Query 005118
Match_columns 713
No_of_seqs 399 out of 1514
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 3.8E-29 1.3E-33 234.0 9.8 108 367-474 19-129 (130)
2 3jvl_A Bromodomain-containing 100.0 4.5E-29 1.5E-33 229.9 8.9 109 367-475 6-117 (120)
3 3g0l_A Hwalp4, bromodomain adj 100.0 4.1E-28 1.4E-32 222.6 13.8 104 368-473 11-114 (117)
4 2oss_A HUNK1 protein, bromodom 99.9 7.7E-28 2.6E-32 224.3 13.0 106 368-473 19-124 (127)
5 2d9e_A Peregrin; four-helix bu 99.9 2.1E-27 7.1E-32 219.7 14.4 109 368-478 5-113 (121)
6 3d7c_A General control of amin 99.9 1.1E-27 3.6E-32 218.4 12.2 104 368-473 5-108 (112)
7 3mb3_A PH-interacting protein; 99.9 1.9E-27 6.4E-32 223.4 13.1 111 368-480 19-130 (135)
8 3p1f_A CREB-binding protein; s 99.9 2.1E-27 7E-32 218.5 13.1 108 368-475 9-117 (119)
9 3nxb_A CAT eye syndrome critic 99.9 1.2E-27 4.1E-32 219.1 10.8 102 368-471 14-115 (116)
10 4alg_A Bromodomain-containing 99.9 1.6E-27 5.3E-32 229.2 11.7 107 368-474 30-136 (154)
11 3q2e_A Bromodomain and WD repe 99.9 2.8E-27 9.6E-32 219.1 13.0 108 369-478 9-117 (123)
12 2dat_A Possible global transcr 99.9 2.6E-27 8.8E-32 219.4 12.4 104 368-473 11-120 (123)
13 1e6i_A Transcriptional activat 99.9 2.2E-27 7.6E-32 219.4 11.3 101 371-473 14-114 (121)
14 2ri7_A Nucleosome-remodeling f 99.9 6.6E-28 2.2E-32 234.4 8.1 142 294-472 30-172 (174)
15 3fkm_X Signaling protein; brom 99.9 3E-27 1E-31 229.8 12.7 107 367-473 18-124 (166)
16 2grc_A Probable global transcr 99.9 8.2E-27 2.8E-31 217.8 13.3 106 368-475 9-121 (129)
17 2i7k_A Bromodomain-containing 99.9 1E-26 3.5E-31 214.1 12.6 103 368-472 6-108 (117)
18 3rcw_A Bromodomain-containing 99.9 2.1E-26 7.3E-31 216.2 14.6 109 368-478 11-119 (135)
19 3mb4_A Protein polybromo-1; PB 99.9 8.1E-27 2.8E-31 216.3 10.7 104 368-473 13-122 (124)
20 2yyn_A Transcription intermedi 99.9 1.7E-26 5.7E-31 217.4 13.0 104 367-473 17-122 (135)
21 3iu5_A Protein polybromo-1; PB 99.9 1.3E-26 4.5E-31 212.4 11.8 103 369-473 4-112 (116)
22 3ljw_A Protein polybromo-1; al 99.9 2.4E-26 8.2E-31 212.0 12.7 106 368-475 6-117 (120)
23 3mqm_A Probable histone-lysine 99.9 3.3E-26 1.1E-30 212.5 13.3 109 368-478 7-121 (126)
24 3hme_A Bromodomain-containing 99.9 3.9E-26 1.3E-30 211.6 12.6 104 368-473 11-114 (123)
25 3k2j_A Protein polybromo-1; PB 99.9 7E-26 2.4E-30 212.1 13.1 106 368-475 15-126 (130)
26 3o36_A Transcription intermedi 99.9 2.2E-25 7.5E-30 218.9 15.6 104 366-472 77-182 (184)
27 3uv4_A Second bromodomain of h 99.9 3.7E-25 1.3E-29 213.6 13.1 109 368-478 23-136 (158)
28 2ro1_A Transcription intermedi 99.9 4.5E-25 1.5E-29 218.5 13.1 102 366-474 72-178 (189)
29 3u5n_A E3 ubiquitin-protein li 99.9 2E-24 6.8E-29 216.1 14.0 104 367-473 78-201 (207)
30 3dai_A ATPase family AAA domai 99.9 1.7E-24 5.8E-29 202.3 12.1 107 368-476 8-119 (130)
31 3tlp_A Protein polybromo-1; PB 99.9 1.8E-24 6.1E-29 206.5 11.8 103 372-476 26-135 (150)
32 3uv5_A Transcription initiatio 99.9 1.4E-23 4.7E-28 217.4 13.2 109 368-478 12-120 (265)
33 2dkw_A Hypothetical protein KI 99.9 2.6E-23 9E-28 195.0 11.3 96 368-470 10-109 (131)
34 3uv5_A Transcription initiatio 99.9 8.1E-23 2.8E-27 211.6 13.1 106 371-478 137-243 (265)
35 3aad_A Transcription initiatio 99.9 7E-23 2.4E-27 215.0 9.2 108 368-477 45-152 (292)
36 3aad_A Transcription initiatio 99.9 5.6E-22 1.9E-26 208.2 13.0 102 375-478 174-276 (292)
37 2r0y_A Chromatin structure-rem 99.8 2E-21 6.9E-26 205.8 11.2 86 385-472 178-263 (311)
38 2r10_A Chromatin structure-rem 99.8 1.9E-21 6.6E-26 209.6 9.9 86 385-472 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 3.1E-20 1.1E-24 200.2 7.9 101 368-472 76-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 7.4E-20 2.5E-24 193.8 8.0 100 369-472 27-129 (311)
41 2jns_A Bromodomain-containing 99.7 3.7E-19 1.3E-23 157.0 4.5 74 546-619 12-86 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 2.1E-16 7.2E-21 150.7 13.2 101 369-475 6-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.6 7.2E-16 2.5E-20 152.2 7.5 94 369-475 74-167 (183)
44 2lm0_A AF4/FMR2 family member 95.3 0.08 2.7E-06 48.9 9.3 64 549-613 56-120 (125)
45 1ise_A Ribosome recycling fact 22.1 1.4E+02 0.0047 29.3 6.2 44 201-244 88-131 (185)
46 1wqg_A Ribosome recycling fact 21.9 1.3E+02 0.0046 29.3 6.1 44 201-244 88-131 (185)
47 1dd5_A Ribosome recycling fact 21.6 1.4E+02 0.0047 29.3 6.1 44 201-244 88-131 (185)
48 1gk7_A Vimentin; intermediate 21.0 1.1E+02 0.0039 22.7 4.0 23 220-242 5-27 (39)
49 1is1_A Ribosome recycling fact 20.4 1.4E+02 0.0046 29.3 5.7 44 201-244 88-131 (185)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=3.8e-29 Score=234.03 Aligned_cols=108 Identities=43% Similarity=0.817 Sum_probs=103.3
Q ss_pred CchHHHHHHHHHHHHHHcCCC---CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 005118 367 TGSKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~---a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~N 443 (713)
.+.+++++|..||..|+.+++ +|+|..|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999986 89999999999888999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005118 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (713)
Q Consensus 444 A~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~ 474 (713)
|++||+++|.||.+|..|+++|+.+|+.|+.
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999998763
No 2
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=4.5e-29 Score=229.87 Aligned_cols=109 Identities=43% Similarity=0.819 Sum_probs=104.4
Q ss_pred CchHHHHHHHHHHHHHHcCCC---CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 005118 367 TGSKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~---a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~N 443 (713)
.+++++++|..||..|+++++ +|||..|||+..+++||||++|++||||+||++||+++.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 478899999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 444 A~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
|++||+++|.||.+|..|+++|++.|+.++.+
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999988643
No 3
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=4.1e-28 Score=222.55 Aligned_cols=104 Identities=34% Similarity=0.612 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
..+.++.|..||..|++|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 11 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 11 DSKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
|+++|.+|.+|..|+++|+++|+.+-
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999863
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=7.7e-28 Score=224.34 Aligned_cols=106 Identities=38% Similarity=0.670 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
..++...|..||..|++|+.+|+|..|||++.+++||||+||++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35666778889999999999999999999987779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
|+++|.||.+|..|+++|+++|+.++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998764
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=219.74 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+...|..||+.|++|+.+|+|.+|||+.. +||||+||++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
|+++|.+|.+|..|++.|+..|..+...+.+
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998766544
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=1.1e-27 Score=218.41 Aligned_cols=104 Identities=29% Similarity=0.497 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
..++...|..||..|++|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
|+++|.+|.+|..|+++|+++|+.+.
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998753
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=223.38 Aligned_cols=111 Identities=32% Similarity=0.539 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+.+.|..||..|++|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999866 9999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005118 448 NPK-GQDVHIMAEQLLKIFEDKWVVIESEYNREM 480 (713)
Q Consensus 448 N~~-gS~V~~~A~~Le~~FE~~~~~I~~e~~~e~ 480 (713)
|++ +|.||.+|..|+++|++.|..+..++...+
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~ 130 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSAL 130 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 999999999999999999999988876543
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=2.1e-27 Score=218.48 Aligned_cols=108 Identities=32% Similarity=0.569 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHHHc-CCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 368 GSKIFKSCSALLEKLMK-HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k-~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
..++.+.|..+|..|++ ++.+|+|.+|||+..+++||||++|++||||+||++||++|.|.++.+|..||+|||.||+.
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999998 67999999999999777999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
||+++|.||.+|..|+++|++.|..+...
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
No 9
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=1.2e-27 Score=219.12 Aligned_cols=102 Identities=27% Similarity=0.536 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
+.++++.|..||+.|++|+.+|+|..|||+.. +||||++|++||||+||++||+++.|.++.+|..||+|||.||+.|
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKY 91 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVV 471 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~ 471 (713)
|+++|.|+.+|..|+++|++.|.+
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998864
No 10
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.6e-27 Score=229.22 Aligned_cols=107 Identities=36% Similarity=0.644 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
..++...|..||+.|++++.+|+|.+|||+..+++||||+||++||||+||++||+++.|.++.+|++||+|||.||++|
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35566777889999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIES 474 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~ 474 (713)
|++++.||.+|..|+++|+++|+.++.
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999988753
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=219.07 Aligned_cols=108 Identities=36% Similarity=0.612 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
..+.++|..||..|++|+.+|+|..||++.. +||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 449 PK-GQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 449 ~~-gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
++ +|.||.+|..|+++|+++|+.+..++..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999999877643
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=219.44 Aligned_cols=104 Identities=27% Similarity=0.419 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHHHcCC------CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k------~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF 441 (713)
...+.+.|..||+.|++++ .+|+|.+||+... +||||+||++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999997 4899999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 442 ~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
.||++||++++.||.+|..|+++|++.|+.++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998764
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=2.2e-27 Score=219.42 Aligned_cols=101 Identities=32% Similarity=0.546 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 005118 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (713)
Q Consensus 371 l~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~ 450 (713)
.++.|..||..|++|+.+|+|..|||... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 005118 451 GQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 451 gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
+|.+|.+|..|+++|+++|+.++
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999875
No 14
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=6.6e-28 Score=234.36 Aligned_cols=142 Identities=25% Similarity=0.380 Sum_probs=120.1
Q ss_pred CCCCCCCccchhhc-cCCCCcchhhccCCchhhhhccchhhhhcccCCCCCCcCccccccCCccCCCcccCCCCCchHHH
Q 005118 294 SRPLNQLSISTVEN-SLGLSENVEKEKRTPKANQFYRNSEFLLAKDKFPPAESNKKSKLNGKKQAGNELAHGFGTGSKIF 372 (713)
Q Consensus 294 ~rp~~g~~v~i~en-sq~~~e~~~~ek~tp~~~q~~~~sef~l~~dk~pp~~s~K~~k~~~kk~~~~~~~~~~~~~~el~ 372 (713)
.+|||+.|+++... .....+|+|..|+....... .......+.+
T Consensus 30 ~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~-----------------------------------~~~~l~~~~~ 74 (174)
T 2ri7_A 30 QNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMT-----------------------------------VLTPLTEKDY 74 (174)
T ss_dssp CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHT-----------------------------------TTSBCCHHHH
T ss_pred CchhChhhcCCchhhccCccCeecCCCcchhcccc-----------------------------------ccccCCHHHH
Confidence 38999999998763 23345777777764321000 0011245688
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 005118 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (713)
Q Consensus 373 k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS 452 (713)
+.|..||..|++|+.+|+|..|||+.. +||||+||++||||+||++||+++.|.++.+|.+||+|||.||++||+++|
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 152 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 899999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005118 453 DVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 453 ~V~~~A~~Le~~FE~~~~~I 472 (713)
.||.+|..|+++|+++|+.+
T Consensus 153 ~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 153 PFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998765
No 15
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3e-27 Score=229.84 Aligned_cols=107 Identities=30% Similarity=0.545 Sum_probs=99.2
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 005118 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~ 446 (713)
...++.+.|..||..|++++.+|+|..|||+..+++||||+||++||||+||++||.++.|.++.+|+.||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 447 YNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 447 YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
||+++|.|+.+|..|+++|++.|..+.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999875
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=8.2e-27 Score=217.84 Aligned_cols=106 Identities=27% Similarity=0.412 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHcCC-------CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHK-------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLT 440 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k-------~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLI 440 (713)
...+.+.|..||+.|++++ .+|+|..||+... +||||+||++||||+||++||.++.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5789999999999999986 4899999999776 999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 441 FHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 441 F~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
|.||++||+++|.||.+|..|+++|+..|+.++..
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999998764
No 17
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=214.15 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+.+.|..||+.|++++.+|+|..|||+.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
|+++|.+|.+|..|++.|++.|...
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=216.20 Aligned_cols=109 Identities=28% Similarity=0.399 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
+..+...|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
|+++|.+|.+|..|++.|+..|..+...+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988766644
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=8.1e-27 Score=216.26 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHHHcCC------CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k------~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF 441 (713)
...+.+.|..||+.|++++ .+|+|..||+... +||||+||++||||+||++||+++.|.++.+|..||+|||
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999954 4799999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 442 ~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
.||+.||+++|.||.+|..|+++|++.|+++.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999874
No 20
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=217.40 Aligned_cols=104 Identities=32% Similarity=0.542 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHhh
Q 005118 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK--NWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~--~~Y~s~~EF~~DVrLIF~NA 444 (713)
+.+.+++.|..||..|++|+.+|+|..||+. ++||||+||++||||+||++||++ +.|.++.+|.+||+|||.||
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999997 389999999999999999999998 59999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
++||+++|.||.+|..|+++|+++|+++.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998874
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=212.38 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005118 369 SKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~ 442 (713)
.++++.|..||..|+++++ +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||.
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 81 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFN 81 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999864 999999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 443 NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
||+.||+++|.+|.+|..|+++|++.|+++.
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=2.4e-26 Score=211.97 Aligned_cols=106 Identities=31% Similarity=0.417 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF 441 (713)
...+.+.|..||+.|+++++ +++|.+||+... +||||+||++||||+||++||+++.|.++.+|..||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 46788899999999999887 999999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 442 ~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
.||+.||+++|.||.+|..|+++|+++|++|+..
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999998754
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=212.53 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF 441 (713)
...+.+.|..|++.|+++++ +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678899999999999865 899999999886 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 442 ~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
.||+.||+++|.+|.+|..|+++|++.|..+...+..
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~ 121 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDE 121 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877654
No 24
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=3.9e-26 Score=211.64 Aligned_cols=104 Identities=31% Similarity=0.376 Sum_probs=98.9
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+.+.|..||..|++++.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999886 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
|+++|.+|.+|..|++.|++.|.+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=7e-26 Score=212.11 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF 441 (713)
..++..+|..|++.|.++++ +|||.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 57889999999999998765 999999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 442 ~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
.||+.||+++|.||.+|..|+++|++.|+.+...
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988653
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.93 E-value=2.2e-25 Score=218.94 Aligned_cols=104 Identities=32% Similarity=0.551 Sum_probs=98.7
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHh
Q 005118 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK--NWYKSPKEFAEDVRLTFHN 443 (713)
Q Consensus 366 ~~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~--~~Y~s~~EF~~DVrLIF~N 443 (713)
.+...+++.|..||..|+.|+.+|+|..||+.. +||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999853 89999999999999999999998 7999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 444 A~~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
|++||++++.||.+|..|+++|++.|+.+
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=3.7e-25 Score=213.62 Aligned_cols=109 Identities=25% Similarity=0.470 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHH-----HcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005118 368 GSKIFKSCSALLEKL-----MKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 368 ~~el~k~C~~IL~kL-----~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~ 442 (713)
+......|..||..+ +.++.+|||..||++.. +||||+||++||||+||++||+++.|.++.+|..||+|||.
T Consensus 23 ~~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 23 MDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455566666666654 45788999999999886 99999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 443 NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
||++||+++|.||.+|..|+++|+..|..++..+..
T Consensus 101 Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~ 136 (158)
T 3uv4_A 101 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQ 136 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877654
No 28
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.92 E-value=4.5e-25 Score=218.53 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=95.6
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhcc--CCCChHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 005118 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIR--HPMDLGTVKTRLNKN---WYKSPKEFAEDVRLT 440 (713)
Q Consensus 366 ~~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK--~PMDL~TIKkKL~~~---~Y~s~~EF~~DVrLI 440 (713)
++....+++|..||..|+.|+.+|||++||+ |+||+||+ +||||+||++||+++ .|.++.+|++||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 4467788999999999999999999999998 68999998 899999999999999 999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005118 441 FHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (713)
Q Consensus 441 F~NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~ 474 (713)
|+||++|| +++.||.+|..|+++|+++|+++..
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999 5899999999999999999998754
No 29
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=2e-24 Score=216.05 Aligned_cols=104 Identities=35% Similarity=0.570 Sum_probs=98.4
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHh
Q 005118 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK---NWYKSPKEFAEDVRLTFHN 443 (713)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~---~~Y~s~~EF~~DVrLIF~N 443 (713)
....+++.|..||..|++|+.+|+|..||+. ++||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999986 389999999999999999999997 7999999999999999999
Q ss_pred hhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 005118 444 AMTYNP-----------------KGQDVHIMAEQLLKIFEDKWVVIE 473 (713)
Q Consensus 444 A~~YN~-----------------~gS~V~~~A~~Le~~FE~~~~~I~ 473 (713)
|++||+ +++.|+.+|..|+.+|+.+|+.+-
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 999999999999999999998863
No 30
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=1.7e-24 Score=202.31 Aligned_cols=107 Identities=25% Similarity=0.376 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
+.++...|..||..|+.|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH-HHHHHH
Q 005118 448 NPKGQDV----HIMAEQLLKIFEDKWV-VIESEY 476 (713)
Q Consensus 448 N~~gS~V----~~~A~~Le~~FE~~~~-~I~~e~ 476 (713)
|++++.+ +.+|..|++.|...+. .+..++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999876 7888889888888875 444444
No 31
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=206.48 Aligned_cols=103 Identities=25% Similarity=0.389 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCC-------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005118 372 FKSCSALLEKLMKHKH-------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (713)
Q Consensus 372 ~k~C~~IL~kL~k~k~-------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (713)
...|..||..|+++.. +++|..||+... +||||+||++||||+||++||+++.|.++.+|..||+|||.||
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 103 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNA 103 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5678888888887665 899999999876 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIESEY 476 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e~ 476 (713)
+.||+++|.||.+|..|+++|++.|+.+...+
T Consensus 104 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 104 RHYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999876433
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=1.4e-23 Score=217.39 Aligned_cols=109 Identities=26% Similarity=0.486 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+...|..||..|++|+.+|+|..||++.. +||||+||++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 45788999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
|+++|.|+.+|..|+++|+..|+.+..++.+
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999998776643
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=195.03 Aligned_cols=96 Identities=28% Similarity=0.437 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
+.++...|..||..|++|+.+|+|..| +||||+||++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQD----VHIMAEQLLKIFEDKWV 470 (713)
Q Consensus 448 N~~gS~----V~~~A~~Le~~FE~~~~ 470 (713)
|+++|+ |+.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999995 57899999999988774
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=8.1e-23 Score=211.61 Aligned_cols=106 Identities=25% Similarity=0.482 Sum_probs=95.8
Q ss_pred HHHHHHHHHH-HHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005118 371 IFKSCSALLE-KLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (713)
Q Consensus 371 l~k~C~~IL~-kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (713)
+...|..|+. .|+.|+.+|+|+.||+... +||||+||++||||+||++||++|.|.++.+|..||+|||.||+.||+
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3344555554 3778899999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 450 KGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 450 ~gS~V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
++|.||.+|..|+.+|+..|..+...+..
T Consensus 215 ~~s~~~~~A~~l~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 215 PESQYTKTAQEIVNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877643
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=7e-23 Score=215.02 Aligned_cols=108 Identities=25% Similarity=0.476 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 005118 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~Y 447 (713)
...+...|..||..|+.|+.+|+|..||++.. +||||+||++||||+||++||+++.|.++.+|..||+|||.||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYN 477 (713)
Q Consensus 448 N~~gS~V~~~A~~Le~~FE~~~~~I~~e~~ 477 (713)
|++++.|+.+|..|+++|+.+|+.++..+.
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 999999999999999999999998876543
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=208.16 Aligned_cols=102 Identities=25% Similarity=0.529 Sum_probs=93.3
Q ss_pred HHHHH-HHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH
Q 005118 375 CSALL-EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQD 453 (713)
Q Consensus 375 C~~IL-~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~ 453 (713)
+..++ .+|+.++.+|+|..|||... +||||+||++||||+||++||.+|.|.++.+|..||+|||.||+.||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 33433 34788899999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 454 VHIMAEQLLKIFEDKWVVIESEYNR 478 (713)
Q Consensus 454 V~~~A~~Le~~FE~~~~~I~~e~~~ 478 (713)
||.+|..|+++|+..|..+...+..
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~~ 276 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLTQ 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876643
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=2e-21 Score=205.75 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=83.2
Q ss_pred CCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 005118 385 HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKI 464 (713)
Q Consensus 385 ~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~ 464 (713)
|+.+|+|++|||... +||||+||++||||+||++||+++.|.++.+|.+||+|||+||++||+++|.||.+|..|+++
T Consensus 178 ~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 178 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005118 465 FEDKWVVI 472 (713)
Q Consensus 465 FE~~~~~I 472 (713)
|+.+|+++
T Consensus 256 f~~~~~~~ 263 (311)
T 2r0y_A 256 FNYLIQKE 263 (311)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=1.9e-21 Score=209.58 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=83.1
Q ss_pred CCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 005118 385 HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKI 464 (713)
Q Consensus 385 ~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~~gS~V~~~A~~Le~~ 464 (713)
|+.+|+|++|||... +||||+||++||||+||++||+++.|.++.+|..||+|||.||+.||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005118 465 FEDKWVVI 472 (713)
Q Consensus 465 FE~~~~~I 472 (713)
|+..|+.+
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999873
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=3.1e-20 Score=200.19 Aligned_cols=101 Identities=23% Similarity=0.208 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHHcCC--CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHhh
Q 005118 368 GSKIFKSCSALLEKLMKHK--HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK-SPKEFAEDVRLTFHNA 444 (713)
Q Consensus 368 ~~el~k~C~~IL~kL~k~k--~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~-s~~EF~~DVrLIF~NA 444 (713)
+..+...|..+|+.|.+.. .+|+|+.||+... +||||+||++||||+||++|| +.|. ++.+|+.||+|||.||
T Consensus 76 ~~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na 151 (361)
T 2r10_A 76 IPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 151 (361)
T ss_dssp CTTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHH
Confidence 4557788999999997754 4899999999877 999999999999999999999 5555 8999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 445 ~~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+.||+++|.||.+|..|+++|+..|.+.
T Consensus 152 ~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 152 QAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999864
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.79 E-value=7.4e-20 Score=193.81 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHcCC--CCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhh
Q 005118 369 SKIFKSCSALLEKLMKHK--HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK-SPKEFAEDVRLTFHNAM 445 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k--~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~-s~~EF~~DVrLIF~NA~ 445 (713)
+.+..+|..+|..+...- .+++|++||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 456677888888777643 4899999999877 999999999999999999999 5565 89999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005118 446 TYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (713)
Q Consensus 446 ~YN~~gS~V~~~A~~Le~~FE~~~~~I 472 (713)
+||+++|.||.+|..|+++|++.|.+.
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999875
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=3.7e-19 Score=157.03 Aligned_cols=74 Identities=39% Similarity=0.680 Sum_probs=69.2
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCC-CCCeEEEECCCCCHHHHHHHHHHHHHHHhhh
Q 005118 546 DPHKRDMTYDEKQKLSTNLQSLPSEKLDNIVQIIKKRNSSLFQ-HDDEIEVDIDSVDAETLWELDRFVTNYKKSL 619 (713)
Q Consensus 546 d~~krpMT~eEK~kLs~dIn~Lp~EkL~~VV~IIq~reP~l~~-~~dEIEIDIdtL~~~TLreLerYV~~~kK~~ 619 (713)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+.+ .++|||||||.|++.|||+|++||.+|++.+
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3467999999999999999999999999999999999999874 7899999999999999999999999997765
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=150.69 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005118 369 SKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~------a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~ 442 (713)
..+...+..|+..++.+++ +.+|.+.++.. |+||. ++||+|.+|++||..|.|.++.+|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999876 67899877655 78998 999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 443 NA~~YN~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
||+.||.+||.||.+|..|+++|...+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999988877543
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.60 E-value=7.2e-16 Score=152.19 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 005118 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (713)
Q Consensus 369 ~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDL~TIKkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN 448 (713)
.++...+..||..|..|+.+|+|+.. . +|.||||.||++||+.|.|.++.+|..||+|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-----------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-----------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-----------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-----------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 45667789999999999999999762 2 5999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005118 449 PKGQDVHIMAEQLLKIFEDKWVVIESE 475 (713)
Q Consensus 449 ~~gS~V~~~A~~Le~~FE~~~~~I~~e 475 (713)
..++.+..++..|+.+|++.++.+-..
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCC
Confidence 999999999999999999999887544
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.26 E-value=0.08 Score=48.93 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCh-hhHHHHHHHHHhhcCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Q 005118 549 KRDMTYDEKQKLSTNLQSLPS-EKLDNIVQIIKKRNSSLFQHDDEIEVDIDSVDAETLWELDRFVT 613 (713)
Q Consensus 549 krpMT~eEK~kLs~dIn~Lp~-EkL~~VV~IIq~reP~l~~~~dEIEIDIdtL~~~TLreLerYV~ 613 (713)
...--.+|.+.|-..|-.|-. +.|.+||++|.+. +.+...+..+.||+-+||..|++.|+.|+.
T Consensus 56 ~~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 56 CDKAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 334567899999999999986 5799999999986 456667899999999999999999999974
No 45
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=22.09 E-value=1.4e+02 Score=29.31 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=36.7
Q ss_pred ccccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005118 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRI 244 (713)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~i 244 (713)
|+.|.+.++.|+|.|--++.+-|++|.+..+.+.|+.|.-...|
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRni 131 (185)
T 1ise_A 88 GLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 (185)
T ss_dssp TCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666779999999999999999999999999998876554443
No 46
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=21.90 E-value=1.3e+02 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=36.6
Q ss_pred ccccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005118 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRI 244 (713)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~i 244 (713)
|+.|.+.++.|+|.|--++.+-|++|.+..+.+.|+-|.-...|
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRni 131 (185)
T 1wqg_A 88 GVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNI 131 (185)
T ss_dssp CCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666679999999999999999999999999998876554443
No 47
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=21.60 E-value=1.4e+02 Score=29.30 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=36.5
Q ss_pred ccccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005118 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRI 244 (713)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~i 244 (713)
|+.|.+.++.|+|.|--++.+-|++|.+..+.+.|+.|.-...|
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRni 131 (185)
T 1dd5_A 88 GLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNI 131 (185)
T ss_dssp CCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666679999999999999999999999999998876544443
No 48
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.04 E-value=1.1e+02 Score=22.70 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 005118 220 KREMREIRKKLEIELDTVRSLVK 242 (713)
Q Consensus 220 ~~e~~~l~~~l~~el~~vr~l~~ 242 (713)
|.++..|-.||.+=||.||.|-.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~ 27 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQ 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999974
No 49
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=20.40 E-value=1.4e+02 Score=29.34 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=36.5
Q ss_pred ccccccCCCeEEEecCCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005118 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRI 244 (713)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~~l~~el~~vr~l~~~i 244 (713)
|+.|.+.++.|+|.|--++.+-|++|.+..+.+.|+.|.-...|
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRni 131 (185)
T 1is1_A 88 GLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNI 131 (185)
T ss_dssp SCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565679999999999999999999999999998876554443
Done!