Query 005118
Match_columns 713
No_of_seqs 399 out of 1514
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 4.2E-43 9E-48 403.2 16.0 256 366-621 218-531 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.2E-27 2.6E-32 222.7 13.8 108 369-478 4-112 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.7E-27 3.7E-32 217.9 12.8 104 369-472 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.5E-27 5.4E-32 216.6 12.1 103 370-472 4-107 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 5.7E-27 1.2E-31 210.8 10.9 95 372-468 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.5E-26 3.3E-31 207.4 10.9 99 371-469 1-99 (99)
7 cd05504 Bromo_Acf1_like Bromod 99.9 2.9E-26 6.3E-31 212.1 12.7 104 367-472 9-112 (115)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2E-26 4.3E-31 206.8 10.8 96 372-469 2-97 (97)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 3.3E-26 7.1E-31 206.5 10.7 98 372-469 2-102 (102)
10 cd05507 Bromo_brd8_like Bromod 99.9 7.5E-26 1.6E-30 205.7 11.6 100 370-471 3-102 (104)
11 cd05500 Bromo_BDF1_2_I Bromodo 99.9 8.8E-26 1.9E-30 204.6 12.0 101 368-468 2-102 (103)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 8.8E-26 1.9E-30 204.0 11.0 98 372-469 2-102 (102)
13 cd05510 Bromo_SPT7_like Bromod 99.9 1.2E-25 2.7E-30 207.1 11.4 104 368-473 5-110 (112)
14 cd05502 Bromo_tif1_like Bromod 99.9 2.5E-25 5.4E-30 203.5 12.8 101 369-472 3-106 (109)
15 cd05501 Bromo_SP100C_like Brom 99.9 2.4E-25 5.3E-30 202.0 12.4 98 370-472 2-99 (102)
16 cd05509 Bromo_gcn5_like Bromod 99.9 2.7E-25 5.8E-30 200.2 11.5 99 371-471 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 2.8E-25 6E-30 200.7 11.3 97 369-468 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 7.4E-25 1.6E-29 200.2 10.3 100 371-472 2-107 (107)
19 cd05528 Bromo_AAA Bromodomain; 99.9 2.7E-24 5.8E-29 198.2 12.0 101 370-472 3-107 (112)
20 cd05513 Bromo_brd7_like Bromod 99.9 2.6E-24 5.7E-29 194.0 11.0 92 371-464 2-93 (98)
21 cd05511 Bromo_TFIID Bromodomai 99.9 4.6E-24 1E-28 196.5 12.4 103 374-478 4-106 (112)
22 cd05512 Bromo_brd1_like Bromod 99.9 4.5E-24 9.7E-29 192.4 10.9 92 371-464 2-93 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 1.9E-23 4.2E-28 189.3 9.9 96 372-469 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 2.4E-23 5.2E-28 189.6 10.0 97 372-470 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 4.4E-23 9.6E-28 190.4 10.8 101 371-473 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 1.3E-22 2.9E-27 190.9 12.3 102 368-470 22-126 (128)
27 cd05520 Bromo_polybromo_III Br 99.9 6.8E-23 1.5E-27 186.2 10.0 92 375-468 5-102 (103)
28 smart00297 BROMO bromo domain. 99.9 1.4E-22 3.1E-27 182.1 11.6 101 369-471 6-106 (107)
29 cd05517 Bromo_polybromo_II Bro 99.9 7E-23 1.5E-27 186.2 9.2 94 372-467 2-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 1.6E-22 3.4E-27 184.8 10.7 96 371-468 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 1.8E-22 3.8E-27 183.6 9.7 94 373-468 3-102 (103)
32 cd04369 Bromodomain Bromodomai 99.9 1.5E-21 3.3E-26 169.8 9.9 96 372-469 2-99 (99)
33 PF00439 Bromodomain: Bromodom 99.9 1.9E-21 4.2E-26 167.6 9.3 84 375-460 1-84 (84)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 5.6E-21 1.2E-25 174.7 10.5 96 371-470 2-103 (106)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.8 8.3E-21 1.8E-25 172.8 10.8 95 372-468 6-103 (104)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 3.7E-20 8.1E-25 170.1 11.9 98 375-472 5-106 (109)
37 KOG1245 Chromatin remodeling c 99.7 9.7E-18 2.1E-22 205.5 8.1 95 375-472 1306-1400(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 7E-17 1.5E-21 148.6 10.4 99 370-472 3-107 (110)
39 COG5076 Transcription factor i 99.7 6.7E-17 1.5E-21 176.2 9.5 105 370-476 145-252 (371)
40 KOG1472 Histone acetyltransfer 99.4 6.8E-14 1.5E-18 161.2 6.3 101 370-472 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.7E-13 3.6E-18 127.2 3.8 81 370-450 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 9E-12 1.9E-16 149.1 4.7 109 368-478 563-671 (1051)
43 cd05491 Bromo_TBP7_like Bromod 98.9 9.2E-10 2E-14 102.6 4.4 41 411-451 63-103 (119)
44 KOG0008 Transcription initiati 98.9 2.3E-09 4.9E-14 128.7 6.9 95 374-470 1386-1480(1563)
45 KOG1474 Transcription initiati 98.8 1.4E-09 3.1E-14 126.8 0.2 93 380-472 2-94 (640)
46 KOG0386 Chromatin remodeling c 98.7 1.2E-08 2.7E-13 120.3 7.2 100 373-474 1027-1132(1157)
47 KOG1827 Chromatin remodeling c 98.7 1.6E-08 3.6E-13 115.9 7.7 100 369-470 51-156 (629)
48 KOG0008 Transcription initiati 98.7 4.8E-08 1E-12 117.7 8.5 104 373-478 1264-1367(1563)
49 KOG1472 Histone acetyltransfer 98.6 4.4E-08 9.6E-13 113.9 5.9 68 384-453 300-367 (720)
50 KOG1828 IRF-2-binding protein 98.2 3.3E-07 7.2E-12 99.5 -0.1 95 372-468 21-115 (418)
51 KOG1828 IRF-2-binding protein 97.8 1.3E-05 2.9E-10 87.3 3.9 86 378-467 216-301 (418)
52 COG5076 Transcription factor i 97.0 0.00021 4.6E-09 78.7 0.7 93 377-471 270-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 94.9 0.046 1E-06 52.6 5.3 63 412-474 59-121 (131)
54 KOG0644 Uncharacterized conser 87.7 0.37 8E-06 57.9 2.8 60 409-468 1050-1109(1113)
55 PF05110 AF-4: AF-4 proto-onco 85.9 0.71 1.5E-05 58.3 4.1 18 685-702 440-457 (1191)
56 KOG0732 AAA+-type ATPase conta 84.6 0.54 1.2E-05 58.4 2.2 64 388-451 533-601 (1080)
57 PHA03308 transcriptional regul 78.8 1.3 2.8E-05 52.6 2.4 14 139-152 202-215 (1463)
58 KOG2140 Uncharacterized conser 71.0 2.6 5.7E-05 48.9 2.3 19 597-615 535-553 (739)
59 PF10500 SR-25: Nuclear RNA-sp 61.6 5.5 0.00012 41.7 2.3 13 684-696 60-72 (225)
60 KOG2140 Uncharacterized conser 60.4 6.5 0.00014 45.9 2.7 16 567-582 480-495 (739)
61 PF05110 AF-4: AF-4 proto-onco 59.1 7.3 0.00016 49.6 3.2 12 697-708 446-457 (1191)
62 KOG2130 Phosphatidylserine-spe 55.9 8.8 0.00019 42.3 2.7 19 426-444 157-175 (407)
63 KOG1827 Chromatin remodeling c 53.3 1.9 4.1E-05 51.1 -3.0 76 388-465 213-288 (629)
64 KOG1632 Uncharacterized PHD Zn 49.5 2.4 5.3E-05 47.0 -2.7 81 377-459 207-291 (345)
65 KOG2548 SWAP mRNA splicing reg 48.7 46 0.001 39.0 7.0 27 589-615 196-222 (653)
66 KOG0644 Uncharacterized conser 44.1 9.7 0.00021 46.5 0.9 69 393-464 88-186 (1113)
67 PF14372 DUF4413: Domain of un 41.4 1E+02 0.0022 28.2 6.9 52 424-475 3-54 (101)
68 KOG3116 Predicted C3H1-type Zn 39.0 25 0.00055 34.9 2.7 12 685-696 142-153 (177)
69 PF07218 RAP1: Rhoptry-associa 37.9 51 0.0011 39.0 5.3 27 594-620 39-65 (782)
70 PF11596 DUF3246: Protein of u 36.5 20 0.00044 37.7 1.7 13 683-695 228-240 (241)
71 PF07462 MSP1_C: Merozoite sur 36.0 34 0.00074 40.2 3.5 20 408-427 437-459 (574)
72 KOG2130 Phosphatidylserine-spe 33.4 29 0.00062 38.5 2.3 17 219-235 13-29 (407)
73 TIGR02606 antidote_CC2985 puta 30.8 66 0.0014 27.7 3.7 27 416-442 12-38 (69)
74 PRK00083 frr ribosome recyclin 26.9 1.4E+02 0.0031 30.4 6.0 46 202-247 89-134 (185)
75 TIGR00496 frr ribosome recycli 26.0 1.6E+02 0.0034 30.0 6.0 46 202-247 80-125 (176)
76 cd00520 RRF Ribosome recycling 24.9 1.7E+02 0.0037 29.6 6.0 46 202-247 85-130 (179)
77 PF11116 DUF2624: Protein of u 24.6 60 0.0013 29.5 2.4 39 550-588 13-52 (85)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=4.2e-43 Score=403.24 Aligned_cols=256 Identities=45% Similarity=0.684 Sum_probs=183.1
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 005118 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 366 ~~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~ 445 (713)
..+..+|++|..||.+||+|+|+|||+.|||++.||+||||+||||||||+|||+||.++.|.++.+|++||||||+|||
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-C-----CCC----CCC--------CCCCCC-CCChh
Q 005118 446 TYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYEM-G-----FHT----PTS--------RKAPPL-PPPLD 506 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~e~~~~~d~~~-~-----~~~----p~s--------rka~~~-~~~~~ 506 (713)
+||++|++||.||..|+++|+.+|+.++..+............ . ... +.. ...+.. ..+.+
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMSEE 377 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccccHH
Confidence 9999999999999999999999999987766543221110000 0 000 000 000000 00001
Q ss_pred HHHh-hhhcccccCCCCCCCC-----CCCCCCC---------CCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 005118 507 MRRI-LDRSESITHPMDSRLK-----PISTTPS---------SRT--------PAPKKPKAKDPHKRDMTYDEKQKLSTN 563 (713)
Q Consensus 507 ~~r~-~~~s~s~~q~~~~~~k-----p~s~~p~---------~r~--------~~~KK~k~~d~~krpMT~eEK~kLs~d 563 (713)
++.. ..........+...+. +....+. .+. ...+........++.||..|+..|...
T Consensus 378 e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~ 457 (640)
T KOG1474|consen 378 ERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKEL 457 (640)
T ss_pred hhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccchhh
Confidence 1000 0000000000000000 0000000 000 011222334557889999999999999
Q ss_pred hcC-CChhhHHHHHHHH--HhhcCCCCCCCCeEEEECCCCC-------------HHHHHHHHHHHHHHHhhhch
Q 005118 564 LQS-LPSEKLDNIVQII--KKRNSSLFQHDDEIEVDIDSVD-------------AETLWELDRFVTNYKKSLSK 621 (713)
Q Consensus 564 In~-Lp~EkL~~VV~II--q~reP~l~~~~dEIEIDIdtL~-------------~~TLreLerYV~~~kK~~~K 621 (713)
++. |++.+|..+++|+ ..+.+.+.+.+++|++|++.++ ..|+|++.+++..+...+.+
T Consensus 458 ~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~ 531 (640)
T KOG1474|consen 458 LQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSK 531 (640)
T ss_pred ccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHHHH
Confidence 999 5999999999999 5577888889999999999999 99999999999998655544
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.2e-27 Score=222.65 Aligned_cols=108 Identities=37% Similarity=0.572 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
.+|.+.|..||..|++|+.+|||+.|||+.. +||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 449 PK-GQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 449 ~~-gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
++ ++.||.+|..|+.+|+++|++|...+..
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 9999999999999999999999888754
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-27 Score=217.91 Aligned_cols=104 Identities=36% Similarity=0.612 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 369 SKIFKSCSALLEKLMKH-KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~-k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
.++.+.|..||++|+++ +.+|+|..|||++.+++||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999 99999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
|+++|.+|.+|..|+++|++.+..+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.5e-27 Score=216.57 Aligned_cols=103 Identities=42% Similarity=0.699 Sum_probs=96.9
Q ss_pred HHHHHH-HHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 370 KIFKSC-SALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 370 el~k~C-~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
.+++.| ..||..|++|+.+|||..|||+...++||||+||++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 455555 6889999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+++|.|+.+|..|+++|+++++.+
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988753
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=5.7e-27 Score=210.78 Aligned_cols=95 Identities=31% Similarity=0.556 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 005118 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~g 451 (713)
+++|..||++|++|+.+|+|..||++.. +||||+||++||||+||++||+.+.|.++.+|.+||+|||.||+.||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005118 452 QDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 452 S~V~~~A~~Le~~FE~~ 468 (713)
+.|+.+|..|+++|..+
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=207.37 Aligned_cols=99 Identities=70% Similarity=1.189 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
+++.|..||+.|++++.+|+|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999987779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 451 gS~V~~~A~~Le~~FE~~~ 469 (713)
+|.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.9e-26 Score=212.06 Aligned_cols=104 Identities=36% Similarity=0.640 Sum_probs=100.4
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
.+...+..|..||..|++++.+|+|..|||... +||||++|++||||+||++||+.+.|.++.+|..||+|||.||+.
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
||+++|.++.+|..|+++|+++++++
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2e-26 Score=206.80 Aligned_cols=96 Identities=36% Similarity=0.738 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 005118 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~g 451 (713)
+.+|..||..|++|+.+++|..||++.. +|+||++|++||||+||++||+++.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005118 452 QDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 452 S~V~~~A~~Le~~FE~~~ 469 (713)
+.++.+|..|+++|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.3e-26 Score=206.45 Aligned_cols=98 Identities=49% Similarity=0.925 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 372 FKSCSALLEKLMKH---KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 372 ~k~C~~IL~kL~k~---k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
+++|..||+.|+++ +.+|+|+.||++...++||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67899999999999 779999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~~ 469 (713)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.5e-26 Score=205.66 Aligned_cols=100 Identities=29% Similarity=0.423 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
.|.+.|..||+.|+.|+.+|+|.+||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999865 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 005118 450 KGQDVHIMAEQLLKIFEDKWVV 471 (713)
Q Consensus 450 ~gS~V~~~A~~Le~~FE~~~~~ 471 (713)
+++.|+.+|..|++.|..++..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 11
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.8e-26 Score=204.57 Aligned_cols=101 Identities=34% Similarity=0.503 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+.++|..||+.|++++.+|+|..|||+...++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~ 468 (713)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.8e-26 Score=203.96 Aligned_cols=98 Identities=49% Similarity=0.916 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCC---CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 372 FKSCSALLEKLMKHK---HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k---~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
++.|.+||..|++++ .+|+|+.|||+...++||||++|++||||++|++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999964 58999999999966699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~~ 469 (713)
+++|.++.+|..|++.|+.+|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999976
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=207.11 Aligned_cols=104 Identities=30% Similarity=0.473 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHHHHcC-CCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 368 GSKIFKSCSALLEKLMKH-KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~-k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
..++...|..||..|++| +++|+|..||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999 89999999999986 999999999999999999999999999999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQ-DVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 447 YN~~gS-~V~~~A~~Le~~FE~~~~~I~ 473 (713)
||++++ .++.+|..|+++|+..+..|+
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999866 678999999999999998775
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.5e-25 Score=203.52 Aligned_cols=101 Identities=33% Similarity=0.601 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhh
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK---NWYKSPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~---~~Y~s~~EF~~DVrLIF~NA~ 445 (713)
..++++|..||.+|++|+.+|+|..||++ . +|+||++|++||||+||++||+. +.|.++.+|..||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998 3 89999999999999999999998 699999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 446 TYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
.||+++|.++.+|..|++.|+++|..+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 15
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.4e-25 Score=201.97 Aligned_cols=98 Identities=30% Similarity=0.410 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
+.++.|+.||..|++++.+++|..+ +. ++||||+|||+||||+||++||.+|+|.++.+|.+||+|||.||++||+
T Consensus 2 ~~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~ 77 (102)
T cd05501 2 EELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYK 77 (102)
T ss_pred HHHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3567799999999999999999663 33 4999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 005118 450 KGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 450 ~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
++ .++.+|..|++.|+++|+.+
T Consensus 78 ~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 78 DD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999875
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=200.21 Aligned_cols=99 Identities=32% Similarity=0.613 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
++.+|..||+.|++|+.+|+|..||++.. +|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKIFEDKWVV 471 (713)
Q Consensus 451 gS~V~~~A~~Le~~FE~~~~~ 471 (713)
++.++.+|..|++.|++++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.8e-25 Score=200.66 Aligned_cols=97 Identities=29% Similarity=0.462 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
.++...+..+|.+|+ |+.+|+|.+||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456777888999999 999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~ 468 (713)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=7.4e-25 Score=200.19 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
+.+.|..||+.|+++++ +|+|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67889999999999987 899999999876 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+.||++||.||.+|..|+++|++.+.++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988753
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=2.7e-24 Score=198.22 Aligned_cols=101 Identities=29% Similarity=0.453 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
++...|..||++|+.|+.+|+|.+|||+.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 567789999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 005118 450 K----GQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 450 ~----gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+ |+.++.+|..|++.|..++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999988764
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=193.97 Aligned_cols=92 Identities=33% Similarity=0.465 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
+.+.|..||+.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKI 464 (713)
Q Consensus 451 gS~V~~~A~~Le~~ 464 (713)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999754
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.6e-24 Score=196.50 Aligned_cols=103 Identities=29% Similarity=0.555 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH
Q 005118 374 SCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQD 453 (713)
Q Consensus 374 ~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~ 453 (713)
.+..||.+|++|+.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46889999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 454 VHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 454 V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
++.+|..|++.|+..+..++.++..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999887643
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.5e-24 Score=192.36 Aligned_cols=92 Identities=26% Similarity=0.478 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
+...|+.+|++|+.|+.+|+|..|||... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34578999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKI 464 (713)
Q Consensus 451 gS~V~~~A~~Le~~ 464 (713)
++.+|++|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.9e-23 Score=189.31 Aligned_cols=96 Identities=31% Similarity=0.467 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 005118 372 FKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~ 445 (713)
.+.|..|++.|+.++. +|+|.+||+... +||||++|++||||++|++||+.|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999996653 899999999877 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 005118 446 TYNPKGQDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~~~ 469 (713)
.||++++.++.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.4e-23 Score=189.61 Aligned_cols=97 Identities=21% Similarity=0.359 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 005118 372 FKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~ 445 (713)
+++|..||+.|+.+++ +++|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888654 799999998887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 005118 446 TYNPKGQDVHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~~~~ 470 (713)
.||+++|.+|.+|..|+++|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4.4e-23 Score=190.36 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
..+.|..||+.|++++. +.+|..+++... +||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999998765 467999888665 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
+.||+++|.+|.+|..|+++|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.3e-22 Score=190.94 Aligned_cols=102 Identities=27% Similarity=0.418 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHH---cCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 368 GSKIFKSCSALLEKLM---KHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~---k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
...+...|..+|++|+ .++.+++|..||+... .+|+||++|++||||+||++||+++.|.++.+|..||+|||.||
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999 8999999999999983 39999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~ 470 (713)
+.||+++|.++.+|..|+++|...+.
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.8e-23 Score=186.22 Aligned_cols=92 Identities=25% Similarity=0.409 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCC------CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 375 CSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 375 C~~IL~kL~k~k------~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
+..|++.|+.++ .+++|.+||+... +||||++|++||||+||++||+++.|.++.+|+.||+|||.||+.||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 455666666655 3899999999877 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~ 468 (713)
+++|.+|.+|..|+++|+++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 28
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1.4e-22 Score=182.15 Aligned_cols=101 Identities=43% Similarity=0.641 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
..+...|..|+..+.+|+.+++|..||+... +|+||++|++||||++|++||+++.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4677889999999999999999999999887 89999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDKWVV 471 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~~~~ 471 (713)
++++.++.+|..|+..|+..|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7e-23 Score=186.18 Aligned_cols=94 Identities=30% Similarity=0.477 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 005118 372 FKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~ 445 (713)
.+.|..||+.|+.+.+ +++|..+++... +||||++|++||||+||++||+.+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999998765 699999999887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 005118 446 TYNPKGQDVHIMAEQLLKIFED 467 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~ 467 (713)
.||++||.++.+|..|+++|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=184.84 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
+.+.|..||+.|..++. +|+|.++++... +||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45678888888888665 699999998877 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~ 468 (713)
+.||++||.++.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999873
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.8e-22 Score=183.61 Aligned_cols=94 Identities=30% Similarity=0.470 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 373 KSCSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 373 k~C~~IL~kL~k~k------~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
++|..|++.|...+ .+.+|..+|+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777776653 4789999999887 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~ 468 (713)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=1.5e-21 Score=169.78 Aligned_cols=96 Identities=43% Similarity=0.604 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 372 FKSCSALLEKLMKH--KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 372 ~k~C~~IL~kL~k~--k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
...|..|+..|+.+ +.+++|..||++.. +|+||++|++||||.+|++||..+.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35799999999999 99999999999966 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 005118 450 KGQDVHIMAEQLLKIFEDKW 469 (713)
Q Consensus 450 ~gS~V~~~A~~Le~~FE~~~ 469 (713)
.++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.85 E-value=1.9e-21 Score=167.63 Aligned_cols=84 Identities=46% Similarity=0.779 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH
Q 005118 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDV 454 (713)
Q Consensus 375 C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V 454 (713)
|..||+.|++|+.+++|..||+... +|+|+++|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8999999999999999999998777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 005118 455 HIMAEQ 460 (713)
Q Consensus 455 ~~~A~~ 460 (713)
|.+|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.6e-21 Score=174.71 Aligned_cols=96 Identities=32% Similarity=0.438 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
+.++|..|++.|+..++ +.+|..+++... +||||++|++||||+||++||.+ |.++.+|..||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 45778999999988765 468998887766 99999999999999999999998 999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~ 470 (713)
+.||++++.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998653
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=8.3e-21 Score=172.78 Aligned_cols=95 Identities=25% Similarity=0.267 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHc---CCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 372 FKSCSALLEKLMK---HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 372 ~k~C~~IL~kL~k---~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
++.+...|..+.. ++.+++|..+|+... +||||++|++||||++|++||..+.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3344444444443 345899999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~ 468 (713)
++++.+|.+|..|++.|+..
T Consensus 84 ~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999873
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=3.7e-20 Score=170.11 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred HHHHHHHHHc-CCCCCCCCCcCC---ccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 375 CSALLEKLMK-HKHGWVFNAPVD---VKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 375 C~~IL~kL~k-~k~a~pF~~PVD---~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
+..++.++.+ .+..+||..||. +..+++|+||++|++||||+||++||++|.|+++.||.+||+|||+||+.||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3456677776 566799999997 344459999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 451 gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+|.++.+|+.|.......+.+|
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777665
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.71 E-value=9.7e-18 Score=205.53 Aligned_cols=95 Identities=39% Similarity=0.785 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH
Q 005118 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDV 454 (713)
Q Consensus 375 C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V 454 (713)
|..||..|+.|+.+|||++||++.. +||||+|||+||||.||+.||..|.|.++.+|..||.|||.||..||.. +.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005118 455 HIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 455 ~~~A~~Le~~FE~~~~~I 472 (713)
++.+..|..+|+.+|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988653
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.70 E-value=7e-17 Score=148.63 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 005118 370 KIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~N 443 (713)
.+.+.+..|+..++.|.+ +.+|.+.+. . .++||.+|+.||||.+|++||..|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 356778899999999985 678888666 2 578899999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 444 A~~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
|+.||.+||.+|.+|..|+.+|.....++
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.68 E-value=6.7e-17 Score=176.18 Aligned_cols=105 Identities=30% Similarity=0.394 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcC---CCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 370 KIFKSCSALLEKLMKH---KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 370 el~k~C~~IL~kL~k~---k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
+....+...+.++... ...++|..+|+... +|+||.||+.||||++|++||..+.|.++++|..||.|||.||++
T Consensus 145 ~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 145 ADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHhhcccccccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 3334444444444433 34889999998887 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDKWVVIESEY 476 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~~~~I~~e~ 476 (713)
||.++|.||.+|..|++.|...+..++...
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999876554
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.44 E-value=6.8e-14 Score=161.22 Aligned_cols=101 Identities=35% Similarity=0.575 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
.+......||.+|..|.++|||.+||+..+ +||||++|++||||.||+.+|..+.|.....|++|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 455677899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 005118 450 KGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 450 ~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
.++..|++|..|..+|...+...
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998877654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.39 E-value=1.7e-13 Score=127.18 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcC-------CCCCHHHHHHHHHHHHH
Q 005118 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN-------WYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~-------~Y~s~~EF~~DVrLIF~ 442 (713)
+.+..|..+|++++.|+.+|||..|||+...++||||++||+||||+||+++|.++ .|.--..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 46778889999999999999999999997778999999999999999999999987 45555566777777777
Q ss_pred hhhhhCCC
Q 005118 443 NAMTYNPK 450 (713)
Q Consensus 443 NA~~YN~~ 450 (713)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777654
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.20 E-value=9e-12 Score=149.06 Aligned_cols=109 Identities=29% Similarity=0.385 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
+....+.|+.+|++|...+...+|..|||..+ +|||++||++||||.||+.+++.+.|.++++|.+|+.||..||+.|
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 55677888999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
|..+..+|..|..|++.....+.....+...
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~arke~e~ 671 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNARKEPES 671 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhcccchhh
Confidence 9999999999999999988888776655543
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.91 E-value=9.2e-10 Score=102.60 Aligned_cols=41 Identities=32% Similarity=0.582 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 005118 411 HPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (713)
Q Consensus 411 ~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~g 451 (713)
.||||+||++||.+|.|.++.+|.+||+|||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999874
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.87 E-value=2.3e-09 Score=128.73 Aligned_cols=95 Identities=25% Similarity=0.470 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH
Q 005118 374 SCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQD 453 (713)
Q Consensus 374 ~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~ 453 (713)
.+-.|+.+++..+.+|+|.+||+.+. +|+||.+|++||||.+|.+++..+.|.+..||.+||++|+.||..||+..+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccc
Confidence 34567777778888999999999998 9999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005118 454 VHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 454 V~~~A~~Le~~FE~~~~ 470 (713)
...-|+++-.+....+.
T Consensus 1464 y~~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLL 1480 (1563)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 77777766665555444
No 45
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.76 E-value=1.4e-09 Score=126.77 Aligned_cols=93 Identities=38% Similarity=0.672 Sum_probs=86.5
Q ss_pred HHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHH
Q 005118 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAE 459 (713)
Q Consensus 380 ~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~ 459 (713)
+.+.+|.++|+|..||+.+.+++|+||.+|++|||++||+.+|++..|....+..+|+.-+|.||+.||.++-+|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005118 460 QLLKIFEDKWVVI 472 (713)
Q Consensus 460 ~Le~~FE~~~~~I 472 (713)
.++..|.+....+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999997655444
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.75 E-value=1.2e-08 Score=120.33 Aligned_cols=100 Identities=31% Similarity=0.428 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 373 KSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 373 k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
+.|..|+....++.+ +..|........ +||||.||+.||++..|+++|.++.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 678888888887665 578998877777 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~~~~I~~ 474 (713)
||..||.||..|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998877754
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=1.6e-08 Score=115.86 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005118 369 SKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~ 442 (713)
.....++..||..|..+.+ ...|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..|++|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3456677788888887765 567888888877 99999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 005118 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 443 NA~~YN~~gS~V~~~A~~Le~~FE~~~~ 470 (713)
||+.||.+++.+|+++..|+..|.....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999988553
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.65 E-value=4.8e-08 Score=117.70 Aligned_cols=104 Identities=25% Similarity=0.416 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 005118 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (713)
Q Consensus 373 k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS 452 (713)
-.+..|+.++...++..+|..||+... ++|||.||+.||||.++|+.+..+.|.+-++|..|+.|||+|..+||++-+
T Consensus 1264 s~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1264 SILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 346789999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 453 DVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 453 ~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
.+...+..+....-..|..-++.+.+
T Consensus 1342 ~~t~~~q~mls~~~~~~~ekedk~~~ 1367 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLKEKEDKLWR 1367 (1563)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 99999999988888888877666544
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.59 E-value=4.4e-08 Score=113.91 Aligned_cols=68 Identities=31% Similarity=0.521 Sum_probs=64.4
Q ss_pred cCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH
Q 005118 384 KHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQD 453 (713)
Q Consensus 384 k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~ 453 (713)
.++++|+|.++|+... .|+||.||+.||||+++.+|+..+.|.+.++|+.|+.+||.||..||...+.
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccch
Confidence 4899999999999988 9999999999999999999999999999999999999999999999986543
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.18 E-value=3.3e-07 Score=99.46 Aligned_cols=95 Identities=23% Similarity=0.235 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 005118 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~g 451 (713)
......++.+|.+...-..|.-||.... .|+|.+||+.|||+.|++.|++.++|.++.+|..|.+||..||..||...
T Consensus 21 ~~~~ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 21 SGDAEHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred hhhHHHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 3345667777777777777888888877 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005118 452 QDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 452 S~V~~~A~~Le~~FE~~ 468 (713)
+.++..|..|..+-...
T Consensus 99 Tv~~~aaKrL~~v~~~~ 115 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGM 115 (418)
T ss_pred ccccccccccchhhcch
Confidence 99999999987664443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.82 E-value=1.3e-05 Score=87.31 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=76.4
Q ss_pred HHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 005118 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIM 457 (713)
Q Consensus 378 IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~ 457 (713)
..++|........|..++-... +|.|..+|++|+|++|++.|..++.|.+ .+|..|+.||+.||++||.+...+|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 4456666666788888888777 8999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005118 458 AEQLLKIFED 467 (713)
Q Consensus 458 A~~Le~~FE~ 467 (713)
|..+.- |..
T Consensus 293 ank~lh-f~~ 301 (418)
T KOG1828|consen 293 ANKQLH-FGV 301 (418)
T ss_pred HHhhhh-hcC
Confidence 998875 443
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.99 E-value=0.00021 Score=78.71 Aligned_cols=93 Identities=31% Similarity=0.513 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 005118 377 ALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHI 456 (713)
Q Consensus 377 ~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~ 456 (713)
.++.....+-.+|+|..++.... .|+|+++|..+|++.|.+.++..+.|.....|..|..++|+||..||.....++.
T Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 270 VLITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred hcccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhh
Confidence 34444466777999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005118 457 MAEQLLKIFEDKWVV 471 (713)
Q Consensus 457 ~A~~Le~~FE~~~~~ 471 (713)
.+..+..+|...+..
T Consensus 348 ~~~~~~~~~~~~~~~ 362 (371)
T COG5076 348 NANVLEDFVIKKTRL 362 (371)
T ss_pred hccchhhhHhhhhhh
Confidence 999998888775543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.87 E-value=0.046 Score=52.60 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=48.6
Q ss_pred CCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005118 412 PMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (713)
Q Consensus 412 PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~ 474 (713)
|.||.-|++||+.|.|+++.+|.+||-+|+.-++.=.+-...+-+.-..+..+|.+.+..+-.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999988866554444444445555666665555433
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.65 E-value=0.37 Score=57.92 Aligned_cols=60 Identities=27% Similarity=0.496 Sum_probs=51.9
Q ss_pred ccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q 005118 409 IRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468 (713)
Q Consensus 409 IK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~FE~~ 468 (713)
---|..|..|+.+|++.+|++.+.|..||-.|.+||.+|.+.+.-|...+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 345889999999999999999999999999999999999998887777777777666543
No 55
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=85.88 E-value=0.71 Score=58.29 Aligned_cols=18 Identities=61% Similarity=0.508 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 005118 685 SSSSSDSGSSSSDSETSS 702 (713)
Q Consensus 685 SSSSSdSgSsSsSdS~Ss 702 (713)
|+|+|+|.|||+|||+|.
T Consensus 440 S~SsS~SESsS~SDSESE 457 (1191)
T PF05110_consen 440 SSSSSESESSSSSDSESE 457 (1191)
T ss_pred CCCCCCCCccCccccccc
Confidence 335555555555554443
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=0.54 Score=58.38 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCCCCCcCCcccc---CCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHH--HHHHHHHhhhhhCCCC
Q 005118 388 GWVFNAPVDVKNL---GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAE--DVRLTFHNAMTYNPKG 451 (713)
Q Consensus 388 a~pF~~PVD~~~l---~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~--DVrLIF~NA~~YN~~g 451 (713)
...|..|++.... .+++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 6778888875432 25699999999999999999999999999999999 9999999999999865
No 57
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=78.77 E-value=1.3 Score=52.63 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCCC
Q 005118 139 DNEKSSIPEQPTQT 152 (713)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (713)
+--++.++++.+|.
T Consensus 202 dlwsnrrpvpspqr 215 (1463)
T PHA03308 202 DLWSNRRPVPSPQR 215 (1463)
T ss_pred hhhhcCCCCCCccc
Confidence 34455556655553
No 58
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=71.04 E-value=2.6 Score=48.93 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 005118 597 IDSVDAETLWELDRFVTNY 615 (713)
Q Consensus 597 IdtL~~~TLreLerYV~~~ 615 (713)
|+-+....||.|-+|...+
T Consensus 535 Ihr~EtnkLRnlakffahL 553 (739)
T KOG2140|consen 535 IHRYETNKLRNLAKFFAHL 553 (739)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5667777888888887764
No 59
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=61.58 E-value=5.5 Score=41.70 Aligned_cols=13 Identities=85% Similarity=0.644 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCC
Q 005118 684 SSSSSSDSGSSSS 696 (713)
Q Consensus 684 sSSSSSdSgSsSs 696 (713)
+|||||+|+||||
T Consensus 60 ssssSSssSSSsS 72 (225)
T PF10500_consen 60 SSSSSSSSSSSSS 72 (225)
T ss_pred CcCCCCCCCCCCC
Confidence 4444444333333
No 60
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=60.40 E-value=6.5 Score=45.89 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=6.8
Q ss_pred CChhhHHHHHHHHHhh
Q 005118 567 LPSEKLDNIVQIIKKR 582 (713)
Q Consensus 567 Lp~EkL~~VV~IIq~r 582 (713)
||.-+-..++.||-+.
T Consensus 480 ip~~q~~elc~mii~c 495 (739)
T KOG2140|consen 480 IPESQEKELCNMIIDC 495 (739)
T ss_pred CCchhhHHHHHHHHHH
Confidence 3333334444444443
No 61
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=59.14 E-value=7.3 Score=49.63 Aligned_cols=12 Identities=42% Similarity=0.404 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCC
Q 005118 697 DSETSSSGSEGG 708 (713)
Q Consensus 697 SdS~Sss~sd~~ 708 (713)
|+|+|+|+||.+
T Consensus 446 SESsS~SDSESE 457 (1191)
T PF05110_consen 446 SESSSSSDSESE 457 (1191)
T ss_pred CCccCccccccc
Confidence 344444444333
No 62
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=55.91 E-value=8.8 Score=42.28 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 005118 426 WYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 426 ~Y~s~~EF~~DVrLIF~NA 444 (713)
.|.-+.=|.+|+-.+..+-
T Consensus 157 dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 157 DYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hcCcchhhhHHHHHhcCcc
Confidence 5777777777775555443
No 63
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=53.29 E-value=1.9 Score=51.11 Aligned_cols=76 Identities=9% Similarity=-0.108 Sum_probs=67.8
Q ss_pred CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHH
Q 005118 388 GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIF 465 (713)
Q Consensus 388 a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~F 465 (713)
...|+.-+|.+. +|+||.+++-||-+.-+.+++..++|.....|..|+-++|.|+..|+....-++..+..|.+.+
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 345666666666 8999999999999999999999999999999999999999999999999999998888887653
No 64
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=49.50 E-value=2.4 Score=47.00 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=54.1
Q ss_pred HHHHHHHcCCCCCCCCCc----CCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 005118 377 ALLEKLMKHKHGWVFNAP----VDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (713)
Q Consensus 377 ~IL~kL~k~k~a~pF~~P----VD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS 452 (713)
..+....+|.....|..| ++... .++|..+|+.+|.+..+-+++.--.+.-..-|..+...||.+-..|+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~ 284 (345)
T KOG1632|consen 207 ELEEKKRKHFSNEELTEPAREPVDESE--APDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRN 284 (345)
T ss_pred hhhhhhhhhccCcccccccccCCCccc--ccccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhc
Confidence 344445555556666666 87776 899999999999998777655554455555666666667777777766554
Q ss_pred HHHHHHH
Q 005118 453 DVHIMAE 459 (713)
Q Consensus 453 ~V~~~A~ 459 (713)
.+|....
T Consensus 285 ~~~~c~~ 291 (345)
T KOG1632|consen 285 EVYKCPH 291 (345)
T ss_pred cceecCc
Confidence 4444433
No 65
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=48.73 E-value=46 Score=39.01 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHHHHH
Q 005118 589 HDDEIEVDIDSVDAETLWELDRFVTNY 615 (713)
Q Consensus 589 ~~dEIEIDIdtL~~~TLreLerYV~~~ 615 (713)
.+.++|||++.|++++...|.+--..|
T Consensus 196 ~D~Dve~D~~~ld~eq~~tlnkqg~~y 222 (653)
T KOG2548|consen 196 EDEDVEFDSNDLDDEQMETLNKQGEFY 222 (653)
T ss_pred cccccccccccCCHHHHHHHHhhhhhh
Confidence 456799999999999999997654443
No 66
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.05 E-value=9.7 Score=46.51 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=52.1
Q ss_pred CcCCccccCCCchhhhccCCCChHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 005118 393 APVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWY--------------K----------SPKE------FAEDVRLTFH 442 (713)
Q Consensus 393 ~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y--------------~----------s~~E------F~~DVrLIF~ 442 (713)
-++|... .|.|..+...|.+|+|++..|.+..| . ++.+ ...-+++|-.
T Consensus 88 ~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 3566555 78899999999999999999999877 2 3333 5566788889
Q ss_pred hhhhhCCCCCHHHHHHHHHHHH
Q 005118 443 NAMTYNPKGQDVHIMAEQLLKI 464 (713)
Q Consensus 443 NA~~YN~~gS~V~~~A~~Le~~ 464 (713)
||+.++.|++ +++-++.+.++
T Consensus 166 at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHH
Confidence 9999999999 44444444433
No 67
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=41.39 E-value=1e+02 Score=28.16 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 424 KNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 424 ~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
...|.|..-|...|..|-.....++..+..+..||..++..|++.|..+..-
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~ 54 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLL 54 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4578888899888888888888887778899999999999999999865443
No 68
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=38.96 E-value=25 Score=34.95 Aligned_cols=12 Identities=75% Similarity=0.659 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 005118 685 SSSSSDSGSSSS 696 (713)
Q Consensus 685 SSSSSdSgSsSs 696 (713)
|+|++||.|.++
T Consensus 142 SsSssdSdS~s~ 153 (177)
T KOG3116|consen 142 SSSSSDSDSESA 153 (177)
T ss_pred cCCCCccccccc
Confidence 333333333333
No 69
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=37.89 E-value=51 Score=39.00 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=14.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHhhhc
Q 005118 594 EVDIDSVDAETLWELDRFVTNYKKSLS 620 (713)
Q Consensus 594 EIDIdtL~~~TLreLerYV~~~kK~~~ 620 (713)
|+++|.+.-=+-..=..|+..|-+..+
T Consensus 39 efn~dd~n~wm~ldd~nflntwtknvs 65 (782)
T PF07218_consen 39 EFNVDDINSWMKLDDANFLNTWTKNVS 65 (782)
T ss_pred ccCcccchhcccccHHHHHHHHhhccc
Confidence 455555544333333567777765543
No 70
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=36.48 E-value=20 Score=37.68 Aligned_cols=13 Identities=62% Similarity=0.619 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCCC
Q 005118 683 SSSSSSSDSGSSS 695 (713)
Q Consensus 683 SsSSSSSdSgSsS 695 (713)
|.||+|++|||+|
T Consensus 228 sGssgs~~SgSGS 240 (241)
T PF11596_consen 228 SGSSGSGSSGSGS 240 (241)
T ss_pred ccCCCCCCCcCCC
Confidence 3333333344443
No 71
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=35.98 E-value=34 Score=40.20 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=11.2
Q ss_pred hccCC---CChHHHHHHHhcCCC
Q 005118 408 IIRHP---MDLGTVKTRLNKNWY 427 (713)
Q Consensus 408 IIK~P---MDL~TIKkKL~~~~Y 427 (713)
|||.| +||..=++-|-+-.|
T Consensus 437 IIKDPYKLLd~EKKkKlLgsYkY 459 (574)
T PF07462_consen 437 IIKDPYKLLDLEKKKKLLGSYKY 459 (574)
T ss_pred eecChHhhhCHHHHHHHhhhHHH
Confidence 67777 455554444444444
No 72
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=33.43 E-value=29 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHhHH
Q 005118 219 TKREMREIRKKLEIELD 235 (713)
Q Consensus 219 s~~e~~~l~~~l~~el~ 235 (713)
+..-.++||++-.-||.
T Consensus 13 ~~kr~~~~kr~arpel~ 29 (407)
T KOG2130|consen 13 PLKRSLELKRKARPELY 29 (407)
T ss_pred hHHHHHHHHHhcChhhh
Confidence 44445566666555554
No 73
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=30.84 E-value=66 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005118 416 GTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 416 ~TIKkKL~~~~Y~s~~EF~~DVrLIF~ 442 (713)
..|+.++..|.|.+..|+++|..++|.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999876554
No 74
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=26.88 E-value=1.4e+02 Score=30.42 Aligned_cols=46 Identities=11% Similarity=0.276 Sum_probs=38.0
Q ss_pred cccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 005118 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (713)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~ie~~ 247 (713)
+.|...++.|+|.|-.+|.+-|++|.+.+....|+.|.-...|-..
T Consensus 89 l~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~ 134 (185)
T PRK00083 89 LNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRD 134 (185)
T ss_pred CCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568899999999999999999999999999887766665544
No 75
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=26.00 E-value=1.6e+02 Score=29.95 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=38.4
Q ss_pred cccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 005118 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (713)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~ie~~ 247 (713)
+.|...++.|+|.|-.+|.+-|++|.+.++...|+.|.-...|-..
T Consensus 80 lnP~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~ 125 (176)
T TIGR00496 80 LNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRD 125 (176)
T ss_pred CCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568899999999999999999999999999888776666554
No 76
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=24.92 E-value=1.7e+02 Score=29.64 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=37.7
Q ss_pred cccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 005118 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (713)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~ie~~ 247 (713)
+.|...+..|+|.|-.+|.+-|++|.+.++...|+.|.-...|-..
T Consensus 85 l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~ 130 (179)
T cd00520 85 LNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRD 130 (179)
T ss_pred CCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444557799999999999999999999999999887766665443
No 77
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=24.61 E-value=60 Score=29.48 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHhhcCCCCC
Q 005118 550 RDMTYDEKQKLSTNLQS-LPSEKLDNIVQIIKKRNSSLFQ 588 (713)
Q Consensus 550 rpMT~eEK~kLs~dIn~-Lp~EkL~~VV~IIq~reP~l~~ 588 (713)
.-||.+|..+++..-+- |..++...|++||+....++.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn 52 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFN 52 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 36899999999999884 8889999999999987655543
Done!