Query 005121
Match_columns 713
No_of_seqs 331 out of 1529
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 18:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 8.3E-15 1.8E-19 140.0 12.0 86 367-453 28-117 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.4E-13 7.3E-18 142.3 11.9 82 370-452 266-351 (352)
3 KOG0125 Ataxin 2-binding prote 99.4 1.9E-13 4.2E-18 144.2 8.1 81 370-451 93-175 (376)
4 KOG0153 Predicted RNA-binding 99.4 3.6E-13 7.8E-18 143.0 10.0 81 367-450 222-303 (377)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.5E-12 3.2E-17 137.5 10.6 79 373-452 3-85 (352)
6 KOG0149 Predicted RNA-binding 99.4 6.4E-13 1.4E-17 135.4 7.2 78 369-448 8-89 (247)
7 KOG0111 Cyclophilin-type pepti 99.4 2.9E-13 6.2E-18 136.8 3.7 80 371-451 8-91 (298)
8 TIGR01659 sex-lethal sex-letha 99.4 1.9E-12 4.2E-17 139.8 9.5 83 371-454 191-279 (346)
9 PF00076 RRM_1: RNA recognitio 99.3 3.1E-12 6.7E-17 103.6 8.2 67 376-443 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.3 3E-12 6.4E-17 138.4 10.0 81 370-451 104-188 (346)
11 PLN03120 nucleic acid binding 99.3 5E-12 1.1E-16 131.5 11.2 78 372-451 3-81 (260)
12 TIGR01645 half-pint poly-U bin 99.3 1.4E-11 3.1E-16 141.1 10.5 130 318-450 148-284 (612)
13 TIGR01645 half-pint poly-U bin 99.2 2.7E-11 5.7E-16 139.0 11.6 76 372-448 106-185 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.2 4E-11 8.6E-16 135.6 9.8 82 371-453 283-367 (562)
15 KOG0148 Apoptosis-promoting RN 99.2 7.8E-11 1.7E-15 122.3 10.4 83 368-453 159-241 (321)
16 PLN03121 nucleic acid binding 99.2 1.1E-10 2.4E-15 120.3 11.0 78 371-450 3-81 (243)
17 PLN03213 repressor of silencin 99.2 6.1E-11 1.3E-15 130.4 9.0 78 372-450 9-88 (759)
18 PF14259 RRM_6: RNA recognitio 99.2 1.1E-10 2.5E-15 96.1 8.3 67 376-443 1-70 (70)
19 TIGR01622 SF-CC1 splicing fact 99.2 1.1E-10 2.4E-15 128.0 10.6 79 371-450 184-266 (457)
20 smart00362 RRM_2 RNA recogniti 99.2 2.4E-10 5.3E-15 90.4 9.4 70 375-445 1-72 (72)
21 KOG0113 U1 small nuclear ribon 99.1 1.4E-10 3E-15 121.8 10.2 79 371-450 99-181 (335)
22 COG0724 RNA-binding proteins ( 99.1 2.9E-10 6.3E-15 109.7 9.9 76 373-449 115-194 (306)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.5E-10 7.6E-15 126.6 11.7 81 370-451 272-352 (481)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.1E-10 9E-15 125.0 11.9 80 371-451 293-376 (509)
25 KOG4207 Predicted splicing fac 99.1 1.3E-10 2.7E-15 117.1 7.0 80 370-450 10-93 (256)
26 TIGR01628 PABP-1234 polyadenyl 99.1 2.4E-10 5.3E-15 129.2 10.2 74 375-449 2-79 (562)
27 KOG0148 Apoptosis-promoting RN 99.1 1.5E-10 3.3E-15 120.2 6.9 76 375-451 64-143 (321)
28 KOG0124 Polypyrimidine tract-b 99.1 1.3E-10 2.8E-15 124.4 6.4 162 375-564 115-289 (544)
29 KOG0144 RNA-binding protein CU 99.1 1.3E-10 2.8E-15 126.5 6.3 86 371-457 122-213 (510)
30 TIGR01622 SF-CC1 splicing fact 99.1 5.6E-10 1.2E-14 122.5 10.5 80 369-450 85-168 (457)
31 KOG0122 Translation initiation 99.1 4.9E-10 1.1E-14 115.1 9.2 77 373-450 189-269 (270)
32 TIGR01648 hnRNP-R-Q heterogene 99.1 5.7E-10 1.2E-14 127.7 10.8 77 371-452 231-309 (578)
33 smart00360 RRM RNA recognition 99.1 7.1E-10 1.5E-14 87.2 8.1 63 383-445 5-71 (71)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 5.9E-10 1.3E-14 124.8 10.6 75 373-450 2-78 (481)
35 PF13893 RRM_5: RNA recognitio 99.0 7E-10 1.5E-14 88.7 8.0 56 391-447 1-56 (56)
36 KOG0107 Alternative splicing f 99.0 4.2E-10 9.2E-15 111.0 8.0 78 373-452 10-87 (195)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 7E-10 1.5E-14 127.0 9.7 78 371-449 56-137 (578)
38 cd00590 RRM RRM (RNA recogniti 99.0 2.6E-09 5.6E-14 84.9 9.6 71 375-446 1-74 (74)
39 KOG0126 Predicted RNA-binding 99.0 2.2E-10 4.7E-15 113.6 2.5 79 372-451 34-116 (219)
40 smart00361 RRM_1 RNA recogniti 99.0 1.9E-09 4.2E-14 90.5 7.6 57 388-444 2-69 (70)
41 KOG4205 RNA-binding protein mu 99.0 4.6E-10 1E-14 119.9 4.4 81 372-454 5-89 (311)
42 KOG0108 mRNA cleavage and poly 98.9 2.2E-09 4.8E-14 119.2 9.8 78 374-452 19-100 (435)
43 KOG0131 Splicing factor 3b, su 98.9 1.1E-09 2.5E-14 108.5 5.6 76 372-448 8-87 (203)
44 KOG0147 Transcriptional coacti 98.9 2.3E-09 5.1E-14 119.6 6.7 78 376-454 281-362 (549)
45 KOG0121 Nuclear cap-binding pr 98.8 6E-09 1.3E-13 98.7 6.4 78 370-448 33-114 (153)
46 KOG0127 Nucleolar protein fibr 98.8 8.4E-09 1.8E-13 115.2 8.5 81 373-454 117-200 (678)
47 KOG0132 RNA polymerase II C-te 98.8 1.5E-08 3.3E-13 116.6 9.0 94 367-463 415-508 (894)
48 KOG4205 RNA-binding protein mu 98.8 7.9E-09 1.7E-13 110.6 5.6 82 372-455 96-181 (311)
49 TIGR01642 U2AF_lg U2 snRNP aux 98.7 2.7E-08 5.8E-13 110.7 9.7 78 368-449 170-259 (509)
50 KOG0117 Heterogeneous nuclear 98.7 2.8E-08 6E-13 109.1 8.5 78 371-453 257-334 (506)
51 KOG0117 Heterogeneous nuclear 98.7 2.6E-08 5.7E-13 109.3 8.2 79 371-450 81-164 (506)
52 KOG0145 RNA-binding protein EL 98.7 5.1E-08 1.1E-12 101.3 9.0 81 370-451 38-122 (360)
53 KOG0114 Predicted RNA-binding 98.7 7.1E-08 1.5E-12 88.8 8.5 80 370-450 15-95 (124)
54 KOG0109 RNA-binding protein LA 98.6 4E-08 8.7E-13 103.3 6.9 73 375-452 4-76 (346)
55 KOG0105 Alternative splicing f 98.6 6.2E-08 1.3E-12 96.7 7.0 80 370-450 3-83 (241)
56 KOG0145 RNA-binding protein EL 98.6 1.3E-07 2.7E-12 98.4 9.0 78 372-450 277-358 (360)
57 KOG0127 Nucleolar protein fibr 98.6 7.6E-08 1.7E-12 107.7 7.0 79 374-453 6-88 (678)
58 KOG0144 RNA-binding protein CU 98.6 1E-07 2.2E-12 104.3 7.6 85 368-453 29-120 (510)
59 KOG0123 Polyadenylate-binding 98.6 1.5E-07 3.2E-12 103.1 8.4 77 375-453 78-156 (369)
60 KOG0130 RNA-binding protein RB 98.5 1.2E-07 2.7E-12 90.7 6.1 85 367-452 66-154 (170)
61 KOG4212 RNA-binding protein hn 98.5 1.9E-07 4.2E-12 102.3 8.1 80 368-448 39-122 (608)
62 KOG4206 Spliceosomal protein s 98.4 6E-07 1.3E-11 91.7 7.9 84 371-455 7-95 (221)
63 KOG0146 RNA-binding protein ET 98.3 6.7E-07 1.4E-11 93.5 6.1 97 372-469 18-121 (371)
64 KOG0124 Polypyrimidine tract-b 98.3 3.6E-07 7.9E-12 98.4 3.9 124 319-448 155-288 (544)
65 KOG0415 Predicted peptidyl pro 98.3 1.5E-06 3.4E-11 93.5 8.4 78 371-449 237-318 (479)
66 KOG0131 Splicing factor 3b, su 98.3 6.9E-07 1.5E-11 89.1 5.3 83 371-454 94-181 (203)
67 KOG0109 RNA-binding protein LA 98.3 7.9E-07 1.7E-11 93.8 5.6 81 370-455 75-155 (346)
68 KOG0123 Polyadenylate-binding 98.2 2.1E-06 4.6E-11 94.2 8.0 73 375-451 3-76 (369)
69 KOG0110 RNA-binding protein (R 98.2 2.9E-06 6.3E-11 97.6 7.8 72 376-448 518-596 (725)
70 KOG4208 Nucleolar RNA-binding 98.2 3E-06 6.6E-11 85.9 7.0 76 374-450 50-130 (214)
71 KOG4661 Hsp27-ERE-TATA-binding 98.1 4.2E-06 9.1E-11 94.2 6.5 77 372-449 404-484 (940)
72 KOG0110 RNA-binding protein (R 98.1 2.5E-06 5.5E-11 98.2 4.3 79 373-452 613-695 (725)
73 KOG4454 RNA binding protein (R 98.1 1.7E-06 3.6E-11 88.5 2.3 83 366-450 2-87 (267)
74 KOG0146 RNA-binding protein ET 98.0 4.6E-06 9.9E-11 87.4 4.4 79 373-452 285-367 (371)
75 KOG0116 RasGAP SH3 binding pro 97.9 2.9E-05 6.4E-10 86.5 8.6 74 374-449 289-366 (419)
76 KOG4209 Splicing factor RNPS1, 97.8 2.4E-05 5.3E-10 81.0 5.6 78 371-450 99-180 (231)
77 KOG4212 RNA-binding protein hn 97.8 3.8E-05 8.2E-10 84.8 7.2 76 368-446 531-607 (608)
78 KOG0106 Alternative splicing f 97.7 2.5E-05 5.3E-10 80.3 4.2 71 375-450 3-73 (216)
79 KOG0533 RRM motif-containing p 97.7 9.7E-05 2.1E-09 77.2 8.4 80 368-448 78-160 (243)
80 KOG2135 Proteins containing th 97.7 4.6E-05 9.9E-10 84.9 6.0 83 366-451 365-447 (526)
81 KOG0226 RNA-binding proteins [ 97.7 2.6E-05 5.6E-10 81.4 3.3 82 374-456 191-276 (290)
82 KOG0151 Predicted splicing reg 97.7 8.8E-05 1.9E-09 85.8 7.6 81 368-449 169-256 (877)
83 KOG4211 Splicing factor hnRNP- 97.4 0.0012 2.7E-08 74.2 12.0 75 374-451 11-87 (510)
84 KOG1548 Transcription elongati 97.3 0.0018 3.9E-08 70.3 11.5 78 370-448 131-219 (382)
85 KOG4660 Protein Mei2, essentia 97.1 0.00028 6.2E-09 80.0 3.4 74 368-443 70-143 (549)
86 PF00642 zf-CCCH: Zinc finger 97.1 0.00013 2.8E-09 51.7 0.2 24 230-253 2-26 (27)
87 KOG1190 Polypyrimidine tract-b 97.1 0.0015 3.2E-08 72.3 8.1 76 373-449 297-372 (492)
88 KOG0147 Transcriptional coacti 96.8 0.00052 1.1E-08 77.8 2.2 75 372-448 178-256 (549)
89 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0043 9.3E-08 50.5 5.5 52 374-429 2-53 (53)
90 smart00356 ZnF_C3H1 zinc finge 96.6 0.0011 2.5E-08 45.7 1.7 22 232-253 5-26 (27)
91 KOG4211 Splicing factor hnRNP- 96.5 0.011 2.3E-07 66.9 9.6 75 372-448 102-180 (510)
92 PF04059 RRM_2: RNA recognitio 96.4 0.016 3.5E-07 53.0 8.2 74 374-448 2-85 (97)
93 KOG0106 Alternative splicing f 96.3 0.0028 6E-08 65.5 3.1 69 372-445 98-166 (216)
94 PF11608 Limkain-b1: Limkain b 96.3 0.0075 1.6E-07 54.3 5.4 71 375-452 4-79 (90)
95 COG5175 MOT2 Transcriptional r 96.1 0.011 2.3E-07 64.4 6.4 81 370-450 111-203 (480)
96 KOG4210 Nuclear localization s 96.0 0.0042 9E-08 66.5 2.9 80 371-452 182-266 (285)
97 KOG1457 RNA binding protein (c 96.0 0.026 5.7E-07 58.7 8.3 82 371-453 32-121 (284)
98 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.03 6.5E-07 51.5 7.5 63 379-447 13-89 (100)
99 KOG0120 Splicing factor U2AF, 95.8 0.021 4.6E-07 65.3 7.5 61 389-449 424-491 (500)
100 PF00658 PABP: Poly-adenylate 95.5 0.013 2.8E-07 51.0 3.4 50 8-60 22-71 (72)
101 KOG0120 Splicing factor U2AF, 95.3 0.014 2.9E-07 66.8 3.8 80 371-451 287-370 (500)
102 KOG1548 Transcription elongati 95.3 0.051 1.1E-06 59.5 7.8 85 367-451 259-353 (382)
103 smart00517 PolyA C-terminal do 95.1 0.023 5E-07 48.6 3.6 50 8-60 11-60 (64)
104 PF08777 RRM_3: RNA binding mo 95.0 0.033 7.1E-07 51.4 4.7 54 377-433 5-58 (105)
105 KOG1855 Predicted RNA-binding 95.0 0.014 3E-07 65.1 2.5 64 371-435 229-309 (484)
106 PF14608 zf-CCCH_2: Zinc finge 94.9 0.015 3.2E-07 38.4 1.5 19 233-253 1-19 (19)
107 KOG4307 RNA binding protein RB 94.8 0.037 8.1E-07 64.8 5.3 81 371-452 432-516 (944)
108 KOG1456 Heterogeneous nuclear 94.7 0.17 3.6E-06 56.1 9.8 78 372-450 286-363 (494)
109 KOG1995 Conserved Zn-finger pr 94.7 0.038 8.3E-07 60.5 4.8 83 369-452 62-156 (351)
110 KOG2314 Translation initiation 94.6 0.038 8.3E-07 63.5 4.8 57 389-445 79-139 (698)
111 PF08952 DUF1866: Domain of un 94.3 0.15 3.3E-06 50.0 7.5 74 371-449 25-106 (146)
112 KOG2185 Predicted RNA-processi 93.8 0.023 5E-07 63.1 1.0 25 230-254 139-163 (486)
113 KOG1677 CCCH-type Zn-finger pr 93.8 0.031 6.7E-07 60.0 1.8 28 227-254 173-201 (332)
114 KOG0129 Predicted RNA-binding 93.3 0.26 5.7E-06 56.4 8.2 77 369-450 255-341 (520)
115 KOG2202 U2 snRNP splicing fact 93.0 0.043 9.3E-07 57.9 1.4 59 389-447 83-145 (260)
116 KOG0129 Predicted RNA-binding 92.9 0.29 6.3E-06 56.1 7.7 87 358-448 357-452 (520)
117 KOG4849 mRNA cleavage factor I 92.7 0.09 2E-06 57.7 3.4 73 375-448 82-160 (498)
118 KOG3152 TBP-binding protein, a 92.2 0.083 1.8E-06 55.9 2.2 67 374-441 75-157 (278)
119 KOG1996 mRNA splicing factor [ 91.9 0.33 7.2E-06 52.5 6.3 62 388-449 300-366 (378)
120 KOG4206 Spliceosomal protein s 91.8 0.58 1.3E-05 48.8 7.7 77 370-448 143-220 (221)
121 KOG1457 RNA binding protein (c 90.1 0.33 7.2E-06 50.8 4.1 68 368-436 205-272 (284)
122 KOG2891 Surface glycoprotein [ 88.6 0.42 9.2E-06 51.3 3.7 36 373-408 149-195 (445)
123 PF08675 RNA_bind: RNA binding 87.2 1.8 3.9E-05 39.3 6.2 56 372-433 8-63 (87)
124 KOG4307 RNA binding protein RB 86.3 2 4.4E-05 51.1 7.7 72 374-446 868-943 (944)
125 KOG4285 Mitotic phosphoprotein 85.9 1.5 3.2E-05 47.8 5.9 61 387-450 209-270 (350)
126 KOG1039 Predicted E3 ubiquitin 85.0 0.34 7.3E-06 53.5 0.7 22 232-253 9-30 (344)
127 KOG1456 Heterogeneous nuclear 84.9 4.3 9.3E-05 45.5 9.0 77 373-451 120-200 (494)
128 KOG4676 Splicing factor, argin 83.9 1.7 3.7E-05 48.8 5.4 75 375-451 9-90 (479)
129 KOG2068 MOT2 transcription fac 83.8 0.43 9.2E-06 52.3 0.8 80 371-450 75-163 (327)
130 KOG1190 Polypyrimidine tract-b 83.5 2.9 6.3E-05 47.3 7.0 77 371-448 412-489 (492)
131 PF04847 Calcipressin: Calcipr 83.0 3.6 7.7E-05 41.9 6.9 62 387-450 8-71 (184)
132 KOG0128 RNA-binding protein SA 81.1 0.2 4.4E-06 60.1 -3.1 73 371-444 665-741 (881)
133 PF10309 DUF2414: Protein of u 80.9 6.7 0.00014 33.6 6.7 54 374-432 6-62 (62)
134 PF15023 DUF4523: Protein of u 79.4 6.3 0.00014 39.2 6.9 74 370-447 83-159 (166)
135 KOG1365 RNA-binding protein Fu 75.4 5.9 0.00013 44.6 6.1 76 371-447 157-240 (508)
136 KOG0128 RNA-binding protein SA 74.8 1.7 3.6E-05 52.7 2.0 75 373-448 736-813 (881)
137 PF03880 DbpA: DbpA RNA bindin 72.6 12 0.00025 32.3 6.2 59 384-447 11-74 (74)
138 KOG0112 Large RNA-binding prot 70.2 1.1 2.4E-05 54.4 -0.9 77 370-447 369-448 (975)
139 KOG0112 Large RNA-binding prot 69.9 5.3 0.00011 48.9 4.5 82 370-454 452-535 (975)
140 KOG2193 IGF-II mRNA-binding pr 69.7 3.4 7.4E-05 46.9 2.8 76 374-452 2-78 (584)
141 KOG0115 RNA-binding protein p5 69.3 4.4 9.4E-05 43.4 3.3 74 374-448 32-112 (275)
142 KOG0105 Alternative splicing f 69.0 13 0.00029 38.4 6.5 69 375-447 117-187 (241)
143 COG5084 YTH1 Cleavage and poly 66.5 2.9 6.2E-05 45.4 1.4 24 231-254 134-158 (285)
144 KOG2494 C3H1-type Zn-finger pr 66.3 2 4.2E-05 47.2 0.1 23 231-253 37-60 (331)
145 KOG1365 RNA-binding protein Fu 65.6 6.1 0.00013 44.5 3.6 72 375-447 282-359 (508)
146 KOG1763 Uncharacterized conser 64.0 2.6 5.6E-05 45.9 0.4 22 232-253 93-114 (343)
147 PF07576 BRAP2: BRCA1-associat 62.2 33 0.00072 32.3 7.4 65 375-439 14-81 (110)
148 KOG2416 Acinus (induces apopto 58.4 12 0.00026 44.2 4.5 81 366-449 437-521 (718)
149 KOG1492 C3H1-type Zn-finger pr 56.3 4.7 0.0001 42.4 0.7 21 233-253 208-229 (377)
150 KOG1040 Polyadenylation factor 56.0 7 0.00015 43.2 2.0 26 228-253 74-99 (325)
151 KOG4210 Nuclear localization s 52.3 8.1 0.00018 41.8 1.8 80 371-451 86-169 (285)
152 PF10650 zf-C3H1: Putative zin 52.3 7.9 0.00017 27.2 1.1 19 233-252 2-21 (23)
153 KOG1595 CCCH-type Zn-finger pr 51.9 7.3 0.00016 45.4 1.4 25 229-253 234-258 (528)
154 COG5152 Uncharacterized conser 47.5 7.5 0.00016 40.4 0.6 25 229-253 139-164 (259)
155 KOG1040 Polyadenylation factor 46.5 7.7 0.00017 42.9 0.5 27 228-254 131-157 (325)
156 KOG2591 c-Mpl binding protein, 46.3 29 0.00062 41.0 4.9 71 371-444 172-246 (684)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 43.4 21 0.00045 36.0 3.0 68 372-440 6-83 (176)
158 KOG1677 CCCH-type Zn-finger pr 33.2 21 0.00045 38.6 1.2 27 227-253 128-156 (332)
159 PF11767 SET_assoc: Histone ly 32.5 2.8E+02 0.0061 24.1 7.7 58 382-444 8-65 (66)
160 COG5084 YTH1 Cleavage and poly 31.8 23 0.0005 38.6 1.3 24 230-253 103-126 (285)
161 KOG4454 RNA binding protein (R 29.1 12 0.00026 39.6 -1.3 52 383-434 93-147 (267)
162 PF15513 DUF4651: Domain of un 28.6 76 0.0017 27.4 3.6 18 389-406 9-26 (62)
163 KOG2253 U1 snRNP complex, subu 27.3 30 0.00064 41.5 1.3 68 373-446 40-107 (668)
164 COG5252 Uncharacterized conser 26.9 23 0.00049 37.9 0.2 22 232-253 86-107 (299)
165 KOG2333 Uncharacterized conser 24.0 37 0.0008 39.7 1.2 25 233-257 116-141 (614)
166 KOG1813 Predicted E3 ubiquitin 23.9 27 0.00058 38.4 0.1 25 229-253 184-209 (313)
167 KOG1492 C3H1-type Zn-finger pr 22.9 31 0.00068 36.4 0.4 23 232-255 262-284 (377)
168 KOG2494 C3H1-type Zn-finger pr 20.0 48 0.001 36.8 1.1 23 230-253 70-92 (331)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=8.3e-15 Score=140.02 Aligned_cols=86 Identities=16% Similarity=0.296 Sum_probs=78.1
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEE
Q 005121 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (713)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I 442 (713)
++....+++|||+++ ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 28 ~~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 28 GSLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455566789999988 578999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEEeCccCCCC
Q 005121 443 LVKPYKEKGKV 453 (713)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (713)
+|++++++...
T Consensus 107 ~V~~a~~~~~~ 117 (144)
T PLN03134 107 RVNPANDRPSA 117 (144)
T ss_pred EEEeCCcCCCC
Confidence 99999877543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=3.4e-13 Score=142.29 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
....++|||+++ ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.||+..|+||.|+|.
T Consensus 266 ~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 266 DGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344568999998 478999999999999999999999987 799999999999999999999999999999999999
Q ss_pred eCccCCC
Q 005121 446 PYKEKGK 452 (713)
Q Consensus 446 ~Ak~K~k 452 (713)
++..|.+
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9988754
No 3
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.9e-13 Score=144.19 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D--rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
...-+.|||.+| .|++.|.||+.+|++||+|.||.|+.. -+||||||||++.++|++|-++|++..|.||+|+|..|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345678999988 799999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred ccCC
Q 005121 448 KEKG 451 (713)
Q Consensus 448 k~K~ 451 (713)
+.|-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 9884
No 4
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.6e-13 Score=143.03 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=73.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceecCeEEEEE
Q 005121 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (713)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~l-ng~~I~GR~I~Vk 445 (713)
+..+...++|||+++.+ .++|.+|+++|.+||+|+.|+|.. .+++|||+|.+.+.|+.|.++. |...|+|++|+|+
T Consensus 222 pPeD~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 35578899999999876 899999999999999999999987 7889999999999999998765 7889999999999
Q ss_pred eCccC
Q 005121 446 PYKEK 450 (713)
Q Consensus 446 ~Ak~K 450 (713)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 98873
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=1.5e-12 Score=137.47 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=73.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
..+|||+++ ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|+.|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 679999998 678999999999999999999999986 689999999999999999999999999999999999987
Q ss_pred cCCC
Q 005121 449 EKGK 452 (713)
Q Consensus 449 ~K~k 452 (713)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6653
No 6
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=6.4e-13 Score=135.37 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
.+..=++||||++ .|.++.|+|++||++||+|+++.|+.| |+||||||||.+.|.|.+|++. ....|+||+..|
T Consensus 8 ~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 4556689999988 699999999999999999999999998 9999999999999999999998 667899999999
Q ss_pred EeCc
Q 005121 445 KPYK 448 (713)
Q Consensus 445 k~Ak 448 (713)
+.|.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 8874
No 7
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.9e-13 Score=136.83 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=75.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
...||||||.+++ .+||.-|...|-.||.|.+|.||.| ++||||||+|...|+|..|+.+||..+|+||.|+|..
T Consensus 8 ~~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4679999999865 6999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred CccCC
Q 005121 447 YKEKG 451 (713)
Q Consensus 447 Ak~K~ 451 (713)
|++.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98764
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=1.9e-12 Score=139.83 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecC--eEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~G--R~I~V 444 (713)
...++|||+++ ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||++.|+| +.|+|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 35678999988 678999999999999999999999986 678999999999999999999999999977 78999
Q ss_pred EeCccCCCCc
Q 005121 445 KPYKEKGKVP 454 (713)
Q Consensus 445 k~Ak~K~k~~ 454 (713)
++++++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998775543
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=3.1e-12 Score=103.60 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=62.8
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEE
Q 005121 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (713)
Q Consensus 376 IYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~ 443 (713)
|||+++ +.++|+++|+++|++||.|..|.|+.+ +++|||||+|.+.++|++|++.|+++.|+|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799987 578999999999999999999999884 8899999999999999999999999999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=3e-12 Score=138.40 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
....++|||++| ++++||++|+++|++||+|++|+|++| ++||||||+|.++++|++|++.||++.|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456789999987 688999999999999999999999987 789999999999999999999999999999999999
Q ss_pred eCccCC
Q 005121 446 PYKEKG 451 (713)
Q Consensus 446 ~Ak~K~ 451 (713)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 887643
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=5e-12 Score=131.54 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=71.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
..|+|||+++ ++.+||++|+++|+.||+|++|+|+.| ..+|||||+|.+++.|+.|+. ||+..|+||.|.|.++..-
T Consensus 3 ~~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 3689999998 578999999999999999999999998 478999999999999999996 7999999999999997654
Q ss_pred C
Q 005121 451 G 451 (713)
Q Consensus 451 ~ 451 (713)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=1.4e-11 Score=141.11 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=92.2
Q ss_pred chhhhhhHhhhhhHHHHHHHH-HHhhhhhhhhhcccCccc--ccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHH
Q 005121 318 PKSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSRLE--RNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNY 394 (713)
Q Consensus 318 ~k~~~~llq~~~~esQR~~~~-~a~~l~ed~~k~g~~R~~--RsDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEEdLre~ 394 (713)
.|+|+|+......+++++... +...+..+..+.++.... .....+. ........++|||+++ +.++++++|+++
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~--~~~~~~~~~rLfVgnL-p~~vteedLk~l 224 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM--VQEEAKKFNRIYVASV-HPDLSETDIKSV 224 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccccc--ccccccccceEEeecC-CCCCCHHHHHHH
Confidence 366777777666777776542 222333333333221100 0000000 0011234579999988 578999999999
Q ss_pred hhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 395 FSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 395 FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++..+
T Consensus 225 Fs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 225 FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999986 68999999999999999999999999999999999988754
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=2.7e-11 Score=138.97 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..++|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+||.|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999987 789999999999999999999999987 79999999999999999999999999999999999865
Q ss_pred c
Q 005121 448 K 448 (713)
Q Consensus 448 k 448 (713)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=4e-11 Score=135.59 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=74.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
....+|||+++ ++++|+++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568999988 567999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 005121 448 KEKGKV 453 (713)
Q Consensus 448 k~K~k~ 453 (713)
..|...
T Consensus 362 ~~k~~~ 367 (562)
T TIGR01628 362 QRKEQR 367 (562)
T ss_pred cCcHHH
Confidence 877543
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=7.8e-11 Score=122.33 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
...+.+.++|||+++. -+||+++|+.|+.||+|.+|||.+ -+||+||.|.+.|.|..||..||+.+|.|..|++.|-
T Consensus 159 Qssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 4567889999999976 689999999999999999999998 6899999999999999999999999999999999998
Q ss_pred ccCCCC
Q 005121 448 KEKGKV 453 (713)
Q Consensus 448 k~K~k~ 453 (713)
++-...
T Consensus 236 Ke~~~~ 241 (321)
T KOG0148|consen 236 KEGDDG 241 (321)
T ss_pred ccCCCC
Confidence 766543
No 16
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=120.28 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
+...+|||+++ ++++||++|+++|+.||+|++|+|++| +.+|||||+|.+++.|+.|+. |++..|.++.|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 45589999988 789999999999999999999999998 778999999999999999995 599999999999998765
Q ss_pred C
Q 005121 450 K 450 (713)
Q Consensus 450 K 450 (713)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 4
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=99.17 E-value=6.1e-11 Score=130.41 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCH--HHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~--E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
..-.||||++ .|.+|++||+..|++||.|.+|.||+...||||||+|... +.+.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999988 7999999999999999999999999887799999999987 789999999999999999999998876
Q ss_pred C
Q 005121 450 K 450 (713)
Q Consensus 450 K 450 (713)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.1e-10 Score=96.05 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEE
Q 005121 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (713)
Q Consensus 376 IYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~ 443 (713)
|||++++ +++++++|+++|+.||.|.+|++.++ +.+|+|||+|.+.++|++|++..+++.|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999885 57999999999999999999999986 4689999999999999999999888999999885
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.1e-10 Score=128.03 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
+..++|||+++. +.+||++|+++|++||.|..|+|++| ++||||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 447999999984 68999999999999999999999976 6799999999999999999999999999999999999
Q ss_pred CccC
Q 005121 447 YKEK 450 (713)
Q Consensus 447 Ak~K 450 (713)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8744
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.4e-10 Score=90.38 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=63.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D--rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
+|||+++ +..+++++|+++|.+||+|.++++..+ .++|+|||+|.+.+.|++|++.++++.+.|+.|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899988 567899999999999999999999875 467999999999999999999999999999999874
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.4e-10 Score=121.78 Aligned_cols=79 Identities=14% Similarity=0.327 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
--=+||||+.+ .+.++|..|+++|+.||+|+.|+||+| ++||||||+|.+.-+.+.|++..++..|+|+.|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34489999987 689999999999999999999999997 9999999999999999999999999999999999976
Q ss_pred CccC
Q 005121 447 YKEK 450 (713)
Q Consensus 447 Ak~K 450 (713)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 4433
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.9e-10 Score=109.71 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.9
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
.++|||+++ ++.+|+++|+++|.+||.|..|+|+.| ++||||||+|.+.++|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999998 489999999999999999999999886 899999999999999999999999999999999999975
Q ss_pred c
Q 005121 449 E 449 (713)
Q Consensus 449 ~ 449 (713)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=3.5e-10 Score=126.59 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
...+++|||++++...+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|..|++.||++.|.|+.|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3567899999997667999999999999999999999986 579999999999999999999999999999999998865
Q ss_pred CC
Q 005121 450 KG 451 (713)
Q Consensus 450 K~ 451 (713)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 53
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=4.1e-10 Score=125.01 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
...++|||+++ ++.+|+++|+++|++||.|..|+|++| +++|||||+|.+.+.|..|++.||+..|.|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999988 678999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred CccCC
Q 005121 447 YKEKG 451 (713)
Q Consensus 447 Ak~K~ 451 (713)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 86543
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.10 E-value=1.3e-10 Score=117.12 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
...-.+|-|-|| .+.++.++|+.+|++||.|-+|.||.| ++||||||.|.+..+|+.|++.|++..|+|+.|.|.
T Consensus 10 v~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 344467888776 689999999999999999999999998 899999999999999999999999999999999998
Q ss_pred eCccC
Q 005121 446 PYKEK 450 (713)
Q Consensus 446 ~Ak~K 450 (713)
.|+-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 77644
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.4e-10 Score=129.25 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
+|||+++ +.++||++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.+|...|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999988 578999999999999999999999987 7889999999999999999999999999999999998753
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-10 Score=120.18 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
-++|+++ ...++-|+||+.|.+||+|.+++|++| |+||||||.|-+.++|+.||..||++.|.+|.|+-.||+.|
T Consensus 64 hvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 64 HVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 5788876 457889999999999999999999998 99999999999999999999999999999999999999887
Q ss_pred C
Q 005121 451 G 451 (713)
Q Consensus 451 ~ 451 (713)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 6
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.3e-10 Score=124.38 Aligned_cols=162 Identities=17% Similarity=0.244 Sum_probs=107.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
.||||.| .|.+.|+.||..|..||+|.+|.+-.| ++|||+||+|.-+|.|..|++.||+..+.||.|+|.+-..-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 3788866 789999999999999999999999877 99999999999999999999999999999999999843322
Q ss_pred CCCchhHHhhhhhcCCCCCCCCCCCCCCCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCccccc
Q 005121 451 GKVPDKKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDVK 530 (713)
Q Consensus 451 ~k~~~~~~~qq~erG~fS~~~sP~g~d~rdp~dl~~GaR~~~n~teE~l~RrklEEq~ElqqAiElqrRrL~~lql~d~~ 530 (713)
.....-...-+.+-..| .|.|....|..| . ..+++..+|-.+.-+.+ ||.--.
T Consensus 194 pQAQpiID~vqeeAk~f--------------------nRiYVaSvHpDL-----S-e~DiKSVFEAFG~I~~C-~LAr~p 246 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKF--------------------NRIYVASVHPDL-----S-ETDIKSVFEAFGEIVKC-QLARAP 246 (544)
T ss_pred cccchHHHHHHHHHHhh--------------------heEEeeecCCCc-----c-HHHHHHHHHhhcceeeE-EeeccC
Confidence 22111111111221111 223322111111 1 12334455555443333 222222
Q ss_pred c-cCcc--------cccCCCCCCCCCCCCCCCCCcccccCCCC
Q 005121 531 K-HHHH--------RALSTGSPIPSPTHSPNIFHQNLVFPPLH 564 (713)
Q Consensus 531 ~-~~h~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (713)
+ +.|. +..|...+|++++-|+..++--++.-|.-
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 2 3344 56778889999999999998888765443
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.3e-10 Score=126.48 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCc-ee--cCeEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDARVLV 444 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~-~I--~GR~I~V 444 (713)
...|++||+.+ .-.+||.+|+++|++||.|++|+|.+| .+||||||+|.+.|.|..|++.||+. .+ |...+.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 34688899866 568999999999999999999999997 99999999999999999999999973 44 6678999
Q ss_pred EeCccCCCCchhH
Q 005121 445 KPYKEKGKVPDKK 457 (713)
Q Consensus 445 k~Ak~K~k~~~~~ 457 (713)
|||..++.+..+.
T Consensus 201 kFADtqkdk~~~~ 213 (510)
T KOG0144|consen 201 KFADTQKDKDGKR 213 (510)
T ss_pred EecccCCCchHHH
Confidence 9998776655443
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=5.6e-10 Score=122.51 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=72.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
.....++|||+++ ++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+ |++..|.|+.|.|
T Consensus 85 ~~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 85 AERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred cccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 3466899999988 578999999999999999999999986 789999999999999999997 5999999999999
Q ss_pred EeCccC
Q 005121 445 KPYKEK 450 (713)
Q Consensus 445 k~Ak~K 450 (713)
+....+
T Consensus 163 ~~~~~~ 168 (457)
T TIGR01622 163 QSSQAE 168 (457)
T ss_pred eecchh
Confidence 876543
No 31
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.9e-10 Score=115.13 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=72.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
..+|-|+++. -+++|++|+++|.+||.|.+|.|.+| .+||||||+|.+.++|.+|++.||++-+++-.+.|.|++
T Consensus 189 ~~tvRvtNLs-ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLS-EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCc-cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4589999884 57999999999999999999999987 999999999999999999999999999999999999998
Q ss_pred cC
Q 005121 449 EK 450 (713)
Q Consensus 449 ~K 450 (713)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.05 E-value=5.7e-10 Score=127.72 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqF--G~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
...++|||+++ ++++||++|+++|++| |+|++|+++ |+||||+|.+.++|++|++.||+.+|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999988 5789999999999999 999999886 4799999999999999999999999999999999998
Q ss_pred cCCC
Q 005121 449 EKGK 452 (713)
Q Consensus 449 ~K~k 452 (713)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 8654
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=7.1e-10 Score=87.23 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 383 ~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
++.+++++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 577899999999999999999999875 458999999999999999999999999999999873
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.05 E-value=5.9e-10 Score=124.78 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh--CCCceecCeEEEEEeCccC
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~--lng~~I~GR~I~Vk~Ak~K 450 (713)
+|+|||+++ ++.+||++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++. +++..|+|+.|.|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 789999988 67899999999999999999999997 789999999999999999986 4789999999999998754
No 35
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=7e-10 Score=88.67 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 391 Lre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
|.++|++||+|++|.+..++ +++|||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999875
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.2e-10 Score=110.95 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCCC
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 452 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~k 452 (713)
.+++|||++ ..++++.+|+..|..||+|..|.|-. ...|||||+|.++.+|+.|+..|++..|||.+|.|...+.+..
T Consensus 10 ~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 689999988 57899999999999999999998876 5889999999999999999999999999999999998876543
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.02 E-value=7e-10 Score=126.98 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceec-CeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~-GR~I~Vk~ 446 (713)
....+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999988 578999999999999999999999987 89999999999999999999999999885 78887776
Q ss_pred Ccc
Q 005121 447 YKE 449 (713)
Q Consensus 447 Ak~ 449 (713)
+.+
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 643
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.6e-09 Score=84.94 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
+|||+++ ++.+++++|+++|..||.|..+.+..+ +.+|+|||+|.+.+.|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5889887 456899999999999999999999886 3589999999999999999999999999999999863
No 39
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=2.2e-10 Score=113.61 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=72.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
.+--||||++ ++..||.||--+|++||+|++|.+++| +++||||..|.+....-.|+.+||+..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3557999987 799999999999999999999999998 99999999999999999999999999999999999776
Q ss_pred ccCC
Q 005121 448 KEKG 451 (713)
Q Consensus 448 k~K~ 451 (713)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5443
No 40
>smart00361 RRM_1 RNA recognition motif.
Probab=98.96 E-value=1.9e-09 Score=90.52 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.6
Q ss_pred HHHHHHHhh----cCCCeeEEE-eecc------CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 388 EEdLre~Fs----qFG~VedVr-Ip~D------rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|++.||+..++||.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=4.6e-10 Score=119.95 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=75.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
...+|+|+.+ +|.+++|.|++||++||+|.+|.|++| ++|||+||+|.+++.+.++|.. ..|.|+||.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 6789999987 899999999999999999999999998 9999999999999999999987 889999999999999
Q ss_pred ccCCCCc
Q 005121 448 KEKGKVP 454 (713)
Q Consensus 448 k~K~k~~ 454 (713)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 8886543
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=2.2e-09 Score=119.23 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
+.||||++ .++++|++|.++|++.|.|.++++++| +.|||||++|.+.++++.|++.||+.++.||+|+|.++..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 99999987 789999999999999999999999997 9999999999999999999999999999999999999876
Q ss_pred CCC
Q 005121 450 KGK 452 (713)
Q Consensus 450 K~k 452 (713)
+..
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.92 E-value=1.1e-09 Score=108.52 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=71.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
+..|||||++ +..++|+-|.++|-+.|+|.+|+||+| .++|||||+|.++|+|+-|++-||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3469999988 567999999999999999999999997 79999999999999999999999999999999999988
Q ss_pred c
Q 005121 448 K 448 (713)
Q Consensus 448 k 448 (713)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.87 E-value=2.3e-09 Score=119.63 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=73.4
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCC
Q 005121 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (713)
Q Consensus 376 IYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~ 451 (713)
+|||++ +++++|++|+.+|+.||.|+.|.+++| ++||||||+|.+.++|++|++.||+-+|-||.|+|....++.
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999987 799999999999999999999999987 899999999999999999999999999999999999888776
Q ss_pred CCc
Q 005121 452 KVP 454 (713)
Q Consensus 452 k~~ 454 (713)
+..
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 544
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6e-09 Score=98.72 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
.+.+.||||+++ ++-++||+|.++|+++|+|..|.+-.| ..-||+||+|-..++|+.|+.-+++..|+.|.|.|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 366789999987 677999999999999999999987666 566999999999999999999999999999999998
Q ss_pred eCc
Q 005121 446 PYK 448 (713)
Q Consensus 446 ~Ak 448 (713)
|-.
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 743
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=8.4e-09 Score=115.16 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=73.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
.-.|.|+++ +|.+.+.+|+.+|+.||.|.+|.||+. +-.|||||+|.+..+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 446777766 799999999999999999999999973 6679999999999999999999999999999999999998
Q ss_pred CCCCc
Q 005121 450 KGKVP 454 (713)
Q Consensus 450 K~k~~ 454 (713)
|....
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 87543
No 47
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=1.5e-08 Score=116.61 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=82.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
......+||||||.+ +-+++|.||+++|+.||+|++|.++- .||+|||+.....+|++|+.+|+.+.+.++.|+|.|
T Consensus 415 d~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred cceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 355677899999988 67899999999999999999999987 899999999999999999999999999999999999
Q ss_pred CccCCCCchhHHhhhhh
Q 005121 447 YKEKGKVPDKKQQQQVE 463 (713)
Q Consensus 447 Ak~K~k~~~~~~~qq~e 463 (713)
+..++-+.+.+.-+..+
T Consensus 492 a~g~G~kse~k~~wD~~ 508 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVE 508 (894)
T ss_pred eccCCcchhhhhhhhcc
Confidence 99988666444433333
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=7.9e-09 Score=110.61 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=75.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..++|||+.+ +..++|+++++||.+||.|.++.|++| ++||||||+|.+.+.+++++.. .-|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 4679999977 578999999999999999999999998 9999999999999999999988 999999999999999
Q ss_pred ccCCCCch
Q 005121 448 KEKGKVPD 455 (713)
Q Consensus 448 k~K~k~~~ 455 (713)
.+|.....
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 99875443
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.75 E-value=2.7e-08 Score=110.69 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=66.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcC------------CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCc
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqF------------G~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~ 435 (713)
...+..|+|||++| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 55788899999998 5789999999999974 4566666655 79999999999999999995 8999
Q ss_pred eecCeEEEEEeCcc
Q 005121 436 FVCDARVLVKPYKE 449 (713)
Q Consensus 436 ~I~GR~I~Vk~Ak~ 449 (713)
.|.|+.|+|.....
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999976543
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.8e-08 Score=109.10 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
..-+-|||+++. -++|||.|++.|++||.|++|..++| ||||.|.++++|-+|++.||+++|+|..|.|..|++-
T Consensus 257 s~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 455789999985 57999999999999999999999864 9999999999999999999999999999999999876
Q ss_pred CCC
Q 005121 451 GKV 453 (713)
Q Consensus 451 ~k~ 453 (713)
.+.
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 543
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.6e-08 Score=109.25 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCcee-cCeEEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVLVK 445 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I-~GR~I~Vk 445 (713)
..-.+||||.| +-++.|++|.-+|++-|+|-++|||+| .+||||||||.+.+.|++|++.+|.++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55679999988 568999999999999999999999997 8999999999999999999999999988 68888886
Q ss_pred eCccC
Q 005121 446 PYKEK 450 (713)
Q Consensus 446 ~Ak~K 450 (713)
....+
T Consensus 160 ~Svan 164 (506)
T KOG0117|consen 160 VSVAN 164 (506)
T ss_pred Eeeec
Confidence 65543
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=5.1e-08 Score=101.30 Aligned_cols=81 Identities=12% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
+.....+.|..+ +-++|+|+||.+|+..|+|++|++++| ++-|||||-|.++++|++|+..+|+-.|..+.|+|.
T Consensus 38 ~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred Ccccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 444556666666 568999999999999999999999998 888999999999999999999999999999999999
Q ss_pred eCccCC
Q 005121 446 PYKEKG 451 (713)
Q Consensus 446 ~Ak~K~ 451 (713)
.|++..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998764
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=7.1e-08 Score=88.75 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
...+|-+||.++ ++++|.|++-++|++||.|..|||-.. .-||-|||.|.+..+|++|++.|++..+++|-+.|-.+.
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 456788999987 789999999999999999999999665 789999999999999999999999999999999999886
Q ss_pred cC
Q 005121 449 EK 450 (713)
Q Consensus 449 ~K 450 (713)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=4e-08 Score=103.34 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCCC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 452 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~k 452 (713)
++|||+++ -++++.+|+.+|++||+|.+|.|++ .||||-..+...++.|+.+|++..|+|..|.|+.++.|.+
T Consensus 4 KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLP-REATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCC-cccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 68999884 5789999999999999999999985 7999999999999999999999999999999999988844
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=6.2e-08 Score=96.69 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
.+.++.|||+++ +.++.|.+|+++|.+||.|.+|.+..- ..-.||||+|.++.+|+.|+.--++..++|.++.|.++.
T Consensus 3 gr~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 3 GRNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred CcccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 366789999988 468999999999999999999988542 345799999999999999999999999999999999876
Q ss_pred cC
Q 005121 449 EK 450 (713)
Q Consensus 449 ~K 450 (713)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=1.3e-07 Score=98.43 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=70.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..--|||=++ ..+.+|.-|.++|++||.|..|+|++| +.||||||+..+.++|.-|+..||+..+.+|.+.|.+-
T Consensus 277 ~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3457888776 457889999999999999999999998 99999999999999999999999999999999999876
Q ss_pred ccC
Q 005121 448 KEK 450 (713)
Q Consensus 448 k~K 450 (713)
..|
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 544
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=7.6e-08 Score=107.69 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
-||||+++ .+.++.++|.++|+.+|+|..+.++.+ ++||||||+|.-.|++++|++..+...|.||.|.|.+++.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999987 588999999999999999999999985 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 005121 450 KGKV 453 (713)
Q Consensus 450 K~k~ 453 (713)
|...
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 7643
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1e-07 Score=104.35 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCC-ceec--Ce
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNP-HFVC--DA 440 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng-~~I~--GR 440 (713)
..+...-++||+.| +-.++|+|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..++. ..|- ..
T Consensus 29 ~~d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 44566779999987 467899999999999999999999998 8899999999999999999999865 3443 45
Q ss_pred EEEEEeCccCCCC
Q 005121 441 RVLVKPYKEKGKV 453 (713)
Q Consensus 441 ~I~Vk~Ak~K~k~ 453 (713)
.|.|++|...+++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7899998654433
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.5e-07 Score=103.10 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCCC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 452 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D--rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~k 452 (713)
.|||-++ +-.++..+|.+.|+.||+|.+|+|.+| -+||| ||.|.+.+.|++|++.||+..++|++|.|..+..+..
T Consensus 78 ~~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3999987 457899999999999999999999987 79999 9999999999999999999999999999988877654
Q ss_pred C
Q 005121 453 V 453 (713)
Q Consensus 453 ~ 453 (713)
.
T Consensus 156 r 156 (369)
T KOG0123|consen 156 R 156 (369)
T ss_pred h
Confidence 3
No 60
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=1.2e-07 Score=90.68 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEE
Q 005121 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (713)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I 442 (713)
+.-.-..=-|||+.+. -..||++|.+.|..||+|..|.+-.| -.|||+.|+|.+.+.|++|++.||+..|-|..|
T Consensus 66 PqrSVEGwIi~VtgvH-eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVH-EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEeccC-cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3333444578999874 57899999999999999999999877 678999999999999999999999999999999
Q ss_pred EEEeCccCCC
Q 005121 443 LVKPYKEKGK 452 (713)
Q Consensus 443 ~Vk~Ak~K~k 452 (713)
.|.|+--+..
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999865543
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=1.9e-07 Score=102.32 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=71.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhc-CCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEE
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSI-YGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~Fsq-FG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~ 443 (713)
......|.+||++| +|++.=.+|+++|.+ .|+|+.|.+..| |+||+|.|+|+++|.+++|++.||+++++||.|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 44455678999988 688888999999975 799999999998 9999999999999999999999999999999999
Q ss_pred EEeCc
Q 005121 444 VKPYK 448 (713)
Q Consensus 444 Vk~Ak 448 (713)
||--.
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98543
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.41 E-value=6e-07 Score=91.73 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHH----HhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre----~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
..+.||||.++.+ .+..++|++ +|++||+|.+|....- +.||-|||.|.+.+.|-.|+..|++-.+.|+.++|.
T Consensus 7 ~pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3445999998865 678888888 9999999999988754 899999999999999999999999999999999999
Q ss_pred eCccCCCCch
Q 005121 446 PYKEKGKVPD 455 (713)
Q Consensus 446 ~Ak~K~k~~~ 455 (713)
+|+.+.....
T Consensus 86 yA~s~sdii~ 95 (221)
T KOG4206|consen 86 YAKSDSDIIA 95 (221)
T ss_pred cccCccchhh
Confidence 9988765443
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=6.7e-07 Score=93.45 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=72.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCc-eecC--eEEEEE
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FVCD--ARVLVK 445 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~-~I~G--R~I~Vk 445 (713)
..|++|||-+ .-.-.|||||..|..||+|++|.+.+. .+|||+||+|.+..+|..||..|++. .+-| ..+.||
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4567777755 456789999999999999999999884 89999999999999999999998863 4444 457888
Q ss_pred eCccCCCCc-hhHHhhhhhcCCCCC
Q 005121 446 PYKEKGKVP-DKKQQQQVERGEFSP 469 (713)
Q Consensus 446 ~Ak~K~k~~-~~~~~qq~erG~fS~ 469 (713)
++...+++. .++++--.+-|.|++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~P 121 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNP 121 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCc
Confidence 885444333 344444445565543
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=3.6e-07 Score=98.44 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=92.9
Q ss_pred hhhhhhHhhhhhHHHHHHHH-HHhhhhhhhhhcccCc-----ccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHH
Q 005121 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSR-----LERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVS 392 (713)
Q Consensus 319 k~~~~llq~~~~esQR~~~~-~a~~l~ed~~k~g~~R-----~~RsDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEEdLr 392 (713)
|.|.|+...-.+.+|-+..+ ++.|||.+..|.|+.. ..-.| | +--..+.=..|||..+ +-+.+|+||+
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID---~--vqeeAk~fnRiYVaSv-HpDLSe~DiK 228 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID---M--VQEEAKKFNRIYVASV-HPDLSETDIK 228 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHH---H--HHHHHHhhheEEeeec-CCCccHHHHH
Confidence 55555444334555655554 6889999999998631 01111 0 0011123357999866 4578999999
Q ss_pred HHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 393 NYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 393 e~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
..|+.||+|..|.+-++ .+|||||++|.+...-..|+..||-..|.|.-++|....
T Consensus 229 SVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 229 SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999876 899999999999999999999999999999999997653
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-06 Score=93.49 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCC----ceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKR----MFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsR----GFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
+--.-|||--+.+ -+|+|||+-+|+.||+|..|.|++|+.- -||||+|.+.+++++|+=+|+...|+.|+|.|.+
T Consensus 237 PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4446788865544 3678999999999999999999998444 4999999999999999999999999999999977
Q ss_pred Ccc
Q 005121 447 YKE 449 (713)
Q Consensus 447 Ak~ 449 (713)
.+.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 643
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.31 E-value=6.9e-07 Score=89.12 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedV-rIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
...-.|||+++.. .++|.-|.+.|+.||.+.+. .|++| .++|||||.|.+.|.+.+|++.||+..+++|+|.|.
T Consensus 94 ~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3447899999866 99999999999999998775 66664 889999999999999999999999999999999999
Q ss_pred eCccCCCCc
Q 005121 446 PYKEKGKVP 454 (713)
Q Consensus 446 ~Ak~K~k~~ 454 (713)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 987765443
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=7.9e-07 Score=93.81 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
+..+.+|.|+++ ..++|..+||..|++||+|.+|.|++ +|+||.|+..++|..|+..||+.+|+|++++|...+.
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 457889999988 56889999999999999999999985 8999999999999999999999999999999998887
Q ss_pred CCCCch
Q 005121 450 KGKVPD 455 (713)
Q Consensus 450 K~k~~~ 455 (713)
|-....
T Consensus 150 rlrtap 155 (346)
T KOG0109|consen 150 RLRTAP 155 (346)
T ss_pred ccccCC
Confidence 754433
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.1e-06 Score=94.19 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~ 451 (713)
.+||| .++||.+|.+.|+.+|+|.+|+|.+| -+-|||||.|.++++|++||+.||...|.|++|++-|.....
T Consensus 3 sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 68999999999999999999999887 688999999999999999999999999999999999987654
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=2.9e-06 Score=97.64 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 376 IYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-------rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
|||.|+ .|++|.++++.+|.+.|.|.+|+|..- .+.|||||+|.+.++|+.|++.|+++.|+|+.|.|+.+.
T Consensus 518 lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999987 699999999999999999999999762 234999999999999999999999999999999999887
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=3e-06 Score=85.86 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=66.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqF-G~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
.-+||..+. .-+.|..+..||.+| |.|..+|+-+. .+||||||+|.+.+.|+-|-+.||+..|.++.+.|..-.
T Consensus 50 g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 346777664 567899999999999 88888888664 899999999999999999999999999999999998765
Q ss_pred cC
Q 005121 449 EK 450 (713)
Q Consensus 449 ~K 450 (713)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=4.2e-06 Score=94.24 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..|.++|..+ ...+...||+++|++||+|+-.+|++. --|.|||||+.+.++|.++|+.|+.++|.||-|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4578999877 456778999999999999999999986 55789999999999999999999999999999999877
Q ss_pred cc
Q 005121 448 KE 449 (713)
Q Consensus 448 k~ 449 (713)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 63
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=2.5e-06 Score=98.16 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
-.+|.|.++ .|..+-.+|+++|+.||.|.+||||.- -+||||||+|.++.+|..|++.|..+.|.||++.+.|++
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 458999987 688999999999999999999999872 679999999999999999999999999999999999997
Q ss_pred cCCC
Q 005121 449 EKGK 452 (713)
Q Consensus 449 ~K~k 452 (713)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 6653
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.06 E-value=1.7e-06 Score=88.52 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEE
Q 005121 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (713)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I 442 (713)
+.++...-|||||++. ...++||-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+
T Consensus 2 gaaaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 2 GAAAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred CCCCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 3456678899999976 668999999999999999999999875 555 99999999999999999999999999999
Q ss_pred EEEeCccC
Q 005121 443 LVKPYKEK 450 (713)
Q Consensus 443 ~Vk~Ak~K 450 (713)
.|++-...
T Consensus 80 q~~~r~G~ 87 (267)
T KOG4454|consen 80 QRTLRCGN 87 (267)
T ss_pred hcccccCC
Confidence 99876544
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=4.6e-06 Score=87.37 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
.-.|||-++ .-++.+.+|-++|-.||.|.+.+|..| ++|.||||.|+++..++.||..||+-.|.=++++|..-+
T Consensus 285 GCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 285 GCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred cceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 345777665 457899999999999999999999877 999999999999999999999999999999999998776
Q ss_pred cCCC
Q 005121 449 EKGK 452 (713)
Q Consensus 449 ~K~k 452 (713)
+|..
T Consensus 364 Pkda 367 (371)
T KOG0146|consen 364 PKDA 367 (371)
T ss_pred cccc
Confidence 6653
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.91 E-value=2.9e-05 Score=86.50 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~----DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
.+|||.++ +.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.+.++.|+++ +...|++|++.|+--+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45999987 57899999999999999999999864 34458999999999999999999 89999999999975443
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.81 E-value=2.4e-05 Score=81.05 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
...+.+||+++ ++.+|-+++..+|+-||.|..|.|++| ++|||+||+|.+.+.+..++. ||+..|.|+.|.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45788999987 566676679999999999999999997 679999999999999999999 799999999999987
Q ss_pred CccC
Q 005121 447 YKEK 450 (713)
Q Consensus 447 Ak~K 450 (713)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.80 E-value=3.8e-05 Score=84.82 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
.+.+...||+|.++ ++++|=+.||+-|.+||.|..+.|+.. ++|| .|.|.++++|++|+..|++..|+||.|+|..
T Consensus 531 gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 531 GAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34566678999987 689999999999999999999999654 7776 9999999999999999999999999999975
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=2.5e-05 Score=80.27 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
.+||+.+ .|.+.+++|+.+|..||.|.+|.+.. |||||.|.+.-+|..|+..+|+.+|+|-++.|.+++.+
T Consensus 3 rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRL-PYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeeccc-CCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899976 68899999999999999999998854 99999999999999999999999999999888888754
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.73 E-value=9.7e-05 Score=77.20 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
.......+|||.|+ ++.++++||+++|.+||++..+-|-+| ++.|.|=|+|...++|..|++.+++.-++|+.+++
T Consensus 78 ~~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 34556689999987 689999999999999999999999887 88899999999999999999999999999999988
Q ss_pred EeCc
Q 005121 445 KPYK 448 (713)
Q Consensus 445 k~Ak 448 (713)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6553
No 80
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.71 E-value=4.6e-05 Score=84.90 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
.|.+....+.+-+.-.+-.--|-++|..+|.+||+|++|.|-+ +---|.|||.+..+|-+|... .+..|++|.|+|.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3566777777777654444456799999999999999999966 333589999999999888877 8999999999999
Q ss_pred eCccCC
Q 005121 446 PYKEKG 451 (713)
Q Consensus 446 ~Ak~K~ 451 (713)
|..+-.
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987643
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.68 E-value=2.6e-05 Score=81.37 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
-.||.|-+ .-+++++-|...|.+|=.-...++++| +++|||||.|.+++++..|+.+||+.+++.|.|+......
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 36777633 235899999999999999999999998 9999999999999999999999999999999999987766
Q ss_pred CCCCchh
Q 005121 450 KGKVPDK 456 (713)
Q Consensus 450 K~k~~~~ 456 (713)
|.+..+.
T Consensus 270 keRn~dv 276 (290)
T KOG0226|consen 270 KERNLDV 276 (290)
T ss_pred HhhhhHH
Confidence 6644443
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.67 E-value=8.8e-05 Score=85.77 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------cCCCceEEEEECCHHHHHHHHHhCCCceecCe
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~-------DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR 440 (713)
..++..+.+||+++.+ .++|+.|-..|+.||+|..|+|+. ++-|-||||.|.+..+|++|++.|++..+.++
T Consensus 169 dgDP~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3468889999999854 699999999999999999999986 27788999999999999999999999999999
Q ss_pred EEEEEeCcc
Q 005121 441 RVLVKPYKE 449 (713)
Q Consensus 441 ~I~Vk~Ak~ 449 (713)
.++..|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999854
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.41 E-value=0.0012 Score=74.17 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccCC
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D--rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K~ 451 (713)
..|-+..+ +|++|++||.++|+.+ .|+++.+++. |..|=|||+|.+.|++++|+++ +...+..|=|.|..+..+.
T Consensus 11 ~~vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcc
Confidence 34444555 7999999999999999 5788888875 8999999999999999999999 9999999999998776554
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.31 E-value=0.0018 Score=70.32 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceec
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~Ved--------VrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~ 438 (713)
...+..|||.+++ .++|-+++.++|+++|-|.+ |+|-++ +-||=|.+.|...|+|+.|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3556679999884 57899999999999998864 344444 88999999999999999999999999999
Q ss_pred CeEEEEEeCc
Q 005121 439 DARVLVKPYK 448 (713)
Q Consensus 439 GR~I~Vk~Ak 448 (713)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999997774
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.00028 Score=79.99 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEE
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~ 443 (713)
-.+...|+|+|.++ +-++++++|+++|+.||+|..|+.-. .++|-.||+|-|..+|++|++.|++.+|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34677899999987 56899999999999999999987643 3799999999999999999999999999999998
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.10 E-value=0.00013 Score=51.72 Aligned_cols=24 Identities=46% Similarity=1.066 Sum_probs=18.1
Q ss_pred CCcccccccc-ccCCCCCCCcccCC
Q 005121 230 GWRPCLYFAR-GYCKNGSSCRFVHG 253 (713)
Q Consensus 230 g~kpC~YFar-G~CK~GssCrF~Hg 253 (713)
.-++|.+|.+ |.|++|.+|+|.|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 3578987777 99999999999997
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.09 E-value=0.0015 Score=72.28 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
+-.|-|.++.+..+|++.|-.+|+-||.|.+|+|.+.+ +--|.|.|.+...|..|++.|+++.|.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 67888999999999999999999999999999999853 46899999999999999999999999999999987753
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.84 E-value=0.00052 Score=77.82 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=65.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..||+|+-.++ -+.++-+|.++|+.+|+|.+|+|+.| ++||.+||+|.+.+.+-.|+.. .|+.+.|..|.|+..
T Consensus 178 d~Rtvf~~qla-~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQLA-RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHHHh-hcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEeccc
Confidence 34566665443 57789999999999999999999998 8999999999999999999964 999999999999876
Q ss_pred c
Q 005121 448 K 448 (713)
Q Consensus 448 k 448 (713)
.
T Consensus 256 E 256 (549)
T KOG0147|consen 256 E 256 (549)
T ss_pred H
Confidence 4
No 89
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.64 E-value=0.0043 Score=50.54 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=41.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHH
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kAL 429 (713)
+.|-|..-... ..+.|..+|.+||+|.++++.. .+-+.||+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 55666432221 3477888999999999999984 5679999999999999985
No 90
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.60 E-value=0.0011 Score=45.73 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.4
Q ss_pred ccccccccccCCCCCCCcccCC
Q 005121 232 RPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 232 kpC~YFarG~CK~GssCrF~Hg 253 (713)
.+|.+|.+|.|+.|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.53 E-value=0.011 Score=66.88 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=61.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~Ved-VrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
..-.|-++.+ +|.+||+||.++|+-.=.|.+ |-++.| ++-|=|||.|.++|.|++||.. +...|..|=|+|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3345556665 799999999999998866666 445555 8889999999999999999999 999999999999765
Q ss_pred c
Q 005121 448 K 448 (713)
Q Consensus 448 k 448 (713)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.37 E-value=0.016 Score=53.04 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceec----CeEEE
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~Fsq--FG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~----GR~I~ 443 (713)
+||-|.+| +-..|.++|.+++.+ .|...-+.+|.| -..|||||-|.+++.|.+-.+.++++.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68889887 457888988888776 478888899988 66899999999999999999998887775 45566
Q ss_pred EEeCc
Q 005121 444 VKPYK 448 (713)
Q Consensus 444 Vk~Ak 448 (713)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66664
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.0028 Score=65.48 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=58.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
+..-|.|..+ ...+...+|+++|+.||++..+.+ .++++||.|...+++++|++.+++..+.|+.|.|.
T Consensus 98 s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3445556644 445777999999999999966655 47999999999999999999999999999999993
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.29 E-value=0.0075 Score=54.28 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=45.6
Q ss_pred eEEEcCCCCCCCCH----HHHHHHhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 375 QIYLTFPADSTFRE----EDVSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 375 tIYVg~~~~~~~TE----EdLre~FsqF-G~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
.+||.+++.. .+- ..|++++.-+ |.|.+| ..+-|+|.|.+++.|.+|.+.|++..+.|++|.|.+...
T Consensus 4 ~L~V~NLP~~-~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPTN-KDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--TT-S-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred EEEEecCCCC-CCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5788887653 333 4556666677 588887 568999999999999999999999999999999998754
Q ss_pred CCC
Q 005121 450 KGK 452 (713)
Q Consensus 450 K~k 452 (713)
.+.
T Consensus 77 ~r~ 79 (90)
T PF11608_consen 77 NRE 79 (90)
T ss_dssp S--
T ss_pred ccc
Confidence 433
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.10 E-value=0.011 Score=64.36 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=62.9
Q ss_pred CCCcceEEEcCCCCCCCCHH---HH--HHHhhcCCCeeEEEeecc-----CCCc-e-EEEEECCHHHHHHHHHhCCCcee
Q 005121 370 NPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHFV 437 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEE---dL--re~FsqFG~VedVrIp~D-----rsRG-F-GFVTF~~~E~A~kALe~lng~~I 437 (713)
..+..-+||-.+..--..|+ .| .+||++||.|..|-|-+. .--+ + -||||...|+|.+++...++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 45667889988877666666 34 489999999999988542 1112 2 39999999999999999999999
Q ss_pred cCeEEEEEeCccC
Q 005121 438 CDARVLVKPYKEK 450 (713)
Q Consensus 438 ~GR~I~Vk~Ak~K 450 (713)
+||.|+...-+.|
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999998654433
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.02 E-value=0.0042 Score=66.51 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=69.7
Q ss_pred CCcceEE-EcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEE
Q 005121 371 PASRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (713)
Q Consensus 371 ~~sRtIY-Vg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk 445 (713)
-.+.+|| |+ ..++.+++++|+.+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+.+.
T Consensus 182 ~~s~~~~~~~-~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVG-ELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeec-ccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3456788 55 44889999999999999999999999875 8999999999999999999987 8899999999998
Q ss_pred eCccCCC
Q 005121 446 PYKEKGK 452 (713)
Q Consensus 446 ~Ak~K~k 452 (713)
...++.+
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 7776654
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.99 E-value=0.026 Score=58.73 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-c----CCCceEEEEECCHHHHHHHHHhCCCceec---CeEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q----QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARV 442 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~-D----rsRGFGFVTF~~~E~A~kALe~lng~~I~---GR~I 442 (713)
.+-||+||..++ -++-..+|..+|..|---+.+.|.+ + -.+-+|||+|.+...|..|+..|||..|+ +..+
T Consensus 32 ~~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 346999998774 5788899999999997777776644 2 23469999999999999999999999994 7788
Q ss_pred EEEeCccCCCC
Q 005121 443 LVKPYKEKGKV 453 (713)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (713)
.+..|+...+.
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 88888765543
No 98
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.90 E-value=0.03 Score=51.55 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=47.7
Q ss_pred cCCCCCCCCHHHHHHHhhcCCCeeEEE-------------eeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEE-E
Q 005121 379 TFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL-V 444 (713)
Q Consensus 379 g~~~~~~~TEEdLre~FsqFG~VedVr-------------Ip~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~-V 444 (713)
||+.. ....|-++|++||.|.+.. ++. ...+--|+|.++.+|.+||.+ ||..|.|..+- |
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 77643 4678889999999998885 443 677999999999999999999 99999997554 5
Q ss_pred EeC
Q 005121 445 KPY 447 (713)
Q Consensus 445 k~A 447 (713)
++.
T Consensus 87 ~~~ 89 (100)
T PF05172_consen 87 KPC 89 (100)
T ss_dssp EE-
T ss_pred EEc
Confidence 665
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.82 E-value=0.021 Score=65.32 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 389 EdLre~FsqFG~VedVrIp~D-------rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
|+|+.-+++||.|..|.|+++ -.-|--||+|.+.+++++|++.|+|..+.||.|....|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566667889999999999874 3456779999999999999999999999999999988743
No 100
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.51 E-value=0.013 Score=50.97 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005121 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (713)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (713)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999988 46678888887765 5667777777543
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.35 E-value=0.014 Score=66.83 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
-.-.+|||+++ ...+++..+++....||++...+++.| .++||+|.+|.++.....|++.+|+..+.++++.|..
T Consensus 287 ~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44568999988 467899999999999999999999886 7899999999999999999999999999999999988
Q ss_pred CccCC
Q 005121 447 YKEKG 451 (713)
Q Consensus 447 Ak~K~ 451 (713)
|..-.
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 86544
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.30 E-value=0.051 Score=59.45 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=66.2
Q ss_pred CCCCCCcceEEEcCCC---CCCCC-------HHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCce
Q 005121 367 GIVNPASRQIYLTFPA---DSTFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (713)
Q Consensus 367 gs~~~~sRtIYVg~~~---~~~~T-------EEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~ 436 (713)
++-.+..+|+.|.++- .+..+ +++|++-=++||.|.+|.|--....|.+-|+|.+.+.|..+++.|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3455677888887542 22333 3556666789999999966433678999999999999999999999999
Q ss_pred ecCeEEEEEeCccCC
Q 005121 437 VCDARVLVKPYKEKG 451 (713)
Q Consensus 437 I~GR~I~Vk~Ak~K~ 451 (713)
++||.|....+-.+.
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999998775553
No 103
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.12 E-value=0.023 Score=48.58 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=37.3
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005121 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (713)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (713)
.-+|.+|++++|+.|.||-|+||= .+..|++.|=-.+ .+|..-|..|-.-
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~v 60 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEV 60 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 357999999999999999999884 5557888875544 4555556655443
No 104
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.03 E-value=0.033 Score=51.42 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=34.0
Q ss_pred EEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 005121 377 YLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (713)
Q Consensus 377 YVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~ln 433 (713)
.|..+ ...++.++|++.|++||.|..|.+.. .---|||.|.+++.|++|++.+.
T Consensus 5 ~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 5 KFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 34433 34567999999999999999998876 34489999999999999998854
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.99 E-value=0.014 Score=65.13 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhCC
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~------D-----------rsRGFGFVTF~~~E~A~kALe~ln 433 (713)
-.+|+|.+.+++..... +.|.++|+.+|.|..|||.. | .-+-+|+|+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~-enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSY-ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHH-HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46899999988765444 89999999999999999954 2 235689999999999999999975
Q ss_pred Cc
Q 005121 434 PH 435 (713)
Q Consensus 434 g~ 435 (713)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 106
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.89 E-value=0.015 Score=38.40 Aligned_cols=19 Identities=42% Similarity=1.085 Sum_probs=16.9
Q ss_pred cccccccccCCCCCCCcccCC
Q 005121 233 PCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 233 pC~YFarG~CK~GssCrF~Hg 253 (713)
+|.||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999993
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.79 E-value=0.037 Score=64.83 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEe---eccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~Ved-VrI---p~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
.+..-|||..+ .+.+++.++-++|..--.|++ |.| ++|+.++-|||.|.+++.+.+|+.--..+++..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45568999876 577889999999999888888 665 4469999999999998888888877689999999999987
Q ss_pred CccCCC
Q 005121 447 YKEKGK 452 (713)
Q Consensus 447 Ak~K~k 452 (713)
..++..
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 766643
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.75 E-value=0.17 Score=56.14 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=68.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCccC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~K 450 (713)
..--+.|-.+...+++-+.|-++|..||.|++|+.++- +-|-|.|+..+...+++|+.-||+..+-|.+|.|+..+..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 34456666788889999999999999999999999873 6789999999999999999999999999999999987543
No 109
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.66 E-value=0.038 Score=60.50 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEE--------Eeecc----CCCceEEEEECCHHHHHHHHHhCCCce
Q 005121 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHF 436 (713)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedV--------rIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~ 436 (713)
-...+-+|||-.+.+ .+++.+|.++|.++|.|..= .|-+| +.||=|-|+|.++..|+.|++..++..
T Consensus 62 ~~s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred cccccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 367778999986654 68999999999999988542 23333 889999999999999999999999999
Q ss_pred ecCeEEEEEeCccCCC
Q 005121 437 VCDARVLVKPYKEKGK 452 (713)
Q Consensus 437 I~GR~I~Vk~Ak~K~k 452 (713)
++|..|+|..+..+..
T Consensus 141 f~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTG 156 (351)
T ss_pred ccCCCchhhhhhhccC
Confidence 9999999998887764
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.038 Score=63.51 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecC-eEEEEE
Q 005121 389 EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD-ARVLVK 445 (713)
Q Consensus 389 EdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~G-R~I~Vk 445 (713)
.-|.++|+++|+|..+.+|-+ ..+||.|++|.+...|+.|++.+||+.|+- ....|.
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 456688999999999999976 889999999999999999999999988864 344443
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.29 E-value=0.15 Score=50.04 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCcceEEEcCCC-----CCCCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEE
Q 005121 371 PASRQIYLTFPA-----DSTFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (713)
Q Consensus 371 ~~sRtIYVg~~~-----~~~~TE---EdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I 442 (713)
+-.-||.|.-.. ...+.+ .+|-+.|.+||+|.=||++- +-=+|||.+-+.|-+|+.. ++..|+|+.|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~l 99 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRTL 99 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEEE
Confidence 555677775222 113333 36667899999999999986 5689999999999999997 9999999999
Q ss_pred EEEeCcc
Q 005121 443 LVKPYKE 449 (713)
Q Consensus 443 ~Vk~Ak~ 449 (713)
+|+.-.+
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9986443
No 112
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=93.85 E-value=0.023 Score=63.13 Aligned_cols=25 Identities=44% Similarity=1.124 Sum_probs=23.8
Q ss_pred CCccccccccccCCCCCCCcccCCC
Q 005121 230 GWRPCLYFARGYCKNGSSCRFVHGG 254 (713)
Q Consensus 230 g~kpC~YFarG~CK~GssCrF~Hg~ 254 (713)
..|||.||-.|-|+.|.+|||.||.
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 5899999999999999999999995
No 113
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.76 E-value=0.031 Score=60.00 Aligned_cols=28 Identities=43% Similarity=0.931 Sum_probs=25.3
Q ss_pred CCCCCcccccccc-ccCCCCCCCcccCCC
Q 005121 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGG 254 (713)
Q Consensus 227 ~~~g~kpC~YFar-G~CK~GssCrF~Hg~ 254 (713)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4578899999999 999999999999984
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.26 Score=56.37 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=58.1
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-------cCCCc---eEEEEECCHHHHHHHHHhCCCceec
Q 005121 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRM---FGFVTFVYPETVKIILAKGNPHFVC 438 (713)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~-------DrsRG---FGFVTF~~~E~A~kALe~lng~~I~ 438 (713)
..+-+|+||||++ +|+++|+.|...|..||.|. |..+. -..+| |.|+.|.++..|.+.+.. ...+
T Consensus 255 ~~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEG 329 (520)
T ss_pred ccccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhc
Confidence 3467899999988 79999999999999999963 45552 15677 999999999999988765 3335
Q ss_pred CeEEEEEeCccC
Q 005121 439 DARVLVKPYKEK 450 (713)
Q Consensus 439 GR~I~Vk~Ak~K 450 (713)
..+...+...++
T Consensus 330 ~~~~yf~vss~~ 341 (520)
T KOG0129|consen 330 EGNYYFKVSSPT 341 (520)
T ss_pred ccceEEEEecCc
Confidence 555555544443
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.01 E-value=0.043 Score=57.93 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred HHHHHHhh-cCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 389 EdLre~Fs-qFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
|||-..|+ +||+|+++.|-.+ .-+|=.||.|...|+|++|++.||+..+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 9999999987653 77899999999999999999999999999999988754
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.86 E-value=0.29 Score=56.06 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC
Q 005121 358 NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG 432 (713)
Q Consensus 358 sDF~~~g~~gs~~~~sRtIYVg~~~~~~~TEEdLre~Fs-qFG~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~l 432 (713)
+||+.. .....--.||||||.++ --+|.++|..+|+ .||-|.-|-|=+| -.||-|=|||.+...--+||+.
T Consensus 357 s~fv~d--~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa- 432 (520)
T KOG0129|consen 357 SDFVLD--HNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA- 432 (520)
T ss_pred chhhhc--cCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-
Confidence 445544 22344567999999874 5689999999999 7999999999776 6799999999999999999986
Q ss_pred CCcee----cCeEEEEEeCc
Q 005121 433 NPHFV----CDARVLVKPYK 448 (713)
Q Consensus 433 ng~~I----~GR~I~Vk~Ak 448 (713)
.-..| -.++|.||+|.
T Consensus 433 rFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 433 RFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred heEEEeccccceeeeeccee
Confidence 32222 23578888776
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.73 E-value=0.09 Score=57.67 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=59.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG--~VedVrIp~D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
-+|||++ -|.+|++||-+....-| .|.++++... ++||||.|...+...+++.++.|...+|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 5799988 57778888888777766 4445544432 999999999999999999999999999999988886654
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.18 E-value=0.083 Score=55.93 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCcee
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-------FGFVTFVYPETVKIILAKGNPHFV 437 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~-D--------rsRG-------FGFVTF~~~E~A~kALe~lng~~I 437 (713)
--||+.+|+. .+....||++|++||+|-+|.+-. + +.+| =|+|+|.+...|+++.+.||+..|
T Consensus 75 GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699999866 488999999999999999999853 2 1111 389999999999999999999999
Q ss_pred cCeE
Q 005121 438 CDAR 441 (713)
Q Consensus 438 ~GR~ 441 (713)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9973
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.92 E-value=0.33 Score=52.45 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCcc
Q 005121 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (713)
Q Consensus 388 EEdLre~FsqFG~VedVrIp~D-----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak~ 449 (713)
|+++++--++||.|..|-|..+ .-----||+|...+.|-+|+-.||+.+|.||.|...+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5677788899999999977542 1111379999999999999999999999999999988753
No 120
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.79 E-value=0.58 Score=48.76 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=62.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceec-CeEEEEEeCc
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~-GR~I~Vk~Ak 448 (713)
.+.+..+++++++ ..++.+.+..+|.+|.--.+||++.. .++.|||+|.+...+..|...+.+-.|- .-.+.|..++
T Consensus 143 ~ppn~ilf~~niP-~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIP-SESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCC-cchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4667888888875 46788999999999999999998753 5789999999999999998887776664 6666666553
No 121
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=90.13 E-value=0.33 Score=50.84 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCce
Q 005121 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (713)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~ 436 (713)
+..++-.|+||.++ .-++||++|+.+|+.|--...++|-....-..+||.|.+.+.|..|+..|.+-.
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 44566679999977 568999999999999987777777431122278888888888888877655443
No 122
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.61 E-value=0.42 Score=51.33 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=27.6
Q ss_pred cceEEEcCCC-CC----------CCCHHHHHHHhhcCCCeeEEEeec
Q 005121 373 SRQIYLTFPA-DS----------TFREEDVSNYFSIYGPVQDVRIPY 408 (713)
Q Consensus 373 sRtIYVg~~~-~~----------~~TEEdLre~FsqFG~VedVrIp~ 408 (713)
..|||+..++ -| --+|+.|+..|..||+|..|.||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4588886553 22 146889999999999999999964
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.23 E-value=1.8 Score=39.27 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=42.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~ln 433 (713)
...-.||+||.+| ...||.++|+.||.|. |..+- -.-|||...+.+.|+.++..++
T Consensus 8 RdHVFhltFPkeW--K~~DI~qlFspfG~I~-VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEW--KTSDIYQLFSPFGQIY-VSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT----HHHHHHHCCCCCCEE-EEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHh--hhhhHHHHhccCCcEE-EEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 3456889999988 4689999999999975 44443 3679999999999999988865
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=86.30 E-value=2 Score=51.07 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCe-eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~V-edVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
|-|-+.+ -.++++-+||-++|..|-.+ .+|+|-+. ..-|=+-|.|.++++|.+|...++++.|..|+|++..
T Consensus 868 ~V~~~~n-~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNN-FPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecC-CCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4444443 46899999999999999766 45666553 7788999999999999999999999999999998863
No 125
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.88 E-value=1.5 Score=47.81 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=50.7
Q ss_pred CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeE-EEEEeCccC
Q 005121 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEK 450 (713)
Q Consensus 387 TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~-I~Vk~Ak~K 450 (713)
.-.-|-..|++||+|.++.... .-.|=+|.|...-+|++||.+ |+..|+|.. |-|++...|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 3567889999999999987763 566999999999999999999 999999875 456765554
No 126
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.03 E-value=0.34 Score=53.55 Aligned_cols=22 Identities=41% Similarity=1.020 Sum_probs=21.4
Q ss_pred ccccccccccCCCCCCCcccCC
Q 005121 232 RPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 232 kpC~YFarG~CK~GssCrF~Hg 253 (713)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 8999999999999999999996
No 127
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=84.95 E-value=4.3 Score=45.52 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=61.7
Q ss_pred cceEEEc-CCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCc-eEEEEECCHHHHHHHHHhCCCceecCe--EEEEEeCc
Q 005121 373 SRQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRM-FGFVTFVYPETVKIILAKGNPHFVCDA--RVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg-~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRG-FGFVTF~~~E~A~kALe~lng~~I~GR--~I~Vk~Ak 448 (713)
++-|.++ .++.+-+|-+-|..+-...|+|.+|-|.+ +.| -|.|+|++.+.|++|.+.||+..|.-- .++|..|+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 3444444 44567899999999999999999999987 344 699999999999999999999988654 56677776
Q ss_pred cCC
Q 005121 449 EKG 451 (713)
Q Consensus 449 ~K~ 451 (713)
+.+
T Consensus 198 P~r 200 (494)
T KOG1456|consen 198 PTR 200 (494)
T ss_pred cce
Confidence 654
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=83.93 E-value=1.7 Score=48.79 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---c----CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~---D----rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
-|-|++|. -.+|.++++.+|+-.|+|.+++|.- | ...--+||.|.+...|..|-.. ..+.+-++.+.|.+|
T Consensus 9 vIqvanis-psat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANIS-PSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccC-chhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 78889874 5689999999999999999999853 2 3344899999999999888765 566777788888887
Q ss_pred ccCC
Q 005121 448 KEKG 451 (713)
Q Consensus 448 k~K~ 451 (713)
-.-.
T Consensus 87 ~~~~ 90 (479)
T KOG4676|consen 87 GDEV 90 (479)
T ss_pred CCCC
Confidence 6543
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.78 E-value=0.43 Score=52.27 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHH--HHhhcCCCeeEEEeeccC----C---CceEEEEECCHHHHHHHHHhCCCceecCeE
Q 005121 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ----K---RMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLr--e~FsqFG~VedVrIp~Dr----s---RGFGFVTF~~~E~A~kALe~lng~~I~GR~ 441 (713)
..++-.||-.+..--..|..|+ +||++||.|..|.+-.+. + --=++|||...|+|..+|...++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3455667765554446677776 789999999999887642 1 113899999999999999999999999998
Q ss_pred EEEEeCccC
Q 005121 442 VLVKPYKEK 450 (713)
Q Consensus 442 I~Vk~Ak~K 450 (713)
++......+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 766655444
No 130
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=83.47 E-value=2.9 Score=47.25 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=64.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCe-EEEEEeCc
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR-~I~Vk~Ak 448 (713)
+.+.||-+.++ +-.++||+|++.|.+-|-+.+......+.|-++.+.+.+.|+|-.|+-.|+.|.+.+. -++|.+.+
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 44556666666 4579999999999999998888776667788999999999999999999999999776 78887764
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.00 E-value=3.6 Score=41.91 Aligned_cols=62 Identities=16% Similarity=0.025 Sum_probs=47.5
Q ss_pred CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceecCeEEEEEeCccC
Q 005121 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKEK 450 (713)
Q Consensus 387 TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~ln--g~~I~GR~I~Vk~Ak~K 450 (713)
..+.|+++|..|+.+....+.. +-+=-.|.|.+.+.|.+|...++ +..+.|..++|.++..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4589999999999999998876 55558999999999999999999 89999999999887433
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.05 E-value=0.2 Score=60.10 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEee----ccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP----YQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp----~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
+..-++||.++ +..+.+++|+..|+.+|.|+.|+|. .++-||+|||.|.+++++.+|+...+.+.+.-..+-|
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 44557888866 6788999999999999999999886 2388999999999999999999986666655333333
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=80.92 E-value=6.7 Score=33.57 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcC---CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqF---G~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~l 432 (713)
..|+|.++. +++.+||+.||..| .....|..+-|. -+=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 468888764 47889999999999 235688888763 3678999999999999764
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=79.38 E-value=6.3 Score=39.18 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHH---HHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 370 NPASRQIYLTFPADSTFREEDVS---NYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLr---e~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
++--.||+|+-+.----..||++ ...+.||+|++|.+. .|--|.|+|.+...|=+|+.+... ..-|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34556899974432223345555 447789999999886 466899999999999999988544 55666677765
Q ss_pred C
Q 005121 447 Y 447 (713)
Q Consensus 447 A 447 (713)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 3
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=75.38 E-value=5.9 Score=44.58 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=55.7
Q ss_pred CCcceEEEc-CCCCCCCCHHHHHHHhhc----CCCeeEEEeec--c-CCCceEEEEECCHHHHHHHHHhCCCceecCeEE
Q 005121 371 PASRQIYLT-FPADSTFREEDVSNYFSI----YGPVQDVRIPY--Q-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (713)
Q Consensus 371 ~~sRtIYVg-~~~~~~~TEEdLre~Fsq----FG~VedVrIp~--D-rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I 442 (713)
+...++.|+ .-..|+.++.||.++|.+ -|-++.|-.++ | |.-|=|||.|..+++|++||.+ +...|.-|-|
T Consensus 157 sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 157 SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 333455553 334799999999999973 23555665544 3 8889999999999999999998 7777777666
Q ss_pred EEEeC
Q 005121 443 LVKPY 447 (713)
Q Consensus 443 ~Vk~A 447 (713)
.+.+.
T Consensus 236 ElFRS 240 (508)
T KOG1365|consen 236 ELFRS 240 (508)
T ss_pred HHHHH
Confidence 66433
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.83 E-value=1.7 Score=52.65 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=63.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeCc
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~Ak 448 (713)
+..++|.++ ++..|.+.++.+++.+|.|.+++++.- +.+|.+||.|.++.++.+++..++...+.-+.+.|....
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 456677655 688999999999999999999998763 889999999999999999999988887777777776543
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.63 E-value=12 Score=32.25 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 384 STFREEDVSNYFSIYG-----PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 384 ~~~TEEdLre~FsqFG-----~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
-.++..+|-.++..-+ .|-+|+|. ..|.||+-... .|+.+++.|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3568888988888875 45566664 46999987554 689999999999999999999875
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.17 E-value=1.1 Score=54.41 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
..++||++++++ +.++++.+++..|..+|.|++|.|-.- +---||||.|.+-..+-.|+-.+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 477899999987 678999999999999999999998542 2234999999999999999888777766555555544
Q ss_pred C
Q 005121 447 Y 447 (713)
Q Consensus 447 A 447 (713)
-
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=69.89 E-value=5.3 Score=48.93 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=66.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecC--eEEEEEeC
Q 005121 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPY 447 (713)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~G--R~I~Vk~A 447 (713)
..-++.++|+.+..| +.-..|...|..||.|..|.+-. -.-|++|.|.+...+..|+..|.+.-|.| +++.|.++
T Consensus 452 st~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 345678899988887 56788899999999999977643 55699999999999999999998888866 66888888
Q ss_pred ccCCCCc
Q 005121 448 KEKGKVP 454 (713)
Q Consensus 448 k~K~k~~ 454 (713)
.+-...+
T Consensus 529 ~~~~~~P 535 (975)
T KOG0112|consen 529 SPPGATP 535 (975)
T ss_pred cCCCCCh
Confidence 7655433
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=69.66 E-value=3.4 Score=46.85 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceecCeEEEEEeCccCCC
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng-~~I~GR~I~Vk~Ak~K~k 452 (713)
..+|++|+. -.++..||+.+|..--.--.=.++ -..||+||.+.+..-+.+|++.+++ ..+.|+++.|....+|+.
T Consensus 2 nklyignL~-p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLS-PQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccC-CCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999884 468999999999864111111111 2579999999999999999999875 678999999988877653
No 141
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=69.32 E-value=4.4 Score=43.43 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=59.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCC----CceecCeEEEEEe
Q 005121 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (713)
Q Consensus 374 RtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~ln----g~~I~GR~I~Vk~ 446 (713)
..|||.++..+ ++-+.+++-|+.||+|+..-++-| +.-+=++|.|...-.+.+|+...+ +...+++.+.|.+
T Consensus 32 a~l~V~nl~~~-~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQG-ASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchh-hhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999988654 778888999999999998877655 777889999999999999998763 3455777777755
Q ss_pred Cc
Q 005121 447 YK 448 (713)
Q Consensus 447 Ak 448 (713)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 142
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=69.01 E-value=13 Score=38.37 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=52.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCcee--cCeEEEEEeC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPY 447 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I--~GR~I~Vk~A 447 (713)
.+.|..++. .-+=+||+++..+-|.|.-..+.+ -|.|.|.|...|+.+-|+.+|+.+.+ .|-...+...
T Consensus 117 RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 117 RVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eEEEecCCC-CCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 445554433 345699999999999999888876 48999999999999999999876555 4444444443
No 143
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=66.52 E-value=2.9 Score=45.35 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.7
Q ss_pred Ccccccc-ccccCCCCCCCcccCCC
Q 005121 231 WRPCLYF-ARGYCKNGSSCRFVHGG 254 (713)
Q Consensus 231 ~kpC~YF-arG~CK~GssCrF~Hg~ 254 (713)
.-||.|| .+|.|+.|..|.|.|.+
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 4589999 99999999999999984
No 144
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=66.34 E-value=2 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.840 Sum_probs=20.9
Q ss_pred CccccccccccCCCCCC-CcccCC
Q 005121 231 WRPCLYFARGYCKNGSS-CRFVHG 253 (713)
Q Consensus 231 ~kpC~YFarG~CK~Gss-CrF~Hg 253 (713)
.-.|+=|.||.|++|.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 45899999999999988 999994
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=65.56 E-value=6.1 Score=44.49 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=57.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCe-eE--EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEeC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIYGPV-QD--VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqFG~V-ed--VrIp~D---rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~A 447 (713)
-|-++.+ .|..+.|||-.+|..|-.- .- |.++.+ +.-|=|||.|.+.|.|..|..+-+++....|-|.|...
T Consensus 282 cvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 282 CVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4555555 6889999999999998643 22 666654 88899999999999999999987778878888888765
No 146
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=63.96 E-value=2.6 Score=45.86 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCcccCC
Q 005121 232 RPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 232 kpC~YFarG~CK~GssCrF~Hg 253 (713)
-.|-||-.|.|..|.-|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 4699999999999999999997
No 147
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=62.20 E-value=33 Score=32.30 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=49.5
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceecC
Q 005121 375 QIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (713)
Q Consensus 375 tIYVg~~~~~~~TEEdLre~FsqF-G~VedVrIp~D--rsRGFGFVTF~~~E~A~kALe~lng~~I~G 439 (713)
++-|-..+.+-++-++|..+.+.+ ..|+.+||++| ..|=...++|.+.+.|+.-.+..||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 333334456667778887777666 46778899998 566678899999999999999988877654
No 148
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=58.39 E-value=12 Score=44.24 Aligned_cols=81 Identities=7% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCcee---cCeE
Q 005121 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (713)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEEdLre~Fs-qFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I---~GR~ 441 (713)
.++-...+.-|||.++. --||.-+|+++.. ..|.|++..| |+-|--+||+|.+.++|......|++... +++.
T Consensus 437 SPsR~~~SnvlhI~nLv-RPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLV-RPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeeccc-ccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 45667788899998764 3589999999999 5778888732 44556699999999999999999988665 6677
Q ss_pred EEEEeCcc
Q 005121 442 VLVKPYKE 449 (713)
Q Consensus 442 I~Vk~Ak~ 449 (713)
|.|.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77766643
No 149
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=56.32 E-value=4.7 Score=42.37 Aligned_cols=21 Identities=52% Similarity=1.130 Sum_probs=18.3
Q ss_pred cccc-cccccCCCCCCCcccCC
Q 005121 233 PCLY-FARGYCKNGSSCRFVHG 253 (713)
Q Consensus 233 pC~Y-FarG~CK~GssCrF~Hg 253 (713)
-|+| -+.|.|-+|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 4855 67999999999999996
No 150
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=55.95 E-value=7 Score=43.19 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=23.9
Q ss_pred CCCCccccccccccCCCCCCCcccCC
Q 005121 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 228 ~~g~kpC~YFarG~CK~GssCrF~Hg 253 (713)
..+-..|.||-+|-||+|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 56788999999999999999999994
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=52.27 E-value=8.1 Score=41.78 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=62.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec--c--CCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY--Q--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~--D--rsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
....++|++.. .|++.+.+...+|.++|.+.++.+.. + .++||+.|.|...+.+..+++..-.+.+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 45678888865 56677777889999999988887755 2 8999999999999999999998544677777776665
Q ss_pred CccCC
Q 005121 447 YKEKG 451 (713)
Q Consensus 447 Ak~K~ 451 (713)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 55544
No 152
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=52.26 E-value=7.9 Score=27.22 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=15.8
Q ss_pred cccccccc-cCCCCCCCcccC
Q 005121 233 PCLYFARG-YCKNGSSCRFVH 252 (713)
Q Consensus 233 pC~YFarG-~CK~GssCrF~H 252 (713)
-|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 48998888 8865 5899999
No 153
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=51.89 E-value=7.3 Score=45.36 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=22.7
Q ss_pred CCCccccccccccCCCCCCCcccCC
Q 005121 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 229 ~g~kpC~YFarG~CK~GssCrF~Hg 253 (713)
...-||-=|-||-|++|-+|.|.||
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 3567999999999999999999999
No 154
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=47.51 E-value=7.5 Score=40.40 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=21.6
Q ss_pred CCCccc-cccccccCCCCCCCcccCC
Q 005121 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrF~Hg 253 (713)
+-.-.| .|=..|||-.|-+|+|+|-
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhh
Confidence 345578 8899999999999999996
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=46.47 E-value=7.7 Score=42.89 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=24.1
Q ss_pred CCCCccccccccccCCCCCCCcccCCC
Q 005121 228 GLGWRPCLYFARGYCKNGSSCRFVHGG 254 (713)
Q Consensus 228 ~~g~kpC~YFarG~CK~GssCrF~Hg~ 254 (713)
.-.-|-|.+|.+|||.+|.+|++.|.-
T Consensus 131 qt~~k~c~~~~~g~c~~g~~c~~~h~~ 157 (325)
T KOG1040|consen 131 QTAIKKCKWYKEGFCRGGPSCKKRHER 157 (325)
T ss_pred hhhhhccchhhhccCCCcchhhhhhhc
Confidence 346889999999999999999999973
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=46.27 E-value=29 Score=41.01 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=52.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceecCeEEEE
Q 005121 371 PASRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLV 444 (713)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEEdLre~Fsq--FG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~ln--g~~I~GR~I~V 444 (713)
..+|.|.|-.=+.-++.+|+|+.+|.- +=++.+|..-. .-=-||||.+..+|+.|++.|. -.+|.|+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---N~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 356777775444567889999999985 66888887764 2347999999999999987763 35667766643
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=43.36 E-value=21 Score=36.01 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=44.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHhhc-CCCe---eEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceecCe
Q 005121 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (713)
Q Consensus 372 ~sRtIYVg~~~~~~~TEEdLre~Fsq-FG~V---edVrIp~D------rsRGFGFVTF~~~E~A~kALe~lng~~I~GR 440 (713)
...+|.|++++ .+.||+++.+..+. ++.- ..+.-..+ ..-.-|||.|.+.+++..-...++++.+.+.
T Consensus 6 ~~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 45689999885 57999999997776 6665 33331111 1123499999999999999999999877543
No 158
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=33.25 E-value=21 Score=38.57 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.7
Q ss_pred CCCCCccc-cccccccCCC-CCCCcccCC
Q 005121 227 SGLGWRPC-LYFARGYCKN-GSSCRFVHG 253 (713)
Q Consensus 227 ~~~g~kpC-~YFarG~CK~-GssCrF~Hg 253 (713)
.-+.-..| .|.-.|.||. |.+|||-||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 35678899 5677899999 999999887
No 159
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=32.55 E-value=2.8e+02 Score=24.07 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEE
Q 005121 382 ADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (713)
Q Consensus 382 ~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~V 444 (713)
+--.++-++++..+..|+- .+|+. | ..|| ||.|.+.++|++.....++..+.+.++.+
T Consensus 8 p~~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 8 PVHGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3456788999999999975 44443 2 3565 89999999999999998998888877664
No 160
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=31.77 E-value=23 Score=38.61 Aligned_cols=24 Identities=46% Similarity=1.004 Sum_probs=22.5
Q ss_pred CCccccccccccCCCCCCCcccCC
Q 005121 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 230 g~kpC~YFarG~CK~GssCrF~Hg 253 (713)
.--+|++|-+|-|+.|-.|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 456999999999999999999998
No 161
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=29.08 E-value=12 Score=39.62 Aligned_cols=52 Identities=37% Similarity=0.505 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCC
Q 005121 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP 434 (713)
Q Consensus 383 ~~~~TEEdLre~FsqFG~VedVrIp~D---rsRGFGFVTF~~~E~A~kALe~lng 434 (713)
+-.++++.+.+.|++-|+|+.+|+.++ +.|.|+||++.....+-.++..-.+
T Consensus 93 d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 93 DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 456899999999999999999999986 7899999999888777777766333
No 162
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.62 E-value=76 Score=27.44 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCeeEEEe
Q 005121 389 EDVSNYFSIYGPVQDVRI 406 (713)
Q Consensus 389 EdLre~FsqFG~VedVrI 406 (713)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999998887
No 163
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=27.35 E-value=30 Score=41.50 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=57.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceecCeEEEEEe
Q 005121 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (713)
Q Consensus 373 sRtIYVg~~~~~~~TEEdLre~FsqFG~VedVrIp~DrsRGFGFVTF~~~E~A~kALe~lng~~I~GR~I~Vk~ 446 (713)
.-++||+++ .+.+..+-++.+...+|-|-.+.... |||..|....-...|+..+....++|..+.++.
T Consensus 40 ~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345666655 56788888899999999999987764 999999999999999999999999999888765
No 164
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=26.92 E-value=23 Score=37.87 Aligned_cols=22 Identities=36% Similarity=0.963 Sum_probs=20.5
Q ss_pred ccccccccccCCCCCCCcccCC
Q 005121 232 RPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 232 kpC~YFarG~CK~GssCrF~Hg 253 (713)
-.|-.|..+.|..|..|.|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 4699999999999999999998
No 165
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=23.95 E-value=37 Score=39.75 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.2
Q ss_pred cc-cccccccCCCCCCCcccCCCCCC
Q 005121 233 PC-LYFARGYCKNGSSCRFVHGGETG 257 (713)
Q Consensus 233 pC-~YFarG~CK~GssCrF~Hg~~~~ 257 (713)
-| +|-++|+|..|-+|||+-+++..
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~ 141 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDI 141 (614)
T ss_pred ccceeeccccCCccceeehhhcccCc
Confidence 46 88899999999999999876543
No 166
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=27 Score=38.36 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=22.2
Q ss_pred CCCccc-cccccccCCCCCCCcccCC
Q 005121 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 229 ~g~kpC-~YFarG~CK~GssCrF~Hg 253 (713)
+.--.| .|=-.|||-.|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 456689 8999999999999999995
No 167
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=22.95 E-value=31 Score=36.44 Aligned_cols=23 Identities=43% Similarity=0.899 Sum_probs=19.0
Q ss_pred ccccccccccCCCCCCCcccCCCC
Q 005121 232 RPCLYFARGYCKNGSSCRFVHGGE 255 (713)
Q Consensus 232 kpC~YFarG~CK~GssCrF~Hg~~ 255 (713)
--|+||--|-|.|- +|||+|=++
T Consensus 262 pacryfllgkcnnp-ncryvhihy 284 (377)
T KOG1492|consen 262 PACRYFLLGKCNNP-NCRYVHIHY 284 (377)
T ss_pred chhhhhhhccCCCC-CceEEEEee
Confidence 35999999999775 899999644
No 168
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=20.00 E-value=48 Score=36.82 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=20.1
Q ss_pred CCccccccccccCCCCCCCcccCC
Q 005121 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (713)
Q Consensus 230 g~kpC~YFarG~CK~GssCrF~Hg 253 (713)
-+.=|+=|.||-|.+-+ |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 46678889999999987 999997
Done!