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWT~eEVe~Lq~gGN~ 82 (713)
.+++++++|++|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | |||||+||+|+++||+.|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4688999999999999999999999999999999999999999999999998 3 999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCCc--------hHHHHHHHHHHHhhccccC
Q 005117 83 RAREIYLKDWDFQRQRLPDNSN--------VNKVRDFIKNVYVDRRYAG 123 (713)
Q Consensus 83 rANeiwea~~d~~r~~~P~~sd--------~~~rreFIraKY~eKrF~~ 123 (713)
++|+|||++.... |...- ....|+.|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCC----CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999864211 11111 2335566666666666653
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=6.2e-30 Score=243.46 Aligned_cols=92 Identities=25% Similarity=0.588 Sum_probs=84.9
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC-C--ceeeeecCC-CCHHHHHHH
Q 005117 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (713)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDk-WT~eEVe~L 76 (713)
|.... .++++++|++|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | |||||+||. |+.++|+.|
T Consensus 8 m~~~~-k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDPS-KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCCC-HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred cccCC-HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH
Confidence 54443 356789999999999999999999999999999999999999999999999 4 999999995 999999999
Q ss_pred HhcCcHHHHHHHhhcCc
Q 005117 77 QNGGNQRAREIYLKDWD 93 (713)
Q Consensus 77 q~gGN~rANeiwea~~d 93 (713)
+.+||.++|+|||+++.
T Consensus 87 ~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 87 QVGGNASASSFFHQHGC 103 (149)
T ss_dssp HTTCHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 99999999999999874
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=9e-28 Score=244.67 Aligned_cols=120 Identities=26% Similarity=0.518 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcCc
Q 005117 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (713)
Q Consensus 5 ke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWT~eEVe~Lq~gGN 81 (713)
..+++++++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| | ||||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 46678899999999999999999999999999999999999999999999998 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHhhccccCC
Q 005117 82 QRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (713)
Q Consensus 82 ~rANeiwea~~d~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~ 124 (713)
.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999765444454 35677788999999999998765
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.8e-28 Score=228.69 Aligned_cols=86 Identities=22% Similarity=0.604 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCC-CCHHHHHHHHhcCcH
Q 005117 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK-FTSQEVEALQNGGNQ 82 (713)
Q Consensus 7 ~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDk-WT~eEVe~Lq~gGN~ 82 (713)
.++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||+|| ++||||+||. |++++|+.|+.+||.
T Consensus 21 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~ 100 (144)
T 2p57_A 21 KTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 100 (144)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHH
Confidence 455778999999999999999999999999999999999999999999999 3999999996 999999999999999
Q ss_pred HHHHHHhhcC
Q 005117 83 RAREIYLKDW 92 (713)
Q Consensus 83 rANeiwea~~ 92 (713)
++|++|+++.
T Consensus 101 ~an~~~e~~g 110 (144)
T 2p57_A 101 NATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 11
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=6.5e-28 Score=260.20 Aligned_cols=122 Identities=25% Similarity=0.494 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcC
Q 005117 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (713)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq~gG 80 (713)
++.+|.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCC-CchHHHHHHHHHHHhhccccCCC
Q 005117 81 NQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (713)
Q Consensus 81 N~rANeiwea~~d~~r~~~P~~-sd~~~rreFIraKY~eKrF~~~k 125 (713)
|..+|++||+.++....++|.. ++...+++||++||++++|....
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999997655555544 45667788999999999998753
No 12
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=9.7e-28 Score=230.65 Aligned_cols=87 Identities=29% Similarity=0.607 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcCc
Q 005117 6 EEERNEKIIRGLMKL-PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (713)
Q Consensus 6 e~ErnekiLr~Llk~-PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWT~eEVe~Lq~gGN 81 (713)
+....+++|++|++. |+|++|||||+++|+|||++||||||++|+||||.|| | |||||+||+|+.++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567889999999996 8999999999999999999999999999999999999 3 99999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005117 82 QRAREIYLKDW 92 (713)
Q Consensus 82 ~rANeiwea~~ 92 (713)
.++|++|+++.
T Consensus 84 ~~an~~~e~~g 94 (163)
T 3sub_A 84 KKCQTYLENYG 94 (163)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=2.2e-27 Score=238.96 Aligned_cols=118 Identities=30% Similarity=0.531 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcCcHHH
Q 005117 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRA 84 (713)
Q Consensus 8 ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq~gGN~rA 84 (713)
|+++++|+.|++.|+|+.|+|||+.+|+|+++|||+|||++|+||||+|| ++|||++||+|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999999 499999999999999999999999999
Q ss_pred HHHHhhcCccccCCCCCC-CchHHHHHHHHHHHhhccccCCC
Q 005117 85 REIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (713)
Q Consensus 85 Neiwea~~d~~r~~~P~~-sd~~~rreFIraKY~eKrF~~~k 125 (713)
|+|||+.++.....+|.. ++...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 999999987654434544 56677889999999999998764
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=231.49 Aligned_cols=88 Identities=31% Similarity=0.641 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcCcH
Q 005117 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQ 82 (713)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWT~eEVe~Lq~gGN~ 82 (713)
.+++++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 3578999999999999999999999999999999999999999999999998 3899999999999999999999999
Q ss_pred HHHHHHhhcCc
Q 005117 83 RAREIYLKDWD 93 (713)
Q Consensus 83 rANeiwea~~d 93 (713)
++|++||+.+.
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=83.28 E-value=1.7 Score=43.21 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=37.3
Q ss_pred CCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCCCceeeeecCCCCHHHHHHHHhcCc
Q 005117 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGN 81 (713)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSItLDkWT~eEVe~Lq~gGN 81 (713)
|.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-+
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 455799999998667889999999999996431 478888888865433
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=53.34 E-value=8.2 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCCcCCCCC-CCCeeEecceeeeehhhhhhhhcCC
Q 005117 24 RRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (713)
Q Consensus 24 k~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (713)
+.|++|+.. -|.|-.-..|-.||-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 579999985 5799999899999999987655533
No 17
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=51.73 E-value=8.6 Score=30.05 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=30.0
Q ss_pred CCCCCcCCCCC-CCCeeEecceeeeehhhhhhhhcCC
Q 005117 22 PNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (713)
Q Consensus 22 gNk~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (713)
..+.|++|++. -|.|-.-..|..||-.|.-.++..+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56899999985 5789988889999999987776654
No 18
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=49.58 E-value=15 Score=34.87 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=22.1
Q ss_pred CCCCCCCcCCCCCCCCe-eEecceeeeehhhhhhh
Q 005117 20 LPPNRRCINCNSLGPQY-VCTNFWTFVCMTCSGIH 53 (713)
Q Consensus 20 ~PgNk~CADCGa~~P~W-aSvnfGVFVCi~CSGIH 53 (713)
...-..|.+||.+=|.= .-.--++-.|+.|...|
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 35568999999853211 11122677899999875
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=44.44 E-value=14 Score=30.83 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCCCCCcCCCC-CCCCeeEecceeeeehhhhhhhhcCC
Q 005117 21 PPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (713)
Q Consensus 21 PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (713)
.....|++|+. .-|.|-.-..|-.||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 35689999998 46899998899999999987666544
No 20
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=42.63 E-value=17 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecceeeeehhhhh
Q 005117 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSG 51 (713)
Q Consensus 10 nekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSG 51 (713)
.++.++++ ........|.-||...-.... .||+.|-.|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45556666 456788899999986655554 59999999964
No 21
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=40.81 E-value=13 Score=30.95 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCCCCCcCCCCC-CCCeeEecceeeeehhhhhhhhcCC
Q 005117 20 LPPNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (713)
Q Consensus 20 ~PgNk~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (713)
......|++|+.. -|.|=.-..|-.||-.|.-..+..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 3567899999985 5799998899999999987666544
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=37.76 E-value=20 Score=32.72 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=27.2
Q ss_pred CCCCcCCCC-CCCCeeEecceeeeehhhhhhhhc
Q 005117 23 NRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 23 Nk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
-+.|++||+ .-|.|-.-..|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 478999998 468999988899999999866543
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=31.51 E-value=9.3 Score=34.93 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCCee-Eecceeeeehhhhhh
Q 005117 22 PNRRCINCNSLGPQYV-CTNFWTFVCMTCSGI 52 (713)
Q Consensus 22 gNk~CADCGa~~P~Wa-SvnfGVFVCi~CSGI 52 (713)
+...|.+||...-.+. .-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4568999998644443 569999999999865
No 24
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=31.30 E-value=19 Score=33.44 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHhcCcHHHHHHHhhcC
Q 005117 67 KFTSQEVEALQNGGNQRAREIYLKDW 92 (713)
Q Consensus 67 kWT~eEVe~Lq~gGN~rANeiwea~~ 92 (713)
.|+++|+++|+..++..+-.|-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999988876654
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=28.40 E-value=30 Score=30.04 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
|++.|.=||... ....|||+.|..|.+..|-
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhhh
Confidence 578899999754 2478999999999998764
No 26
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=27.38 E-value=32 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.670 Sum_probs=26.0
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
.+..+.|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999743 3589999999999998875
No 27
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.15 E-value=25 Score=33.46 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=25.2
Q ss_pred CCCCCcCCCCC-----CCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSL-----GPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~-----~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
+.+.|+-|+.+ +.--.|..=...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56899999985 45555666677888888866654
No 28
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=25.93 E-value=39 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
.+..|.=||... ....|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999754 3689999999999998775
No 29
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=24.46 E-value=44 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
+...|.=||... ....||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 467899999754 3579999999999998875
No 30
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=24.07 E-value=32 Score=29.13 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=26.0
Q ss_pred CCCCCcCCCCC-CCCeeE--ecceeeeehhhhhhhhcC
Q 005117 22 PNRRCINCNSL-GPQYVC--TNFWTFVCMTCSGIHREF 56 (713)
Q Consensus 22 gNk~CADCGa~-~P~WaS--vnfGVFVCi~CSGIHR~L 56 (713)
....|++|+.. -|.|-. -.-| .||-.|.-.+|..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 45799999984 688988 6777 8999998665543
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.68 E-value=25 Score=30.52 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHH-hcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhh
Q 005117 11 EKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGI 52 (713)
Q Consensus 11 ekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGI 52 (713)
++.++++ ......-.|..||... --...-|++.|..|-..
T Consensus 14 Rk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 14 RRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCCE
T ss_pred HHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCCE
Confidence 4445555 3445678999999732 22345789999999743
No 32
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=23.66 E-value=35 Score=36.75 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=25.0
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
.+..|.=||....- ..|||..|..|.+..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 46789999986543 58999999999998765
No 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=23.35 E-value=37 Score=29.58 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
+.+..|.=||.... ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997543 468999999999998765
No 34
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=23.18 E-value=83 Score=23.87 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=29.8
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhh--hhhhcCCCceeeee
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCS--GIHREFTHRVKSVS 64 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CS--GIHR~LGhrVKSIt 64 (713)
.+..|..-+ ..-.+-|..=+..||..|. +-|| +|+|..|.
T Consensus 7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 48 (53)
T 2did_A 7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR--AHTVVPLS 48 (53)
T ss_dssp SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT--TSCEEECC
T ss_pred CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC--CCcEeeHH
Confidence 456676665 5577888888999999997 5676 57777765
No 35
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=22.62 E-value=46 Score=26.74 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.7
Q ss_pred CCCcCCCCCCCCeeEecceeeeehhhhhhh
Q 005117 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIH 53 (713)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIH 53 (713)
.+|-+|+.....+ ...-|.+||..|.-|-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999865222 3456899999996553
No 36
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=22.42 E-value=34 Score=30.55 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=23.6
Q ss_pred CCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
..|.=||... ....|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 5799999754 3478999999999998765
No 37
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=22.38 E-value=40 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
...+..|.=||... ....|||+.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999753 3689999999999998765
No 38
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=22.04 E-value=46 Score=29.18 Aligned_cols=31 Identities=16% Similarity=0.552 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
....|.=||... ....||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 457899999754 3579999999999998765
No 39
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.00 E-value=27 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCcCCCCCCCCe-eEecceeeeehhhhhhhh
Q 005117 24 RRCINCNSLGPQY-VCTNFWTFVCMTCSGIHR 54 (713)
Q Consensus 24 k~CADCGa~~P~W-aSvnfGVFVCi~CSGIHR 54 (713)
..|-+||...|.- ....-|-.||.+|.-|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4799999975432 234569999999987653
No 40
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=21.18 E-value=15 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=20.7
Q ss_pred CCCCCcCCCCCCCCe-eEecceeeeehhhhhhh
Q 005117 22 PNRRCINCNSLGPQY-VCTNFWTFVCMTCSGIH 53 (713)
Q Consensus 22 gNk~CADCGa~~P~W-aSvnfGVFVCi~CSGIH 53 (713)
.-..|.+||.+=|.= .-.--++-.|+.|...+
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 357999999853211 11222577899999765
No 41
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=20.53 E-value=62 Score=28.14 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=23.0
Q ss_pred CCcCCCCCCCCeeEecceeeeehhhhhhhhc
Q 005117 25 RCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (713)
Q Consensus 25 ~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (713)
.|.=||.... ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997542 579999999999998765
Done!