Query 005123
Match_columns 713
No_of_seqs 1065 out of 3189
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0284 Polyadenylation factor 100.0 3.6E-55 7.9E-60 446.0 23.9 375 67-442 20-396 (464)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-45 2.3E-50 373.7 27.3 285 137-424 108-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-43 4E-48 362.2 24.6 283 141-424 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.8E-41 1.7E-45 328.9 35.2 285 137-424 48-343 (343)
5 KOG0279 G protein beta subunit 100.0 7.6E-38 1.6E-42 306.3 33.6 290 134-426 5-313 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 2E-38 4.3E-43 325.3 21.4 247 136-383 209-458 (459)
7 KOG0271 Notchless-like WD40 re 100.0 2.8E-37 6E-42 312.8 24.3 290 89-383 134-479 (480)
8 cd00200 WD40 WD40 domain, foun 100.0 2.2E-35 4.7E-40 303.5 38.1 285 138-424 3-289 (289)
9 KOG0285 Pleiotropic regulator 100.0 1.9E-36 4.1E-41 304.4 27.6 291 136-429 143-442 (460)
10 KOG0295 WD40 repeat-containing 100.0 9.9E-37 2.1E-41 307.7 25.2 288 136-425 100-405 (406)
11 KOG0318 WD40 repeat stress pro 100.0 9.2E-35 2E-39 304.9 38.9 290 136-426 182-602 (603)
12 KOG0273 Beta-transducin family 100.0 1.7E-35 3.7E-40 307.1 31.4 278 144-426 235-523 (524)
13 KOG0645 WD40 repeat protein [G 100.0 5.3E-35 1.2E-39 285.3 32.6 284 136-426 6-311 (312)
14 KOG0263 Transcription initiati 100.0 5.1E-36 1.1E-40 328.9 28.6 246 142-388 376-652 (707)
15 KOG0279 G protein beta subunit 100.0 3.4E-35 7.4E-40 287.7 29.4 292 60-385 10-313 (315)
16 KOG0266 WD40 repeat-containing 100.0 8.3E-35 1.8E-39 325.7 35.0 288 137-426 151-454 (456)
17 KOG0315 G-protein beta subunit 100.0 8.3E-35 1.8E-39 280.5 29.6 273 157-432 11-294 (311)
18 KOG0265 U5 snRNP-specific prot 100.0 6E-35 1.3E-39 288.5 29.1 284 139-425 42-337 (338)
19 KOG0281 Beta-TrCP (transducin 100.0 6.8E-37 1.5E-41 306.2 14.7 275 143-430 196-481 (499)
20 KOG0291 WD40-repeat-containing 100.0 1.2E-33 2.6E-38 306.8 40.3 340 87-430 206-554 (893)
21 KOG0318 WD40 repeat stress pro 100.0 1.2E-33 2.5E-38 296.7 37.9 344 86-431 75-565 (603)
22 KOG0315 G-protein beta subunit 100.0 1.9E-33 4.2E-38 271.1 31.5 264 140-407 36-309 (311)
23 KOG0316 Conserved WD40 repeat- 100.0 6.6E-34 1.4E-38 272.2 26.1 282 138-425 11-298 (307)
24 KOG0296 Angio-associated migra 100.0 2.8E-33 6.1E-38 283.0 31.0 286 137-426 57-398 (399)
25 KOG0286 G-protein beta subunit 100.0 7.9E-33 1.7E-37 272.5 30.2 240 142-383 95-343 (343)
26 PLN00181 protein SPA1-RELATED; 100.0 3.7E-32 8E-37 325.4 42.6 283 139-425 478-792 (793)
27 KOG0293 WD40 repeat-containing 100.0 1.2E-33 2.5E-38 288.8 24.3 289 137-428 217-515 (519)
28 KOG0273 Beta-transducin family 100.0 4.7E-33 1E-37 289.0 29.1 286 141-429 175-485 (524)
29 KOG0295 WD40 repeat-containing 100.0 7.4E-34 1.6E-38 286.9 22.3 247 137-384 143-405 (406)
30 KOG0319 WD40-repeat-containing 100.0 6.9E-33 1.5E-37 301.0 30.4 342 83-427 251-620 (775)
31 KOG0263 Transcription initiati 100.0 2.2E-33 4.7E-38 308.3 26.5 212 133-344 440-651 (707)
32 KOG0291 WD40-repeat-containing 100.0 4E-32 8.7E-37 295.0 34.8 290 138-429 301-615 (893)
33 KOG0276 Vesicle coat complex C 100.0 7.3E-33 1.6E-37 295.1 27.4 290 138-429 7-301 (794)
34 KOG0285 Pleiotropic regulator 100.0 3.7E-33 8E-38 280.8 23.7 252 176-430 141-393 (460)
35 KOG0282 mRNA splicing factor [ 100.0 4.5E-34 9.8E-39 297.8 16.9 290 132-424 202-503 (503)
36 KOG0284 Polyadenylation factor 100.0 5.6E-34 1.2E-38 291.3 14.4 247 138-386 132-381 (464)
37 KOG0281 Beta-TrCP (transducin 100.0 1.7E-33 3.6E-38 281.9 14.2 238 138-388 231-480 (499)
38 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.5E-36 291.4 29.5 290 135-430 364-668 (888)
39 KOG0313 Microtubule binding pr 100.0 2E-31 4.2E-36 270.7 27.8 280 142-426 103-418 (423)
40 KOG0275 Conserved WD40 repeat- 100.0 4.9E-33 1.1E-37 276.1 15.6 286 136-424 205-507 (508)
41 KOG0292 Vesicle coat complex C 100.0 1.1E-31 2.4E-36 295.0 27.4 290 139-430 4-325 (1202)
42 cd00200 WD40 WD40 domain, foun 100.0 3.8E-30 8.2E-35 264.4 35.3 244 139-383 46-289 (289)
43 KOG0278 Serine/threonine kinas 100.0 7E-32 1.5E-36 260.3 19.1 285 139-428 9-299 (334)
44 KOG0266 WD40 repeat-containing 100.0 9.7E-31 2.1E-35 293.0 30.9 249 136-385 195-454 (456)
45 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-29 3.1E-34 253.0 35.2 289 139-430 9-307 (311)
46 KOG0643 Translation initiation 100.0 2.2E-30 4.7E-35 252.4 28.5 287 139-427 5-318 (327)
47 KOG0277 Peroxisomal targeting 100.0 1.1E-30 2.4E-35 252.9 22.5 278 148-425 12-308 (311)
48 KOG0319 WD40-repeat-containing 100.0 4.5E-31 9.8E-36 287.0 21.9 248 138-386 359-620 (775)
49 KOG0640 mRNA cleavage stimulat 100.0 1.5E-30 3.2E-35 257.7 23.1 293 133-426 101-426 (430)
50 KOG1407 WD40 repeat protein [F 100.0 7.4E-30 1.6E-34 248.0 26.6 272 138-414 14-288 (313)
51 KOG0274 Cdc4 and related F-box 100.0 8E-30 1.7E-34 285.9 30.8 281 142-432 206-488 (537)
52 KOG0645 WD40 repeat protein [G 100.0 2.1E-29 4.6E-34 246.1 29.7 239 141-385 58-311 (312)
53 KOG0973 Histone transcription 100.0 4.6E-30 1E-34 290.7 28.6 289 141-429 10-358 (942)
54 KOG0288 WD40 repeat protein Ti 100.0 8.9E-31 1.9E-35 268.3 17.9 282 138-424 169-459 (459)
55 KOG0265 U5 snRNP-specific prot 100.0 2E-29 4.3E-34 249.5 26.5 244 139-384 85-337 (338)
56 KOG0282 mRNA splicing factor [ 100.0 4E-30 8.7E-35 268.4 20.0 246 137-383 251-503 (503)
57 KOG0296 Angio-associated migra 100.0 5.9E-29 1.3E-33 251.7 27.7 247 136-385 98-398 (399)
58 KOG0276 Vesicle coat complex C 100.0 4.7E-29 1E-33 266.2 27.1 242 139-381 50-295 (794)
59 PTZ00421 coronin; Provisional 100.0 5.2E-28 1.1E-32 270.8 37.0 281 146-427 22-332 (493)
60 KOG0292 Vesicle coat complex C 100.0 1.1E-28 2.5E-33 271.4 30.4 246 139-386 46-322 (1202)
61 KOG0293 WD40 repeat-containing 100.0 1.7E-29 3.7E-34 258.4 22.1 250 136-386 261-514 (519)
62 KOG0305 Anaphase promoting com 100.0 9.2E-29 2E-33 268.1 28.6 277 146-428 179-463 (484)
63 KOG0641 WD40 repeat protein [G 100.0 2E-27 4.3E-32 226.2 33.5 287 137-426 25-349 (350)
64 KOG0274 Cdc4 and related F-box 100.0 1.5E-28 3.3E-33 275.6 30.0 267 133-409 238-506 (537)
65 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.4E-33 258.1 26.0 282 142-429 24-312 (487)
66 KOG0268 Sof1-like rRNA process 100.0 6.2E-30 1.3E-34 258.3 15.7 285 138-430 60-349 (433)
67 KOG0300 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 244.3 22.6 291 136-429 140-479 (481)
68 PLN00181 protein SPA1-RELATED; 100.0 2E-27 4.3E-32 284.7 37.1 261 165-429 457-741 (793)
69 KOG0283 WD40 repeat-containing 100.0 1.7E-28 3.8E-33 272.0 25.0 294 130-430 252-580 (712)
70 KOG0278 Serine/threonine kinas 100.0 2.2E-29 4.8E-34 243.0 15.5 246 138-388 53-300 (334)
71 KOG0316 Conserved WD40 repeat- 100.0 3.1E-28 6.8E-33 233.4 22.9 249 178-432 9-263 (307)
72 KOG0289 mRNA splicing factor [ 100.0 9.3E-28 2E-32 247.4 27.3 281 144-425 219-505 (506)
73 KOG0299 U3 snoRNP-associated p 100.0 8E-28 1.7E-32 249.9 26.4 275 138-415 136-443 (479)
74 PTZ00420 coronin; Provisional 100.0 4.6E-27 1E-31 264.5 34.2 263 162-425 50-333 (568)
75 KOG0639 Transducin-like enhanc 100.0 6.8E-28 1.5E-32 251.4 25.1 282 138-425 413-703 (705)
76 KOG0313 Microtubule binding pr 100.0 1E-27 2.2E-32 243.8 25.4 244 138-385 138-418 (423)
77 KOG0277 Peroxisomal targeting 100.0 1.5E-28 3.2E-33 238.1 18.3 242 143-384 59-308 (311)
78 KOG0301 Phospholipase A2-activ 100.0 1.5E-27 3.2E-32 258.1 27.1 283 136-431 6-293 (745)
79 KOG0294 WD40 repeat-containing 100.0 3.1E-27 6.7E-32 235.3 26.5 244 139-388 38-284 (362)
80 KOG2096 WD40 repeat protein [G 100.0 3.8E-27 8.2E-32 234.5 26.0 294 128-424 70-400 (420)
81 KOG0305 Anaphase promoting com 100.0 2.3E-27 5.1E-32 257.3 26.7 240 144-387 217-463 (484)
82 KOG0772 Uncharacterized conser 100.0 3.5E-27 7.7E-32 247.2 25.1 286 137-424 160-485 (641)
83 KOG0310 Conserved WD40 repeat- 100.0 2.1E-27 4.5E-32 248.6 23.1 243 138-384 62-308 (487)
84 KOG0308 Conserved WD40 repeat- 100.0 6.2E-28 1.3E-32 259.2 19.1 277 149-427 29-328 (735)
85 KOG0306 WD40-repeat-containing 100.0 6.4E-27 1.4E-31 254.6 25.7 242 145-387 413-666 (888)
86 KOG0647 mRNA export protein (c 100.0 1.4E-26 2.9E-31 229.6 25.1 268 142-415 25-310 (347)
87 PTZ00421 coronin; Provisional 100.0 8E-26 1.7E-30 253.2 34.1 241 188-429 22-293 (493)
88 KOG1036 Mitotic spindle checkp 99.9 1.3E-25 2.7E-30 223.7 29.2 264 144-415 13-291 (323)
89 KOG0275 Conserved WD40 repeat- 99.9 2.1E-27 4.5E-32 236.2 15.8 242 140-383 259-507 (508)
90 KOG0643 Translation initiation 99.9 2.2E-26 4.9E-31 224.4 21.5 247 138-387 46-319 (327)
91 KOG0294 WD40 repeat-containing 99.9 1.8E-25 4E-30 222.7 27.4 266 158-431 3-286 (362)
92 KOG0973 Histone transcription 99.9 4.8E-26 1E-30 258.3 25.9 249 138-387 63-357 (942)
93 KOG0264 Nucleosome remodeling 99.9 3.7E-26 8.1E-31 237.8 22.6 244 183-426 121-404 (422)
94 KOG0264 Nucleosome remodeling 99.9 7.4E-26 1.6E-30 235.6 23.0 252 134-385 114-404 (422)
95 KOG1408 WD40 repeat protein [F 99.9 9.7E-26 2.1E-30 243.3 24.5 324 85-428 339-715 (1080)
96 KOG0289 mRNA splicing factor [ 99.9 1.8E-25 4E-30 230.5 25.4 248 187-435 220-469 (506)
97 KOG0288 WD40 repeat protein Ti 99.9 2.8E-26 6E-31 235.5 18.7 241 137-382 212-458 (459)
98 KOG0308 Conserved WD40 repeat- 99.9 3.6E-26 7.9E-31 245.6 19.6 318 84-428 39-395 (735)
99 KOG1274 WD40 repeat protein [G 99.9 6.1E-25 1.3E-29 244.6 29.6 265 141-413 10-285 (933)
100 PTZ00420 coronin; Provisional 99.9 2.4E-24 5.2E-29 242.6 34.8 223 204-428 50-295 (568)
101 KOG1407 WD40 repeat protein [F 99.9 1.1E-24 2.3E-29 212.2 26.0 234 139-376 59-293 (313)
102 KOG0641 WD40 repeat protein [G 99.9 9.9E-24 2.1E-28 201.1 31.9 252 132-385 77-349 (350)
103 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-23 2.9E-28 221.0 36.6 271 156-433 1-286 (300)
104 KOG0269 WD40 repeat-containing 99.9 5.7E-26 1.2E-30 248.4 18.8 279 145-425 40-339 (839)
105 KOG1408 WD40 repeat protein [F 99.9 1.4E-25 3E-30 242.1 21.1 247 139-386 454-714 (1080)
106 KOG0650 WD40 repeat nucleolar 99.9 7.9E-25 1.7E-29 233.2 22.3 284 137-424 393-733 (733)
107 KOG1446 Histone H3 (Lys4) meth 99.9 4.2E-23 9.2E-28 206.7 32.5 255 177-435 5-271 (311)
108 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 210.4 20.0 249 139-388 6-289 (299)
109 KOG0299 U3 snoRNP-associated p 99.9 3E-24 6.6E-29 223.4 24.6 255 179-436 135-420 (479)
110 KOG0267 Microtubule severing p 99.9 1.4E-25 3E-30 243.5 14.9 250 158-415 6-255 (825)
111 KOG0300 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 215.3 21.1 263 158-429 126-431 (481)
112 KOG0640 mRNA cleavage stimulat 99.9 9.6E-25 2.1E-29 216.6 19.4 251 179-430 105-387 (430)
113 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 210.4 18.7 250 182-431 7-291 (299)
114 KOG2048 WD40 repeat protein [G 99.9 2.6E-23 5.7E-28 225.1 30.9 280 143-425 24-318 (691)
115 KOG0301 Phospholipase A2-activ 99.9 5.1E-24 1.1E-28 230.8 25.1 237 139-387 52-290 (745)
116 KOG1273 WD40 repeat protein [G 99.9 6.2E-24 1.4E-28 211.4 23.7 281 147-430 26-326 (405)
117 KOG1063 RNA polymerase II elon 99.9 1.4E-23 3E-28 227.3 28.2 366 58-429 184-651 (764)
118 KOG0267 Microtubule severing p 99.9 1.1E-25 2.4E-30 244.4 11.4 236 140-376 24-259 (825)
119 KOG0646 WD40 repeat protein [G 99.9 2E-24 4.4E-29 225.1 20.4 241 144-385 81-350 (476)
120 KOG0772 Uncharacterized conser 99.9 4.3E-24 9.2E-29 224.2 22.2 241 143-384 213-486 (641)
121 KOG1539 WD repeat protein [Gen 99.9 1.5E-22 3.3E-27 223.2 34.2 286 136-424 194-646 (910)
122 KOG0639 Transducin-like enhanc 99.9 1.9E-24 4.1E-29 225.8 18.2 237 144-384 465-703 (705)
123 KOG2055 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 217.5 25.1 281 144-426 213-512 (514)
124 KOG1539 WD repeat protein [Gen 99.9 7E-23 1.5E-27 225.8 31.0 281 147-429 162-609 (910)
125 KOG2106 Uncharacterized conser 99.9 6.8E-22 1.5E-26 207.3 35.7 280 140-427 196-522 (626)
126 KOG0321 WD40 repeat-containing 99.9 2.3E-23 5.1E-28 223.8 24.7 275 156-431 64-396 (720)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.7E-22 2.1E-26 206.8 36.9 256 146-408 32-300 (300)
128 KOG0646 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 214.6 26.0 262 166-430 18-311 (476)
129 KOG0269 WD40 repeat-containing 99.9 2.6E-24 5.7E-29 235.4 14.3 243 146-389 89-344 (839)
130 KOG2445 Nuclear pore complex c 99.9 1.5E-22 3.2E-27 201.4 25.3 244 140-385 9-318 (361)
131 KOG0283 WD40 repeat-containing 99.9 5.8E-23 1.2E-27 228.3 24.4 203 138-343 363-577 (712)
132 KOG4283 Transcription-coupled 99.9 2.2E-22 4.7E-27 198.8 25.2 286 141-431 40-370 (397)
133 KOG2445 Nuclear pore complex c 99.9 2.2E-22 4.8E-27 200.1 25.2 244 182-426 9-318 (361)
134 KOG0268 Sof1-like rRNA process 99.9 1.6E-23 3.4E-28 212.1 13.9 243 178-428 58-304 (433)
135 KOG1274 WD40 repeat protein [G 99.9 7.9E-22 1.7E-26 219.9 28.6 242 183-427 10-263 (933)
136 KOG2106 Uncharacterized conser 99.9 7.4E-21 1.6E-25 199.6 34.0 233 144-384 246-520 (626)
137 KOG0647 mRNA export protein (c 99.9 8.1E-22 1.8E-26 195.8 23.6 233 139-376 67-315 (347)
138 KOG4328 WD40 protein [Function 99.9 7.6E-22 1.6E-26 205.3 24.1 286 137-424 179-493 (498)
139 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-22 5.7E-27 209.7 20.2 263 147-412 37-307 (673)
140 KOG0302 Ribosome Assembly prot 99.9 8.5E-22 1.8E-26 200.5 21.9 242 138-379 145-433 (440)
141 KOG2096 WD40 repeat protein [G 99.9 2.5E-21 5.3E-26 193.2 24.4 281 181-469 81-397 (420)
142 KOG0321 WD40 repeat-containing 99.9 5E-22 1.1E-26 213.6 20.2 250 138-387 94-393 (720)
143 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-19 3.4E-24 194.8 39.3 289 139-429 60-362 (466)
144 KOG4283 Transcription-coupled 99.9 7.9E-22 1.7E-26 194.9 18.7 216 224-440 39-290 (397)
145 KOG2048 WD40 repeat protein [G 99.9 4.3E-20 9.2E-25 200.4 33.7 283 142-429 67-414 (691)
146 KOG1445 Tumor-specific antigen 99.9 8.6E-22 1.9E-26 210.5 20.1 121 139-259 74-201 (1012)
147 KOG1036 Mitotic spindle checkp 99.9 8.9E-21 1.9E-25 189.2 26.0 239 186-431 13-267 (323)
148 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.8E-25 188.5 25.3 275 143-419 48-361 (406)
149 KOG0270 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 198.0 23.6 279 149-430 130-453 (463)
150 KOG1009 Chromatin assembly com 99.9 6.7E-21 1.5E-25 195.9 23.5 288 143-431 12-377 (434)
151 KOG0302 Ribosome Assembly prot 99.9 5.3E-21 1.1E-25 194.8 21.5 241 182-423 147-436 (440)
152 KOG0307 Vesicle coat complex C 99.9 6E-22 1.3E-26 226.0 16.0 280 148-429 10-330 (1049)
153 KOG0270 WD40 repeat-containing 99.9 2.1E-21 4.7E-26 201.5 18.4 243 148-390 177-454 (463)
154 KOG0307 Vesicle coat complex C 99.9 4.7E-22 1E-26 226.8 14.3 245 144-388 64-330 (1049)
155 KOG1063 RNA polymerase II elon 99.9 3.5E-20 7.7E-25 201.1 27.2 287 142-429 314-702 (764)
156 KOG4378 Nuclear protein COP1 [ 99.9 5.6E-21 1.2E-25 199.9 20.3 267 161-430 7-284 (673)
157 COG2319 FOG: WD40 repeat [Gene 99.9 2.3E-18 4.9E-23 185.7 41.1 288 135-427 146-443 (466)
158 KOG1034 Transcriptional repres 99.9 3.2E-20 7E-25 186.2 21.9 289 134-425 28-382 (385)
159 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 181.3 23.7 238 189-428 26-282 (405)
160 KOG2055 WD40 repeat protein [G 99.9 5.7E-20 1.2E-24 191.5 22.0 245 139-385 252-512 (514)
161 KOG1538 Uncharacterized conser 99.8 6E-20 1.3E-24 197.5 22.1 271 146-427 14-294 (1081)
162 KOG0644 Uncharacterized conser 99.8 6.1E-21 1.3E-25 209.9 11.8 281 138-429 184-471 (1113)
163 KOG4227 WD40 repeat protein [G 99.8 3.4E-19 7.3E-24 181.7 22.4 290 134-426 46-387 (609)
164 KOG4328 WD40 protein [Function 99.8 1.6E-19 3.6E-24 188.0 20.5 257 171-428 171-452 (498)
165 KOG1034 Transcriptional repres 99.8 2.9E-19 6.3E-24 179.4 19.6 241 142-385 87-383 (385)
166 KOG0650 WD40 repeat nucleolar 99.8 4.9E-19 1.1E-23 189.3 20.9 250 178-431 392-685 (733)
167 KOG1188 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 178.3 19.6 269 157-426 41-346 (376)
168 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-19 2.4E-24 193.8 14.7 251 138-390 288-566 (577)
169 KOG0649 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 165.2 23.5 267 145-423 11-313 (325)
170 KOG1963 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 186.9 30.5 288 140-428 201-540 (792)
171 KOG1007 WD repeat protein TSSC 99.8 2.1E-18 4.5E-23 170.5 21.4 260 165-426 39-361 (370)
172 KOG1007 WD repeat protein TSSC 99.8 8.3E-19 1.8E-23 173.3 18.5 247 137-385 56-361 (370)
173 KOG0290 Conserved WD40 repeat- 99.8 5.1E-18 1.1E-22 168.0 23.9 275 146-423 46-362 (364)
174 KOG0322 G-protein beta subunit 99.8 6.9E-19 1.5E-23 172.1 15.6 243 139-384 9-322 (323)
175 KOG1009 Chromatin assembly com 99.8 1E-17 2.3E-22 172.6 23.1 250 137-388 58-375 (434)
176 KOG0303 Actin-binding protein 99.8 3.3E-18 7.2E-23 175.3 19.2 245 181-427 76-338 (472)
177 KOG0303 Actin-binding protein 99.8 9.7E-18 2.1E-22 171.9 22.1 205 223-429 76-297 (472)
178 PRK11028 6-phosphogluconolacto 99.8 1.7E-16 3.7E-21 171.1 33.3 266 160-429 6-307 (330)
179 KOG2110 Uncharacterized conser 99.8 2.7E-16 6E-21 160.6 32.3 237 142-386 3-249 (391)
180 KOG1587 Cytoplasmic dynein int 99.8 4.7E-17 1E-21 181.9 28.8 262 166-427 222-517 (555)
181 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 165.8 22.2 232 143-376 103-361 (406)
182 KOG1517 Guanine nucleotide bin 99.8 2.9E-17 6.3E-22 185.1 25.3 287 141-429 1061-1384(1387)
183 KOG1538 Uncharacterized conser 99.8 1.3E-17 2.8E-22 179.6 21.0 239 137-384 46-292 (1081)
184 KOG0290 Conserved WD40 repeat- 99.8 5.1E-17 1.1E-21 160.9 22.9 239 140-382 92-362 (364)
185 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.9E-22 176.2 19.5 260 142-421 12-281 (737)
186 KOG1523 Actin-related protein 99.8 8.8E-17 1.9E-21 161.4 22.5 232 143-376 9-269 (361)
187 PRK01742 tolB translocation pr 99.8 9.9E-17 2.2E-21 179.0 25.1 235 165-409 183-426 (429)
188 KOG1334 WD40 repeat protein [G 99.8 7.3E-18 1.6E-22 177.0 13.7 289 136-425 134-465 (559)
189 PRK11028 6-phosphogluconolacto 99.7 1.7E-15 3.7E-20 163.3 32.3 239 145-387 35-306 (330)
190 KOG0649 WD40 repeat protein [G 99.7 2.9E-16 6.3E-21 152.1 22.7 231 188-427 12-275 (325)
191 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-17 3.4E-22 177.4 14.5 251 178-431 286-566 (577)
192 PRK01742 tolB translocation pr 99.7 2.4E-16 5.1E-21 176.0 24.0 218 139-364 198-425 (429)
193 KOG2110 Uncharacterized conser 99.7 1E-15 2.2E-20 156.5 25.8 236 186-429 5-251 (391)
194 KOG0771 Prolactin regulatory e 99.7 7E-16 1.5E-20 160.4 23.1 196 232-429 148-357 (398)
195 KOG1445 Tumor-specific antigen 99.7 1.3E-16 2.8E-21 171.2 17.3 257 152-409 587-870 (1012)
196 KOG1188 WD40 repeat protein [G 99.7 2.1E-16 4.5E-21 159.9 16.8 192 241-432 41-248 (376)
197 KOG0322 G-protein beta subunit 99.7 2.7E-16 5.7E-21 154.1 16.9 243 179-425 7-322 (323)
198 KOG2111 Uncharacterized conser 99.7 1.9E-14 4.1E-19 144.8 30.2 236 146-387 7-258 (346)
199 KOG1240 Protein kinase contain 99.7 2.7E-15 5.8E-20 172.1 26.1 250 136-386 1040-1335(1431)
200 KOG0771 Prolactin regulatory e 99.7 2E-16 4.3E-21 164.4 15.4 194 148-342 148-354 (398)
201 KOG1587 Cytoplasmic dynein int 99.7 1.7E-15 3.6E-20 169.5 23.8 243 143-386 241-517 (555)
202 KOG1272 WD40-repeat-containing 99.7 6.1E-17 1.3E-21 169.2 11.0 236 186-428 129-364 (545)
203 KOG1524 WD40 repeat-containing 99.7 4.5E-16 9.8E-21 164.8 17.2 210 156-383 75-284 (737)
204 KOG1272 WD40-repeat-containing 99.7 1.1E-16 2.4E-21 167.2 12.0 263 144-414 129-395 (545)
205 KOG1523 Actin-related protein 99.7 2.9E-15 6.2E-20 150.6 21.5 244 184-428 8-280 (361)
206 KOG1310 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 166.9 13.5 212 136-347 42-308 (758)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 2.1E-15 4.5E-20 160.2 19.9 218 146-364 125-384 (636)
208 KOG0644 Uncharacterized conser 99.7 3.7E-17 7.9E-22 180.4 6.3 241 178-430 182-430 (1113)
209 KOG1963 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 162.2 25.6 293 134-429 241-586 (792)
210 KOG1517 Guanine nucleotide bin 99.7 5.1E-15 1.1E-19 167.3 21.2 240 145-387 1110-1383(1387)
211 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-13 2.7E-18 150.1 31.3 286 147-435 39-356 (369)
212 KOG2321 WD40 repeat protein [G 99.7 2.3E-14 4.9E-19 153.4 24.6 287 142-434 49-351 (703)
213 KOG1240 Protein kinase contain 99.7 1.7E-14 3.7E-19 165.6 25.0 257 175-431 1037-1339(1431)
214 PRK03629 tolB translocation pr 99.6 1.1E-13 2.3E-18 154.5 30.6 235 166-409 179-428 (429)
215 KOG4497 Uncharacterized conser 99.6 1.3E-14 2.8E-19 146.1 20.4 272 149-427 13-392 (447)
216 PRK03629 tolB translocation pr 99.6 5.1E-14 1.1E-18 157.1 27.2 220 139-364 193-427 (429)
217 PRK04922 tolB translocation pr 99.6 6.8E-14 1.5E-18 156.5 28.1 234 166-408 184-432 (433)
218 PRK02889 tolB translocation pr 99.6 4.6E-14 9.9E-19 157.5 26.1 235 166-409 176-425 (427)
219 KOG4227 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 146.8 20.6 249 180-430 50-326 (609)
220 PRK02889 tolB translocation pr 99.6 8E-14 1.7E-18 155.5 26.6 219 140-364 191-424 (427)
221 KOG2139 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 140.2 25.8 240 143-388 97-386 (445)
222 KOG1310 WD40 repeat protein [G 99.6 2.2E-15 4.7E-20 160.0 12.8 217 177-394 41-312 (758)
223 PRK05137 tolB translocation pr 99.6 2.2E-13 4.8E-18 152.5 29.4 234 166-409 182-433 (435)
224 KOG1354 Serine/threonine prote 99.6 4.7E-14 1E-18 142.9 20.7 242 144-388 25-362 (433)
225 KOG3881 Uncharacterized conser 99.6 7.4E-14 1.6E-18 143.9 21.7 262 143-410 54-343 (412)
226 PRK04922 tolB translocation pr 99.6 1.3E-13 2.8E-18 154.3 25.8 220 139-364 198-432 (433)
227 KOG4497 Uncharacterized conser 99.6 2.5E-13 5.5E-18 136.8 23.5 269 145-419 49-425 (447)
228 PRK05137 tolB translocation pr 99.6 3.8E-13 8.3E-18 150.6 27.4 220 138-364 195-432 (435)
229 KOG2394 WD40 protein DMR-N9 [G 99.6 5.5E-14 1.2E-18 149.5 18.9 216 189-407 126-383 (636)
230 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 131.7 26.0 235 188-430 7-260 (346)
231 KOG2139 WD40 repeat protein [G 99.5 6.4E-13 1.4E-17 135.6 21.6 228 186-415 98-362 (445)
232 TIGR02800 propeller_TolB tol-p 99.5 2.6E-12 5.6E-17 143.0 28.5 233 166-407 170-417 (417)
233 KOG0280 Uncharacterized conser 99.5 1.4E-12 3E-17 130.1 22.7 259 165-424 45-331 (339)
234 PRK00178 tolB translocation pr 99.5 5.1E-12 1.1E-16 141.3 30.2 234 167-409 180-428 (430)
235 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.6E-17 134.1 22.2 219 142-364 103-341 (412)
236 KOG2321 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 139.7 21.3 244 185-432 50-308 (703)
237 PF10282 Lactonase: Lactonase, 99.5 1.4E-10 3.1E-15 125.8 37.5 261 145-406 37-345 (345)
238 KOG2315 Predicted translation 99.5 1.1E-11 2.4E-16 133.2 27.5 271 144-427 34-391 (566)
239 PRK04792 tolB translocation pr 99.5 1.1E-11 2.5E-16 138.9 29.1 235 167-409 199-447 (448)
240 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-11 7.1E-16 131.2 31.8 270 157-429 6-305 (369)
241 PF10282 Lactonase: Lactonase, 99.5 2.3E-10 5.1E-15 124.1 38.4 272 159-431 2-327 (345)
242 KOG2041 WD40 repeat protein [G 99.5 4.2E-12 9E-17 138.6 24.3 273 143-421 13-332 (1189)
243 COG5354 Uncharacterized protei 99.5 7.5E-12 1.6E-16 133.0 25.6 276 143-428 31-397 (561)
244 PF08662 eIF2A: Eukaryotic tra 99.5 2.7E-12 5.9E-17 127.3 21.0 155 190-350 9-186 (194)
245 KOG0974 WD-repeat protein WDR6 99.5 8.4E-13 1.8E-17 150.5 19.1 267 146-429 9-291 (967)
246 PRK00178 tolB translocation pr 99.5 8.3E-12 1.8E-16 139.7 27.1 220 139-364 193-427 (430)
247 TIGR02800 propeller_TolB tol-p 99.5 6.9E-12 1.5E-16 139.6 26.2 218 139-362 184-416 (417)
248 PF08662 eIF2A: Eukaryotic tra 99.5 5.6E-12 1.2E-16 125.1 21.0 155 148-308 9-186 (194)
249 PRK01029 tolB translocation pr 99.5 3.2E-11 6.9E-16 134.4 29.0 238 166-409 165-425 (428)
250 PRK04792 tolB translocation pr 99.5 1.4E-11 3.1E-16 138.1 25.8 219 140-364 213-446 (448)
251 KOG4547 WD40 repeat-containing 99.4 2.2E-11 4.8E-16 131.9 24.8 188 197-386 4-221 (541)
252 PRK01029 tolB translocation pr 99.4 3.5E-11 7.5E-16 134.1 27.1 222 140-364 180-424 (428)
253 KOG1354 Serine/threonine prote 99.4 5.8E-12 1.2E-16 127.9 18.5 240 186-428 25-361 (433)
254 TIGR03300 assembly_YfgL outer 99.4 8.5E-11 1.8E-15 129.2 29.5 254 155-423 104-376 (377)
255 TIGR03300 assembly_YfgL outer 99.4 1E-10 2.2E-15 128.6 29.6 265 156-433 65-345 (377)
256 KOG4547 WD40 repeat-containing 99.4 3.9E-11 8.5E-16 130.1 24.6 188 154-343 3-221 (541)
257 KOG0974 WD-repeat protein WDR6 99.4 5.6E-12 1.2E-16 143.9 18.7 196 187-386 88-289 (967)
258 KOG1409 Uncharacterized conser 99.4 1.5E-11 3.2E-16 125.1 19.0 246 137-386 17-271 (404)
259 KOG1334 WD40 repeat protein [G 99.4 3.9E-12 8.4E-17 134.4 14.3 253 177-430 133-428 (559)
260 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.4E-14 117.0 32.9 258 166-431 27-335 (352)
261 KOG2314 Translation initiation 99.4 2.1E-10 4.5E-15 123.0 24.8 277 146-427 212-526 (698)
262 PF04762 IKI3: IKI3 family; I 99.3 1.3E-09 2.7E-14 131.1 34.2 284 142-429 73-459 (928)
263 KOG0280 Uncharacterized conser 99.3 1.6E-10 3.5E-15 115.6 20.2 242 143-386 68-334 (339)
264 KOG1064 RAVE (regulator of V-A 99.3 1E-11 2.2E-16 147.1 13.2 203 136-351 2200-2407(2439)
265 KOG2314 Translation initiation 99.3 8E-10 1.7E-14 118.6 24.4 276 146-426 251-573 (698)
266 KOG1409 Uncharacterized conser 99.3 1.2E-10 2.5E-15 118.7 16.8 251 177-431 15-275 (404)
267 KOG2041 WD40 repeat protein [G 99.3 2.9E-10 6.2E-15 124.6 20.9 247 133-384 60-336 (1189)
268 COG2706 3-carboxymuconate cycl 99.3 1.9E-08 4E-13 104.1 32.2 267 165-432 15-327 (346)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.1E-08 2.4E-13 109.4 31.3 236 152-393 53-338 (352)
270 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.5E-16 131.8 8.4 205 179-387 728-950 (1034)
271 COG2706 3-carboxymuconate cycl 99.3 2.2E-08 4.9E-13 103.5 32.2 265 142-407 37-345 (346)
272 KOG4190 Uncharacterized conser 99.2 3.5E-11 7.7E-16 128.1 11.6 280 137-422 728-1032(1034)
273 COG4946 Uncharacterized protei 99.2 1.1E-08 2.3E-13 108.2 29.8 172 155-331 331-507 (668)
274 PLN02919 haloacid dehalogenase 99.2 9E-09 1.9E-13 126.0 32.8 239 148-389 571-892 (1057)
275 KOG0309 Conserved WD40 repeat- 99.2 8.4E-11 1.8E-15 129.3 13.3 283 144-427 24-340 (1081)
276 KOG1912 WD40 repeat protein [G 99.2 1.2E-09 2.7E-14 121.0 21.4 241 145-387 16-306 (1062)
277 COG5170 CDC55 Serine/threonine 99.2 2.9E-10 6.4E-15 114.1 15.2 239 143-384 25-366 (460)
278 KOG1912 WD40 repeat protein [G 99.2 4.1E-09 8.9E-14 116.9 24.4 288 138-427 49-552 (1062)
279 KOG4532 WD40-like repeat conta 99.2 3.1E-09 6.7E-14 105.1 21.1 230 155-386 83-332 (344)
280 KOG2315 Predicted translation 99.2 2.4E-09 5.1E-14 115.6 22.1 250 148-409 129-411 (566)
281 PF04762 IKI3: IKI3 family; I 99.2 2.1E-08 4.5E-13 120.7 32.8 282 143-428 119-521 (928)
282 PRK11138 outer membrane biogen 99.2 7E-09 1.5E-13 114.7 26.9 260 155-425 119-393 (394)
283 PRK04043 tolB translocation pr 99.2 1.8E-08 3.9E-13 111.8 30.0 210 166-385 169-400 (419)
284 PF08450 SGL: SMP-30/Gluconola 99.2 4E-08 8.7E-13 101.3 30.7 218 149-373 4-244 (246)
285 KOG1064 RAVE (regulator of V-A 99.2 1.1E-10 2.3E-15 138.8 12.2 196 183-392 2205-2405(2439)
286 PRK04043 tolB translocation pr 99.2 1.3E-08 2.8E-13 113.0 27.7 191 146-343 189-401 (419)
287 KOG4532 WD40-like repeat conta 99.1 8.4E-09 1.8E-13 102.1 22.0 231 197-427 83-332 (344)
288 PRK11138 outer membrane biogen 99.1 1.3E-08 2.8E-13 112.6 26.4 264 156-430 69-357 (394)
289 PLN02919 haloacid dehalogenase 99.1 6.2E-08 1.3E-12 118.7 33.7 237 190-430 571-892 (1057)
290 PF13360 PQQ_2: PQQ-like domai 99.1 2.6E-08 5.7E-13 101.6 26.0 218 165-390 2-235 (238)
291 COG4946 Uncharacterized protei 99.1 2.2E-08 4.9E-13 105.8 24.4 148 141-290 356-508 (668)
292 COG5170 CDC55 Serine/threonine 99.1 3.6E-09 7.8E-14 106.4 16.7 240 186-428 26-369 (460)
293 KOG0309 Conserved WD40 repeat- 99.1 8.6E-10 1.9E-14 121.5 13.2 240 186-426 24-277 (1081)
294 KOG1832 HIV-1 Vpr-binding prot 99.0 2.5E-10 5.3E-15 127.6 6.8 216 138-371 1095-1317(1516)
295 KOG3914 WD repeat protein WDR4 99.0 4.7E-09 1E-13 109.4 14.6 161 146-309 64-232 (390)
296 PF13360 PQQ_2: PQQ-like domai 99.0 1.8E-07 4E-12 95.4 25.7 215 206-429 1-233 (238)
297 KOG3914 WD repeat protein WDR4 99.0 6.5E-09 1.4E-13 108.4 14.3 162 188-351 64-232 (390)
298 KOG4714 Nucleoporin [Nuclear s 99.0 4.7E-09 1E-13 103.5 12.4 196 147-343 39-255 (319)
299 KOG1920 IkappaB kinase complex 99.0 2.6E-07 5.5E-12 108.0 27.7 236 144-384 68-364 (1265)
300 KOG0882 Cyclophilin-related pe 99.0 9.1E-09 2E-13 108.2 14.1 244 142-388 7-308 (558)
301 PF07433 DUF1513: Protein of u 99.0 9.2E-07 2E-11 91.8 28.6 226 147-379 7-279 (305)
302 PF08450 SGL: SMP-30/Gluconola 99.0 1.5E-06 3.3E-11 89.5 30.7 208 191-407 4-233 (246)
303 KOG1275 PAB-dependent poly(A) 98.9 7.3E-09 1.6E-13 117.0 13.7 181 239-424 146-340 (1118)
304 COG5354 Uncharacterized protei 98.9 2.1E-07 4.6E-12 99.7 23.6 251 169-427 15-307 (561)
305 KOG4649 PQQ (pyrrolo-quinoline 98.9 2E-06 4.4E-11 85.3 26.8 264 155-427 62-352 (354)
306 PF15492 Nbas_N: Neuroblastoma 98.9 3.2E-06 6.9E-11 85.5 27.6 227 150-388 3-262 (282)
307 PF00930 DPPIV_N: Dipeptidyl p 98.8 9.1E-07 2E-11 96.4 25.2 259 153-414 1-343 (353)
308 KOG1832 HIV-1 Vpr-binding prot 98.8 2.3E-09 5E-14 120.0 4.4 196 177-388 1092-1294(1516)
309 KOG1645 RING-finger-containing 98.8 3E-07 6.5E-12 96.0 18.4 253 168-427 175-462 (463)
310 KOG3621 WD40 repeat-containing 98.8 3.6E-07 7.9E-12 101.5 20.2 275 145-428 34-355 (726)
311 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 84.1 29.5 235 188-430 6-287 (305)
312 KOG2066 Vacuolar assembly/sort 98.8 5.1E-07 1.1E-11 101.6 20.6 182 186-385 39-233 (846)
313 KOG2114 Vacuolar assembly/sort 98.8 1.1E-06 2.5E-11 99.4 23.0 207 151-359 30-261 (933)
314 cd00216 PQQ_DH Dehydrogenases 98.8 3E-06 6.4E-11 96.4 26.9 271 156-434 61-432 (488)
315 PF15492 Nbas_N: Neuroblastoma 98.7 1.2E-06 2.6E-11 88.5 19.9 197 146-353 45-270 (282)
316 KOG4714 Nucleoporin [Nuclear s 98.7 7.8E-08 1.7E-12 95.1 10.1 147 281-427 100-255 (319)
317 KOG2695 WD40 repeat protein [G 98.7 4.3E-08 9.3E-13 100.3 8.5 160 244-407 228-401 (425)
318 KOG1920 IkappaB kinase complex 98.7 7.5E-06 1.6E-10 96.1 27.8 198 186-387 68-324 (1265)
319 KOG1275 PAB-dependent poly(A) 98.7 3.2E-07 6.9E-12 104.1 16.1 182 155-341 146-341 (1118)
320 KOG2066 Vacuolar assembly/sort 98.7 5.3E-07 1.1E-11 101.5 17.4 182 144-342 39-233 (846)
321 KOG1645 RING-finger-containing 98.7 6E-07 1.3E-11 93.8 16.3 241 139-385 188-461 (463)
322 cd00216 PQQ_DH Dehydrogenases 98.7 1.1E-05 2.5E-10 91.6 28.3 229 157-395 111-434 (488)
323 KOG0882 Cyclophilin-related pe 98.6 3.2E-07 7E-12 96.8 13.0 209 139-350 48-313 (558)
324 KOG2695 WD40 repeat protein [G 98.6 1E-07 2.2E-12 97.5 8.8 159 202-363 228-401 (425)
325 PF06433 Me-amine-dh_H: Methyl 98.6 5.8E-05 1.2E-09 79.5 28.5 241 150-394 41-329 (342)
326 KOG2114 Vacuolar assembly/sort 98.5 5.8E-06 1.3E-10 93.9 20.8 204 193-399 30-257 (933)
327 PF04053 Coatomer_WDAD: Coatom 98.5 2.2E-05 4.7E-10 87.3 24.0 224 181-427 27-263 (443)
328 PF11768 DUF3312: Protein of u 98.5 0.00018 3.9E-09 79.6 30.1 116 270-388 205-332 (545)
329 KOG1008 Uncharacterized conser 98.5 6.6E-08 1.4E-12 105.9 3.4 258 143-408 55-353 (783)
330 PF04053 Coatomer_WDAD: Coatom 98.5 3.6E-05 7.8E-10 85.6 25.0 222 142-385 30-262 (443)
331 PRK02888 nitrous-oxide reducta 98.5 2.7E-05 5.8E-10 87.9 23.8 223 155-386 140-405 (635)
332 PF14583 Pectate_lyase22: Olig 98.5 0.00023 5.1E-09 76.3 29.4 273 150-428 41-383 (386)
333 PRK02888 nitrous-oxide reducta 98.4 5.8E-05 1.3E-09 85.3 24.6 260 159-427 69-405 (635)
334 PF02897 Peptidase_S9_N: Proly 98.4 0.00032 6.9E-09 78.2 30.7 240 146-389 125-408 (414)
335 PF08596 Lgl_C: Lethal giant l 98.4 5.7E-05 1.2E-09 82.9 24.0 207 146-353 3-301 (395)
336 PF06433 Me-amine-dh_H: Methyl 98.4 0.00056 1.2E-08 72.2 29.4 255 166-428 17-322 (342)
337 KOG3617 WD40 and TPR repeat-co 98.4 9.6E-06 2.1E-10 91.4 16.6 185 148-342 19-220 (1416)
338 PF00930 DPPIV_N: Dipeptidyl p 98.3 8.4E-05 1.8E-09 81.0 23.2 232 195-428 1-315 (353)
339 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00055 1.2E-08 68.4 25.9 189 156-351 23-215 (354)
340 COG0823 TolB Periplasmic compo 98.3 5.5E-05 1.2E-09 83.9 21.4 199 168-372 175-386 (425)
341 PF00780 CNH: CNH domain; Int 98.3 0.00043 9.4E-09 72.4 27.4 220 154-389 5-259 (275)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.00064 1.4E-08 77.9 30.6 189 156-347 69-338 (527)
343 PF06977 SdiA-regulated: SdiA- 98.3 0.00052 1.1E-08 70.4 26.8 200 137-339 14-247 (248)
344 KOG1008 Uncharacterized conser 98.3 1.8E-07 3.9E-12 102.6 1.5 197 186-385 56-275 (783)
345 PF04841 Vps16_N: Vps16, N-ter 98.3 0.002 4.4E-08 71.5 33.6 190 167-364 62-269 (410)
346 KOG3617 WD40 and TPR repeat-co 98.3 7.8E-06 1.7E-10 92.1 14.1 255 147-413 62-370 (1416)
347 COG0823 TolB Periplasmic compo 98.3 5.2E-05 1.1E-09 84.0 19.9 191 138-332 186-389 (425)
348 COG1506 DAP2 Dipeptidyl aminop 98.3 0.00023 4.9E-09 83.4 25.6 304 182-520 55-409 (620)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.00081 1.7E-08 77.1 29.3 237 156-395 120-500 (527)
350 COG3391 Uncharacterized conser 98.2 0.00048 1.1E-08 75.8 26.6 217 146-364 75-308 (381)
351 PF04841 Vps16_N: Vps16, N-ter 98.2 0.00053 1.1E-08 76.1 26.9 207 209-424 62-285 (410)
352 KOG3621 WD40 repeat-containing 98.2 5E-05 1.1E-09 84.9 17.4 154 186-342 33-197 (726)
353 PF08596 Lgl_C: Lethal giant l 98.2 0.00045 9.7E-09 75.9 24.8 237 188-425 3-334 (395)
354 COG3391 Uncharacterized conser 98.2 0.0018 3.8E-08 71.4 29.5 261 146-410 32-310 (381)
355 PF06977 SdiA-regulated: SdiA- 98.2 0.0007 1.5E-08 69.5 23.9 198 181-382 16-247 (248)
356 PF00400 WD40: WD domain, G-be 98.2 5.8E-06 1.3E-10 58.9 6.3 38 177-214 2-39 (39)
357 PF00400 WD40: WD domain, G-be 98.2 5.9E-06 1.3E-10 58.9 6.2 39 302-340 1-39 (39)
358 PF02897 Peptidase_S9_N: Proly 98.2 0.0021 4.5E-08 71.6 29.8 236 189-428 126-406 (414)
359 PF03178 CPSF_A: CPSF A subuni 98.1 0.0005 1.1E-08 73.9 23.6 211 166-382 2-262 (321)
360 COG3386 Gluconolactonase [Carb 98.1 0.0011 2.4E-08 70.3 24.9 219 150-374 30-275 (307)
361 PF11768 DUF3312: Protein of u 98.1 0.0014 3E-08 72.8 25.6 115 186-302 205-331 (545)
362 PF08553 VID27: VID27 cytoplas 98.1 0.00044 9.6E-09 81.0 23.0 141 199-341 494-646 (794)
363 PF00780 CNH: CNH domain; Int 98.1 0.0026 5.7E-08 66.5 26.5 218 196-428 5-257 (275)
364 KOG1897 Damage-specific DNA bi 98.0 0.016 3.6E-07 67.7 33.6 180 251-434 751-950 (1096)
365 PRK10115 protease 2; Provision 98.0 0.0059 1.3E-07 72.3 30.2 195 187-386 127-345 (686)
366 PF14583 Pectate_lyase22: Olig 98.0 0.0063 1.4E-07 65.5 27.2 239 172-415 16-299 (386)
367 PRK13616 lipoprotein LpqB; Pro 97.9 0.0011 2.3E-08 76.7 22.1 181 229-418 350-560 (591)
368 PF03178 CPSF_A: CPSF A subuni 97.9 0.0027 5.9E-08 68.2 23.7 210 208-423 2-262 (321)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0047 1E-07 67.9 25.6 89 149-238 6-118 (415)
370 PF14870 PSII_BNR: Photosynthe 97.9 0.049 1.1E-06 57.6 32.4 270 143-423 15-301 (302)
371 PF08553 VID27: VID27 cytoplas 97.9 0.0006 1.3E-08 79.9 19.1 134 164-299 502-646 (794)
372 KOG1897 Damage-specific DNA bi 97.9 0.022 4.7E-07 66.7 30.7 284 141-430 527-860 (1096)
373 PRK10115 protease 2; Provision 97.9 0.017 3.8E-07 68.4 31.3 239 145-388 127-397 (686)
374 COG3386 Gluconolactonase [Carb 97.8 0.013 2.8E-07 62.3 25.8 209 192-408 30-264 (307)
375 PHA02713 hypothetical protein; 97.7 0.0018 3.9E-08 74.8 20.1 214 167-388 273-536 (557)
376 PF05096 Glu_cyclase_2: Glutam 97.7 0.012 2.6E-07 60.3 23.2 183 187-374 45-250 (264)
377 KOG4499 Ca2+-binding protein R 97.7 0.0073 1.6E-07 59.8 20.6 213 158-373 29-272 (310)
378 COG3204 Uncharacterized protei 97.7 0.0062 1.3E-07 62.5 20.9 169 182-351 81-271 (316)
379 PRK13616 lipoprotein LpqB; Pro 97.7 0.0026 5.5E-08 73.6 19.9 183 145-338 350-564 (591)
380 COG3490 Uncharacterized protei 97.7 0.014 3E-07 59.5 22.1 234 189-425 70-347 (366)
381 PF05694 SBP56: 56kDa selenium 97.6 0.044 9.6E-07 59.6 26.7 199 145-343 65-343 (461)
382 PF05096 Glu_cyclase_2: Glutam 97.6 0.064 1.4E-06 55.1 26.3 183 144-331 44-249 (264)
383 COG3490 Uncharacterized protei 97.6 0.015 3.3E-07 59.2 21.2 232 148-384 71-347 (366)
384 PF14870 PSII_BNR: Photosynthe 97.6 0.042 9.1E-07 58.1 25.7 227 146-382 63-301 (302)
385 KOG2079 Vacuolar assembly/sort 97.6 0.00059 1.3E-08 79.8 12.6 101 197-299 98-202 (1206)
386 COG3204 Uncharacterized protei 97.6 0.015 3.3E-07 59.7 21.2 199 225-423 82-309 (316)
387 KOG2444 WD40 repeat protein [G 97.5 9.5E-05 2.1E-09 72.8 4.9 141 242-386 32-178 (238)
388 PRK13684 Ycf48-like protein; P 97.5 0.17 3.7E-06 54.6 30.3 271 143-425 44-330 (334)
389 COG5276 Uncharacterized conser 97.5 0.15 3.3E-06 52.4 26.8 195 185-388 85-288 (370)
390 TIGR02604 Piru_Ver_Nterm putat 97.5 0.037 7.9E-07 60.7 24.9 143 187-332 14-203 (367)
391 KOG2395 Protein involved in va 97.5 0.0036 7.8E-08 68.4 16.2 143 197-342 344-500 (644)
392 TIGR03074 PQQ_membr_DH membran 97.5 0.029 6.3E-07 66.7 25.2 194 198-392 194-484 (764)
393 KOG4441 Proteins containing BT 97.5 0.007 1.5E-07 70.0 19.6 225 153-385 282-546 (571)
394 TIGR03074 PQQ_membr_DH membran 97.5 0.029 6.3E-07 66.7 25.0 195 156-351 194-486 (764)
395 KOG4640 Anaphase-promoting com 97.4 0.00056 1.2E-08 75.9 9.8 94 270-364 20-115 (665)
396 KOG2444 WD40 repeat protein [G 97.4 0.0002 4.3E-09 70.5 5.1 140 201-343 33-178 (238)
397 TIGR03118 PEPCTERM_chp_1 conse 97.4 0.13 2.9E-06 53.3 25.5 218 146-364 24-307 (336)
398 COG5276 Uncharacterized conser 97.4 0.086 1.9E-06 54.2 23.8 213 269-488 85-312 (370)
399 KOG2079 Vacuolar assembly/sort 97.3 0.0018 3.8E-08 75.9 12.5 101 155-257 98-202 (1206)
400 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.017 3.7E-07 51.1 15.7 101 231-338 2-110 (111)
401 KOG4640 Anaphase-promoting com 97.3 0.001 2.2E-08 73.9 9.7 95 312-408 20-115 (665)
402 KOG3630 Nuclear pore complex, 97.3 0.01 2.3E-07 70.0 17.7 141 188-329 102-260 (1405)
403 PHA02713 hypothetical protein; 97.2 0.0054 1.2E-07 71.0 15.4 185 155-347 303-538 (557)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.19 4.1E-06 55.4 26.4 84 269-352 306-408 (415)
405 COG1520 FOG: WD40-like repeat 97.2 0.39 8.4E-06 52.7 29.2 192 158-353 70-279 (370)
406 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.019 4.1E-07 50.8 13.7 102 273-381 2-110 (111)
407 PF05694 SBP56: 56kDa selenium 97.0 0.47 1E-05 51.9 26.4 194 197-390 86-347 (461)
408 KOG2395 Protein involved in va 97.0 0.022 4.7E-07 62.5 16.1 139 285-427 349-501 (644)
409 PF10647 Gmad1: Lipoprotein Lp 97.0 0.1 2.2E-06 54.0 20.8 145 146-293 25-188 (253)
410 PF10647 Gmad1: Lipoprotein Lp 97.0 0.19 4.1E-06 52.1 22.2 144 188-334 25-187 (253)
411 KOG4441 Proteins containing BT 96.9 0.055 1.2E-06 62.7 19.7 184 197-388 284-502 (571)
412 smart00320 WD40 WD40 repeats. 96.9 0.0027 5.8E-08 42.8 5.6 38 177-214 3-40 (40)
413 PRK13684 Ycf48-like protein; P 96.9 0.34 7.4E-06 52.4 24.1 151 228-384 172-330 (334)
414 PHA03098 kelch-like protein; P 96.9 0.03 6.4E-07 64.7 17.0 185 154-344 293-513 (534)
415 KOG4499 Ca2+-binding protein R 96.8 0.11 2.4E-06 51.7 17.7 134 187-322 109-263 (310)
416 smart00036 CNH Domain found in 96.8 0.96 2.1E-05 48.1 28.6 224 155-389 12-274 (302)
417 PF07995 GSDH: Glucose / Sorbo 96.8 0.35 7.5E-06 52.2 23.5 231 146-380 3-330 (331)
418 smart00320 WD40 WD40 repeats. 96.8 0.0036 7.8E-08 42.2 5.5 38 303-340 3-40 (40)
419 TIGR02604 Piru_Ver_Nterm putat 96.7 0.52 1.1E-05 51.6 24.3 142 145-289 14-202 (367)
420 COG1520 FOG: WD40-like repeat 96.7 1.4 2.9E-05 48.3 29.7 220 198-427 68-306 (370)
421 PF10168 Nup88: Nuclear pore c 96.7 0.21 4.5E-06 59.2 22.0 94 187-303 85-182 (717)
422 PLN00033 photosystem II stabil 96.7 1.5 3.2E-05 48.5 30.9 143 273-423 241-396 (398)
423 PF10433 MMS1_N: Mono-function 96.6 2.1 4.5E-05 49.1 30.1 248 153-408 219-503 (504)
424 PHA03098 kelch-like protein; P 96.5 0.076 1.7E-06 61.3 17.2 182 197-387 294-513 (534)
425 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.9 4.1E-05 47.8 32.1 265 155-430 36-364 (418)
426 PF15390 DUF4613: Domain of un 96.5 0.19 4.1E-06 56.3 18.7 148 187-342 20-186 (671)
427 PRK05560 DNA gyrase subunit A; 96.5 1.9 4.1E-05 52.2 29.1 253 151-411 493-794 (805)
428 PF07995 GSDH: Glucose / Sorbo 96.5 0.51 1.1E-05 50.9 22.1 231 188-423 3-330 (331)
429 KOG3630 Nuclear pore complex, 96.5 0.023 5E-07 67.3 12.1 141 230-372 102-260 (1405)
430 KOG1898 Splicing factor 3b, su 96.3 3.8 8.3E-05 49.1 28.4 100 156-255 549-668 (1205)
431 COG1506 DAP2 Dipeptidyl aminop 96.3 2.3 4.9E-05 50.1 27.6 282 139-431 54-389 (620)
432 PLN00033 photosystem II stabil 96.2 2.5 5.3E-05 46.8 26.0 146 231-382 241-396 (398)
433 COG3823 Glutamine cyclotransfe 96.2 0.12 2.6E-06 50.6 13.6 174 197-374 55-248 (262)
434 PF10214 Rrn6: RNA polymerase 96.2 3.7 8E-05 49.6 29.6 115 270-386 145-277 (765)
435 KOG2280 Vacuolar assembly/sort 96.2 0.28 6.1E-06 56.3 18.4 211 208-424 64-285 (829)
436 KOG2377 Uncharacterized conser 96.2 0.99 2.2E-05 49.2 21.2 152 148-302 26-187 (657)
437 KOG1916 Nuclear protein, conta 96.2 0.0016 3.4E-08 74.8 0.6 214 139-386 127-375 (1283)
438 PLN02153 epithiospecifier prot 96.1 1.5 3.4E-05 47.3 23.6 184 155-345 32-287 (341)
439 PHA02790 Kelch-like protein; P 96.1 0.22 4.9E-06 56.6 17.6 181 155-344 271-472 (480)
440 PF02333 Phytase: Phytase; In 96.1 1.4 3.1E-05 47.9 22.4 187 197-388 67-293 (381)
441 TIGR01063 gyrA DNA gyrase, A s 96.0 3.9 8.4E-05 49.5 28.3 235 147-385 487-769 (800)
442 KOG1898 Splicing factor 3b, su 95.9 5.9 0.00013 47.6 27.6 71 143-213 581-668 (1205)
443 TIGR03118 PEPCTERM_chp_1 conse 95.8 2.9 6.3E-05 43.7 22.3 219 189-408 25-307 (336)
444 TIGR03548 mutarot_permut cycli 95.8 1.1 2.4E-05 48.0 20.8 105 197-303 72-197 (323)
445 PF10395 Utp8: Utp8 family; I 95.8 2.6 5.7E-05 48.9 24.0 160 269-430 128-309 (670)
446 COG3292 Predicted periplasmic 95.8 0.68 1.5E-05 51.8 18.5 268 144-421 164-442 (671)
447 KOG2280 Vacuolar assembly/sort 95.8 0.81 1.7E-05 52.8 19.5 194 166-364 64-269 (829)
448 PHA02790 Kelch-like protein; P 95.7 0.45 9.8E-06 54.1 17.9 180 197-386 271-471 (480)
449 COG5167 VID27 Protein involved 95.6 0.16 3.4E-06 55.8 12.8 143 154-300 477-632 (776)
450 PF15390 DUF4613: Domain of un 95.6 0.65 1.4E-05 52.2 17.6 175 229-412 20-216 (671)
451 PRK14131 N-acetylneuraminic ac 95.6 1.7 3.7E-05 47.8 21.3 53 197-249 84-149 (376)
452 TIGR03547 muta_rot_YjhT mutatr 95.6 2.3 4.9E-05 46.0 22.1 53 197-249 63-128 (346)
453 PF10395 Utp8: Utp8 family; I 95.5 3.7 8E-05 47.7 24.0 159 227-391 128-311 (670)
454 KOG1983 Tomosyn and related SN 95.5 2.4 5.1E-05 52.4 23.9 108 145-258 36-144 (993)
455 PRK05560 DNA gyrase subunit A; 95.5 4.5 9.8E-05 49.0 25.9 214 145-363 537-790 (805)
456 COG5167 VID27 Protein involved 95.4 0.26 5.6E-06 54.2 13.6 141 197-342 478-632 (776)
457 KOG1916 Nuclear protein, conta 95.4 0.019 4E-07 66.4 5.0 190 165-389 110-327 (1283)
458 KOG2377 Uncharacterized conser 95.4 2.2 4.8E-05 46.6 20.1 151 191-344 27-187 (657)
459 PF12234 Rav1p_C: RAVE protein 95.4 0.4 8.7E-06 55.4 15.8 121 308-428 25-158 (631)
460 PLN02193 nitrile-specifier pro 95.3 3.1 6.6E-05 47.3 22.9 187 155-345 175-413 (470)
461 TIGR01063 gyrA DNA gyrase, A s 95.3 6.6 0.00014 47.5 26.6 197 144-342 534-769 (800)
462 PF03022 MRJP: Major royal jel 95.3 4.7 0.0001 42.6 22.9 161 251-413 35-250 (287)
463 COG4257 Vgb Streptogramin lyas 95.3 4.2 9E-05 41.9 20.7 222 188-414 63-291 (353)
464 KOG2100 Dipeptidyl aminopeptid 95.3 4.5 9.8E-05 48.6 24.9 56 151-206 103-167 (755)
465 PF12894 Apc4_WD40: Anaphase-p 95.2 0.066 1.4E-06 39.9 5.8 31 144-174 11-41 (47)
466 PF13449 Phytase-like: Esteras 95.0 6.1 0.00013 42.5 23.5 142 187-329 20-231 (326)
467 PF08728 CRT10: CRT10; InterP 94.9 0.92 2E-05 53.0 16.8 102 239-341 113-245 (717)
468 COG4590 ABC-type uncharacteriz 94.9 0.18 3.9E-06 54.6 10.2 162 265-430 215-390 (733)
469 PLN02153 epithiospecifier prot 94.8 2.9 6.2E-05 45.2 20.1 64 239-303 85-170 (341)
470 PF10168 Nup88: Nuclear pore c 94.8 2.1 4.6E-05 50.8 20.1 93 144-259 84-180 (717)
471 COG3823 Glutamine cyclotransfe 94.8 1 2.2E-05 44.3 14.3 172 155-330 55-247 (262)
472 PF03022 MRJP: Major royal jel 94.8 5.5 0.00012 42.0 21.3 185 146-330 2-253 (287)
473 PF02333 Phytase: Phytase; In 94.7 8 0.00017 42.2 23.4 193 154-350 66-299 (381)
474 KOG0783 Uncharacterized conser 94.7 0.46 1E-05 55.0 13.4 226 190-421 188-453 (1267)
475 COG4257 Vgb Streptogramin lyas 94.7 6.1 0.00013 40.7 22.8 230 144-386 61-306 (353)
476 COG5290 IkappaB kinase complex 94.6 0.48 1E-05 54.6 13.2 90 233-324 251-348 (1243)
477 PF10214 Rrn6: RNA polymerase 94.6 6.1 0.00013 47.8 23.9 114 312-427 145-277 (765)
478 PF11725 AvrE: Pathogenicity f 94.6 1.2 2.6E-05 55.7 17.4 147 143-300 361-516 (1774)
479 KOG2247 WD40 repeat-containing 94.6 0.011 2.3E-07 64.4 0.3 137 148-286 38-175 (615)
480 KOG3616 Selective LIM binding 94.5 1.1 2.4E-05 51.4 15.6 34 142-175 12-45 (1636)
481 PF12894 Apc4_WD40: Anaphase-p 94.5 0.1 2.3E-06 38.8 5.4 35 312-347 11-45 (47)
482 PF14269 Arylsulfotran_2: Aryl 94.5 7.9 0.00017 41.1 23.4 69 315-384 146-219 (299)
483 PF10433 MMS1_N: Mono-function 94.5 12 0.00025 43.0 29.8 231 195-430 219-480 (504)
484 PF08728 CRT10: CRT10; InterP 94.4 1.5 3.2E-05 51.3 17.0 111 273-384 103-245 (717)
485 PF12234 Rav1p_C: RAVE protein 94.4 1.2 2.7E-05 51.5 16.2 111 271-384 30-155 (631)
486 PF07250 Glyoxal_oxid_N: Glyox 94.3 1.6 3.6E-05 44.6 15.4 142 209-353 47-208 (243)
487 PF14761 HPS3_N: Hermansky-Pud 94.3 2.7 5.9E-05 41.9 16.2 138 157-299 29-213 (215)
488 PF05935 Arylsulfotrans: Aryls 94.2 13 0.00027 42.4 24.8 116 192-311 153-312 (477)
489 KOG2247 WD40 repeat-containing 94.2 0.0055 1.2E-07 66.5 -2.8 143 232-378 38-181 (615)
490 PF08801 Nucleoporin_N: Nup133 94.0 1.9 4.2E-05 48.1 16.9 32 312-343 189-220 (422)
491 KOG1924 RhoA GTPase effector D 94.0 0.25 5.4E-06 56.7 9.3 11 513-523 525-535 (1102)
492 TIGR03547 muta_rot_YjhT mutatr 93.8 3.4 7.3E-05 44.7 18.0 53 155-207 63-128 (346)
493 COG3292 Predicted periplasmic 93.8 3.4 7.4E-05 46.5 17.4 259 145-413 206-478 (671)
494 COG5290 IkappaB kinase complex 93.8 1.4 3.1E-05 51.0 14.8 222 142-373 74-355 (1243)
495 PRK14131 N-acetylneuraminic ac 93.8 3.1 6.8E-05 45.7 17.8 53 155-207 84-149 (376)
496 KOG4460 Nuclear pore complex, 93.8 2.5 5.4E-05 47.0 16.1 97 272-390 105-203 (741)
497 KOG1924 RhoA GTPase effector D 93.7 0.4 8.7E-06 55.1 10.4 7 623-629 606-612 (1102)
498 TIGR03548 mutarot_permut cycli 93.7 4.2 9.2E-05 43.5 18.2 106 155-261 72-197 (323)
499 KOG1900 Nuclear pore complex, 93.6 6.3 0.00014 48.5 20.5 135 164-301 97-273 (1311)
500 KOG4849 mRNA cleavage factor I 93.6 1.8 4E-05 45.2 14.0 11 659-669 347-357 (498)
No 1
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-55 Score=446.04 Aligned_cols=375 Identities=59% Similarity=1.073 Sum_probs=355.6
Q ss_pred chhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCc
Q 005123 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCS 146 (713)
Q Consensus 67 ~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~ 146 (713)
..+++|+++...|+.|||.+.++++.+.|.|+.. +++.+++....+.+++++...+..+....+..+|++...++-++.
T Consensus 20 ~~~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~ 98 (464)
T KOG0284|consen 20 KEDGKRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCP 98 (464)
T ss_pred cccCccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEeccccccccc
Confidence 3456999999999999999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
|..|.|.|+|+.|++|+..|.+.||+..+...+..+..|++.|+++.|+.++.++++|+.+|.|++|+.+...+......
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ah 178 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAH 178 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHh
Confidence 99999999999999999999999999999888889999999999999999999999999999999999988877766666
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
|.+.|++++|++++..|++|++||+|+|||....+..+.+.+|...|++++|+|...+|+++++|..|++||.+++.++.
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++..|+..|..+.|++++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|....+|++|+.||.|.+|.+..
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCccccccccCCcc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTARDKFNMGQNQ 442 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 442 (713)
.+.+..+..+|+..|++++|+|-|.+||+ .|.++++|..+++++.....+......
T Consensus 339 ~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~~~~~ 396 (464)
T KOG0284|consen 339 EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGLSNNE 396 (464)
T ss_pred cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccccccccccc
Confidence 88888888999999999999999999987 999999999999999887765544443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-45 Score=373.70 Aligned_cols=285 Identities=28% Similarity=0.520 Sum_probs=259.4
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..++.+|.+.|.|+.|+|+|+.||+|+.|.++++||+.+.....+.++|...|.||+|+|||+.||+|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-eeeeeccCCCCeeEEEEec-----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 217 MNN-VKANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 217 ~~~-~~~~~~~~~~~V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+++ ....+.+|...|++|+|.| ..++|++++.||+|+|||+..+.++..+.+|...|+||.|--+ .+|++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCC
Confidence 875 4567889999999999965 5678999999999999999999999999999999999999754 48999999
Q ss_pred CCcEEEEECCCCceEEEEc-------------------------------------------------------------
Q 005123 291 DSLVKLWDAKSGRELCSFH------------------------------------------------------------- 309 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~------------------------------------------------------------- 309 (713)
|++|++|+...|++.++++
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999987665443333
Q ss_pred ------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 310 ------------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 310 ------------------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|...|+.+.||||+++||+++-|+.|++||-++|+.+.+|++|-..|+.++|+. +.++|+
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlV 425 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLV 425 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEE
Confidence 2344588999999999999999999999999999999999999999999999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
+||.|.++++||+++.+.. .-+-+|.+.|.++.|++||..+|| .|..++||.
T Consensus 426 S~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999876644 445579999999999999999987 899999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-43 Score=362.17 Aligned_cols=283 Identities=25% Similarity=0.412 Sum_probs=270.0
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+...+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|.+.|.++.|+|. +..|++|+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356789999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
..+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+|+|++||.++++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
+++++++..+.+|...|.+|+|+|+|-.||||+.|++++|||++..+++.++.+|.+-|+.|+|+|..+.+|+|++.|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 379 I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++||...+.. .++.+.+|++.|.++++++|+.++++ .|+++|+|.
T Consensus 412 ~kiWs~~~~~-~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWS-PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcc-cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999986554 56677799999999999999977765 999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.8e-41 Score=328.90 Aligned_cols=285 Identities=25% Similarity=0.401 Sum_probs=265.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.|++|.++|.++.|+.|.++|++++.||.+.|||.-+.+.+..+..-...|..++|+|.++++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEe
Q 005123 217 MN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (713)
Q Consensus 217 ~~------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs 289 (713)
+. .+.+.+.+|...+.++.|.. +..|++++.|.++.+||+++++.+..|.+|.+.|.+|+++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 65 45667889999999999986 56799999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCC
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE 367 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~ 367 (713)
.|+..+|||+|.+.++.+|.+|.+.|++|+|.|+|.-|++|++|+++++||+|....+..|... ...|++++||. .+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 9999999999999999999999999999999999999999999999999999999998888732 25799999999 89
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++|++|..|.++.+||.-+.+ .+.++.+|++.|++|..++||..+|+ .|.++|||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e-~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGE-RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccc-eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999985544 56677799999999999999999986 999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-38 Score=306.33 Aligned_cols=290 Identities=21% Similarity=0.314 Sum_probs=251.1
Q ss_pred eEEEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC-----CceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t-----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
..++.++++|++.|+.++.... -+.|++++.|.++.+|++.. +...+.+++|+..|..+..++|+++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3456789999999999999987 46788999999999998654 56688999999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCC--CCE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPT--KSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spd--g~~ 284 (713)
+++++||+.+++....+.+|...|.+++|++|++.|++++.|++|++||+............ .+.|.|+.|+|+ .-+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999998765444333332 789999999997 679
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
|++++.|++|++||+++.+....+.+|.+.++.+++|+||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999988776 788999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCceEEEecc--------cCCCeEEEEEcCCCcEE-EE-eCCcEEEEecC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--------HDNTVWDLAWHPIGYLL-CS-NDHTTKFWCRN 426 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--------h~~~V~~l~~spdg~~l-aS-~Dg~v~iWd~~ 426 (713)
+...|+.+ .+-.|+|||+++...+..+... ..-...+++|+.||..| +. .|+.|++|.+.
T Consensus 244 -nrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 -NRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -CceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 55555544 4557999999877654433211 12345678999999666 44 99999999874
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=325.27 Aligned_cols=247 Identities=22% Similarity=0.378 Sum_probs=239.6
Q ss_pred EEEeeCCCCCceEEEEEccC--CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+|.+|.+.|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|++++.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 44679999999999999997 5689999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
|++++..+....+|...|.+|+|.+||.++++|+.|..-+|||++++.++..+.+|...|.+|+|+|+|..|++|+.|++
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
++|||++..+.+.++.+|.+-|+.|+|++ .|.+|++++.|++++||..+++.+++++.+|++.|.++.+++ ++.+|++
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIAT 447 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEE
Confidence 99999999999999999999999999998 789999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
++.|.+|++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=312.77 Aligned_cols=290 Identities=25% Similarity=0.462 Sum_probs=255.4
Q ss_pred hceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCcee--------------eeEEEEeeCCCCCceEEEEEcc
Q 005123 89 VRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA--------------AKFVHTSLNKNRCSINRVLWTP 154 (713)
Q Consensus 89 ~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~l~~H~~~V~~v~~sp 154 (713)
..+.+.|+|+.+.+.... +...+..-+-.++++++...... ...+.+.|.+|+..|++++|.|
T Consensus 134 sGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred CCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 355689999988765322 22344455566777777655443 2334578999999999999976
Q ss_pred -----CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC
Q 005123 155 -----TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE 229 (713)
Q Consensus 155 -----dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~ 229 (713)
..++||+++.||.|+|||+..+.++..+.+|+..|+||+|-- ..+|++|+.|++|++|+...+.+..++++|..
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccch
Confidence 568999999999999999999999999999999999999963 36999999999999999999999999999999
Q ss_pred CeeEEEEec-----------CC-------------------------CEEEEEECCCeEEEEEcCC-CeeEEEEccCCCc
Q 005123 230 SVRDLSFCR-----------TD-------------------------LKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWD 272 (713)
Q Consensus 230 ~V~~l~fs~-----------dg-------------------------~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h~~~ 272 (713)
.|+.|+++- .+ ..|++|++|.++.+|+-.. .+.+..+.+|..-
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l 369 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL 369 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence 999998872 12 3499999999999999744 4578888999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
|+.+.|+||+++|++++.|..|++||.++|+.+.+|.+|-..|..++|+.|.++|++|+.|.++++||+++.+....+.+
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG 449 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG 449 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
|.+.|.++.|+| ++..+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 999999999999 899999999999999995
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-35 Score=303.49 Aligned_cols=285 Identities=29% Similarity=0.508 Sum_probs=259.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.++++|++.|++++|++++++|++++.||.|++||+.+.+....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++....+..+...|.++.|+++++++++++.|+.|++||+++.+....+..|...|.+++|++++.++++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999888888888899999999999998888888889999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
|+++++.+..+..+...|.+++|+++++.|++++.|+.|++||+++++.+..+..|...|.+++|++ ++.++++++.||
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCC
Confidence 9999998888888888999999999999999999999999999999999998888999999999999 588888888899
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEe
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWC 424 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd 424 (713)
.|++||+.+..... .+..|...|.+++|++++.+++ +.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQ-TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEE-EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999997655443 4447888999999999976654 3999999995
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=304.42 Aligned_cols=291 Identities=22% Similarity=0.365 Sum_probs=266.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.++++..++.+|-..|..+++|....||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.+++++.+.+|-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.+|.+.+.+-.+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
+||++.++...++..|+..|.+++.+|....||+++.|. |+-|++..++.+..+.+|...|.+++.+. +.++++|++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns--D~v~~~G~d 379 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS--DGVLVSGGD 379 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc--CceEEEcCC
Confidence 999999999999999999999999999999999998875 99999999999999999999999999875 678999999
Q ss_pred CCcEEEEEcCCCCceEEEe-------cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 376 DGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+|.|.+||.+++....... ...+..|++.+|+..+..|.+ .|.+|++|.-+...
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 9999999998775433321 113567999999999966554 99999999765443
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-37 Score=307.71 Aligned_cols=288 Identities=20% Similarity=0.377 Sum_probs=268.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+...+.+|+..|+.+.|+|+-..+++++.|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|=.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++ .++++.+.+|+..|.+++|-|.+.+|++++.|.+|+.||+.++.++.++.+|...|..+..+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCC----------C-----CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQN----------G-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspd----------g-----~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
++|-+.++.+...+..|...|.|++|.+. + .++++++.|++|++||+.++.++.++.+|...|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999998899999999999999753 2 48999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++|+| ++++|+++.+|+++++||+++.... ..+..|...|++++|+.+..++++ -|.++++|..
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 9999999999999999999877654 445589999999999999877765 8999999964
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-35 Score=304.95 Aligned_cols=290 Identities=21% Similarity=0.407 Sum_probs=251.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...++..|..-|+|+.|+|||+++|+++.||+|+|||-.+++.+..+. .|++.|.+|+|+||+..|++++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 356788899999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred EEcCCCceeee-------------------------------------------eccCCCCeeEEEEecCCCEEEEEECC
Q 005123 213 WQNNMNNVKAN-------------------------------------------KSAHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 213 wdl~~~~~~~~-------------------------------------------~~~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
||+.+.+++.+ +.+|...|+++..++|+++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 99877654433 24788999999999999999999999
Q ss_pred CeEEEEEcCCCeeE-----------EE--------------------E--------------------------------
Q 005123 250 TTVKVWDFARCQEE-----------RS--------------------L-------------------------------- 266 (713)
Q Consensus 250 g~I~iwDl~~~~~~-----------~~--------------------l-------------------------------- 266 (713)
|.|.-||+.++..- .. +
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999998543211 00 0
Q ss_pred ----------cc--------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCE
Q 005123 267 ----------TG--------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 267 ----------~~--------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~ 326 (713)
.. ......+++++++++.+++|+.|++|+||.+..... ...+..|.+.|++++||||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 00 001245788999999999999999999999987543 3345679999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeE-EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEE
Q 005123 327 VLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l-~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (713)
||++...+.|.+||+.+.+.. ..+.-|...|.+++|+| ++.++|+|+.|-.|.||+++.....+.+..+|...|+.+.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~ 580 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA 580 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence 999999999999999987764 33445999999999999 8899999999999999999988888888999999999999
Q ss_pred EcCCCcEEEE-eCCcEEEEecC
Q 005123 406 WHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 406 ~spdg~~laS-~Dg~v~iWd~~ 426 (713)
|..+..++.+ .|.+||+|++.
T Consensus 581 wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 581 WLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EecCceEEeccCcceeEEeccc
Confidence 9999888766 99999999863
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-35 Score=307.06 Aligned_cols=278 Identities=24% Similarity=0.483 Sum_probs=254.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+..|++++|+.+|++||+|+.||.++||+.. +.++.++..|++.|.+|.|+.+|++|++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4579999999999999999999999999965 677888999999999999999999999999999999999999999998
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
+..|...-.++.|-. ...|++++.|+.|+|+.+.....+.++.+|.+.|.+|.|++.+.+|+++++|++++||+.....
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 888888878899974 4568999999999999999989999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCCeEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNG---------NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg---------~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
....+..|...|..+.|+|+| ..|++++.|++|++||+..+.++++|..|..+|.+++|++ +++++|+|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 999999999999999999854 5689999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
.||.|.||++.+.+...... ..+.|..|+|+.+|..|+. .|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998776444333 3667999999999977754 99999998873
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=285.25 Aligned_cols=284 Identities=21% Similarity=0.438 Sum_probs=244.2
Q ss_pred EEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC---CceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS---FNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t---~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..+.+.+|++.|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|++++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678999999999999998 89999999999999999884 3444444 4699999999999999999999999999
Q ss_pred EEEEcCCC--ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---CeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 211 KYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 211 ~vwdl~~~--~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.||.-..+ +++.++.+|...|.+++|+.+|++||+|+.|+.|.||.+.. .+++..+..|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987654 67888999999999999999999999999999999999863 35678889999999999999999999
Q ss_pred EEEeCCCcEEEEECC---CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAK---SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~---t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||.+.+. .-..|...++.+.|
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence 999999999999765 35688999999999999999999999999999999999987632 12347788999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCC--CcEEE-EeCCcEEEEecC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPI--GYLLC-SNDHTTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spd--g~~la-S~Dg~v~iWd~~ 426 (713)
. ...|++++.|+.|++|..... +........|+..|+++.|++. ++++. ++||.|++|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 568999999999999987542 1123345679999999999994 34443 499999999874
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-36 Score=328.88 Aligned_cols=246 Identities=20% Similarity=0.416 Sum_probs=232.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-------------------------------ceEEEEeccCCCEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------------------------NFEMILQAHDHAIR 190 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-------------------------------~~~~~l~~h~~~V~ 190 (713)
.....|+|+.|+.|++.||.|..|..|++|.+... ...+++.+|.+.|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 34456999999999999999999999999986621 12345789999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
.+.|+|+.++|+++++|++|++|.+.+...+..+++|...|+++.|+|.|-+||+++.|++.++|.......++.+.+|.
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
+.|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.+|.+.|++++|||+|++|++|+.|+.|+|||+.+++.+..+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+|++.|.++.|+. ++.+||+++.|.+|++||+....
T Consensus 616 ~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999 89999999999999999986543
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-35 Score=287.73 Aligned_cols=292 Identities=25% Similarity=0.387 Sum_probs=244.1
Q ss_pred CCCCCCcchhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEe
Q 005123 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (713)
Q Consensus 60 ~~~~~~~~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 139 (713)
.+++|.+++.+.++. ....+......|+..+-+|+..+.+... -...+.
T Consensus 10 tl~gh~d~Vt~la~~----~~~~~~l~sasrDk~ii~W~L~~dd~~~---------------------------G~~~r~ 58 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIK----IKNSDILVSASRDKTIIVWKLTSDDIKY---------------------------GVPVRR 58 (315)
T ss_pred eecCCCceEEEEEee----cCCCceEEEcccceEEEEEEeccCcccc---------------------------Cceeee
Confidence 356666666553332 2233444455677888888876542100 113457
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+++|...|+.++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++....
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred eeeeeccC-CCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 220 VKANKSAH-KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 220 ~~~~~~~~-~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
........ .+.|+|+.|+|+ +.+|++++.|++|++||+++.+....+.+|...++.++++|||.++++|++||.+.+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 54444433 789999999998 688999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC---------CCCeEEEEEeCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---------RKDVTALAWHPFHE 367 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---------~~~V~sl~fsp~~~ 367 (713)
||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+.+.+++.+++.. .-...+++|+. ++
T Consensus 219 wdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 219 WDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred EEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CC
Confidence 9999999988776 788899999999977666665 445999999998887766421 22357889999 89
Q ss_pred CEEEEEECCCcEEEEEcC
Q 005123 368 EYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~ 385 (713)
..|++|-.|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=325.74 Aligned_cols=288 Identities=27% Similarity=0.482 Sum_probs=258.9
Q ss_pred EEeeCC-CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 137 HTSLNK-NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 137 ~~~l~~-H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+.+ |...|.|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|++|+++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344444 48999999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred Ec-CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 214 QN-NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 214 dl-~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|+ ..+..++++++|...|++++|+++++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 55588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCc--eEEEEccCCCC--eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe---EEEEEeCC
Q 005123 293 LVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPF 365 (713)
Q Consensus 293 ~I~IwDl~t~~--~~~~~~~h~~~--I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V---~sl~fsp~ 365 (713)
.|+|||+.++. ++..+..+... ++++.|++++++|++++.|+.+++||++.++.+..+.+|...+ .+...+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 99999999998 55666666555 9999999999999999999999999999999999999988753 3344455
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEEE----eCCcEEEEecC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCS----NDHTTKFWCRN 426 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~laS----~Dg~v~iWd~~ 426 (713)
++.++++++.|+.|++||+.+.. .+..+.+| ...|..++|++...++++ .|+.+++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~-~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGG-ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccc-hhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 78999999999999999998754 45555678 889999999999988876 58999999764
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=280.54 Aligned_cols=273 Identities=18% Similarity=0.313 Sum_probs=244.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEE
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDL 234 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l 234 (713)
-+|++++.|-+|++|...++.+.+++...++.|+.+.+.+|++.|++++. -.|++||+++++ .+.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37899999999999999999999999988999999999999999998885 679999999875 588899999999999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCC
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKN 313 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~ 313 (713)
.|..+|+.++++++||+++|||++...+.+.+. +...|++|..+|+...|++|..+|.|+|||+.+..+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666665 77999999999999999999999999999999876666553 3456
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCC------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.|.++...+||++|+.+...|.+++|++-+. +.+..|+.|.+.|..+.+|| +.++||++|.|.+++||++++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999999999999998653 45677889999999999999 8999999999999999999877
Q ss_pred CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCcc
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~ 432 (713)
.+....+.+|...+++++||.|+.+|++ .|+.+++|++...++..
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 5566677889999999999999988865 99999999997766544
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6e-35 Score=288.53 Aligned_cols=284 Identities=21% Similarity=0.425 Sum_probs=252.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC-CCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+.+|++.|+++.|+|+|.+||+|+.|..|.||++. ..+-...+++|.++|..+.|..|++.|++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 467999999999999999999999999999999944 4555677889999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++.++.++.|..-|+.+.-+.-|. ++++++.|+++++||+++.+.++++. ....++++.|..++..+++|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 999999999999999999776664 46788899999999999988887775 5578999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeeEEEeecCC----CCeEEEEEeCCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----MKELESFRGHR----KDVTALAWHPFHEE 368 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t----~~~l~~~~~h~----~~V~sl~fsp~~~~ 368 (713)
||++....+.++.+|...|+.+..+++|.++++-+.|.+|++||++- .+++..+.+|. .....++|+| +++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~ 279 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGT 279 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCC
Confidence 99999999999999999999999999999999999999999999984 34577777664 3567889999 899
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.+.+|+.|..+++||.... ..+-.+.+|.+.|++++|+|..-++. +.|.+|.+=.+
T Consensus 280 ~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999998544 45666778999999999999996664 58999887543
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.8e-37 Score=306.17 Aligned_cols=275 Identities=24% Similarity=0.463 Sum_probs=246.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
..+.|.|+.+. ...+++|..|++|+|||..+..+.+.+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++.+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 56789999984 557999999999999999999999999999999999999 56799999999999999999999999
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
++..|.+.|..+.|+ +.++++++.|.+|.+||+..... .+.+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999995 56999999999999999976543 35577899999999998 679999999999999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.+++.++++.+|...|.|+.+ .++++++|++|.+|++||+..|++++.+++|..-|.++.| +.+.|++|..||+|
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceE
Confidence 999999999999999999988 7899999999999999999999999999999999999999 56889999999999
Q ss_pred EEEEcCCCCce--------EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 380 FHWLVGHETPQ--------VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 380 ~Iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+|||+...... +.....|.+.|..+.|..-..+.++.|.+|.|||+.....
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99999765432 2334458899999999887666677999999999865443
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=306.77 Aligned_cols=340 Identities=21% Similarity=0.342 Sum_probs=284.5
Q ss_pred chhceeEEEEEeccCCCceeeccCccccccCccceeeeCCC----CCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEE
Q 005123 87 TVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNP----STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (713)
Q Consensus 87 ~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latg 162 (713)
++.+.+.+-+|..+.+.........+ .+........++. ...+..+....-++.....|+|.+|++..+.||+|
T Consensus 206 tvskdG~l~~W~~~~~P~~~~~~~kd--~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 206 TVSKDGALFVWTCDLRPPELDKAEKD--EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEecCceEEEEEecCCCccccccccc--ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 45677788899877543222221111 1111111111111 11222333344566667899999999999999999
Q ss_pred ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 163 s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
-.+|.+.||++....+++.+......|..++|+..|++|+.|+.. |.+.||++.+...+.+..+|...++++++++||.
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq 363 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ 363 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc
Confidence 999999999999999999999989999999999999999988765 8999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEE
Q 005123 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKW 320 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~f 320 (713)
++++|++||+|+|||..++-++.++..|.+.|+.+.|+..++.|++++.||+|+.||+...+..+++.. ......|++.
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998874 3345788899
Q ss_pred cCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 321 NQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 321 spdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
.+.|.++++|+.|. .|+||++.+|+.+..+.+|.++|.+++|++ .+..|+++|.|.+|++||+-.....++.+. +..
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~s 521 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRS 521 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-ecc
Confidence 88999999999887 699999999999999999999999999999 789999999999999999966655555553 467
Q ss_pred CeEEEEEcCCCcEEE--EeCCcEEEEecCCCCC
Q 005123 400 TVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGD 430 (713)
Q Consensus 400 ~V~~l~~spdg~~la--S~Dg~v~iWd~~~~~~ 430 (713)
.|..++|+|+|.-+| +.||.|.|||.+....
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 899999999997775 4999999999876544
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-33 Score=296.70 Aligned_cols=344 Identities=18% Similarity=0.360 Sum_probs=278.3
Q ss_pred cchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCC---------CceeeeEEE------EeeCCCCCceEEE
Q 005123 86 STVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS---------TSFAAKFVH------TSLNKNRCSINRV 150 (713)
Q Consensus 86 ~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~------~~l~~H~~~V~~v 150 (713)
.+-...+.+|+|+....+. +++.+.......+..+.|..+.. ..|...|+- -.+.+|...|+++
T Consensus 75 ASGD~sG~vRIWdtt~~~h-iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~ 153 (603)
T KOG0318|consen 75 ASGDVSGKVRIWDTTQKEH-ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSV 153 (603)
T ss_pred eecCCcCcEEEEeccCcce-eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeee
Confidence 3334556899999776432 22222222222333344443333 223333332 3588999999999
Q ss_pred EEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec---c
Q 005123 151 LWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS---A 226 (713)
Q Consensus 151 ~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~---~ 226 (713)
+|-+..- +++||+.|++|.+|+-.-.++..++..|..-|.|+.|+|||+++++++.||+|.|||-.+++.+..+. .
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred eccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 9999764 68999999999999999999999999999999999999999999999999999999999999988887 8
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-----------------------------------------
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----------------------------------------- 265 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~----------------------------------------- 265 (713)
|++.|.+|+|+||++.|++++.|.+++|||+.+.+++++
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 999999999999999999999999999999976654433
Q ss_pred --EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE-----------Ecc----------------------
Q 005123 266 --LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-----------FHG---------------------- 310 (713)
Q Consensus 266 --l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~-----------~~~---------------------- 310 (713)
+.+|...|+++..++++++|++|+.||.|.-||..++..-+. +..
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 246888999999999999999999999999999875432110 000
Q ss_pred -----C-------------------------------------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 311 -----H-------------------------------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 311 -----h-------------------------------------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+ .-...+++++++++.+++|+.|+.|+||.+.
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~ 473 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS 473 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec
Confidence 0 0124578899999999999999999999998
Q ss_pred CCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC
Q 005123 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH 418 (713)
Q Consensus 343 t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg 418 (713)
..+. ......|...|+++++|| ++.+||++...+.|.+||+.+.........-|...|.+++|+|+..++|+ .|.
T Consensus 474 g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 474 GDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred CCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence 6553 334567999999999999 89999999999999999998887766666679999999999999999986 999
Q ss_pred cEEEEecCCCCCc
Q 005123 419 TTKFWCRNRPGDT 431 (713)
Q Consensus 419 ~v~iWd~~~~~~~ 431 (713)
+|.||+++++.+.
T Consensus 553 ~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 553 NVIIYSVKKPAKH 565 (603)
T ss_pred eEEEEEccChhhh
Confidence 9999999988776
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=271.15 Aligned_cols=264 Identities=19% Similarity=0.340 Sum_probs=229.8
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+....+-|+.+.+++|++.||+++.- .|++||+.+.+ .+.++.+|++.|++|.|..||+.+++|++||+++|||++.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 34456679999999999999998865 79999998875 4889999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+.+.+ .+...|+++..+++...|++|..+|.|+|||+.+..+...+. .....|.++...+||++|+.+...|++++
T Consensus 115 ~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 115 LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence 6665555 567999999999999999999999999999998876655543 34568999999999999999999999999
Q ss_pred EECCCC------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 297 WDAKSG------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 297 wDl~t~------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|++-+. +.+.++..|.+.|..+.+|||+++||+++.|.+++||++++. +.-..+.+|...+..++||. ++.+
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Y 272 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEY 272 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccE
Confidence 998754 345677889999999999999999999999999999999987 55677889999999999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|++++.|+.+++||+..+++ +....+|.....|++.+
T Consensus 273 lvTassd~~~rlW~~~~~k~-v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKE-VRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEecCCCCceeecccccCce-eeecCCcccccEEEEee
Confidence 99999999999999987764 44555676666666653
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-34 Score=272.24 Aligned_cols=282 Identities=23% Similarity=0.362 Sum_probs=250.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|..|.+.|+++.|+-||++.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC--CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++..+.+.+|...|+.+.|+.+...+++++-|.+|++||.++ .+.+..+....+.|.+|.++ +..|++|+.||+++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 999999999999999999999999999999999999999975 45678888888999999998 67899999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE--EEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT--ALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~--sl~fsp~~~~~lasg 373 (713)
.||++.|+....+- ..+|+|++|++|++.+++++.|++|++.|-.+++.+..+++|...-. .++++. ....+++|
T Consensus 169 tydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSG 245 (307)
T ss_pred EEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEec
Confidence 99999988765554 56799999999999999999999999999999999999999986543 445665 67899999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCC-eEEEEEcCCC-cEEEEeCCcEEEEec
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNT-VWDLAWHPIG-YLLCSNDHTTKFWCR 425 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg-~~laS~Dg~v~iWd~ 425 (713)
++||.|++||+........ +..+... |.+|+++|.. .++...++.+.+|.-
T Consensus 246 SEDG~Vy~wdLvd~~~~sk-~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISK-LSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred cCCceEEEEEeccceeeee-eccCCceeEEeeecccCccceeEecCCceeceee
Confidence 9999999999977664444 4445555 8999999987 455557788888854
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=282.98 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=251.4
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..++.+|+.+|.+++.+|+.++++||+.|..-.||++.++.....+.+|+..|+++.|+.||.+||+|+.+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++.....+...-+.|.-+.|++.+..|++|+.||.|.+|.+.+....+.+.+|...+++=.|.|+|++++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99988888766778889999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccC---------------------------------------------------CC---CeEEEEEcC
Q 005123 297 WDAKSGRELCSFHGH---------------------------------------------------KN---MVLCVKWNQ 322 (713)
Q Consensus 297 wDl~t~~~~~~~~~h---------------------------------------------------~~---~I~si~fsp 322 (713)
||.+++..+.++... .. .|.++.|+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999998877665410 00 122233333
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 323 dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.=.+.|+|+.||+|.|||+...+..+.+. |...|+.+.|-+ ..+|++++.||.|++||.+++..+ ....+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~-~~y~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK-FTYTGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceE-EEEecCchhee
Confidence 44567889999999999999777655554 888899999976 678999999999999999998754 45568999999
Q ss_pred EEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 403 DLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 403 ~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
+++++++.+++++ .|++.+||+..
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999977754 99999999863
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.9e-33 Score=272.50 Aligned_cols=240 Identities=19% Similarity=0.342 Sum_probs=225.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
--...|..++|+|.|+++|+|+-|+...||++.+. +..+++.+|++.+.|+.|.. +..|++++.|.++.+||+
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI 173 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEc
Confidence 34568999999999999999999999999998865 45677899999999999986 678999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+++..+..+.+|...|.+|++++ +++.+++|+.|++.++||++.+..+..|.+|+..|++|+|.|+|.-|++|++|+++
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
++||+|..+.+..+.. ....|++++||..|++|++|..|.++.+||.-.++.+..+.+|+..|++|..++ ++.-+++
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~T 332 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVAT 332 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEe
Confidence 9999999988887753 345799999999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
||.|.+|+||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.7e-32 Score=325.35 Aligned_cols=283 Identities=17% Similarity=0.318 Sum_probs=240.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----c----eEEEEeccCCCEEEEEEccC-CCEEEEEeCCCc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----N----FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGA 209 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~----~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~ 209 (713)
.+..|.+.|++++|++++++||+|+.|+.|+|||..+. . ....+. +...|.+++|++. +++|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999999999999999999999997542 1 122222 4568999999874 689999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc-CCCCEEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH-PTKSLLVS 287 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s-pdg~~L~s 287 (713)
|+|||+.+++.+..+..|...|++++|++ ++.+|++++.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999999889999999999999996 7899999999999999999998888887744 679999995 47899999
Q ss_pred EeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeeEEEeecCCCCeEEE
Q 005123 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTAL 360 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t------~~~l~~~~~h~~~V~sl 360 (713)
|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++. .+.+..+.+|...+.++
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998866 466778899999999997 788999999999999999974 35678899999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE------------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI------------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~------------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+|++ ++.+|++|+.|+.|+||+.......... ...+...|.+++|++++..+++ .||.|+||++
T Consensus 715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999 6889999999999999998654322111 1234567999999999966654 8999999986
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=288.82 Aligned_cols=289 Identities=17% Similarity=0.350 Sum_probs=247.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+..|++.|+-+.||++|++||+++.|.+..||++.. .++.+++.+|...|..|.||||+++|++|+.|..+++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456889999999999999999999999999999998543 45688899999999999999999999999999999999
Q ss_pred EcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCC
Q 005123 214 QNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 214 dl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|+.+++....+.. +...+.+++|.+|+..+++|+.|++|..||+.... +....+ ..-.|.+++.+.||+++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999988776643 46789999999999999999999999999986543 333322 23569999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC--eEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--V~sl~fsp~~~~~ 369 (713)
..|++|+..+...+..+. ....|+++++|.|++++++.-.+..|.+||+...+.+..+.+|+.. |..-+|--.+..+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999999988766554444 5678999999999999999999999999999988889999998753 5555676656689
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE--EeCCcEEEEecCCC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la--S~Dg~v~iWd~~~~ 428 (713)
+++||+|+.|+||+..+++ .+..+.+|...|++++|+|.. ..+| ++||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999987766 566777999999999999987 4444 49999999987544
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-33 Score=288.98 Aligned_cols=286 Identities=20% Similarity=0.422 Sum_probs=251.9
Q ss_pred CCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCC--ceEE--EE------e----ccCCCEEEEEEccCCCEEEEEe
Q 005123 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF--NFEM--IL------Q----AHDHAIRSMVWSHNDNWMVSGD 205 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~--~~~~--~l------~----~h~~~V~sl~~spdg~~L~sgs 205 (713)
..|+..|.+++|+|-.. .|++++.|-..++|++... .... .+ . ..+..|++++|+.+|++||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999876 8999999999999997641 1111 11 1 1246799999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.||.++||+.. +..+.++..|++.|.+|.|+.+|++|++++.|+++.+||..+++....+..|...-.+|.|-. ...|
T Consensus 255 ~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F 332 (524)
T KOG0273|consen 255 EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEF 332 (524)
T ss_pred cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceE
Confidence 99999999864 566777889999999999999999999999999999999999999999988888778899975 4568
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
++++.|+.|+|+.+...+.+.++.+|.+.|.++.|++.+.+|++++.|++++||..........+..|...|..+.|+|+
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C--------CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 366 H--------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 366 ~--------~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+ +..|++++.|++|++||+..+... ..+..|...|.+|+|++++.++|+ .|+.|.||+.....
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 3 457999999999999999877754 445679999999999999999987 89999999885443
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-34 Score=286.94 Aligned_cols=247 Identities=26% Similarity=0.497 Sum_probs=235.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...|++|.+.|.+|+|+..|++||+++.|-.+++||..+ .++++.+.+|+..|.+++|-|.|++|+++++|.+|+.|++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC 222 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence 347899999999999999999999999998899999887 6778889999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-------------- 281 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-------------- 281 (713)
.++.++.++.+|.+.|..+..+.||.++++|+.|.+|++|-+.++++...++.|+-.|.|++|.|.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 282 -KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 282 -g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
+.++++++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++.+|++++|||+++.++.+++..|..-|+++
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 2489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEc
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.|+. +..++++|+-|-++++|..
T Consensus 383 Dfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 DFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCC-CCceEEeccccceeeeeec
Confidence 9998 6779999999999999974
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-33 Score=301.05 Aligned_cols=342 Identities=23% Similarity=0.387 Sum_probs=275.5
Q ss_pred eeccchhceeEEEEEeccCCCceeeccCcc-cccc-Cccc-----eeeeCCCCCce----eeeEEEEeeCCCCCceEEEE
Q 005123 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPA-AAID-MLPT-----VAYTDNPSTSF----AAKFVHTSLNKNRCSINRVL 151 (713)
Q Consensus 83 ~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~-~~~~-~~~~-----v~~~~~~~~~~----~~~~~~~~l~~H~~~V~~v~ 151 (713)
.|+-+.......+.|+..+.+....+.... ..++ .+.. +..-......+ ..-.+.+.+.|..+.|..++
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 355566667788899877655333332221 0011 1111 00111111111 12234456788899999999
Q ss_pred Ec-cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----eeeeecc
Q 005123 152 WT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSA 226 (713)
Q Consensus 152 ~s-pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~----~~~~~~~ 226 (713)
|- ++.++||+++..+.+++|++.+..+. .+.+|+..|.++....+|.+|++|+.|.++++|.++.+. ++....+
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 75 57799999999999999998887666 889999999999966678899999999999999885442 3445578
Q ss_pred CCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeE-----E----EEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 227 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE-----R----SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 227 ~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~-----~----~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
|...|.+++++..+ .+|+++|.|++|++|++...+.. . ....|...|+||+++|+.++|++|+.|.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 99999999997655 67999999999999999762221 1 22469999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
|++...+...++.+|+..|.|+.|++....+++++.|++|+||.+.+..++++|.+|+..|..+.|-. ++..|++++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
|.|+||+++++. +...+..|++.||+++.+++...++ +.|+.|.+|.-..
T Consensus 569 GliKlWnikt~e-C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNE-CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchh-hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999997766 4566778999999999999987555 5999999996433
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-33 Score=308.26 Aligned_cols=212 Identities=20% Similarity=0.419 Sum_probs=204.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.....+++.+|.++|..+.|+|+.++|+++++|++|++|.+.+..++..+++|...|.++.|+|.|-++|+++.|++.++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|..+.....+.+.+|.+.|.|+.|+|+..|+++||.|.+||+||+.++..++.|.+|.+.|.+|+|+|+|++|++|+.|+
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.|.|||+.+++.+..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999998753
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=295.01 Aligned_cols=290 Identities=22% Similarity=0.390 Sum_probs=253.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECC-CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~d-g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.-...+|..++|+..|++||.|+.. |.+.||+..+...+...++|...++++++++||.+|++|++||.|+|||..
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 3444556789999999999999998865 899999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceEEEEEcCCCCEEEEEeCCCc-E
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHPTKSLLVSGGKDSL-V 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~Dg~-I 294 (713)
++-+..++..|...|+.+.|+..++.+++++.||+|+.||+.+.+..+++.... ....||+.++.|.++++|+.|.. |
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 999999999999999999999999999999999999999999999988887543 45779999999999999988864 9
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
++|++.+|+.+-.+.+|.++|.+++|++++..|++++.|++|++||+-... .+.++. +...+++++|+| +++.|+++
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVa 538 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVA 538 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEE
Confidence 999999999999999999999999999999999999999999999997553 344444 778899999999 89999999
Q ss_pred ECCCcEEEEEcCCCCceEEE-------------------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 374 SLDGSIFHWLVGHETPQVEI-------------------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~-------------------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+.||.|.+||++.....-.+ ........+.|+++.||..+.+ ..+.|+||++...-
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99999999998654322111 1112357899999999966643 88999999985443
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-33 Score=295.13 Aligned_cols=290 Identities=22% Similarity=0.390 Sum_probs=259.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+++..+...|.||.|+|...+++++-.+|.|.|||.++...++.+...+-.|++..|-...+++++|++|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~ 295 (713)
.+.+..+..|.+.|++|+.+|..-+++++|+|-+|++||.+.. .+..++.+|...|.+|+|+| |.+.+++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999764 67889999999999999999 678999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
||.+.+..+..++++|...|+|++|-+ |.-+|++|++|.+|+|||..+..++.++.+|...|..+.|+| .-.+|++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEe
Confidence 999999999999999999999999987 446999999999999999999999999999999999999999 78899999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEEecCCCC
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iWd~~~~~ 429 (713)
++||+|+||+..+-+.. ..+.-.-+.||||+-......+ .+.|....+..+.+..
T Consensus 246 sEDGTvriWhs~Ty~lE-~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgree 301 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLE-KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREE 301 (794)
T ss_pred cCCccEEEecCcceehh-hhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCC
Confidence 99999999998665433 3333346789999987765444 4455555555554433
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=280.75 Aligned_cols=252 Identities=27% Similarity=0.486 Sum_probs=236.2
Q ss_pred CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEE
Q 005123 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 176 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iw 255 (713)
.++.+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.++.+..++.+|...|..++++....|++++++|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
|++..+.++.+.+|.+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.++.+.+-.-.+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
|++||++.++...++..|...|.+++.+| ....||+++.| .|+-|++..+..+.. +.+|+..|++++.+.|+.++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCceEEEc
Confidence 99999999999999999999999999999 78899999988 899999987765555 7789999999999999998877
Q ss_pred -eCCcEEEEecCCCCC
Q 005123 416 -NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~ 430 (713)
+.|.+.+||....-.
T Consensus 378 ~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHN 393 (460)
T ss_pred CCceEEEEEecCcCcc
Confidence 778999999866544
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.5e-34 Score=297.77 Aligned_cols=290 Identities=18% Similarity=0.372 Sum_probs=254.3
Q ss_pred eeeEEEEeeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 132 AAKFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 132 ~~~~~~~~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
..+.....+.+|+..|+++.|.+ .+.+|++++.|+.|+||++.. +++++++.+|...|.+++|+.+|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 34555678999999999999999 789999999999999999776 8899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
|++||+++|.++..+. ....++|+.|.+++ +.|++|+.|+.|+.||+++++.+..+..|.+.|..|.|-+++++++++
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999988874 45678999999999 889999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eeEEEeecCC--CCeEEEEE
Q 005123 289 GKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---KELESFRGHR--KDVTALAW 362 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~---~~l~~~~~h~--~~V~sl~f 362 (713)
++|++|+||+.+....+..+. .+.....||..+|+++++++-+.|+.|.||.+... ...+.|++|. +.-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999998876655432 23445778999999999999999999999997642 2345677775 45678999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEe
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWC 424 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd 424 (713)
|| ++++|++|+.||.+.+||.++.+ ++..+.+|+..+..+.|+|.. .+.|+.||.|++|+
T Consensus 441 Sp-DG~~l~SGdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SP-DGRTLCSGDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cC-CCCeEEeecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99 89999999999999999997655 566677899999999999865 33355999999996
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.6e-34 Score=291.29 Aligned_cols=247 Identities=27% Similarity=0.473 Sum_probs=227.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
+.+..|.+.|+++.|+.++.++++|+.+|.|++|+..-.. ++.+..| ...|++++|++++..++++++||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 3467899999999999999999999999999999976443 4445544 5999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+....+.+|.-.|.+++|+|...+|++++.|..|++||.+++.++.++..|...|..+.|++++++|+++++|..+++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
||+++.+.+.++++|+..|+++.|+| ...+|.+|+.||.|..|.+...+.+..+ .+|+..|++++|+| -+.+|++|+
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgs 369 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGS 369 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecC
Confidence 99999999999999999999999999 6778889999999999999866666555 47999999999999 799999999
Q ss_pred CCCcEEEEEcCC
Q 005123 375 LDGSIFHWLVGH 386 (713)
Q Consensus 375 ~DG~I~Iwd~~~ 386 (713)
.|.++++|.-..
T Consensus 370 nd~t~rfw~r~r 381 (464)
T KOG0284|consen 370 NDRTVRFWTRNR 381 (464)
T ss_pred CCcceeeeccCC
Confidence 999999997643
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=281.93 Aligned_cols=238 Identities=25% Similarity=0.462 Sum_probs=216.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|.||.++|.|+.|. .+.|++|++|.+|+|||.++++.+.++..|..+|..+.|+ +.++++++.|.+|.|||+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 3578999999999995 5699999999999999999999999999999999999996 57999999999999999886
Q ss_pred Cc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.. +...+.+|...|+.+.| +.++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+.|.+|
T Consensus 307 ps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntI 382 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 382 (499)
T ss_pred chHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceE
Confidence 54 44556789999999999 56799999999999999999999999999999999999987 8999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eEEEeecCCCCeEEEEEeCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l~~~~~h~~~V~sl~fsp~ 365 (713)
++||+..|++++.+++|..-|.||.| |.+.|++|+.||+|+|||+.++. ++..+..|.+.|..+.|
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--- 457 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--- 457 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---
Confidence 99999999999999999999999999 67889999999999999998653 34556678999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+...|++++.|.+|.|||+.++.
T Consensus 458 D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 458 DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cceEEEeccCCCeEEEEEcCCCC
Confidence 56789999999999999996654
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=291.39 Aligned_cols=290 Identities=22% Similarity=0.356 Sum_probs=259.4
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.-.-++.+|+..|+++++|.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.|||
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence 33457889999999999999987777766 458999999999999998764 899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----CeeE--------EEEccCCCceEEEEEcCC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEE--------RSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-----~~~~--------~~l~~h~~~V~sl~~spd 281 (713)
+.+...+.++.+|.+.|++++.++|+..+++++.|.+|++||+.- +... +++ ...+.|.|++++||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCC
Confidence 999999999999999999999999999999999999999999731 1111 112 24578999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
+++|+++--|++|+||-+++-+....+.+|.-+|.|+.+|+|++.++||+.|+.|+||-++-|.+-+.|-+|++.|.++.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
|.| ...++++++.|+.|+-||-.+-. .+..+.+|...|+|++.+++|.+++| .|.+||+|.....-.
T Consensus 600 F~P-~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred Ecc-cceeEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 999 88999999999999999975544 56667789999999999999977765 899999998766433
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-31 Score=270.71 Aligned_cols=280 Identities=24% Similarity=0.416 Sum_probs=244.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN---WMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~---~L~sgs~DG~I~vwdl~~~ 218 (713)
-|.+.|.+|... +++|++|++||.++|||.+ ++..+.+.+|.+.|.+++|.-.+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488899999888 7899999999999999975 678899999999999999865443 5999999999999998876
Q ss_pred cee----eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------------------------CeeEEEEccC
Q 005123 219 NVK----ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------------------------CQEERSLTGH 269 (713)
Q Consensus 219 ~~~----~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------------------------~~~~~~l~~h 269 (713)
+.. ....+|+..|.+++...++..+++++.|.+|+||+..+ ...+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 22348999999999999999999999999999999321 1234567789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---e
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---E 346 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---~ 346 (713)
...|.+|.|+. ...+++++.|.+|+.||+.++..+.++.. ...++|+++++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999997 67899999999999999999999888774 5669999999999999999999999999998753 3
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
...|.+|...|.++.|+|.+...|++++.|+++++||+++....+..+.+|.+.|.++.|+..+.++. +.|++|+|+.-
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 57889999999999999988999999999999999999998877777778999999999999876664 49999999965
Q ss_pred C
Q 005123 426 N 426 (713)
Q Consensus 426 ~ 426 (713)
.
T Consensus 418 ~ 418 (423)
T KOG0313|consen 418 S 418 (423)
T ss_pred c
Confidence 3
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=276.13 Aligned_cols=286 Identities=22% Similarity=0.350 Sum_probs=254.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--------eccCCCEEEEEEccCCCEEEEEeCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--------~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
.+..-.+.++-+.|..|||||++|++|+.||.|.|||..++++.+.+ .-++.+|.|++|+.|...|++|+.|
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 33344467778999999999999999999999999999998876543 3478899999999999999999999
Q ss_pred CcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 208 GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
|.|+||.++++.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.++++++.+++|.+.|+...|+.||..++
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 999999999999988886 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecC---CCCeEEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH---RKDVTAL 360 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---~~~V~sl 360 (713)
+++.||+|++|+.++.+++.+++. .+..|+++..-| +-..+++|...++|+|.++. +..+++|..- .+...++
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 999999999999999999988864 455688887776 56789999999999999987 7888887532 3557777
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
+.+| .+.++.+.++|+.++.|.+.+++ +...+..|+..|..++-+|...++|+ .||.+++|.
T Consensus 444 ~lSp-kGewiYcigED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSP-KGEWIYCIGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecC-CCcEEEEEccCcEEEEEEeecCc-eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 8899 89999999999999999997776 44556679999999999999999987 999999994
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=295.04 Aligned_cols=290 Identities=25% Similarity=0.425 Sum_probs=261.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+...+..|..++|+|..-+++++-.+|.|.+||..-+.++..+..|++.|+.|+|+++..++++|++|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+++.++.+|-+.|+.+.|+..--+|+++|+|-+|+||+..+.+++..+++|...|.|..|+|....++++|-|.+|+|||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc---------------------------e--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eE
Q 005123 299 AKSGR---------------------------E--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--EL 347 (713)
Q Consensus 299 l~t~~---------------------------~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l 347 (713)
+..-+ . ...+++|+..|+.++|+|.-.+|++|++|+.|++|.....+ .+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 85211 1 23457899999999999999999999999999999987544 46
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
.+.++|...|+++.|+| ..++|++.|+|++|+|||+.+.+.+..+.. ..+..|.|+.+|...++|. .|+-+.||.++
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 77889999999999999 899999999999999999977765555543 4578999999999988865 89999999887
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
+...
T Consensus 322 RErp 325 (1202)
T KOG0292|consen 322 RERP 325 (1202)
T ss_pred ccCc
Confidence 6544
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-30 Score=264.44 Aligned_cols=244 Identities=28% Similarity=0.497 Sum_probs=226.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+..|...|.++.|++++++|++++.||.|++||+.+.+.+..+..|...|.+++|+++++++++++.|+.|++||+++.
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 45678889999999999999999999999999999998888889999999999999999888888888999999999988
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+....+..|...|.+++|++++.++++++.|+.|++||+++.+.+..+..|...|.+++|+++++.|++++.|+.|++||
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 88888888889999999999998888888899999999998888888888888999999999999999999999999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
+++++.+..+..+...+.+++|++++.++++++.|+.|++||+++++.+..+..|...|.+++|++ ++.+|++++.||.
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 284 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCe
Confidence 999988888878888999999999988888888899999999999999999999999999999999 6889999999999
Q ss_pred EEEEE
Q 005123 379 IFHWL 383 (713)
Q Consensus 379 I~Iwd 383 (713)
|++|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 99996
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7e-32 Score=260.28 Aligned_cols=285 Identities=21% Similarity=0.379 Sum_probs=258.1
Q ss_pred eeCCCCCceEEEEEcc---CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTP---TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp---dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.-.+|..+|..++||+ +|-+|++++.|+.-.+-+.+++..+-++.+|.++|.+.++..+...-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4568999999999986 8889999999999999999999999999999999999999988888889999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
-++..+..+ .|+.-|.+++|+.|.++|++++.+..+||||+++.+ ....+.+|.+.|..+.|....+.|+++++|++|
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999888876 688899999999999999999999999999997754 467788999999999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++||.++++.+.++. .+..|+++.++.||++|.++ ..+.|++||.++...++.++ -...|.+..++| +..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccC-CCceEEecC
Confidence 999999999999987 67889999999999976665 45679999999999988887 456789999999 679999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+|..++.||..++..+.....+|-++|.|+.|+|||.+.++ .||+||||.....
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999999999998777767889999999999999988876 9999999987543
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-31 Score=292.97 Aligned_cols=249 Identities=27% Similarity=0.493 Sum_probs=228.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeC-CCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~-~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++.+|...|++++|++++++|++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 34456899999999999999999999999999999999 55688999999999999999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCc--eEEEEEcCCCCEEEEEeC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWD--VKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~--V~sl~~spdg~~L~sgs~ 290 (713)
+++++++..+..|...|++++|++++++|++++.|+.|+|||+.++. +...+..+... ++++.|++++++|++++.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999988 45666666655 999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCe---EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEEEEEeCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMV---LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHPFH 366 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I---~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp~~ 366 (713)
|+.|++||+++++.+..+..|...+ .+...+.++.++++|+.|+.|++||+.++..+..+.+| ...|..++|++ .
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~ 433 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-T 433 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-C
Confidence 9999999999999999998887753 34455778999999999999999999999999999999 88999999999 8
Q ss_pred CCEEEEEE--CCCcEEEEEcC
Q 005123 367 EEYFVSGS--LDGSIFHWLVG 385 (713)
Q Consensus 367 ~~~lasgs--~DG~I~Iwd~~ 385 (713)
..++++++ .|+.|++|..+
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 89999988 68899999753
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-29 Score=253.04 Aligned_cols=289 Identities=19% Similarity=0.292 Sum_probs=253.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~ 216 (713)
.+....+.|+++.|+.+|.+|++++.|..|+|||..+++.++++..++..|..++|....+.++.++. |.+|++.++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 34456789999999999999999999999999999999999999999999999999888888877766 8899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+++.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+... .-..++|+|+|-++|++.....|+|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999999999999999999999999977776665433 3346789999999999998889999
Q ss_pred EECCCC--ceEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe---EEEEEeCCCCC
Q 005123 297 WDAKSG--RELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPFHEE 368 (713)
Q Consensus 297 wDl~t~--~~~~~~~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V---~sl~fsp~~~~ 368 (713)
||+|+- ....++. ......+.|.||+||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+| ++.
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~ 245 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSK 245 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCc
Confidence 999974 2333333 346778999999999999999999999999999999999988776432 6788999 899
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+|++|+.||+|.+|+++++..+......+.+.+.++.|+|....+++.+..+.+|-.+..+.
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccccc
Confidence 99999999999999999888777766658899999999999999999999999998765443
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=2.2e-30 Score=252.37 Aligned_cols=287 Identities=17% Similarity=0.290 Sum_probs=245.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.|.+|..+|+-|.|+.+|++|++|+.|.++.||-..+++.+-++.+|.++|.|++.+.+.++|++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcC-------CCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~-------~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
+.+..++ ....|..+.|+.++++++.+.++ +.|.++|++ ..+....+..+.+.++.+.|.+.+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998874 57789999999999998887653 679999997 3455777778889999999999999999
Q ss_pred EEeCCCcEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 287 SGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
+|.+||.|.+||+++++.+ ...+.|...|+.+.+++|..++++++.|.+-++||.++.+.++++. ...+|++.+++|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL 242 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence 9999999999999998554 4557789999999999999999999999999999999999999988 6788999999995
Q ss_pred CCCEEEEEECCCc-EEEEEcCCC-----------CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 366 HEEYFVSGSLDGS-IFHWLVGHE-----------TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 366 ~~~~lasgs~DG~-I~Iwd~~~~-----------~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.+.+++.|+.+-. |.--+.+.+ .+.+....+|-++|++|+|+|+|...+| .||.|||.-++.
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 4444544444321 221111222 1223445679999999999999988887 999999986643
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=252.87 Aligned_cols=278 Identities=23% Similarity=0.411 Sum_probs=235.6
Q ss_pred EEEEEccC-CCEEEEEE-------CCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 148 NRVLWTPT-GRRLITGS-------QSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 148 ~~v~~spd-g~~Latgs-------~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.++.|||- .++||++. ..|++.|.++...+-+..+. .-++.+..++|+++. +.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778883 34454442 36889999986544444433 246789999999875 677889999999999965
Q ss_pred CC-ceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCc
Q 005123 217 MN-NVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSL 293 (713)
Q Consensus 217 ~~-~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~ 293 (713)
.. +.+..++.|+..|.++.|+.. +..+++++.|++|++||......+.++++|...|....|+| ..+++++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 43 567788999999999999874 45578889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++|||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++||+++.+ .+.++.+|.-.|..++|||....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997544445888999999999998 77889999999999999999765 57888999999999999998889999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEEE--eCCcEEEEec
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCS--NDHTTKFWCR 425 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg~v~iWd~ 425 (713)
+++.|-+++|||.......++....|+..|..+.|+.-. ..+|+ .|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999988888888888899999999999744 56665 9999999973
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.5e-31 Score=286.98 Aligned_cols=248 Identities=24% Similarity=0.374 Sum_probs=225.7
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~v 212 (713)
..+.+|++.|.+++...+|.+|++|+.|.++++|.+++ ..++....+|+..|.+|+++..+ .+|++++.|++|++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 36789999999999777889999999999999997633 33455678999999999998765 68889999999999
Q ss_pred EEcCCCc-----eee----eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 213 WQNNMNN-----VKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 213 wdl~~~~-----~~~----~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
|++...+ ... ....|...|++++++++.++||+||.|++.+||+++......++.+|...|.||.|++..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 9987622 111 2357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++++|.|++|+||.+.+..++++|.+|...|..+.|-.+++.|++++.||.|+||++++.+++.++..|.+.|++++.+
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ....++||+.||.|.+|.-.+
T Consensus 599 ~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 599 P-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred C-ccceeEecCCCeEEEEeecCc
Confidence 9 677999999999999996544
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=257.66 Aligned_cols=293 Identities=21% Similarity=0.386 Sum_probs=248.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------------------CceEEEEeccCCCEEEEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVW 194 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------------------~~~~~~l~~h~~~V~sl~~ 194 (713)
.+.....+..|+..+++.+|++||.++|||+.|..|+|.|++. .-.++++..|.+.|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3445567889999999999999999999999999999999761 1356778899999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE---ccC
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGH 269 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h 269 (713)
+|....|++++.|++|++||+......+.+ ......|.+|+|+|.|.+|++|.+..++++||+++.++...- ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999998765433332 234568999999999999999999999999999998876554 358
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
.+.|++|.+++.+++.+++++||.|+|||--+++++.++. .| ...|.+..|..+++||++.+.|..|++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8999999999999999999999999999999999998885 34 356999999999999999999999999999999999
Q ss_pred EEeecCCC-----CeEEEEEeCCCCCEEEEEEC-CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEEeCCc
Q 005123 348 ESFRGHRK-----DVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCSNDHT 419 (713)
Q Consensus 348 ~~~~~h~~-----~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS~Dg~ 419 (713)
.++.+-.. --+...|+. .+++++.-.+ .+.++-||.++..+...+..+|++.+..+.-+|.+ ++.|+.|..
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 98876421 134456776 5666555443 56899999999988888888999999999999988 566889999
Q ss_pred EEEEecC
Q 005123 420 TKFWCRN 426 (713)
Q Consensus 420 v~iWd~~ 426 (713)
+|+|...
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999753
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.4e-30 Score=248.02 Aligned_cols=272 Identities=17% Similarity=0.337 Sum_probs=244.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE--EEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~--~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwd 214 (713)
+.+.+|...|.+|+|+.+|.+|++|+.|+++.||+++..+... ...+|.+.|..++|++. .+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678899999999999999999999999999999988775544 34689999999999885 47889999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++.++....+....+.| .+.|+|++.++++++.|..|.+.|.++.+...... ....+..++|+-++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999988876655554 57899999999999999999999998877665554 55678899999888888888878999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.|...-+-+.+..+++|.....||.|+|+|+|||+|+.|..+.+||+...-+++.|..++-+|..|.||. ++++||++|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
+|..|-|=++.++..+.++. ++++...++|+|...+||
T Consensus 251 EDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred ccceEEeEecccCCeEEEee--ccCCceeEEecCCCceee
Confidence 99999999999998877765 588999999999998886
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=8e-30 Score=285.91 Aligned_cols=281 Identities=26% Similarity=0.390 Sum_probs=251.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+...|.|..|. .+++++++.|.+|++||..++..+.. +.+|.+.|.++++..-+++|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788999998 66899999999999999999998888 999999999999987789999999999999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
...+.+|.+.|.++.. ...++++|+.|.+|++||+.++..+..+.+|...|+++.++ +.++++|+.|++|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 9999999999999987 45678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
++++++++.+|...|.++.+... +++++|+.|++|++||+++. +++.++.+|..-|..+.+ .+++|++++.|++|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccE
Confidence 99999999999999999988654 89999999999999999999 999999999999988876 56899999999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCcc
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~ 432 (713)
++||..++.....+...|...|+++++.....+.++.|+++++||+.......
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 99999877755554433678999999984434445599999999986655443
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=246.15 Aligned_cols=239 Identities=23% Similarity=0.446 Sum_probs=208.8
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+|+..|++++|+|.|++||+++.|.++.||.-.. ++++.++.+|+..|.|++|+.+|++||++++|+.|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 37999999999999999999999999999998654 5678899999999999999999999999999999999998754
Q ss_pred ---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 ---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 ---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
++...+..|...|..+.|+|...+|++++.|++|++|+-. +.++..++.+|...|.+++|++.|..|++++.|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 4677789999999999999999999999999999999876 3467889999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------eeE-EEeecCCCCeEEEEEeCC
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KEL-ESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------~~l-~~~~~h~~~V~sl~fsp~ 365 (713)
+|+||-..+.- -..|...+..+.|. ...|++++.|+.|+||..... +.+ ..-..|...|++++|+|.
T Consensus 218 tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 218 TVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred ceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 99999866321 12367889999997 457999999999999976642 111 233568889999999996
Q ss_pred CCCEEEEEECCCcEEEEEcC
Q 005123 366 HEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~ 385 (713)
..++|+++++||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68999999999999999874
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.6e-30 Score=290.71 Aligned_cols=289 Identities=23% Similarity=0.411 Sum_probs=250.2
Q ss_pred CCCCCceEEEEEccCCCEEEEEE--CCCcEEEEeCCC------------CceEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGS--QSGEFTLWNGQS------------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs--~dg~V~Iwd~~t------------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
..+...|.+|+.++|+..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 33456799999999999999999 899999998432 2334566789999999999999999999999
Q ss_pred CCcEEEEEcCC------------------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc
Q 005123 207 GGAIKYWQNNM------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 207 DG~I~vwdl~~------------------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
|+.|.||+... .+.+..+.+|...|.+++|++++.+|++++.|++|.|||..+.+.+.++++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 135667789999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC------CCCeEEEEEcCCCCEEEEEEC----CCeEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTASK----DQIIKL 338 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h------~~~I~si~fspdg~~Latgs~----Dg~I~I 338 (713)
|...|..+.|+|-|++|++-+.|++|+||++.+....+.+..+ ...+..+.|||||.+|++... ..++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 9999999999999999999999999999998887777666543 345789999999999997642 347999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCC----C--------CC----EEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPF----H--------EE----YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~----~--------~~----~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.+-.+++.-..|-+|.+.+.+++|+|. . .+ .+|+|+.|++|.||........+.+.......|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 999999988999999999999999882 1 11 6889999999999999888877777777788999
Q ss_pred EEEEcCCCc--EEEEeCCcEEEEecCCCC
Q 005123 403 DLAWHPIGY--LLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 403 ~l~~spdg~--~laS~Dg~v~iWd~~~~~ 429 (713)
+++|++||. ++||.||+|.+..++..+
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999994 447899999999986543
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.9e-31 Score=268.32 Aligned_cols=282 Identities=21% Similarity=0.380 Sum_probs=249.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..+.|+++.|..+++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999999999999999999999977665 67778888899999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+......++.+|.+.|+++.|......+++++.|.+|++||+.+..+.+++. ..+.+.+|+.+ ...+++|..|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999888889999999999999999988877765 44567777776 56789999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~la 371 (713)
+||+++..++.....+. .|+++..+.++..|++++.|.++.++|+++.+....+... ...++.+.||| ++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceee
Confidence 99999999998887554 8999999999999999999999999999999888777542 24589999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEE--EeCCcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLC--SNDHTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~la--S~Dg~v~iWd 424 (713)
+||.||.|+||++.+++....+...+.. .|++++|++.|..+. +.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999888866666555555 799999999986664 4889999993
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=249.48 Aligned_cols=244 Identities=22% Similarity=0.363 Sum_probs=221.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~ 217 (713)
.+++|++.|..+.|..|++.|++++.|.+|+.||.++++.++.++.|.+.|+++.-+.-|. ++.+++.|++++|||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4569999999999999999999999999999999999999999999999999999665554 555889999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+.++++ ..+..++++.|..++..+++|+-|+.|++||+++.+....+.+|.+.|+.+..+++|.++++-+.|.+|++|
T Consensus 165 k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 165 KEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW 243 (338)
T ss_pred cchhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence 8887765 346789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC----CceEEEEccCC----CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 298 DAKS----GRELCSFHGHK----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 298 Dl~t----~~~~~~~~~h~----~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|++- .+++..+.++. .....++|+|+++++.+|+.|+.+++||..+...+..+.+|.+.|.+++|+| ...+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~i 322 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPI 322 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcE
Confidence 9984 34577776543 3456778999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEECCCcEEEEEc
Q 005123 370 FVSGSLDGSIFHWLV 384 (713)
Q Consensus 370 lasgs~DG~I~Iwd~ 384 (713)
|.+++.|.+|++=++
T Consensus 323 ils~~sdk~i~lgei 337 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeccCceeEeecc
Confidence 999999999987543
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4e-30 Score=268.37 Aligned_cols=246 Identities=16% Similarity=0.347 Sum_probs=220.5
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl 215 (713)
.+++.+|+..|.+++|+.+|..+++++.|+.|++||+++++++..+.. ...++|+.|.||+ +.+++|+.|+.|+.||+
T Consensus 251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 457889999999999999999999999999999999999999988874 6678999999999 88999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++++++..+..|-+.|..+.|-+++++++++++|++|+||+.+....+..+. .+....-||..+|+++++++-+.|+.|
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 9999999999999999999999999999999999999999998876655433 234567899999999999999999999
Q ss_pred EEEECCCCc---eEEEEccCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 295 KLWDAKSGR---ELCSFHGHK--NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 295 ~IwDl~t~~---~~~~~~~h~--~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
.||.+...- ..+.+++|. +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|+..+..+.|+|.....
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK 489 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence 999875422 233455654 456778999999999999999999999999999999999999999999999988889
Q ss_pred EEEEECCCcEEEEE
Q 005123 370 FVSGSLDGSIFHWL 383 (713)
Q Consensus 370 lasgs~DG~I~Iwd 383 (713)
+|+++.||.|++||
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=251.73 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=217.4
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+...+.+|+++|+|+.||.||.+||||+.+|.|+||+..++.....+...-..|.=+.|+|.+..|+.|+.||.|-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34568899999999999999999999999999999999999988888766778889999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---------------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------------------------- 268 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--------------------------- 268 (713)
.+....+.+.+|...+++=.|.++|++++++..||+|++||..++..+.++..
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 99888889999999999999999999999999999999999988876655431
Q ss_pred ------------------------CCCc---eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEc
Q 005123 269 ------------------------HGWD---VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321 (713)
Q Consensus 269 ------------------------h~~~---V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fs 321 (713)
+... |.++.|+..=.+.|+|+.||+|.|||+...+....+. |...|+.+.|-
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 0111 2223333344578899999999999999877666555 88889999998
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
. ..+|++++.||.|++||.|+|.++.++.+|...|.++++++ +.++++|+|.|++.+||++.
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 7 68999999999999999999999999999999999999999 89999999999999999874
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-29 Score=266.19 Aligned_cols=242 Identities=22% Similarity=0.340 Sum_probs=222.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
++.-..-+|++..|-...+++++|+.|..|+||+..+++.++.+..|.+.|+||+.+|...+++++++|-+|++||.+.+
T Consensus 50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 34445668889999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -ceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcE
Q 005123 219 -NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLV 294 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I 294 (713)
.+..++.+|...|.+++|+| |.+.+++++.|++|+||.+.+.....++.+|...|+||++.+. .-+|++|++|.+|
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 67888999999999999998 5588999999999999999999999999999999999999884 4599999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|||..+..|+.++++|...|+.++|+|.-.+|++|++||+++||...+.+...++.---..|++|+-.+ +.+.++.|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEec
Confidence 9999999999999999999999999999999999999999999999999888888877778899999888 677788888
Q ss_pred CCCcEEE
Q 005123 375 LDGSIFH 381 (713)
Q Consensus 375 ~DG~I~I 381 (713)
++|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 8776643
No 59
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.2e-28 Score=270.80 Aligned_cols=281 Identities=17% Similarity=0.221 Sum_probs=218.0
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-------------EEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-------------MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-------------~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~ 211 (713)
.|+....+.|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3445555556555666666665666654333221 24678999999999999 889999999999999
Q ss_pred EEEcCCCc-------eeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 212 YWQNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 212 vwdl~~~~-------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
|||+.++. .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99997652 456678899999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEccCCCC-eEEEEEcCCCCEEEEEE----CCCeEEEEECCCCee-EEEeecCC-CC
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESFRGHR-KD 356 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~-I~si~fspdg~~Latgs----~Dg~I~IwDl~t~~~-l~~~~~h~-~~ 356 (713)
+|++++.|++|+|||+++++.+..+..|... +..+.|.+++..|++++ .|+.|+|||+++... +..+..+. ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888764 45678998887777654 478999999987653 33333333 44
Q ss_pred eEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
+....|++ ++++|++++ .|+.|++||+.++.........+...+..++|.+...+=+..-...|+|.+..
T Consensus 262 ~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 262 LFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred eEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEecC
Confidence 55667888 677777776 59999999998776544444445667889999987544344555567777643
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=271.44 Aligned_cols=246 Identities=26% Similarity=0.461 Sum_probs=222.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+..|.++|+.|+|++++.++++|+.|-.|+||+.++.+++.++.+|-+.|+.+.|++.--+|+++++|-+|+||++.+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------------eeEEEEccC
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------------------------QEERSLTGH 269 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----------------------------~~~~~l~~h 269 (713)
+++..+.+|...|.|..|++.+..++++|.|-+|||||+..- .....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 999999999999999999999999999999999999998321 123456789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
...|+.++|+|.-.+|++|++|..|++|.....+ .+-+..+|.+.|+++-|+|..++|++.++|++|+|||+...+.+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999999999999999999999999987644 35567889999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+|+...+..+.++-+| ..+++++|- |+-+.||.++.
T Consensus 286 ~tfrrendRFW~laahP-~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHP-ELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred eeeeccCCeEEEEEecC-Ccceeeeec-CCceEEEEEcc
Confidence 99998888999999999 777777665 44555666643
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=258.43 Aligned_cols=250 Identities=18% Similarity=0.364 Sum_probs=218.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+..++.+|..+|..+.||||.++|++|+.|..+.+||+.++.+...+.. +...+.+++|.|||..+++|+.|+.|..||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 4568899999999999999999999999999999999999988877653 468899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++.+....-.......|.+++.+.||+++++.+.|..|++++.++......+. ....|++++++.|++++++.-.+..|
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred CCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCee
Confidence 98665332222233579999999999999999999999999998765554443 56789999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCC--eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNM--VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~--I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
.+||++..+.++++.+|+.. |..-+|-- +..++++|++|+.|+||+..+++.+.++.+|...|++++|+|.+...+|
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence 99999998889888888654 44445644 5689999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEEcCC
Q 005123 372 SGSLDGSIFHWLVGH 386 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~ 386 (713)
++++||+|+||....
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 999999999998754
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-29 Score=268.14 Aligned_cols=277 Identities=22% Similarity=0.375 Sum_probs=239.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
..+-++|+ ..+.||+|.. ..|++|+..+++.......++..|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 179 Y~nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hhhHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 34556788 4446666654 479999999998777777668999999999999999999999999999999999888888
Q ss_pred c-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 226 A-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 226 ~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
. |...|-+++|. +..+.+|+.|+.|.++|++..+.... +.+|...|..++|++|+++|++|+.|+.|.|||....+
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 99999999996 77899999999999999988766555 88899999999999999999999999999999998888
Q ss_pred eEEEEccCCCCeEEEEEcC-CCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcE
Q 005123 304 ELCSFHGHKNMVLCVKWNQ-NGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSI 379 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fsp-dg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I 379 (713)
.+..+..|.+.|..++|+| ...+||+|+ .|++|++||+.+++.+..+. ....|++|.|++...+++.+.+ .++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 8999999999999999999 677888764 79999999999999988876 5678999999995445555443 46789
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.||+..+.+ ....+.+|...|..++++||+..+++ .|.+++||++-..
T Consensus 414 ~lw~~ps~~-~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 TLWKYPSMK-LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEeccccc-eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999997744 56667789999999999999977765 9999999998554
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-27 Score=226.19 Aligned_cols=287 Identities=21% Similarity=0.386 Sum_probs=236.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------C---------ceEEEEeccCCCEEEEEEccCCCEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------F---------NFEMILQAHDHAIRSMVWSHNDNWM 201 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------~---------~~~~~l~~h~~~V~sl~~spdg~~L 201 (713)
...+......|++++|+|.|.+.++|+...+++|..... . ...+.-+.|.+.|.|.+|+++|.+|
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 334455667899999999999999999999998874221 1 1123345689999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCc-----eeeeeccCCCCeeEEEEecC----CCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCC
Q 005123 202 VSGDDGGAIKYWQNNMNN-----VKANKSAHKESVRDLSFCRT----DLKFCSCS-DDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-----~~~~~~~~~~~V~~l~fs~d----g~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
++|+.|.+|++..++... ....+.-|.+.|.+++|..+ +..|++++ .|..|++-|..+++....+.+|.+
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 999999999998665432 23345678999999999754 34566554 477888889999999999999999
Q ss_pred ceEEE-EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 272 DVKSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 272 ~V~sl-~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
-|.++ .|+ +-++++|+.|.+|++||++-..+++++.. ..+.|.+++..|.|++|++|-.|....+||++.
T Consensus 185 hilalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 185 HILALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred cEEEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 98876 454 88999999999999999999888887642 235799999999999999999999999999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC---CceEEEecccCCCeEEEEEcCCCcEEE--EeCC
Q 005123 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDH 418 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg 418 (713)
++.+..|..|...|.++.|+| +..++++++.|..|++-|+... ...+.+...|.+.+..+.|++..+-+. |.|.
T Consensus 263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999999999999999999999 8999999999999999998533 233445667899999999999885443 3999
Q ss_pred cEEEEecC
Q 005123 419 TTKFWCRN 426 (713)
Q Consensus 419 ~v~iWd~~ 426 (713)
++.+|.++
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999874
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=275.59 Aligned_cols=267 Identities=25% Similarity=0.365 Sum_probs=237.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..++...+.+|.+.|.++++..-+++|++|+.|.+++|||+.++.+..++.+|.+.|.++.. ...++++|+.|.+|+|
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEE
Confidence 44555669999999999999988899999999999999999999999999999999999987 4567888999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|+++++..+..+.+|...|+++.++ +.++++++.|++|+|||+.+++++..+.+|...|.++.+... ..+++|+.|+
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999999999998899999999996 889999999999999999999999999999999999988855 8999999999
Q ss_pred cEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEE
Q 005123 293 LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 293 ~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~l 370 (713)
+|++||+++. +++.++.+|...+.++.+ .+++|++++.|++|++||..++++++++.+ |...|+++++. ...+
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~i 467 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEI 467 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceE
Confidence 9999999999 999999999998877766 678999999999999999999999999998 67889998874 5789
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
++++.||++++||+++.......+.........+++...
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP 506 (537)
T ss_pred EEEecCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence 999999999999999887666554433344444444433
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=258.07 Aligned_cols=282 Identities=22% Similarity=0.307 Sum_probs=235.6
Q ss_pred CCCCceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
+..+.|++++|+|..-+ +|+.+ .-.|.||+..+....+.+......|.+++|..||++|++|+..|.|+|||+.+...
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 44568999999996543 33333 34699999999888888888899999999999999999999999999999888778
Q ss_pred eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwD 298 (713)
+..+.+|...|..+.|++.+ ..|++|++|+.+++||+.+......+.+|++.|.|.+|++. +.++++|+.||+|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 88899999999999999865 55778899999999999998887789999999999999995 55899999999999999
Q ss_pred CCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 299 AKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 299 l~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
+++. ..+.++. |...|.++.+-+.|..|++++. ..|+|||+.+|. .+..+..|...|+|+++.. ++..|++++-|
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD 259 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLD 259 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccc
Confidence 9987 5666665 8999999999999999998875 469999999654 4555556999999999998 78999999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
+.|+|||+.+-+ .+..+ ...++|.+|+.++++..++ + .||.+.+-+.....
T Consensus 260 ~~VKVfd~t~~K-vv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 260 RHVKVFDTTNYK-VVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cceEEEEccceE-EEEee-ecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999999975444 33333 2478999999999885554 4 88888777444333
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.2e-30 Score=258.25 Aligned_cols=285 Identities=21% Similarity=0.340 Sum_probs=243.1
Q ss_pred EeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..|.+|++.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4568999999999999987 8899999999999999999999999999999999999975 788899999999999877
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVK 295 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~ 295 (713)
.. .+.++ ..+..+..|.-+..++.+++|+.+ |.|||......+..+.-....|.++.|+|.. ..|++|..|+.|.
T Consensus 138 ~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 GP-PLHTI-LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred CC-cceee-eccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 64 33333 345667788888788889998874 9999999888999998888899999999954 4677777999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|||++++..+.++. ....-+.|+|+|.+-.|+++++|..++.||++..+ .+..+.+|.+.|.+++||| .+.-|++||
T Consensus 214 LyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Efvsgs 291 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGS 291 (433)
T ss_pred EEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhcccc
Confidence 99999999887765 34567889999988888899999999999999754 5788899999999999999 789999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.|.+|+||.++.....-......-..|.|+.|+-|..++.| +|+.|++|.-+..+.
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999997765443333333467999999999988765 999999998765443
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=244.27 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=251.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+.+.+|++.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45678899999999999988889999999999999999999999999999999999999999999999999999999961
Q ss_pred ------CC--------C--------------------------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEE
Q 005123 216 ------NM--------N--------------------------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 216 ------~~--------~--------------------------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iw 255 (713)
.. . ..+..+.+|...|.+..|...++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 0 0123356788889999999999999999999999999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
|+++++.+..+.+|....+.++-+|..+++++++.|.+.++||.+.. ..+..|.+|...|+++.|..|. .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999853 4567899999999999998765 589999999
Q ss_pred eEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc---eEEEecccCCCeEEEEEcCCC
Q 005123 335 IIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 335 ~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg 410 (713)
+|+|||+++.+. +.+++ .++.++.++.+. +..+|+.--++..|++||++.... ......+|...|+|++|..+.
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999998764 55555 678899999997 777888888888999999954331 122446799999999999765
Q ss_pred ----cEEEEeCCcEEEEecCCCC
Q 005123 411 ----YLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 411 ----~~laS~Dg~v~iWd~~~~~ 429 (713)
.+.|+.|..+.-|+++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 5557799999999997654
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2e-27 Score=284.67 Aligned_cols=261 Identities=19% Similarity=0.290 Sum_probs=220.7
Q ss_pred CCcEEEEeCCCCceEEEE-----eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--------eeeeeccCCCCe
Q 005123 165 SGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESV 231 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--------~~~~~~~~~~~V 231 (713)
+|.+++|+..+.+....+ ..|...|++++|++++++|++|+.|+.|+|||++... ....+ .+...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 677888988876654443 3488999999999999999999999999999975421 11222 235678
Q ss_pred eEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 232 RDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 232 ~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+++|++ ++.+|++++.|++|++||+.+++.+..+.+|...|++++|++ ++.+|++|+.|++|+|||+++++.+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 478999999999999999999999999999999999999996 78899999999999999999999888887
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 310 GHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 310 ~h~~~I~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
. ...|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 616 ~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 4 4679999995 479999999999999999998766 467788999999999997 4678999999999999999743
Q ss_pred -----CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 388 -----TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 388 -----~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
...+..+.+|...+.+++|++++.++++ .|+.|+||+.....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 2345567789999999999999987765 89999999976543
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=271.98 Aligned_cols=294 Identities=17% Similarity=0.258 Sum_probs=219.2
Q ss_pred ceeeeEEEEeeC-CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEE-------------EEc
Q 005123 130 SFAAKFVHTSLN-KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM-------------VWS 195 (713)
Q Consensus 130 ~~~~~~~~~~l~-~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl-------------~~s 195 (713)
.+........+. .|++.|+|+.||+||+|||+|+.|+.|+||.+...+... .+...-.++ .-+
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~ 328 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSS 328 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCccccc
Confidence 344555666777 999999999999999999999999999999976533311 111111111 111
Q ss_pred c---CCC--EEEEEeCCCcEEEEEcC----CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 196 H---NDN--WMVSGDDGGAIKYWQNN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 196 p---dg~--~L~sgs~DG~I~vwdl~----~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
. .++ ..-.+.....+ +.+.. ..+.+..+.+|...|.+|+|+. +.+|++++-|.+||+|++.+.+++..|
T Consensus 329 ~~~~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 329 EEKISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred cccccccccccccccCCccc-cCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE
Confidence 1 001 11122222222 22211 2355667889999999999995 458999999999999999999999998
Q ss_pred ccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 267 TGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 267 ~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
. |.+.|+||+|+| |.++|++|+-|++|+||++...+.+.- .....-|++++|.|||++.++|+.+|.+++|+++..+
T Consensus 407 ~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 407 S-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred e-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 7 999999999999 889999999999999999987665544 4455889999999999999999999999999999877
Q ss_pred eEEEee--cC------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-
Q 005123 346 ELESFR--GH------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 346 ~l~~~~--~h------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS- 415 (713)
....+. .| ...|+.+.|.+.+...|++.+.|..|+|||.++...+.++...+. ..-....|+.||.+|++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 654432 11 237999999986777788889999999999976654444433332 33456788899977754
Q ss_pred -eCCcEEEEecCCCCC
Q 005123 416 -NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~ 430 (713)
+|..|+||+++....
T Consensus 565 seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFNS 580 (712)
T ss_pred ecCceEEEEeCCCCcc
Confidence 999999999865543
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=243.03 Aligned_cols=246 Identities=22% Similarity=0.368 Sum_probs=224.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
-++.+|++.|++..++.+..+.|+++.|-+-+|||.-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 4678999999999999999999999999999999999998888776 888999999999999999999999999999987
Q ss_pred Cc-eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NN-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~-~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.+ ....+.+|.+.|..+.|+..++.|+++++|++||+||.++++.+.++. ....|+++.++.+|++|.++. .+.|.+
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~F 209 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKF 209 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEE
Confidence 54 456678999999999999999999999999999999999999999887 667899999999998776654 578999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
||.++...++.++ -...|.+.+++|+...+++|++|..++.||..+++.+..+ ++|-+.|.|+.|+| ++.+.++||+
T Consensus 210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSE 287 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSE 287 (334)
T ss_pred eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCC
Confidence 9999998888876 5567999999999999999999999999999999999986 89999999999999 8999999999
Q ss_pred CCcEEEEEcCCCC
Q 005123 376 DGSIFHWLVGHET 388 (713)
Q Consensus 376 DG~I~Iwd~~~~~ 388 (713)
||+|+||.+.-.+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999885443
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=233.40 Aligned_cols=249 Identities=21% Similarity=0.335 Sum_probs=217.3
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
....+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t--~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
++++.++.+.+|...|+.|.|+.+...+++|+.|.+|++||.++ .+.+..+......|.+|..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999986 45778888888899999984 668999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE--EEEEcCCCcEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW--DLAWHPIGYLL 413 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~--~l~~spdg~~l 413 (713)
++.||++.++....+- ..+|++++|++ +++.+++++.|++|++.|-.+++ ++....+|.+.-. +++++.....+
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGk-lL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGK-LLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhH-HHHHhcccccceeeeeeeecccceeE
Confidence 9999999998765554 45799999999 89999999999999999987776 4445556765433 34555555444
Q ss_pred E--EeCCcEEEEecCCCCCcc
Q 005123 414 C--SNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 414 a--S~Dg~v~iWd~~~~~~~~ 432 (713)
+ |+||.|.+||+.......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 3 499999999996655443
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9.3e-28 Score=247.35 Aligned_cols=281 Identities=21% Similarity=0.355 Sum_probs=249.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...|.++...+..+.++||+.|..+.++|..+...+..+.+|...|+.+.|+++...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 35688899988888999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
...|.+.|+.+..++.+.||+++++|++..+.|++++..+..... ..-.+++.+|+|||.+|.+|..|+.|+|||+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 889999999999999999999999999999999999988776654 334689999999999999999999999999999
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
...+..|.+|.+.|..|+|+.+|-||+++++|+.|++||+|..+...++...+ ..|.++.|.. .+.+|+.++.|=.|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEE
Confidence 99999999999999999999999999999999999999999988887776433 4699999998 899999998887777
Q ss_pred EEEcCCC-CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 381 HWLVGHE-TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 381 Iwd~~~~-~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+++-.+. ...+.....|.+..+++.|..+..++++ .|..++|+.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7774332 3344455567788999999999988875 8888888865
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8e-28 Score=249.92 Aligned_cols=275 Identities=21% Similarity=0.359 Sum_probs=238.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE----E-------------E-eccCCCEEEEEEccCCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I-------------L-QAHDHAIRSMVWSHNDN 199 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~----~-------------l-~~h~~~V~sl~~spdg~ 199 (713)
..+..|.-+|.||++++|++++++++.|++|.-|++.+++... . - +.|.+.|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999987766331 1 0 26788899999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
+|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|.+.|.+|...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999988899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-C-----
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H----- 353 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h----- 353 (713)
..++.+.+|+.|+++++|++.. +....+.++.+.+-|++|-. ...|++|+.||.|.+|++.+.+.+.+... |
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 8888888888999999999953 34445777888999999974 56799999999999999999888876642 2
Q ss_pred ------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCc-EEEE
Q 005123 354 ------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGY-LLCS 415 (713)
Q Consensus 354 ------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~-~laS 415 (713)
..+|++|+..+ +.+++++|+.+|.|++|.+..+...+.++.. -.+.|++|+|+.+|. ++++
T Consensus 374 ~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 23899999999 8999999999999999999888554443322 467899999999997 4454
No 74
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.6e-27 Score=264.54 Aligned_cols=263 Identities=15% Similarity=0.204 Sum_probs=205.5
Q ss_pred EECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCc--------eeeeeccCCCCee
Q 005123 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESVR 232 (713)
Q Consensus 162 gs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~--------~~~~~~~~~~~V~ 232 (713)
|+.++.|+||+......+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998888888899999999999999997 7899999999999999997642 2335678999999
Q ss_pred EEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC
Q 005123 233 DLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 233 ~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h 311 (713)
+++|++++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998876 5788999999999999988777775 5678999999999999999999999999999999999999988
Q ss_pred CCCeEE-----EEEcCCCCEEEEEECCC----eEEEEECCC-CeeEEEeecCCC-CeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 312 KNMVLC-----VKWNQNGNWVLTASKDQ----IIKLYDIRA-MKELESFRGHRK-DVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 312 ~~~I~s-----i~fspdg~~Latgs~Dg----~I~IwDl~t-~~~l~~~~~h~~-~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
.+.+.+ ..|++++++|++++.|+ .|+|||+++ .+.+..+..+.. .+....|.++++.+|++|+.|++|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876433 33567889999888764 799999995 455555432221 2222344454788999999999999
Q ss_pred EEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 381 Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+|++..+.........+...+.+++|.|+..+=+..-...|+|.+
T Consensus 289 ~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl 333 (568)
T PTZ00420 289 YYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGRVYKN 333 (568)
T ss_pred EEEccCCcEEeecccccCCCccceEEccccccCchhhhHhHHhhh
Confidence 999976532111122255778899999976433334444455554
No 75
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.8e-28 Score=251.39 Aligned_cols=282 Identities=17% Similarity=0.294 Sum_probs=241.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEec--cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.....|..-|.++.+|...++++||+. |.|+|||+..- ..+..+.. -+..|+++.+++||+.|++|++-.+|.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 345579999999999999999999985 67999997643 22333332 3567999999999999999999999999
Q ss_pred EEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+.... +...+....-.+.+|+.++|.+..++|+.||.|.|||+.+...++.|.+|.+.+.||.++.||..|.+|+-
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 9998654 34444444567888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|++|+.||+++++.+.... ..+.|.++.++|++.||++|-+++.+.|.... +.....+..|++.|.++.|.. .++++
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwf 648 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWF 648 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCcee
Confidence 9999999999998876654 66789999999999999999999999998876 444566777999999999999 89999
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++.+.|..+..|..--+..++.... .+.|.++.++-|.++|++ .|....||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999988777666554 678999999999988876 7778888865
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-27 Score=243.77 Aligned_cols=244 Identities=25% Similarity=0.425 Sum_probs=211.4
Q ss_pred EeeCCCCCceEEEEEccCCC---EEEEEECCCcEEEEeCCCCce----EEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 138 TSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~---~Latgs~dg~V~Iwd~~t~~~----~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..+.+|.+.|.+++|.-... .|++++.|.++++|..+.++. +....+|+..|.+|+...++..+++|+.|.+|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 46779999999998876544 499999999999998776543 34445999999999999999999999999999
Q ss_pred EEEEcCC-------------------------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 211 KYWQNNM-------------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 211 ~vwdl~~-------------------------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+||+.++ ...+..+.+|.+.|.++.|+. ...+++++.|.+|++||++++..+.+
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~ 296 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST 296 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee
Confidence 9998321 113445678999999999997 77899999999999999999998888
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl 341 (713)
+. ....++||+.++..++|++|+.|..|++||.+++. ....+.+|.+.|.++.|+|. ...|++++.|+++++||+
T Consensus 297 ~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 297 LT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 87 45679999999999999999999999999999754 34678899999999999995 456779999999999999
Q ss_pred CCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 342 RAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 342 ~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|+.+ .+..+.+|.+.|.++.|+. +.+|++|+.|.+|+|+.-.
T Consensus 376 RS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEeccc
Confidence 9887 8999999999999999984 7899999999999999753
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=238.13 Aligned_cols=242 Identities=23% Similarity=0.419 Sum_probs=213.0
Q ss_pred CCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 005123 143 NRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-.+.+..|+|+++. +.+++++.||+++|||+.. .+.+..++.|+..|.++.|+... ..+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45679999999964 6788999999999999543 45678889999999999998854 567788999999999999999
Q ss_pred eeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005123 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~Iw 297 (713)
.+.++.+|...|...+|++ ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 458899999999999999987555555888999999999998 66789999999999999
Q ss_pred ECCCCc-eEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGR-ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~-~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++-+ .+..+.+|.-.|..++|||. ..+|++++.|-+++|||.... ..+.+...|..-|..+.|+..+..++|+++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 999854 57788999999999999994 578899999999999998744 456677789999999999999999999999
Q ss_pred CCCcEEEEEc
Q 005123 375 LDGSIFHWLV 384 (713)
Q Consensus 375 ~DG~I~Iwd~ 384 (713)
.|..++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999983
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=258.15 Aligned_cols=283 Identities=22% Similarity=0.340 Sum_probs=243.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE--EEEeccCCCEEE-EEEcc-CCCEEEEEeCCCcEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQAHDHAIRS-MVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~--~~l~~h~~~V~s-l~~sp-dg~~L~sgs~DG~I~ 211 (713)
+...+.+|+..|..+++..+. .+++++.||+++||+-.....+ ..+.+|.+.|.+ +++.+ ++-.|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 456789999999999887555 7999999999999997655443 456678888877 88875 445699999999999
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+|.........++++|+..|++++...++. ++++|.|.++++|... ++...+.+|...|.+++..+++ .+++|+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999999887777 9999999999999764 4556689999999999999987 89999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
.+|++|.- ++.+++|.+|.+.|..+++-+++ .|++++.||.|++||+ +++++.++.+|..-|++++... ++..|+
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 99999975 78899999999999999998664 5889999999999999 6899999999999999999766 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCc
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
++++|++++||+.. .+...+......||++.+-.+|.++++ .||.||||..+.....
T Consensus 236 s~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccC
Confidence 99999999999976 445555545668999999988877765 9999999998755543
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=235.30 Aligned_cols=244 Identities=22% Similarity=0.358 Sum_probs=214.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~ 216 (713)
.+..|.++|+||+.+ +.++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456799999999995 89999999999999999999999999999999999999998765 89999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
...++..++.|...|+.|+++|.+++.++.+.|+.++.||+.+++.-..+. .....+.|.|++.|.+++.+..+ .|-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 999999999999999999999999999999999999999999887766554 23344559999999999988874 5999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC-CCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP-FHEEYFVSGSL 375 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp-~~~~~lasgs~ 375 (713)
|.+.+.+....+. ....+.|+.|- ++.+|++|.+|+.|++||.++..++..|.+|...|.++.+-. ....+|+++|.
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 9998877666554 33567888876 667899999999999999999999999999999999998532 25679999999
Q ss_pred CCcEEEEEcCCCC
Q 005123 376 DGSIFHWLVGHET 388 (713)
Q Consensus 376 DG~I~Iwd~~~~~ 388 (713)
||.|+|||++...
T Consensus 272 DG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 272 DGFIKVWDIDMET 284 (362)
T ss_pred CceEEEEEccccc
Confidence 9999999997764
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-27 Score=234.49 Aligned_cols=294 Identities=16% Similarity=0.265 Sum_probs=232.0
Q ss_pred CCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE--EE--EeccCCCEEEEEEccCCCEEEE
Q 005123 128 STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MI--LQAHDHAIRSMVWSHNDNWMVS 203 (713)
Q Consensus 128 ~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~--~~--l~~h~~~V~sl~~spdg~~L~s 203 (713)
...+...+....|++|++.|++++|+.||++|||++.|+.|+||++.+.... +. ....-+.-+.+.|++|.+.+++
T Consensus 70 q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 70 QPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred CCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 3445566666789999999999999999999999999999999998875321 11 1112235678999999887665
Q ss_pred E-eCCCcEEEEEcCCC---ce---------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 204 G-DDGGAIKYWQNNMN---NV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 204 g-s~DG~I~vwdl~~~---~~---------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
. -...++++|.+... .. ...-+.|...|.++-...++.+|++++.|.+|.+||++ ++.+..+....
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 4 45567999975422 11 11123456677778888889999999999999999998 88888888777
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-----ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---t~-----~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
..-...+++|+|++|++++..-.|++|.+- .| +.+..+++|.+.|..++||++.+.+++.+.||+++|||++
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 788889999999999999998999999863 22 2456788999999999999999999999999999999986
Q ss_pred CC-------eeEEEe----ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 343 AM-------KELESF----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 343 t~-------~~l~~~----~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
-. +.+++. ....+.-..++.+| ++..|+.+. ...|++|..++++..-.+...|...|.+|+|+++|+
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 32 122222 12234456899999 777776654 458999999888877788888999999999999999
Q ss_pred EEEE-eCCcEEEEe
Q 005123 412 LLCS-NDHTTKFWC 424 (713)
Q Consensus 412 ~laS-~Dg~v~iWd 424 (713)
++++ .|..++++.
T Consensus 387 ~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 387 YIATCGDRYVRVIR 400 (420)
T ss_pred EEeeecceeeeeec
Confidence 9998 999999985
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-27 Score=257.25 Aligned_cols=240 Identities=24% Similarity=0.468 Sum_probs=220.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
++.|+++.|+++|++|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.|+.|.++|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 88999999999999999999999999999999999999998 99999999997 7889999999999999999876554
Q ss_pred e-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEe--CCCcEEEEE
Q 005123 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG--KDSLVKLWD 298 (713)
Q Consensus 223 ~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs--~Dg~I~IwD 298 (713)
. +.+|...|+.++|++|+.+||+++.|+.|.|||....+.+..+..|...|..++|+| ...+||+|+ .|++|++||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 4 788999999999999999999999999999999988888999999999999999999 567888864 699999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEE--EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Lat--gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
+.+++.+..+. ..+.|++|.|++..+-|++ |..+..|.||+..+.+.+..+.+|...|..++++| ++..|++|+.|
T Consensus 375 ~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~D 452 (484)
T KOG0305|consen 375 TNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAAD 452 (484)
T ss_pred cCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEeccc
Confidence 99999988876 5678999999998876765 45677899999999999999999999999999999 79999999999
Q ss_pred CcEEEEEcCCC
Q 005123 377 GSIFHWLVGHE 387 (713)
Q Consensus 377 G~I~Iwd~~~~ 387 (713)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998654
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=247.25 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=224.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce----EEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF----EMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~----~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
...+.+|...|+++++.+.|.+|++|+.|-.|++||+..... .+.+ ......|+++.|++.++.|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 346889999999999999999999999999999999775332 2222 23456799999999999999988889999
Q ss_pred EEEcCCCceeee------------eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee-EEEEc-----cCCCc
Q 005123 212 YWQNNMNNVKAN------------KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWD 272 (713)
Q Consensus 212 vwdl~~~~~~~~------------~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-~~~l~-----~h~~~ 272 (713)
|+|-+....... .++|...++|.+|+|+. ..|++|+.||++||||+++.+. +..++ +..-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999765544332 25788899999999976 5689999999999999976543 22222 23456
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-e
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E 346 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~ 346 (713)
+++++|++|+++||+|+.||.|.+||..+... ...-.+|.. .|+||+||.||++|++-+.|+++++||++..+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999999865321 223345666 89999999999999999999999999999765 3
Q ss_pred EEEeecC--CCCeEEEEEeCCCCCEEEEEEC------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE-Ee
Q 005123 347 LESFRGH--RKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC-SN 416 (713)
Q Consensus 347 l~~~~~h--~~~V~sl~fsp~~~~~lasgs~------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la-S~ 416 (713)
+.++.+- ...-+.++||| +..+|++|+. .|++++||..+-..+.++.. ....|..+.|+|.- .+++ +.
T Consensus 400 L~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred hhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeecC
Confidence 4444432 23567899999 7889998864 56899999877665555543 47789999999975 3444 49
Q ss_pred CCcEEEEe
Q 005123 417 DHTTKFWC 424 (713)
Q Consensus 417 Dg~v~iWd 424 (713)
||+++||-
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 99999874
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=248.62 Aligned_cols=243 Identities=27% Similarity=0.414 Sum_probs=215.5
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~ 216 (713)
+++..-++.|.+++|-.||++||+|+..|.|+|||.++...++.+.+|...|..+.|++.++ .|++|++|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 34556788999999999999999999999999999888778888999999999999999765 56688888999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+..+...+.+|++.|.|.+|++-. ..+++|+.||+|++||++.. ..+.++. |...|.++.+.+.|..|++++. ..|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 998877889999999999999865 57899999999999999887 5566665 9999999999999999998875 679
Q ss_pred EEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 295 KLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 295 ~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+|||+.+|. .+..+..|...|+|+++..++..|++++-|+.|++||+.+.+.+..+. ..+.|.+++.++ ++..++.|
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEe
Confidence 999999654 455555599999999999999999999999999999999999998887 678999999999 78889999
Q ss_pred ECCCcEEEEEc
Q 005123 374 SLDGSIFHWLV 384 (713)
Q Consensus 374 s~DG~I~Iwd~ 384 (713)
-.||.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99999888754
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.2e-28 Score=259.17 Aligned_cols=277 Identities=23% Similarity=0.396 Sum_probs=238.3
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCc------eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--c
Q 005123 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--N 219 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~------~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~ 219 (713)
++..+. .+++|+||+.||.|++|+..... ....+..|.+.|+.++...+++.|++++.|-+|++|+.... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 333443 56789999999999999965432 35678889999999999999999999999999999998877 5
Q ss_pred eeeeeccCCCCeeEEEE-ecCCCEEEEEECCCeEEEEEcCCCee--EE--------EEc-cCCCceEEEEEcCCCCEEEE
Q 005123 220 VKANKSAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQE--ER--------SLT-GHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~f-s~dg~~Las~s~Dg~I~iwDl~~~~~--~~--------~l~-~h~~~V~sl~~spdg~~L~s 287 (713)
+..++..|.+.|.||++ ..+...+|+|+.|+.|.+||++++.. +. .+. ++...|.+++.++.+..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67778899999999999 77888999999999999999987632 21 222 67789999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+.++.|++||.++++.+.++.+|...|.++..+.||+.++++++||+|++||+...+++.++..|...|+++..++ +-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc--CCCcEEEEeCCcEEEEecCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH--PIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~laS~Dg~v~iWd~~~ 427 (713)
..+++|+.||.|..-|+++......+. ..+..|..+..+ .+..++++.|+.|+-|....
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 899999999999999998864443333 235567777766 45567888999999997643
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.4e-27 Score=254.63 Aligned_cols=242 Identities=28% Similarity=0.403 Sum_probs=224.3
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-----Cc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----NN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-----~~ 219 (713)
+-+.|..|.|.++++++|..+|.+.|||+.+...+.++..|++.|.+++.++|++.+++|+.|.+|++||... +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999998642 11
Q ss_pred eee-------eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 VKA-------NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ~~~-------~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
..+ ..-...+.|.|+++|||+++|+++-.|.+|+||-+++.+....+.+|.-+|.|+.+++|++++++|+.|.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 111 1123467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+|+||-++-|.|-+.+.+|...|.++.|-|+...+++++.|+.|+-||-...+.+..+.+|...|++++.++ ++.++++
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs 651 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVS 651 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEEcCCC
Q 005123 373 GSLDGSIFHWLVGHE 387 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~ 387 (713)
+|.|.+|++|.....
T Consensus 652 ~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 652 SSHDKSIRLWERTDE 666 (888)
T ss_pred ccCCceeEeeeccCc
Confidence 999999999987543
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=229.56 Aligned_cols=268 Identities=20% Similarity=0.273 Sum_probs=219.4
Q ss_pred CCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCC-ce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-NF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~-~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.-.+.|.+|+||| ...+|++++.|++||+|+++.. .. -+....|.+.|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 5566668999999999998873 32 2445678999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCC--EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~--~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
... .+..|...|..+.|-+... .|++||.|++|+.||.+....+.++. ..+.|.++..- ..+++++..+..|.+
T Consensus 105 Q~~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVS-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Cee-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 554 5578999999999987665 79999999999999999988888876 44567777665 568899999999999
Q ss_pred EECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eeEEEeecCCC---------CeEEEEEe
Q 005123 297 WDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRK---------DVTALAWH 363 (713)
Q Consensus 297 wDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~~l~~~~~h~~---------~V~sl~fs 363 (713)
|+++++....+. ...+-.+.||+...|....+.|+-+|.+.|..++.. +.-.+|+.|.. .|.+|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 999875433221 123456899999888888899999999999999876 55567777763 47889999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
| .-..|+|++.||++.+||.+...++. ....|...|++.+|+.+|.+++-
T Consensus 261 P-~hgtlvTaGsDGtf~FWDkdar~kLk-~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 261 P-VHGTLVTAGSDGTFSFWDKDARTKLK-TSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred c-ccceEEEecCCceEEEecchhhhhhh-ccCcCCCccceeEecCCCCEEEE
Confidence 9 66789999999999999986655443 33458899999999999988763
No 87
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=8e-26 Score=253.18 Aligned_cols=241 Identities=18% Similarity=0.297 Sum_probs=189.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeccCCCCeeEEEEec-CCCEEEEEECCCeEE
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVK 253 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~-------------~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~ 253 (713)
.|+....+.|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444444445555566655555556654333211 23568999999999999 888999999999999
Q ss_pred EEEcCCC-------eeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCC
Q 005123 254 VWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 254 iwDl~~~-------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~ 325 (713)
|||+.+. +.+..+.+|...|.+|+|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 9999764 2466788999999999999975 6999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecCCCC-eEEEEEeCCCCCEEEEEE----CCCcEEEEEcCCCCceEEEeccc-CC
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVSGS----LDGSIFHWLVGHETPQVEIHNVH-DN 399 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~-V~sl~fsp~~~~~lasgs----~DG~I~Iwd~~~~~~~~~~~~~h-~~ 399 (713)
+|++++.|++|+|||+++++.+.++..|... +..+.|.+ +...|++++ .|+.|++||+++..........+ ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 9999999999999999999999999888764 45778888 455565543 47899999998766555544333 34
Q ss_pred CeEEEEEcCCCcEE--EE-eCCcEEEEecCCCC
Q 005123 400 TVWDLAWHPIGYLL--CS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 400 ~V~~l~~spdg~~l--aS-~Dg~v~iWd~~~~~ 429 (713)
.+....|++++.++ ++ .|+.|++|++....
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 56667889998655 34 59999999997644
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-25 Score=223.72 Aligned_cols=264 Identities=21% Similarity=0.309 Sum_probs=222.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
++.|++|.|++.++.|++++.||++++||.....+...+. |..++.+++|.. ...+++|+.||.|+++|+++++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 5789999999999999999999999999998875555444 899999999984 6789999999999999999987655
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
+-.|...|.||.++.....+++|++|++|++||.+....+..+. ....|.++... ++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 45799999999999999999999999999999998755555554 44589998887 7899999999999999999866
Q ss_pred eEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eeEEEeecCCC---------CeEEEEEeCCCCC
Q 005123 304 ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRGHRK---------DVTALAWHPFHEE 368 (713)
Q Consensus 304 ~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----~~l~~~~~h~~---------~V~sl~fsp~~~~ 368 (713)
..... ...+-.+.||++-|++.=+++++-||.|.+=.++.. +....|+.|.. +|.+|+|+| --.
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccc
Confidence 54422 234567899999998888999999999998777765 45567777753 589999999 577
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
.||||+.||.|.+||+...+.+..+.. .+..|.+++|+.||..||.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAI 291 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEE
Confidence 899999999999999988776666554 3677999999999988875
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=236.16 Aligned_cols=242 Identities=19% Similarity=0.309 Sum_probs=222.2
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
+--+.+.|.|++||.|...||+|+.||.|+||.+.++.+++.+. .|...|+|+.|+.|+..+++++.|-+++|--+.++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 44578899999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEEEcC-CCCEEEEEeCCCcEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHP-TKSLLVSGGKDSLVK 295 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~~sp-dg~~L~sgs~Dg~I~ 295 (713)
++++.+++|.+.|+...|+.||.++++++.||+|+||+..+.+++.+++. ....|+++...| +-..+++|...++|+
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999888764 456788888887 446888999999999
Q ss_pred EEECCCCceEEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~~---h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|.++. |..++++.. ..+...+.++||.|.|+++.++|+.++.|.+.+++.-+++..|...|..++-+| ..++||+
T Consensus 419 imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 419 IMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred EEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhh
Confidence 99986 777777743 345567788999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
-++||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999994
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-26 Score=224.44 Aligned_cols=247 Identities=14% Similarity=0.232 Sum_probs=211.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-----CCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-----GGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-----DG~I~v 212 (713)
-++.+|++.|+|++.+.+.++|++|+.|.+++|||+++++.+..++. ...|..+.|+.+|++++.+.+ .+.|.+
T Consensus 46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 46889999999999999999999999999999999999999998874 788999999999999887754 377999
Q ss_pred EEcC-------CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCE
Q 005123 213 WQNN-------MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 213 wdl~-------~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~ 284 (713)
+|++ ..+....+..+.+.++.+.|.+-+++|++|.+||.|.+||+++++. +.....|...|+++.+++|..+
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 9987 3444666677889999999999999999999999999999999754 5555779999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe--------------EEEEECCCCeeEEEe
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI--------------IKLYDIRAMKELESF 350 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~--------------I~IwDl~t~~~l~~~ 350 (713)
+++++.|.+-++||.++.+.++++. ...+|++.+++|..++++.|+.... .++|++-..+++..+
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred EEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 9999999999999999999998887 5778999999997777776653221 223333334556778
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++|-++|++++|+| ++...++|++||.|++..++..
T Consensus 284 kGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 284 KGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccccCcceeEECC-CCcccccCCCCceEEEEEeccc
Confidence 89999999999999 8999999999999999877544
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-25 Score=222.70 Aligned_cols=266 Identities=19% Similarity=0.287 Sum_probs=220.2
Q ss_pred EEEEEECCCcEEEEeCCCC------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 158 RLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|++|++...|.=+++.-. ..+..+..|.+.|++++. ++.++++|+.|-+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3677777766666654321 124456789999999999 58999999999999999999999888899
Q ss_pred cCCCCeeEEEEecCCC--EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 226 AHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~--~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.|.+.|+++.|...-. .|++|++||.|.+||....+.+..+++|...|+.|+++|.+++.++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999988765 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.-..+. ....-+.|.|++.|.+++++..++ |-||.+.+.+....+.. ...+.++.|. ++..|++|.+|+.|.+||
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKD 235 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEec
Confidence 665554 233345599999999999888764 99999988776655543 3567788875 588999999999999999
Q ss_pred cCCCCceEEEecccCCCeEEEEEc--CCCcEEE--EeCCcEEEEecCCCCCc
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWH--PIGYLLC--SNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~la--S~Dg~v~iWd~~~~~~~ 431 (713)
.++. .....+.+|..+|.++.+- +++.+|+ |.||.|+|||++.....
T Consensus 236 ~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 236 TDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9774 4566677899999999854 4555664 59999999999876443
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.8e-26 Score=258.26 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=219.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------------------CceEEEEeccCCCEEEEEEccCCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVWSHNDN 199 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------------------~~~~~~l~~h~~~V~sl~~spdg~ 199 (713)
.....|.+.|+|+.|++||++||+|+.|+.|.||+... .+.+.++.+|+..|.+++|+|++.
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 35678999999999999999999999999999998662 246778899999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC------Cce
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG------WDV 273 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~------~~V 273 (713)
+|++++.|++|.|||..+.+.+..+++|...|..+.|.|-|++||+-++|++|+||++.+....+.+.++. ..+
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999988877777776543 357
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-----CC------------EEEEEEC
Q 005123 274 KSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GN------------WVLTASK 332 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-----g~------------~Latgs~ 332 (713)
..+.|+|||.+|++... -.++.|.+-.+.+.-..+.+|.+.+.+++|+|. .+ .+|+|+.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 89999999999998743 245889998888888899999999999999972 12 5779999
Q ss_pred CCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 333 DQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|++|.||.....+.+..+. .....|.+++|++ ++..|+++|.||+|.++.++.+
T Consensus 303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 9999999998877765543 3567899999999 8999999999999999998654
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.7e-26 Score=237.83 Aligned_cols=244 Identities=25% Similarity=0.465 Sum_probs=204.9
Q ss_pred eccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc----------eeeeeccCCCCeeEEEEecCC-CEEEEEECCC
Q 005123 183 QAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNN----------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDT 250 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~----------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg 250 (713)
..|.+.|+.+.+-|.. +++++.+..+.|.|||..... ....+.+|...-.+|+|+... -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4589999999998876 456677888999999976432 122567888878889998854 5689999999
Q ss_pred eEEEEEcCCCe-------eEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceEEEEccCCCCeEEEEE
Q 005123 251 TVKVWDFARCQ-------EERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 251 ~I~iwDl~~~~-------~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~--t~~~~~~~~~h~~~I~si~f 320 (713)
+|++||+.... ....+.+|...|..++|++ +..+|++++.|+.+.|||+| +.+......+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999996432 2456788999999999999 56689999999999999999 55666777889999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----------
Q 005123 321 NQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (713)
Q Consensus 321 sp-dg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---------- 388 (713)
+| ++..||+|+.|++|++||+|+.+ ++.++.+|...|..|.|+|....+||+++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 67788899999999999999864 5789999999999999999889999999999999999995432
Q ss_pred ---ceEEEecccCCCeEEEEEcCCCcE-EEE--eCCcEEEEecC
Q 005123 389 ---PQVEIHNVHDNTVWDLAWHPIGYL-LCS--NDHTTKFWCRN 426 (713)
Q Consensus 389 ---~~~~~~~~h~~~V~~l~~spdg~~-laS--~Dg~v~iWd~~ 426 (713)
.++.+..+|...|.++.|+|+.-+ +|| +|+.+.||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234677889999999999999844 455 99999999875
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.4e-26 Score=235.62 Aligned_cols=252 Identities=23% Similarity=0.452 Sum_probs=211.6
Q ss_pred eEEEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCc----------eEEEEeccCCCEEEEEEccCC-CEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFN----------FEMILQAHDHAIRSMVWSHND-NWM 201 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~----------~~~~l~~h~~~V~sl~~spdg-~~L 201 (713)
++.....-.|.+.|+.+.+-|.. ..||+.+..+.|+|||..+.. ...++.+|.+.-.+++|+... -+|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 44444556799999999999976 556677888999999966432 223788999888899999865 478
Q ss_pred EEEeCCCcEEEEEcCCCc-------eeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcC--CCeeEEEEccCCC
Q 005123 202 VSGDDGGAIKYWQNNMNN-------VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGW 271 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-------~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~--~~~~~~~l~~h~~ 271 (713)
++++.|+.|++||+.... ....+.+|...|.+++|++ +..+|+++++|+.+.|||++ +.+......+|..
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 899999999999987543 3456788999999999998 45678999999999999999 5566677788999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC----
Q 005123 272 DVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM---- 344 (713)
Q Consensus 272 ~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~---- 344 (713)
.|+|++|+| ++.+||+|+.|++|++||+|+ .+++.++.+|...|.+|.|||+ ...||+++.|+.+.|||+...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999999 667889999999999999998 4578889999999999999995 577889999999999999642
Q ss_pred ----------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 ----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ----------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.+..-.+|...|..+.|+|.....|++.++|+.+.||...
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466678999999999999878889999999999999974
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.7e-26 Score=243.29 Aligned_cols=324 Identities=19% Similarity=0.238 Sum_probs=244.5
Q ss_pred ccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEEC
Q 005123 85 TSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQ 164 (713)
Q Consensus 85 ~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~ 164 (713)
.+.+.....+-+|++....+........++...++.+...+ .+-|...--|+ |.+ .++||++
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--------------~nv~~~~~acl---p~~-cF~TCSs 400 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--------------CNVHSPTAACL---PRG-CFTTCSS 400 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--------------ccccCcccccC---Ccc-ceeEecC
Confidence 34455667889998765554433333333334444332211 01122221221 222 4899999
Q ss_pred CCcEEEEeCCCCceEEE-------------------------------------EeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 165 SGEFTLWNGQSFNFEMI-------------------------------------LQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~-------------------------------------l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
|++|+|||++.+....+ .......|++|+.+|++.+|++|+.-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 99999999775211000 01123468999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCC-
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTK- 282 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg- 282 (713)
|.|+||++...+....+..|+..|.||.|+. ..++|++++.|+.|.|||+... ..+.++.+|...|++|.|.-.|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 9999999999999999999999999999986 3477999999999999999654 5577889999999999998876
Q ss_pred -CEEEEEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---C
Q 005123 283 -SLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---H 353 (713)
Q Consensus 283 -~~L~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h 353 (713)
..+++++.|..|.+--.+.......+. ..+..+..++..|+.+++++++.|+.|+|||+.+++.++.|++ |
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 678899998877544333211122222 1245689999999999999999999999999999999999975 5
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCCC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~~ 428 (713)
++....+...| .+.||++.+.|.+|.|+|+.+++.... ..+|...|+.+.|.+|.+.|. +.|++|.||.+...
T Consensus 641 eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~-m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 641 EGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQ-MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhh-hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 67788999999 899999999999999999988775544 458999999999999986654 59999999998653
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=230.50 Aligned_cols=248 Identities=17% Similarity=0.281 Sum_probs=223.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
..|+++...+..+.+++|+.|..+.++|..++..+..+.+|...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888887789999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
..|...|+.+..++.|+||++++.|+++.+.|+++++.+..... ..-.+++++|+|||.+|.+|+.|+.|+|||+++.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877654 3346899999999999999999999999999999
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
..+..|.+|.+.|.+|+|+. ++.+||++++|+.|++||+++......+.......|.+++|+..|.+++.....|+||-
T Consensus 380 ~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 99999999999999999998 89999999999999999998877665555544557999999999999988788888887
Q ss_pred cCCCCCccccc
Q 005123 425 RNRPGDTARDK 435 (713)
Q Consensus 425 ~~~~~~~~~~~ 435 (713)
..+.....+..
T Consensus 459 ~~k~~k~W~~~ 469 (506)
T KOG0289|consen 459 CKKKTKSWTEI 469 (506)
T ss_pred Eecccccceee
Confidence 76555544443
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=235.46 Aligned_cols=241 Identities=19% Similarity=0.318 Sum_probs=214.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|.+..+.|++++|..+++++++++.|+.+++|++.......++.+|.+.|+++.|......+++|+.|.+|++||+.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 34677888899999999999999999999999999999999999999999999999999877779999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
...+.+++ ...+.+.+|+.+ ...++++..|++|++||+++.........+. .|+++..+.++..|++++.|.++.+
T Consensus 292 k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 292 KAYCSKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred hhheeccc-cccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence 87777665 345566777765 5678899999999999999998888887655 9999999999999999999999999
Q ss_pred EECCCCceEEEEccC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC--eEEEEEeCCCCCEE
Q 005123 297 WDAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEYF 370 (713)
Q Consensus 297 wDl~t~~~~~~~~~h----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--V~sl~fsp~~~~~l 370 (713)
+|+++.+....+... ....+.+.|||++.|+++|+.||.|+||++.++++...+...... |++++|++ .+..+
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~L 446 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGL 446 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchh
Confidence 999998877776532 234788999999999999999999999999999998888766554 99999999 89999
Q ss_pred EEEECCCcEEEE
Q 005123 371 VSGSLDGSIFHW 382 (713)
Q Consensus 371 asgs~DG~I~Iw 382 (713)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.6e-26 Score=245.63 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=252.7
Q ss_pred eccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEE
Q 005123 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS 163 (713)
Q Consensus 84 ~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs 163 (713)
|.-+-.|++.||+|+...-..... .. ...++..|.+.|+.++...+++.|++++
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s---------------------~~-----~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPS---------------------TP-----YIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred eEEecCCCceEEEeccccccCCcc---------------------cc-----hhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 555667889999997653210000 00 1224678999999999999999999999
Q ss_pred CCCcEEEEeCCCC--ceEEEEeccCCCEEEEEE-ccCCCEEEEEeCCCcEEEEEcCCCc--eee--------ee-ccCCC
Q 005123 164 QSGEFTLWNGQSF--NFEMILQAHDHAIRSMVW-SHNDNWMVSGDDGGAIKYWQNNMNN--VKA--------NK-SAHKE 229 (713)
Q Consensus 164 ~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~-spdg~~L~sgs~DG~I~vwdl~~~~--~~~--------~~-~~~~~ 229 (713)
.|-+|++|+.... -+..++..|++.|.|+++ ..+..++|+|+-|+.|.|||++++. .+. .+ .++..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999998877 567788999999999999 7788899999999999999999762 221 12 26788
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 230 SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.|.+++.++.+..|++|+.++.|++||.++++.+..+++|...|.++..+.||+.+++++.||+|++||+...+++.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.|...|+++..+++-.+|++|+.||.|+.=|+++......+...+..|..+..+. +.+-+-+++.|+.|+-|...-...
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~-~~~~~WvtTtds~I~rW~~~~~~~ 331 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE-HDNSVWVTTTDSSIKRWKLEPDIA 331 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc-ccCCceeeeccccceecCCccccc
Confidence 9999999999999999999999999999999998544444444567788888776 344457778899999996632110
Q ss_pred eE------EEecc-----------c------CCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 390 QV------EIHNV-----------H------DNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 390 ~~------~~~~~-----------h------~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+. ..... + ...|...+...|.+.+.+ .+|.+.+||+-+.
T Consensus 332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 00 00000 0 113344445566677776 7799999998543
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.1e-25 Score=244.56 Aligned_cols=265 Identities=19% Similarity=0.380 Sum_probs=228.4
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-.|+...+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++++|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368889999999999999999999999999997665 444444447778888776 56699999999999999999888
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.-..+....-.+++++|+-+|+++|.|++|-.|++.++.+...++.+++|...|.+|.|+|++++||+.+.||+|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcc--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCE
Q 005123 300 KSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 300 ~t~~~~~~~~~--------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~ 369 (713)
.++.+..++.+ ....+..++|+|++..|++.+.|+.|++|+..+++....++. +...++.+.|+| ++.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcE
Confidence 99887766542 134467789999988888889999999999999998877754 345599999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
||+++.||.|.|||+++-.. ......|++++|.++...+
T Consensus 247 iAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCee
Confidence 99999999999999977221 2235689999999988544
No 100
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.4e-24 Score=242.64 Aligned_cols=223 Identities=20% Similarity=0.340 Sum_probs=178.4
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCe--------eEEEEccCCCceE
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVK 274 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~--------~~~~l~~h~~~V~ 274 (713)
|+.++.|++|+......+..+.+|...|.+++|+++ +.+|++|+.|++|+|||+.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998887778888999999999999996 7899999999999999997532 2346778999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 275 sl~~spdg~~-L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
+|+|+|++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5788999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEE-----EEeCCCCCEEEEEECCC----cEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEE-E-eCCcE
Q 005123 354 RKDVTAL-----AWHPFHEEYFVSGSLDG----SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLC-S-NDHTT 420 (713)
Q Consensus 354 ~~~V~sl-----~fsp~~~~~lasgs~DG----~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~la-S-~Dg~v 420 (713)
.+.+.+. .|++ ++.+|++++.|+ .|+|||++.....+..... +.+.+.......++.+++ + .|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 8765433 3446 677888877764 7999999865444443322 223333333344565553 3 89999
Q ss_pred EEEecCCC
Q 005123 421 KFWCRNRP 428 (713)
Q Consensus 421 ~iWd~~~~ 428 (713)
++|++...
T Consensus 288 r~~e~~~~ 295 (568)
T PTZ00420 288 RYYQHSLG 295 (568)
T ss_pred EEEEccCC
Confidence 99999653
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=212.20 Aligned_cols=234 Identities=16% Similarity=0.332 Sum_probs=212.8
Q ss_pred eeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
...+|.+.|-.++|++. .+.|++++.|.+|++||...+++...+....+.| .++|+|+|+++++++.|..|.+.|.++
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDART 137 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecc
Confidence 45689999999999985 5789999999999999999999998887655555 689999999999999999999999998
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+..... .....+..++|+.+++.++.....|+|.|.....-+.+..+++|.....||+|+|+|++||+|+.|..+.+|
T Consensus 138 ~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 138 YKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 8776654 455678889999888888888888999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
|+..--+++.+..++-.|..|+||.||++||++++|..|-|=++.+|..+..+. +.+....++|+| ...+||-+++|
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 999999999999999999999999999999999999999999999999999988 788899999999 78888877765
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.9e-24 Score=201.06 Aligned_cols=252 Identities=24% Similarity=0.393 Sum_probs=211.0
Q ss_pred eeeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--c---eEEEEeccCCCEEEEEEccC----CCEEE
Q 005123 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--N---FEMILQAHDHAIRSMVWSHN----DNWMV 202 (713)
Q Consensus 132 ~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~---~~~~l~~h~~~V~sl~~spd----g~~L~ 202 (713)
....+.+..+.|+++|.|++|+++|.+|++|+.|.+|++.-.+.. + ...++.-|++.|..++|..+ +.+|+
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 344556677889999999999999999999999999998754432 2 23567789999999999654 35666
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceE
Q 005123 203 SGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVK 274 (713)
Q Consensus 203 sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~ 274 (713)
+++ .|..|++-|...+.-...+.+|.+.|.++ ++-++-.|++++.|.+|++||++-..++.++.. ..+.|.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 554 45667777888888888899999999876 334788999999999999999998877777642 235799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eeEEEe
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESF 350 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----~~l~~~ 350 (713)
++++.|.|++|++|-.|....+||++.++.+..+..|...|.|+.|||...|+++++.|..|++-|+... -.+...
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998631 123455
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..|+..+..+.|++ .+--|++.+.|.++.+|.+.
T Consensus 316 ~ehkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 67999999999999 67778899999999999763
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.3e-23 Score=220.98 Aligned_cols=271 Identities=10% Similarity=0.114 Sum_probs=206.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
++.+++++.|+.|++||+.+++.+..+..+. .+.+++|+++++.+ ++++.++.|++||+.+++....+..+ ..+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 3578899999999999999998888887654 46789999999877 46678899999999998877665543 345788
Q ss_pred EEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEccCC
Q 005123 235 SFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 235 ~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-~I~IwDl~t~~~~~~~~~h~ 312 (713)
+|+++++.++++ +.|+.|++||+.+.+.+..+. ....+.+++|+++++++++++.++ .+.+||.++++.+..+. ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 999999877655 568999999999887776665 234578899999999999988775 46778998887765543 23
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCC-------CCeEEEEEeCCCCCE-EEEEECCCcEEEEE
Q 005123 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEY-FVSGSLDGSIFHWL 383 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~-------~~V~sl~fsp~~~~~-lasgs~DG~I~Iwd 383 (713)
..+.+++|++++++|++++ .++.|++||+++++.+..+..+. .....++|++ ++++ +++.+.++.|.+||
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEE
Confidence 4567899999999886554 68999999999988777664321 1235688999 5555 45556677899999
Q ss_pred cCCCCceEEEecccCCCeEEEEEcCCCcEEEE---eCCcEEEEecCCCCCccc
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS---NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS---~Dg~v~iWd~~~~~~~~~ 433 (713)
+++.+....+ .+...+++++|++++.+|++ .++.|+|||++......+
T Consensus 236 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 236 AKTYEVLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCCCcEEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9765533322 23457999999999977653 589999999976544333
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.7e-26 Score=248.38 Aligned_cols=279 Identities=20% Similarity=0.373 Sum_probs=223.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEec---cCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQA---HDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~---h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
..+++|+.+++-..|+.++.. .++||.+... ++...+.. ....+..|+|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 446677777888888888755 5777765432 12222211 122355677864 45899999999999999998
Q ss_pred C---CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCC
Q 005123 217 M---NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKD 291 (713)
Q Consensus 217 ~---~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~D 291 (713)
. .+.+..+..|...|++++|+... .+|++|+.||+|++||++..+...++.+....|++|.|+| .+..|+++.+.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 56667788999999999999865 6789999999999999999999999988889999999999 67899999999
Q ss_pred CcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCC
Q 005123 292 SLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 292 g~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|.|.+||+|.. ++...+.+|.+.|.|+.|+|++.+||+|+.|+.|+|||..+.+.. .++. ....|.+|+|-|....
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccc
Confidence 99999999974 567788899999999999999999999999999999999865443 3332 4578999999997777
Q ss_pred EEEEEEC--CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEec
Q 005123 369 YFVSGSL--DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWCR 425 (713)
Q Consensus 369 ~lasgs~--DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd~ 425 (713)
.|++++. |-.|+|||++........+..|...++.++|.... .+.|+.|++|..-.+
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 8888765 77899999999998889999999999999998722 222446666554433
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=242.12 Aligned_cols=247 Identities=21% Similarity=0.383 Sum_probs=215.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC---CCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd---g~~L~sgs~DG~I~vwdl 215 (713)
++-+-+..|+|++.+|||++||+|..-|+|+|||+.+.+....+..|+..|.|+.|+.. .++|+++++|..|.|||+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 34456778999999999999999999999999999999999999999999999999863 478999999999999998
Q ss_pred CCC-ceeeeeccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEcc-----CCCceEEEEEcCCCCEEEE
Q 005123 216 NMN-NVKANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 216 ~~~-~~~~~~~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~s 287 (713)
..+ .++.++.+|...|+++.|..++ ..+++|+.|+.|.+--..+......+.. ....+.++++.|..+++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 755 5677888999999999998877 7789999998776543322111122221 2356889999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~---h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++.|.+|+|||+.+++.++.|++ |++....+...|.|.||++.+.|++|.++|..+++++....+|...|+.+.|.+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 99999999999999999999975 566788899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.|++.+.||.|.||.+..
T Consensus 694 -DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 -DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -cchhheeecCCceEEEEECch
Confidence 889999999999999999854
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.9e-25 Score=233.19 Aligned_cols=284 Identities=20% Similarity=0.310 Sum_probs=230.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE--EEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW--MVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~--L~sgs~DG~I~vwd 214 (713)
...+++|++.|+||...+.|.+|++|+.||+|+||.+.++.+++.+.. .+.|.||+|+|.++. ||++- +..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence 345789999999999999999999999999999999999999998874 679999999997753 33333 23343333
Q ss_pred cCCC-------------------------------------ceeeeeccCCCCeeEEEEecCCCEEEEEECC---CeEEE
Q 005123 215 NNMN-------------------------------------NVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVKV 254 (713)
Q Consensus 215 l~~~-------------------------------------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D---g~I~i 254 (713)
..-+ .-++....|...|+.+.|+..|.||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1111 0122334577889999999999999987654 57999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
.++.......-|....+.|.++.|+|...+|++++. ..|+|||+...+.++++.....+|.++++++.|..|++++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 999887766667667788999999999999998886 6799999999888888887888999999999999999999999
Q ss_pred eEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC--------CceEEEecccCCC----e
Q 005123 335 IIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--------TPQVEIHNVHDNT----V 401 (713)
Q Consensus 335 ~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~--------~~~~~~~~~h~~~----V 401 (713)
.+..||+.- .+..++++.|...|++++|++ .-.+|++|+.||++.||.-.-. -..++.+.+|... |
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 999999974 456788899999999999999 7889999999999999854211 1224556677654 9
Q ss_pred EEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 402 WDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 402 ~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.++.|+|..-+|.+ .|++|++|.
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeecccCCCceEEecCCCceEEeeC
Confidence 99999999977654 999999994
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-23 Score=206.74 Aligned_cols=255 Identities=16% Similarity=0.241 Sum_probs=212.2
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~i 254 (713)
+..+.+......|+++.|+.+|.+|++++.|.+|+|||..+++...++..++..|..++|....+.++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 444556666789999999999999999999999999999999999999999999999999888888877776 889999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
.++.+.+.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+..... ..++|.|+|-++|++....
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999998888776654333 4478999999999999888
Q ss_pred eEEEEECCCCe--eEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC---CeEEEEE
Q 005123 335 IIKLYDIRAMK--ELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN---TVWDLAW 406 (713)
Q Consensus 335 ~I~IwDl~t~~--~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~---~V~~l~~ 406 (713)
.|+|||+|+.. ...+|. ......+.|.||+ ++++|+.++..+.+++.|.-++... ..+..+.. .-.+.+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~-~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK-STFSGYPNAGNLPLSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe-eeEeeccCCCCcceeEEE
Confidence 99999999752 333443 3356789999999 8899999999999999998777633 33333332 2257789
Q ss_pred cCCCcEEEE--eCCcEEEEecCCCCCccccc
Q 005123 407 HPIGYLLCS--NDHTTKFWCRNRPGDTARDK 435 (713)
Q Consensus 407 spdg~~laS--~Dg~v~iWd~~~~~~~~~~~ 435 (713)
+||+.++.+ +||+|.+|+++......+..
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 999976643 88999999997766655443
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=210.37 Aligned_cols=249 Identities=21% Similarity=0.350 Sum_probs=208.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
.-..|++.|..+...--|++||||++|++|+|+..... +++.++.+|.+.|..++|.. -|++|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999989999999999999999997753 56889999999999999987 78999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCceEEEEEcCC---C-
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPT---K- 282 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spd---g- 282 (713)
.-+.+. .......|...|++++|.+. |-.|++++.||+|.|.++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 988774 33445679999999999885 467899999999999998654 234556789999999999985 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCC--ceEEEEccCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECCCCe-
Q 005123 283 ----------SLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN----GNWVLTASKDQIIKLYDIRAMK- 345 (713)
Q Consensus 283 ----------~~L~sgs~Dg~I~IwDl~t~--~~~~~~~~h~~~I~si~fspd----g~~Latgs~Dg~I~IwDl~t~~- 345 (713)
+.|++|+.|+.|+||+..++ +..+++.+|.+.|+.++|.|. ..+||+++.||+|.||..+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999998875 344568899999999999995 3679999999999999876321
Q ss_pred --eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 --ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 --~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
....++.....+..+.||. .+++|++++.|+.|.+|.-+...
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCC
Confidence 1223344567899999999 89999999999999999865443
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=223.39 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=221.7
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----ee-------------e-ccCCCCeeEEEEecCC
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK----AN-------------K-SAHKESVRDLSFCRTD 240 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~----~~-------------~-~~~~~~V~~l~fs~dg 240 (713)
...+..|...|.++++++|++++++++.|++|.-|++.+++.. .. - +.|...|.++++++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566789999999999999999999999999999998877532 11 0 2677889999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~f 320 (713)
++|++++.|..|.|||.++.+.+..+.+|.+.|.+++|-..-..|++++.|..|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988888999999999999999998889999999999999998
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC--
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-- 398 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-- 398 (713)
..-++.+-+|+.|+++++|++. .+....|.++.+.+-|++|- ++..|++||+||.|.+|++-+.+.+.....+|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8888888888899999999995 44455688899999999997 578899999999999999988877766655553
Q ss_pred ---------CCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCcccccc
Q 005123 399 ---------NTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTARDKF 436 (713)
Q Consensus 399 ---------~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~~~~~ 436 (713)
..|++|+..+...++|+ .+|+||+|.++..-......+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee
Confidence 27899999999988886 899999999977655444333
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-25 Score=243.54 Aligned_cols=250 Identities=24% Similarity=0.492 Sum_probs=224.0
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+++....+-.++|||.. .+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.+|.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 44555556677888865 345688888898887778999999999999999988877777789999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
.+..+|++|+.+|+|++||++..+.++++.+|...+.+|.|+|-+.+++.++.|+.+++||++...+...+.+|...|.+
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
+.|+|+|+|++.+++|.+++|||+..++.+.+|..|...|.++.|++ .+.++++|+.|++|++||+++-.. +......
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~-I~s~~~~ 237 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEV-ISSGKPE 237 (825)
T ss_pred EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEE-eeccCCc
Confidence 99999999999999999999999999999999999999999999999 889999999999999999975443 3333334
Q ss_pred CCCeEEEEEcCCCcEEEE
Q 005123 398 DNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS 415 (713)
...|.+++|++++..+.+
T Consensus 238 ~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 238 TDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cCCceeeeecCCceeeec
Confidence 678999999999987765
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=215.26 Aligned_cols=263 Identities=21% Similarity=0.358 Sum_probs=227.6
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
.|++.-.+++++ ..+++.+.+|.+.|..++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555555432 34567788999999999988777888899999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcC------C----------------------------------CeeEEEEccCCCceEEEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFA------R----------------------------------CQEERSLTGHGWDVKSVD 277 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~------~----------------------------------~~~~~~l~~h~~~V~sl~ 277 (713)
+.+.++++++.|++..||... . ...+..+++|...|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999620 0 012345678899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCC
Q 005123 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD 356 (713)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~ 356 (713)
|...++.+++++.|.+..+||+++++.+..+.+|+...+.++-+|..+++++.+.|-+.++||++. -..+..|.+|...
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984 3457889999999
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
|+++.|.- +..+++|++|.+|+|||+++-...+..+. .++.++.++++..+.+|+- ++..|++||++...
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999986 56799999999999999987766665554 3678999999999989987 78899999997544
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.6e-25 Score=216.56 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=206.7
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC------------C------ceeeeeccCCCCeeEEEEecCC
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM------------N------NVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~------------~------~~~~~~~~~~~~V~~l~fs~dg 240 (713)
...+..|+..+++.+|++||.++++|+.|..|+|+|++. + -+++++..|.+.|+++.|+|.+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345778999999999999999999999999999999761 1 2567788899999999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ccCCCCe
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMV 315 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~~I 315 (713)
..|++++.|++|++||+.+-...+.++ .....|.+|+|+|.|.+|++|.+..++++||+++.++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999997644333222 24568999999999999999999999999999998876654 3588899
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+++.+|+.+++.++++.||.|+|||--+.+++.++. .|. ..|++..|.. ++++|++.+.|..|++|.+.++..+...
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999999999999999999999999999999998885 455 5799999998 8999999999999999999988876665
Q ss_pred ecccC----CCeEEEEEcCCCcEEEE---eCCcEEEEecCCCCC
Q 005123 394 HNVHD----NTVWDLAWHPIGYLLCS---NDHTTKFWCRNRPGD 430 (713)
Q Consensus 394 ~~~h~----~~V~~l~~spdg~~laS---~Dg~v~iWd~~~~~~ 430 (713)
..+.. .--+...|+....++.. ..+.+.-||-.....
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 54311 12234456666655554 556777887654443
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=210.38 Aligned_cols=250 Identities=21% Similarity=0.385 Sum_probs=207.2
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC---ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEE
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwD 256 (713)
-..|++.|.++...-.|++|++++.|++|+|+.++.+ +.+.++.+|.+.|..++|.. -|.+||+|+.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3568888988888888999999999999999998865 46788899999999999986 899999999999999999
Q ss_pred cCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeEEEEEcCC---C--
Q 005123 257 FARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQN---G-- 324 (713)
Q Consensus 257 l~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~si~fspd---g-- 324 (713)
-++++ .......|...|++|+|.|. |-.|++++.||+|.|++.++. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87763 24456679999999999984 568999999999999988764 223445678899999999985 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEEEEcCCCCce
Q 005123 325 ---------NWVLTASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 325 ---------~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
+.|++|+.|..|+||+..+++ .-+++.+|.+.|+.++|.|.. ..+||+++.||+|.||..+.+...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 669999999999999998753 335589999999999999943 358999999999999988744332
Q ss_pred --EEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 391 --VEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 391 --~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
..++......++.+.|+..|.+|+. .|+.|.+|.-+..++-
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 2344445678999999999988864 9999999987666543
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=225.09 Aligned_cols=280 Identities=19% Similarity=0.317 Sum_probs=231.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-ceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
--..|+|+||+.+.+.||++-.||.|.||++... -+...+.++ ++.|.+++|+ ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 3468999999999999999999999999998764 344556655 5679999999 677888888999999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE--EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~--~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+..+....+.|++++.++.++.++++++||.+..+++..++.. +.+...++.|.+|+|++++..|+.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 9999999999999999999999999999998888888776654 34455678999999999999999999999999999
Q ss_pred CCCCceEEEEc--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 299 AKSGRELCSFH--------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 299 l~t~~~~~~~~--------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.++..+.... ....-|+++.|-.+ ..|++|.+.|+|.+||...+..+..+..|.+.|.+++... +++.+
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRV 260 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeE
Confidence 99988776321 12334777777755 4699999999999999999999999999999999999998 78999
Q ss_pred EEEECCCcEEEEEcCCCCc---eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 371 VSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
++++.|+.|..|....... .......|...|.+++..++-.+.++.|.++.|-..
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccc
Confidence 9999999999998866644 233445677888888888773222336666665443
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.1e-24 Score=230.84 Aligned_cols=237 Identities=17% Similarity=0.316 Sum_probs=207.2
Q ss_pred eeCCCCCceEE-EEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINR-VLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~-v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+|.+-|.+ ++|-+ ++-+|++|+.|.+|.+|.........++.+|+..|.|++...++. |++|+.|.+++||...
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 35567777777 88875 455699999999999999999999999999999999999887777 9999999999999654
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++...+.+|...|+++++.+++ .+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++|+.||.|++
T Consensus 131 --~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 131 --ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRL 204 (745)
T ss_pred --hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEE
Confidence 4455588999999999999887 8999999999999975 67889999999999999999764 5889999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+ +++++.+..+|.+.|.+++...++..|+++++|++++||+.. ++...+......|+++.+-. +++ |++|++|
T Consensus 205 w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~SD 279 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVGGSD 279 (745)
T ss_pred Eec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEeccC
Confidence 999 689999999999999999988888899999999999999987 77777776667899998876 444 7888899
Q ss_pred CcEEEEEcCCC
Q 005123 377 GSIFHWLVGHE 387 (713)
Q Consensus 377 G~I~Iwd~~~~ 387 (713)
|.|+||..+..
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999988643
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.2e-24 Score=211.44 Aligned_cols=281 Identities=15% Similarity=0.295 Sum_probs=218.4
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
-.|+.|++.|.+||+|+.||.|.|||..|...-+.+.+|-..|++++||+||+.|++++.|..|++||+..+.....+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999977765 4
Q ss_pred CCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 227 HKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
..+.|+.+.|++.... ++++--+..-.+.++...+....-... .....+..|++.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 6889999999985533 333333444455555442221111111 11223446889999999999999999999999
Q ss_pred CceEEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE---------EEee--cCCCCeEEEEEeCCCCCE
Q 005123 302 GRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---------ESFR--GHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 302 ~~~~~~~~~h~-~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l---------~~~~--~h~~~V~sl~fsp~~~~~ 369 (713)
.+++..++... ..|..|.|+..|++|++-+.|+.||.|+++..... +.+. ..+..-.+++|+. ++.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccE
Confidence 99998887655 78999999999999999999999999998732111 1111 0122345788888 6666
Q ss_pred EEEEEC-CCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 370 FVSGSL-DGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 370 lasgs~-DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
+++++. ...++||....+. +++++.+.+ ....++.|++-.-+++| ..|.|+||.......
T Consensus 264 v~a~s~~aHaLYIWE~~~Gs-LVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGS-LVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred EEeccccceeEEEEecCCcc-eeeeecCCchhheeecccccceeeeeeccCCceEEEEeecccc
Confidence 666553 5579999987776 455555555 67889999999999998 899999999765544
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.4e-23 Score=227.33 Aligned_cols=366 Identities=19% Similarity=0.330 Sum_probs=265.1
Q ss_pred CCCCCCCCcchhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccc--eeeeCCCCCceeeeE
Q 005123 58 NPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT--VAYTDNPSTSFAAKF 135 (713)
Q Consensus 58 ~~~~~~~~~~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~ 135 (713)
-..+++|.|.++.-.++.... ..-+..+...+..||+|++.-.+... ....+.....+.. +....+.. . -...
T Consensus 184 v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~~~~f~~l~~i-~-~~is 258 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSNLPVFMILEEI-Q-YRIS 258 (764)
T ss_pred EEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccCCceeeeeeeE-E-EEEe
Confidence 345788999988877766554 22234455577889999865433111 0000001111110 00000000 0 0111
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEE-----eccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
++.-+.||.+.|.++.|++++..|++++.|.++.||.-.+. --+... .+........-|+++++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 22445699999999999999999999999999999975543 222222 23345578899999999999999999
Q ss_pred cEEEEEcCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----eeEEEEccCCCceEEEEEcCC
Q 005123 209 AIKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----QEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 209 ~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----~~~~~l~~h~~~V~sl~~spd 281 (713)
-.++|..... .....+.+|.+.|++++|.+.|.+|++.+.|-+-|+|---.. ..+..-..|...++|+++-..
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983332 234455789999999999999999999999999999864311 223333458889999999986
Q ss_pred CCEEEEEeCCCcEEEEECCC-------------------------------------------Cce--------------
Q 005123 282 KSLLVSGGKDSLVKLWDAKS-------------------------------------------GRE-------------- 304 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t-------------------------------------------~~~-------------- 304 (713)
...+++|.++..+|+|+.-. |..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888899987520 000
Q ss_pred -------------------EEEEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 305 -------------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 305 -------------------~~~~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
+.++.+|...|.+++.++++++||+++... .|+||+..+...+..+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 112235677899999999999999988644 69999999999999999999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~ 429 (713)
+||+ ++++|++.|.|.++.+|........ ......|+.-|+++.|+|++.++ ||.|.+|+||......
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999 8999999999999999998543322 23467799999999999999755 4599999999987663
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.1e-25 Score=244.36 Aligned_cols=236 Identities=22% Similarity=0.406 Sum_probs=221.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+..|...|.|+..-..++.+++|+.|..+-||.+.....+..+.+|+..|.||.|+.+..+|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34578888899887788999999999999999999888888899999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.++++.+|...+..+.|+|-+.+++.++.|+.+++||++...+...+.+|...|.++.|+|+|++++++++|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
..|+.+..|+.|...+.++.|++..-+++.|+.|++|++||+++.+.+...+.....|.+++|++ ++..+++|..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 99999999999999999999999999999999999999999999999988888888999999999 77777777655
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-24 Score=225.11 Aligned_cols=241 Identities=20% Similarity=0.311 Sum_probs=207.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-------
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN------- 216 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~------- 216 (713)
-+.|.|++-+++|.+|+.|+..|.|++|.+.+++++..+..|-..|+|+.|+-|+.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 217 --MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 217 --~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+-+....+..|.-.|+++..... ..+|++++.|.+|++||+..+..+.++. ....+.+++++|.++.+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 23466778899999999998765 4679999999999999999998888876 667899999999999999999999
Q ss_pred cEEEEECCCC----------------ceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 293 LVKLWDAKSG----------------RELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 293 ~I~IwDl~t~----------------~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|.+.++.+. ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999887532 23455677877 99999999999999999999999999999999999888778
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.|+.+.+.+.....+..-...-.+-+|++.
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHhh
Confidence 8999999977544444444444456666653
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=224.24 Aligned_cols=241 Identities=17% Similarity=0.287 Sum_probs=196.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE------------EeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI------------LQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~------------l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
....|+++.|++.|+.|++.+.....+|+|-...+.... .++|...++|.+|+|+. ..+++++.||+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 455799999999999999999999999999776655433 35788899999999976 57889999999
Q ss_pred EEEEEcCCCcee-eee-----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCC--ceEEEEE
Q 005123 210 IKYWQNNMNNVK-ANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGW--DVKSVDW 278 (713)
Q Consensus 210 I~vwdl~~~~~~-~~~-----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~--~V~sl~~ 278 (713)
++|||++..+.. ..+ .+..-.++.++|++|++.||+|+.||.|.+||..+... ...-.+|.. .|+||+|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 999999865422 111 12344689999999999999999999999999754322 233456766 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc-eEEEEccC--CCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeeEEE
Q 005123 279 HPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFHGH--KNMVLCVKWNQNGNWVLTASK------DQIIKLYDIRAMKELES 349 (713)
Q Consensus 279 spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h--~~~I~si~fspdg~~Latgs~------Dg~I~IwDl~t~~~l~~ 349 (713)
+.||++|++-+.|+++++||++..+ ++....+. ...-+.++|||+.++|++|+. .+++.+||..+.+.+..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999999999999999999999854 44444332 334678899999999999863 56899999999999999
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...+..|..+.|+| .-+.|++++.||+++||--
T Consensus 453 i~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 988889999999999 7788888899999998854
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=223.22 Aligned_cols=286 Identities=19% Similarity=0.320 Sum_probs=236.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE-EEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~DG~I~vwd 214 (713)
+..++.++.+.|+++.=+|-=+.+|+|..+|+|.|+|++..+.+.+++...+.|++++|.-||+. |++|+..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 44567889999999999999999999999999999999999999999866799999999999975 55667779999999
Q ss_pred cCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-----------------E-------------
Q 005123 215 NNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-----------------E------------- 263 (713)
Q Consensus 215 l~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-----------------~------------- 263 (713)
++..+.+..+. .|.+.|..+.|.+....+++++.|+.+++|-.+++.- +
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 99888766654 6778888888888888888888887777663321000 0
Q ss_pred ---------------------------------------------EEE--------------------------------
Q 005123 264 ---------------------------------------------RSL-------------------------------- 266 (713)
Q Consensus 264 ---------------------------------------------~~l-------------------------------- 266 (713)
..+
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 000
Q ss_pred -----------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 267 -----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 267 -----------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~~I~si~fspdg~~Latgs~ 332 (713)
+.....+++++.+..|++.+.|+..|.|.+|++.+|....++ ..|+..|+.++...-++.+++++.
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 001134788899999999999999999999999999888888 479999999999888889999999
Q ss_pred CCeEEEEECCCCe-----------------------------------------eEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 333 DQIIKLYDIRAMK-----------------------------------------ELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 333 Dg~I~IwDl~t~~-----------------------------------------~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|.+++||.++.. .++.|.+|...|++++||+ ++++|+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWli 592 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLI 592 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEE
Confidence 9999999976543 1234568999999999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC-CcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND-HTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D-g~v~iWd 424 (713)
+++.|++|++||+-+...+-.+.. +..++++.|+|+|.+||+ .| .-|.+|.
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999988876555543 678999999999999987 44 8899996
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.9e-24 Score=225.80 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=209.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.+-|+++.+.+||+.|++|++-.+|.|||+..-.. ...+....-...+++.++|.+..++++.||.|.|||+.+..++
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 45689999999999999999999999999876443 3344444556788999999999999999999999999999999
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
+.+.+|.+.+.||.++.||..|.+|+.|++||.||++++..+.... ..+.|.++..+|.+.+|++|-+++.+.|.....
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999999999999999999999999999999999887665543 557899999999999999999999999988764
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
.....+..|.+.|.++.|+..|+|+++.+.|+.+..|..--+..+...+ ..+.|+++.+|- ++++|+||+.|....|
T Consensus 624 -p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 624 -PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATV 700 (705)
T ss_pred -ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEE
Confidence 4455667799999999999999999999999999999998888887766 457899999998 8999999999999888
Q ss_pred EEc
Q 005123 382 WLV 384 (713)
Q Consensus 382 wd~ 384 (713)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 875
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=217.50 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=231.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+.|+||.|+|....|++|+.|+.++||.+.. ...+..+......|.+++|.++|. .+++++....++.||+.+.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999997654 456667777788999999999998 889999999999999998875
Q ss_pred eeee--ccC-CCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 221 KANK--SAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 221 ~~~~--~~~-~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... .++ ...+..+.+++++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 4432 222 3467888999999999999999999999999998888887 66789999999999999999999999999
Q ss_pred ECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 298 DAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~-~I~si~fspdg~~Latgs~Dg~I~IwDl~t------~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|++...+++++....+ .-++++.|.++.|||+|+..|.|.|||.++ -+.+..+..-...|+++.|++ +..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhh
Confidence 9999999998874322 346778889999999999999999999764 355677777778899999999 78888
Q ss_pred EEEEC--CCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 371 VSGSL--DGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 371 asgs~--DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
|.+|. +..+++-.+.+......+. ...-+.|+|++|+|.+-++|- .+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87775 5578888775443211111 223467999999998877764 89999999874
No 124
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=7e-23 Score=225.83 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=231.4
Q ss_pred eEEEEEccCC--CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 147 INRVLWTPTG--RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 147 V~~v~~spdg--~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
|+++. +|.. +.|+.|+.+|.+.|||+.+++.+.++..+.+.|+++.=+|-=+.+++|..+|+|.|++++.++.+.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66664 4443 67999999999999999999999999999999999999998899999999999999999999999998
Q ss_pred ccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 005123 225 SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS- 301 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t- 301 (713)
+...+.|++++|.-||+. +++++..|.+.+||++..+.+..+. .|.+.|..+.|.+....+++++.|+.+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 776799999999999976 5566667999999999888776665 6878888888888888888888888877662221
Q ss_pred -C--ceEEE-------------E---------------------------------------------------------
Q 005123 302 -G--RELCS-------------F--------------------------------------------------------- 308 (713)
Q Consensus 302 -~--~~~~~-------------~--------------------------------------------------------- 308 (713)
| +.++. +
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 1 00000 0
Q ss_pred -c-------------------------------------c------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 309 -H-------------------------------------G------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 309 -~-------------------------------------~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
. . ....+++++.+.+|++.+.|+..|.|.+|++.+|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 0 0134788999999999999999999999999999
Q ss_pred eeEEEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc--------------------------------
Q 005123 345 KELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-------------------------------- 389 (713)
Q Consensus 345 ~~l~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-------------------------------- 389 (713)
-....| ..|+..|++++... -++.+++++.+|.+++||+++...
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 888888 58999999999987 678899999999999999965431
Q ss_pred --------eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 --------QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 --------~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+++.+.+|.+.|++++||+||++|++ .|++||+||+-...
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 11123468999999999999988865 89999999986544
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.8e-22 Score=207.33 Aligned_cols=280 Identities=18% Similarity=0.344 Sum_probs=225.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE---ecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL---QAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l---~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+..++.|..+.|+|.+..|++.+..+.+++|+.+++.+.++. ..+ ++.|.|++|.++|+ +++|+.+|.|.||+.
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 3345567889999998877777777889999999988776543 222 36799999998876 568999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-----------eE---------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------EE--------------------- 263 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-----------~~--------------------- 263 (713)
.+.+..+....|.+.|.+|+...+|.+|- |+.|+.|..||-.-.+ .+
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 98888877779999999999999998665 9999999999831100 00
Q ss_pred --------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 264 --------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 264 --------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
....+|.+....++.+++.+.+++++.|+.++||+ ..+.+.+.. ....+.|+.|+|.| .||+|+..|.
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce
Confidence 01124677788999999999999999999999999 344444333 46778999999999 9999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCCCcEEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~la 414 (713)
..+.|.++...+..-. ....+++++|++ ++.+||.|+.|+.|+||.++.+....... ..+...|+.|.|+.|+.++.
T Consensus 430 w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred EEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 9999999855554444 488999999999 89999999999999999997766555544 33457999999999999997
Q ss_pred E--eCCcEEEEecCC
Q 005123 415 S--NDHTTKFWCRNR 427 (713)
Q Consensus 415 S--~Dg~v~iWd~~~ 427 (713)
+ .|-.|.+|.-+.
T Consensus 508 ~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 508 SNSGDYEILYWKPSE 522 (626)
T ss_pred eccCceEEEEEcccc
Confidence 6 899999995443
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=223.75 Aligned_cols=275 Identities=22% Similarity=0.394 Sum_probs=215.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceE------EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--eccC
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFE------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--KSAH 227 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~------~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--~~~~ 227 (713)
...|+.+.+||.|.++|....... +....|..+|..+.|.+....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 347889999999999998765443 45668999999999999777899999999999999999988776 7899
Q ss_pred CCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee---------------------------EEEEccCCCceEE---E
Q 005123 228 KESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE---------------------------ERSLTGHGWDVKS---V 276 (713)
Q Consensus 228 ~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~---------------------------~~~l~~h~~~V~s---l 276 (713)
...|.+++|.+++ ..|++|+.||.|.|||++.... +..-..+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999999966 5688999999999999853220 1111223444555 5
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCCceEEEE--------ccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 277 DWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSF--------HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 277 ~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~--------~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.+..|...||+++. |+.|+|||+++....... ..+ ...++++.....|.+|++.+.|+.|++||+.+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 56668889999888 999999999975543222 122 235778888888899999999999999999864
Q ss_pred e--eEEEeecCCCC--eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeC
Q 005123 345 K--ELESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSND 417 (713)
Q Consensus 345 ~--~l~~~~~h~~~--V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~D 417 (713)
. .+..+.++... -..-..++ ++.+|++|+.|...+||.+.+......++.+|.-.|++++|.+.. .+.|++|
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 4 34444444321 12234567 789999999999999999999888888899999999999998754 5557899
Q ss_pred CcEEEEecCCCCCc
Q 005123 418 HTTKFWCRNRPGDT 431 (713)
Q Consensus 418 g~v~iWd~~~~~~~ 431 (713)
..++||++....+.
T Consensus 383 ~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 383 FRVKIWRLSNGLEE 396 (720)
T ss_pred cceEEEeccCchhh
Confidence 99999999665443
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=9.7e-22 Score=206.80 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=195.3
Q ss_pred ceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeee
Q 005123 146 SINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 146 ~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~~~~ 223 (713)
.+.+++|+++++.+ ++++.++.|++||..+++....+..+. .+..++|+++++.|+++ +.|+.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999977 466778999999999988877776543 35788999999987655 5689999999998877665
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCC-eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKS 301 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg-~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~t 301 (713)
+.. ...+.+++|+++++++++++.++ .+.+||.++.+.+..+. ....+.+++|++++++|+++ ..++.|++||+++
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 542 34578899999999999988765 56778998877665543 33456789999999988655 4589999999999
Q ss_pred CceEEEEccCC-------CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 302 GRELCSFHGHK-------NMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 302 ~~~~~~~~~h~-------~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
++.+..+..+. .....++|++++++++++ +.++.|.+||+++++.+..+. +...+.+++|++ ++.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEE
Confidence 88776654221 123568899999986554 456789999999888776554 455789999999 66777665
Q ss_pred -ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 374 -SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 374 -s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
+.++.|+|||+++...+..+.. ....+.|++++
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 5689999999988765555532 45668888764
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=214.63 Aligned_cols=262 Identities=19% Similarity=0.241 Sum_probs=216.4
Q ss_pred CcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 166 GEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.++.+||+.++.....+++.. ..-.++..- ++++++++. ....|.+|.+.............+.|.+++-+++|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 459999999999988888652 222222222 346666664 34578999987766555445567889999999999999
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceEEEEccCCCC
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---------SGRELCSFHGHKNM 314 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---------t~~~~~~~~~h~~~ 314 (713)
+.++..|.|++|.+.++..+..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|++. +-+.++.|..|.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999763 34567888999999
Q ss_pred eEEEEEcCC--CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----
Q 005123 315 VLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---- 388 (713)
Q Consensus 315 I~si~fspd--g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---- 388 (713)
|+++..... ..+|++++.|.+|++||+..+..+.++. ....+.+++.+| .++.+++|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccc
Confidence 999988764 4689999999999999999999888876 678899999999 89999999999999998874322
Q ss_pred -----------ceEEEecccCC--CeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 389 -----------PQVEIHNVHDN--TVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
..+..+.+|.+ .|+||+++-||.+|+| .||.|.|||+....-
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 23445567877 9999999999988876 899999999865543
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-24 Score=235.40 Aligned_cols=243 Identities=26% Similarity=0.509 Sum_probs=205.1
Q ss_pred ceEEEEEcc-CCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 005123 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+..|+|+. +.++|||++.+|.|.+||+.. .+.+..+..|+..|++++|+... ++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466778875 468999999999999999987 55667789999999999998865 6788999999999999999998
Q ss_pred eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
..++....+.|++++|++ .+.+|+++.+.|.|.+||++.. +....+.+|.+.|.|+.|+|+..+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888889999999999998 5688999999999999999864 45677889999999999999999999999999999999
Q ss_pred CCCCce--EEEEccCCCCeEEEEEcCCCCE-EEEEE--CCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 299 AKSGRE--LCSFHGHKNMVLCVKWNQNGNW-VLTAS--KDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 299 l~t~~~--~~~~~~h~~~I~si~fspdg~~-Latgs--~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
..+.+. +.++. ....|.+|+|-|+..+ |++++ .|-.|+|||++.-. ...+|..|+..++.++|...+...|.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986553 33333 4678999999997554 55555 47789999998543 457889999999999998766778999
Q ss_pred EECCCcEEEEEcCCCCc
Q 005123 373 GSLDGSIFHWLVGHETP 389 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~ 389 (713)
++.||+|..-.+++...
T Consensus 328 ~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNATT 344 (839)
T ss_pred ecCccHHHHhhhhcccC
Confidence 99999987766655443
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-22 Score=201.45 Aligned_cols=244 Identities=18% Similarity=0.399 Sum_probs=195.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
-.+|++-|+|+.|..-|+++|+|+.|++|+|||..+ ..+....+.|++.|..|.|.+ -|..+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357999999999999999999999999999999543 456677889999999999975 47999999999999999
Q ss_pred EcCC---------CceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCee------EEEEc-------cC
Q 005123 214 QNNM---------NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQE------ERSLT-------GH 269 (713)
Q Consensus 214 dl~~---------~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~------~~~l~-------~h 269 (713)
.-.. -....++......|++++|.+ -|-.|++++.||+||||+.-+--. ..++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 123455667788999999998 467899999999999998743221 22222 35
Q ss_pred CCceEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----ceEEEEccCCCCeEEEEEcCC----CCEEEEEECC
Q 005123 270 GWDVKSVDWHPT---KSLLVSGGKD-----SLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN----GNWVLTASKD 333 (713)
Q Consensus 270 ~~~V~sl~~spd---g~~L~sgs~D-----g~I~IwDl~t~----~~~~~~~~h~~~I~si~fspd----g~~Latgs~D 333 (713)
.....||.|++. ..+|++|+.+ +.++||..... ..+.++.+|...|+.|+|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 567889999973 3578888765 47889966542 345567789999999999995 3568899999
Q ss_pred CeEEEEECCCC--------------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 334 QIIKLYDIRAM--------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 334 g~I~IwDl~t~--------------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
| |+||.++.. +.+..+..|.+.|..+.|+- .+..|++.+.||.|++|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 9 999998731 23556788999999999998 89999999999999999764
No 131
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.8e-23 Score=228.29 Aligned_cols=203 Identities=13% Similarity=0.328 Sum_probs=175.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|.+.|..|.||.++ +|++++.|.+|+||++...+++++|. |.+.|+||+|+| |.+|+++|+-||.|+||++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 4588999999999999766 89999999999999999999998887 999999999999 67899999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------cCCCceEEEEEcC-CCCEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--------GHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--------~h~~~V~sl~~sp-dg~~L~s 287 (713)
..+++.-. ...+-|++++|+|||++.++|+.+|.+++|++...+...... .....|+.+.|.+ +...|++
T Consensus 441 d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 88877654 455899999999999999999999999999998876654332 1123799999997 4446888
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.|..|+|||.++.+.+.+|++..+ .-....|+.||++|+++++|..|+||++..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 89999999999999888988886543 345678999999999999999999999854
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.2e-22 Score=198.80 Aligned_cols=286 Identities=19% Similarity=0.299 Sum_probs=220.9
Q ss_pred CCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCce----------EEE-----EeccCCCEEEEEEccC-CCEEEE
Q 005123 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNF----------EMI-----LQAHDHAIRSMVWSHN-DNWMVS 203 (713)
Q Consensus 141 ~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~----------~~~-----l~~h~~~V~sl~~spd-g~~L~s 203 (713)
..|.+.|+++.+.+ .|+++++|+.||.|.|||++.... +.. -.+|+..|.++.|-|- ...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35899999999988 589999999999999999876430 111 1357788999999884 457778
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
++.|.+++|||.++......++ ..+.|.+-++++- ..+||+|..|-.|++-|+.++.....+.+|...|.+|.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988777663 5677888888774 35688888899999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCC-ceEEEE--------------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 281 TKS-LLVSGGKDSLVKLWDAKSG-RELCSF--------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 281 dg~-~L~sgs~Dg~I~IwDl~t~-~~~~~~--------------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
... .|++|+.||.|++||++.. .+...+ ..|.+.|..++|+.|+.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 766 5788999999999999864 333333 246678999999999999999999999999999877
Q ss_pred eeEE-Ee--ecCCCC----eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--EE
Q 005123 345 KELE-SF--RGHRKD----VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CS 415 (713)
Q Consensus 345 ~~l~-~~--~~h~~~----V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS 415 (713)
+... .+ ..|... +. +. +- +...++.--.++.+.++++-++. .+..+..|-..|.|.++.++-... ..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs-~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGS-FVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccccccccccccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCce-EEEeeecccceeeEEeecCchhhhhccc
Confidence 6422 11 112211 11 22 22 44556666667899999986655 566677788889999999887443 34
Q ss_pred eCCcEEEEecCCCCCc
Q 005123 416 NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 416 ~Dg~v~iWd~~~~~~~ 431 (713)
.|+.|..|........
T Consensus 355 ~d~ni~~w~p~l~~pt 370 (397)
T KOG4283|consen 355 MNGNIYMWSPALKSPT 370 (397)
T ss_pred cCCccccccccccCCc
Confidence 8999999987444333
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-22 Score=200.13 Aligned_cols=244 Identities=19% Similarity=0.419 Sum_probs=193.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEE
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iw 255 (713)
..+|.+-|+++.|...|+.+++|+.|.+|+|||.+.. .+....+.|.+.|..+.|.. -|..+|+|+.|++|.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3568889999999999999999999999999996543 45666788999999999965 57899999999999999
Q ss_pred EcC---------CCeeEEEEccCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC------ceEEEEc-------cC
Q 005123 256 DFA---------RCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSG------RELCSFH-------GH 311 (713)
Q Consensus 256 Dl~---------~~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~------~~~~~~~-------~h 311 (713)
.-. ......++......|++|+|.| -|-.|++++.||.|+||+.-.- .....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 751 1223455667788999999998 4678999999999999976542 2222232 35
Q ss_pred CCCeEEEEEcCC---CCEEEEEECC-----CeEEEEECCC----CeeEEEeecCCCCeEEEEEeCCCC---CEEEEEECC
Q 005123 312 KNMVLCVKWNQN---GNWVLTASKD-----QIIKLYDIRA----MKELESFRGHRKDVTALAWHPFHE---EYFVSGSLD 376 (713)
Q Consensus 312 ~~~I~si~fspd---g~~Latgs~D-----g~I~IwDl~t----~~~l~~~~~h~~~V~sl~fsp~~~---~~lasgs~D 376 (713)
.....|+.|++. ..+||+|+.+ +.++||.... ...+.++.+|...|++|+|.|.-+ .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 667889999974 5678888866 4788887653 334667789999999999999544 479999999
Q ss_pred CcEEEEEcCCCC-------------------ceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 377 GSIFHWLVGHET-------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 377 G~I~Iwd~~~~~-------------------~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
| |+||.++... ..+..+..|.+.|+.+.|+-.|.+|+| .||+||+|..+
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 9999996311 123345679999999999999999987 99999999754
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=212.07 Aligned_cols=243 Identities=21% Similarity=0.378 Sum_probs=209.2
Q ss_pred eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 005123 178 FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD 256 (713)
++..+.+|.+.|.|++=+|+. ..+++|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678899999999999987 7899999999999999999999999999999999999976 6789999999999999
Q ss_pred cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCe
Q 005123 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQI 335 (713)
Q Consensus 257 l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~ 335 (713)
++- ..+.++. ....+..|+-+..++.+++|+. .|.|||......+..+.-....|.++.|+|.. ..|++|.+|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 3555554 3456777877777788888875 59999999888898888778889999999965 55667779999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-- 413 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-- 413 (713)
|.|||+++...+..+. -+..-+.|+|+| ....|+++++|..++.||++.-...+.+..+|.+.|.+++|+|.|.-+
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999998887765 344568899999 888999999999999999999888889999999999999999999444
Q ss_pred EEeCCcEEEEecCCC
Q 005123 414 CSNDHTTKFWCRNRP 428 (713)
Q Consensus 414 aS~Dg~v~iWd~~~~ 428 (713)
+|.|.+|+||..+..
T Consensus 290 gsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccceEEEeecCCC
Confidence 459999999987654
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.9e-22 Score=219.90 Aligned_cols=242 Identities=19% Similarity=0.353 Sum_probs=206.5
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
..|....+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++.+|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368888999999999999999999999999987766 444444447777877776 55699999999999999998887
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
.-..+....-.+++++|+-+|+++|.|++|-.|++.++.+......+++|++.|.++.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 76666667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeecC--------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcE
Q 005123 342 RAMKELESFRGH--------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYL 412 (713)
Q Consensus 342 ~t~~~l~~~~~h--------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 412 (713)
.++.+..++.+- ...++.++|+| ++..|+..+.|+.|++|+.........+...+. ..+.++.|+|+|.+
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 988876655431 34577899999 555666677788999999987776666655543 44999999999999
Q ss_pred EEE--eCCcEEEEecCC
Q 005123 413 LCS--NDHTTKFWCRNR 427 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~ 427 (713)
||+ .||.|.|||.+.
T Consensus 247 iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDT 263 (933)
T ss_pred EeeeccCCcEEEEeccc
Confidence 976 899999999985
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=7.4e-21 Score=199.62 Aligned_cols=233 Identities=18% Similarity=0.377 Sum_probs=192.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
+.-|.|++|.++|+ ++||.++|.|.||+..+.+..+....|++.|.+++...+|.+|- |+.|..|..||-+-.+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence 46799999999997 88999999999999998888888889999999999998887665 99999999998321100
Q ss_pred -------------------------------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 221 -------------------------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 221 -------------------------------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
.....+|.+....++.+++.+.+++|+.|+.|++|+ +.+.+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 001135667788889999999999999999999999 44444
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.. ....+.|+.|+|.| .|++|+..|...+.|.++...+..-.. +..+++++|+++|.+||+|+.|+.|+||.+..
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 4433 45789999999999 999999999999999998655554444 88999999999999999999999999999864
Q ss_pred C-eeEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 344 M-KELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 344 ~-~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
. ...... +.+...|+.+.||. ++++|.+-+.|-.|..|.-
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEcc
Confidence 3 333222 33458899999999 8999999999999999943
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=8.1e-22 Score=195.79 Aligned_cols=233 Identities=17% Similarity=0.288 Sum_probs=192.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~ 216 (713)
....|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..|++.|.++.|-+... .|++|+.|++|+.||.+
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 34569999999999999999999999999999999998 5667788999999999987665 89999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
....+.++. ..+.|.++.. ....++++..++.|.+|++++...+... ......++||++..|.+..+.|+-+|.+
T Consensus 146 ~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 146 SSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred CCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 888877763 4566666655 3457888899999999999765433221 1234568999999998888999999999
Q ss_pred EEEECCCC--ceEEEEccCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 295 KLWDAKSG--RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 295 ~IwDl~t~--~~~~~~~~h~~---------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.|..++.+ +.-.+|+.|.. .|++|+|+|.-..|+|++.||++.+||-.....+++...|...|++++|+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 99998876 44445555542 47889999998899999999999999999888899989999999999999
Q ss_pred CCCCCEEE-EEECC
Q 005123 364 PFHEEYFV-SGSLD 376 (713)
Q Consensus 364 p~~~~~la-sgs~D 376 (713)
. ++.++| +.+.|
T Consensus 303 ~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 303 R-NGSIFAYALGYD 315 (347)
T ss_pred C-CCCEEEEEeecc
Confidence 8 666655 44444
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=7.6e-22 Score=205.32 Aligned_cols=286 Identities=19% Similarity=0.257 Sum_probs=221.1
Q ss_pred EEeeCCCCCceEEEEEccCC--CEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 137 HTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg--~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
....+-+...|++++|+|.. +++|+|...|.|-+||+.+ ...+..+..|...|.+|.|+|.+ ..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34566788999999999975 5788899999999999852 23456678899999999999965 68899999999
Q ss_pred EEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCC-CCEE
Q 005123 210 IKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPT-KSLL 285 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spd-g~~L 285 (713)
|++-|++.......+.. ....+.++.|+.+...++.+..-|...+||+++... ...+..|...|++|+++|- ..+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999988754433333 556678888998888888888888999999987654 5566778889999999994 4589
Q ss_pred EEEeCCCcEEEEECCCCc--e--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCeeEEEeecCC---
Q 005123 286 VSGGKDSLVKLWDAKSGR--E--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR----AMKELESFRGHR--- 354 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~--~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~----t~~~l~~~~~h~--- 354 (713)
++++.|++++|||++.-. . +.....|...|.++.|||++-.|+|.+.|..|+|||.. ....+.++. |.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t 417 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT 417 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcc
Confidence 999999999999998632 2 23345699999999999987779999999999999984 333344443 32
Q ss_pred -C--CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCc-EEEE--eCCcEEEEe
Q 005123 355 -K--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGY-LLCS--NDHTTKFWC 424 (713)
Q Consensus 355 -~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~-~laS--~Dg~v~iWd 424 (713)
. .....+|.| +..+|++|-.-..|-|+|-+.+..+.++.......|.++ .|+|-+. ++++ ..|.|.||.
T Consensus 418 ~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 418 GRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 2 245668999 899999999999999999866654455444334455554 7999887 5554 556666664
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-22 Score=209.73 Aligned_cols=263 Identities=17% Similarity=0.297 Sum_probs=215.2
Q ss_pred eEEEEEccCCCEEEEE--ECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 147 INRVLWTPTGRRLITG--SQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 147 V~~v~~spdg~~Latg--s~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|.++.|+.... |+++ +.|..|++|.-.. ++....-+.....-.||+......++++|+..++|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 88999988775 4444 4578889996332 22222222222344455555556899999999999999999888899
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~ 300 (713)
.++.|...|+++.++..+.+||+++..|.|.|..+.++.....|... ...|.-+.|++..+ +|.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999999999999999999998887777644 44567899999665 56778999999999998
Q ss_pred CCceEEE-EccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 301 SGRELCS-FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 301 t~~~~~~-~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
....+.. .+.|......|+|+| +..+|++.+.|..|.+||++..+....+. ...+.++++|++ ++.+|++|+..|.
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGE 273 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCce
Confidence 7666554 367899999999999 56778899999999999999776666554 567889999999 8999999999999
Q ss_pred EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 379 I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
|..||++..+..+.+..+|...|++|+|-+.-.+
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tv 307 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTV 307 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeeccee
Confidence 9999999999999999999999999999887633
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=8.5e-22 Score=200.54 Aligned_cols=242 Identities=25% Similarity=0.475 Sum_probs=191.4
Q ss_pred EeeCCCCCceEEEEEccCCC--EEEEEECCCcEEEEeCCC----------------CceEEEEeccCCCEEEEEEccCC-
Q 005123 138 TSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQS----------------FNFEMILQAHDHAIRSMVWSHND- 198 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t----------------~~~~~~l~~h~~~V~sl~~spdg- 198 (713)
...-.|.+.|+.+..++-++ +.++-+..|.|+|||+.. .+.+.++.+|...=..|+||+-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34456778888888777653 445556789999999532 34567788899999999999943
Q ss_pred CEEEEEeCCCcEEEEEcCCCcee---eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee--EEEEccCCCc
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE--ERSLTGHGWD 272 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~---~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~--~~~l~~h~~~ 272 (713)
..|++|..-+.|++|...++.-. .-+.+|+..|.+|+||+.. ..|++|+.||+|+|||++.+.. ....+.|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 35888988899999998876532 2345699999999999965 6789999999999999988722 2333789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCee--
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE-- 346 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~-- 346 (713)
|+.|+|+.+..+|++|+.||+++|||+|+ ++.+..|+.|+..|++|.|+| +...|++++.|..|.|||+.....
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999986 567889999999999999999 456788899999999999863211
Q ss_pred ------E--------EEeecC--CCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 347 ------L--------ESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 347 ------l--------~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
. ..+-.| ...|..+.|++....+|++.+.||.-
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 0 011123 35688999999888999999999743
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=193.21 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=204.7
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--e--eccCCCCeeEEEEecCCCEEEEE-ECCCeEEEE
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--N--KSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVW 255 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~--~--~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iw 255 (713)
.+++|.+.|++++|+.||++|++++.|++|+||++++..... . .....+.-+.+.|++|.+.++.. -...+|++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 578999999999999999999999999999999988642211 0 11122366889999998766554 455689999
Q ss_pred EcCCCee---EE---------EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC
Q 005123 256 DFARCQE---ER---------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323 (713)
Q Consensus 256 Dl~~~~~---~~---------~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd 323 (713)
.+.+.+. .. .-+.|...|.++-....+++|++++.|.+|.|||++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 8743211 10 112355667777777788999999999999999999 8999998888888888999999
Q ss_pred CCEEEEEECCCeEEEEECC---CC-----eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc------
Q 005123 324 GNWVLTASKDQIIKLYDIR---AM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------ 389 (713)
Q Consensus 324 g~~Latgs~Dg~I~IwDl~---t~-----~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~------ 389 (713)
|++|++++-.-.|+||.+- .| +.+..+++|.+.|+.++|++ +.+.+++.|.||+++|||++-...
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999998899999863 22 34677899999999999999 889999999999999999853211
Q ss_pred eE----EEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCccccccccCCcccccccceEeeecCCCCCCCCCC
Q 005123 390 QV----EIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEG 464 (713)
Q Consensus 390 ~~----~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (713)
.+ ..+....+.-..|+.+|++.+||. ....+++|..++... ..... ...+..+..+...+++.++....
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-~~~~e-----~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-YPELE-----DIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-chhHH-----HhhcCceeeEEecCCCcEEeeec
Confidence 11 111122334458999999988875 788899998766332 21111 12234445556666666665555
Q ss_pred CCCCC
Q 005123 465 PTTPG 469 (713)
Q Consensus 465 ~~rag 469 (713)
.+.+.
T Consensus 393 dr~vr 397 (420)
T KOG2096|consen 393 DRYVR 397 (420)
T ss_pred ceeee
Confidence 44443
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=5e-22 Score=213.59 Aligned_cols=250 Identities=16% Similarity=0.289 Sum_probs=195.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE--EeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~--l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwd 214 (713)
+....|.+.|..++|.+....|++++.|.++++||+++.+++.. +.+|...|.++||.+++ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34557999999999999778899999999999999999988776 89999999999999976 5778999999999999
Q ss_pred cCCCce---------------------------eeeeccCCCCeeE---EEEecCCCEEEEEEC-CCeEEEEEcCCCeeE
Q 005123 215 NNMNNV---------------------------KANKSAHKESVRD---LSFCRTDLKFCSCSD-DTTVKVWDFARCQEE 263 (713)
Q Consensus 215 l~~~~~---------------------------~~~~~~~~~~V~~---l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~ 263 (713)
++.... +.....+...|.+ +.+..|+..||+++. |+.|+|||+++....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 764320 0111233444555 556678899999988 999999999876543
Q ss_pred EEE--------ccC---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCC--CeEEEEEcCCCCEEE
Q 005123 264 RSL--------TGH---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVL 328 (713)
Q Consensus 264 ~~l--------~~h---~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~--~I~si~fspdg~~La 328 (713)
... ..+ ...+.++..+..|.+|++.+.|+.|++||+.+.. .+..+.++.. .-..-..++|+.+|+
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 221 112 3457888888889999999999999999998643 2333333221 122334688999999
Q ss_pred EEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 329 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+|+.|...++|.+.+.+. ...+.+|...|++++|.+..-.-++++++|-+++||++..+
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999987653 56678899999999999977777899999999999999554
No 143
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.6e-19 Score=194.84 Aligned_cols=289 Identities=26% Similarity=0.504 Sum_probs=238.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-eEEEEeccC-CCEEEEEE-ccCCC-EEEEEeC-CCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHD-HAIRSMVW-SHNDN-WMVSGDD-GGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-~~~~l~~h~-~~V~sl~~-spdg~-~L~sgs~-DG~I~vw 213 (713)
.+..|...|.++.|..++..++.++.|+.+.+|+..... ....+..+. ..+..+.+ +.++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999998886 666666644 37777777 77777 5555444 8999999
Q ss_pred EcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEeC
Q 005123 214 QNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGK 290 (713)
Q Consensus 214 dl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~ 290 (713)
+... ......+..|...|.+++|++++..+++++. |+.+++|++.....+..+..|...|.+++|++++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7777888899999999999999998888885 99999999998888888888999999999999887 5555589
Q ss_pred CCcEEEEECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++||++.... +..+..|...|.++.|++ ++.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCC
Confidence 9999999999888777 677777775 448999998999999999999999987665 455567889999999999 677
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCC-CcEEEE--eCCcEEEEecCCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPI-GYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spd-g~~laS--~Dg~v~iWd~~~~~ 429 (713)
.+++++.|+.+.+||+.......... ..|...|..+.|.++ ..++.+ .|+.+++|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77779989899999887666444443 467778999999433 233333 77899999987766
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7.9e-22 Score=194.86 Aligned_cols=216 Identities=23% Similarity=0.380 Sum_probs=178.6
Q ss_pred eccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCee----------EE-----EEccCCCceEEEEEcC-CCCEEE
Q 005123 224 KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQE----------ER-----SLTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~----------~~-----~l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
...|.+.|+++.+.+ .++++++|+.||.|.+||+++... +. .-.+|...|.++.|.| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 356889999999876 678999999999999999965331 01 1135778899999999 667899
Q ss_pred EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+++.|.++++||.++.+....|+ ..+.|.+-++|| ..-+||+|..|-.|++.|+.+|...+++.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988888887 567788888888 34578889999999999999999999999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCceEEE--------------ecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEI--------------HNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~--------------~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
|..+.+|++|+.||.|++||++.....+.. ..+|.+.|+.++|+.++.+++ +.|..+++|+...
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 987888999999999999999765333332 335778999999999997665 5999999999988
Q ss_pred CCCccccccccCC
Q 005123 428 PGDTARDKFNMGQ 440 (713)
Q Consensus 428 ~~~~~~~~~~~~~ 440 (713)
.....+..-++..
T Consensus 278 G~ntl~~~g~~~~ 290 (397)
T KOG4283|consen 278 GRNTLREFGPIIH 290 (397)
T ss_pred Ccccccccccccc
Confidence 8777765444333
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.3e-20 Score=200.38 Aligned_cols=283 Identities=22% Similarity=0.266 Sum_probs=227.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
+....|.+++|+ ++.+|++.+.+|+|.-||+.+++.+..+....+.|.+++.++.++.+++|++||.+.+++...+++.
T Consensus 67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 345689999999 5667999999999999999999999999999999999999999999999999998888888777654
Q ss_pred e--eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-------c-CCCceEEEEEcCCCCEEEEEeCC
Q 005123 222 A--NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------G-HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 222 ~--~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-------~-h~~~V~sl~~spdg~~L~sgs~D 291 (713)
. .+...++.|.+++|++++..|++|+.||.|++||+.++..+...+ . ...-|++|.|..+ ..|++|...
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~ 224 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSA 224 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCC
Confidence 3 334456899999999999999999999999999999887766322 1 2334778888755 479999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCC
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+|.+||...+..+..+..|.+.|.+++.+.++++|++++.|+.|..|...+.+. ......|...|.+++...
T Consensus 225 G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--- 301 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--- 301 (691)
T ss_pred ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---
Confidence 9999999999999999999999999999999999999999999999998876533 233456788888888765
Q ss_pred CEEEEEECCCcEEEEEcCC------------------------------------------C--------CceEEEeccc
Q 005123 368 EYFVSGSLDGSIFHWLVGH------------------------------------------E--------TPQVEIHNVH 397 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~------------------------------------------~--------~~~~~~~~~h 397 (713)
..|++|+.|..+.+-..+. . ..+..+....
T Consensus 302 ~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 302 NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred ceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC
Confidence 3777787777766644322 0 0011122222
Q ss_pred CCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 398 DNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
...|.+.+.+|+|.++|- .-..++||.++...
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVSRTKIYRLQPDP 414 (691)
T ss_pred ccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence 356889999999999974 77888888887654
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=8.6e-22 Score=210.52 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=103.0
Q ss_pred eeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCce------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
.|.+|.+.|+.+.|++- ..+||||+.|..|+||.+..+-. ...+...+-.|.|+.|++..+-|+..+..|+++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 46789999999999995 45788999999999999874321 122333455688999999877777777789999
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
|||+.+.+.+..+.+|.+.|.+..|+.||++|++++.|+.|+|||-+.
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999999999999999999999999999999999999999999753
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.9e-21 Score=189.23 Aligned_cols=239 Identities=19% Similarity=0.349 Sum_probs=192.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+..|++|.|++.++.|++++.||++++||+........+ .|...+.+++|.. ...+++++.||.|+.+|++++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 678999999999999999999999999999988665554 6889999999985 6789999999999999999876554
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
+-.|...|.||..++....+++|+.|++|++||.+....+..+. ....|.++.. .++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 44599999999999988899999999999999999855555555 3447888877 57789999999999999999877
Q ss_pred eEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEecccC---------CCeEEEEEcCCCc
Q 005123 346 ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHD---------NTVWDLAWHPIGY 411 (713)
Q Consensus 346 ~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h~---------~~V~~l~~spdg~ 411 (713)
.....+ ..+-.+.+|++.| ++.-++++|-||.|.+=.++... ...-.+..|. -+|++|+|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 654332 2345689999999 77888999999999887775541 1112223343 2799999999987
Q ss_pred EEEE--eCCcEEEEecCCCCCc
Q 005123 412 LLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 412 ~laS--~Dg~v~iWd~~~~~~~ 431 (713)
.+++ .||.|.+||+...+..
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred eEEecCCCceEEEccCcchhhh
Confidence 7766 9999999998665543
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=188.53 Aligned_cols=275 Identities=18% Similarity=0.339 Sum_probs=214.0
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ceEEEEe-ccCCCEEEEEEc-------cCCCEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQ-AHDHAIRSMVWS-------HNDNWMV 202 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~~~~l~-~h~~~V~sl~~s-------pdg~~L~ 202 (713)
-.+-...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+.++++
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 3344567899999999999999999999985321 1111121 124567788885 5678999
Q ss_pred EEeCCCcEEEEEcCCCceeeeecc--CCC---CeeEEEEecCCCEEEEEECCCeEEEEEc-CCCeeE---EEE----ccC
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKSA--HKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDF-ARCQEE---RSL----TGH 269 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~~--~~~---~V~~l~fs~dg~~Las~s~Dg~I~iwDl-~~~~~~---~~l----~~h 269 (713)
+.+.+.-|++||.-+++....+.. |.+ ...+|+|++||.+|++|. .++|+|||+ +.+... .++ .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999999998877654 222 456899999999998875 568999999 333221 111 123
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC-ee
Q 005123 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAM-KE 346 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~-~~ 346 (713)
.+-|.|++|+| +.+.+++++....+-||.-...+.+..+.+|.+.|+.+.|.++|+.|++|+. |..|..||+|.. ..
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 56789999999 5569999999999999998889999999999999999999999999999884 678999999864 45
Q ss_pred EEEeecCCC-CeEEEEE--eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCc
Q 005123 347 LESFRGHRK-DVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHT 419 (713)
Q Consensus 347 l~~~~~h~~-~V~sl~f--sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~ 419 (713)
+..+..|.. .-..|-| .+ .+++|++|+.||.|++||+++-.........++..|+.++++|---++|+..|.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 666666655 3334444 45 688999999999999999988565566677789999999999998888875554
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-21 Score=197.96 Aligned_cols=279 Identities=22% Similarity=0.356 Sum_probs=204.4
Q ss_pred EEEEccCCCEEEEEECCC-----cEEEEeCCCCceEEEEeccC----CCEEEEEEcc-------CCCEEEEEeCCCcEEE
Q 005123 149 RVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHD----HAIRSMVWSH-------NDNWMVSGDDGGAIKY 212 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h~----~~V~sl~~sp-------dg~~L~sgs~DG~I~v 212 (713)
.+..-|+.++|+++-.+. .|+||+-.... .+..|. ..-.|++|.. .|+++|+|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 344556666666664432 35666644311 122222 2235777753 3589999999999999
Q ss_pred EEcCCCcee---------------------eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 213 WQNNMNNVK---------------------ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 213 wdl~~~~~~---------------------~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
||+.-...+ ....+|+..|.+|+|+.+- +.||+|+.|.+|++||+.++++..++..|.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 997532100 0113577888899998754 678999999999999999999999999999
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eeE
Q 005123 271 WDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KEL 347 (713)
Q Consensus 271 ~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-~~l 347 (713)
..|.++.|++ ...+|++|+.|++|.++|+|.-......-...+.|-.++|.+. ...+++++.||+|+-+|+|+. +++
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence 9999999999 5679999999999999999953322222225678999999984 566778889999999999975 899
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCCC-cEEE-E-eCCcEEEE
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIG-YLLC-S-NDHTTKFW 423 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg-~~la-S-~Dg~v~iW 423 (713)
.+++.|...|++|+++.....++++++.|+.|++|++.......... .-.-+...|.++.++- .+++ + ..+.++||
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 99999999999999999888999999999999999996554322211 1112446677777776 2333 3 55679999
Q ss_pred ecCCCCC
Q 005123 424 CRNRPGD 430 (713)
Q Consensus 424 d~~~~~~ 430 (713)
|+.....
T Consensus 447 d~~~~~~ 453 (463)
T KOG0270|consen 447 DIFTNSP 453 (463)
T ss_pred ecccChh
Confidence 9855443
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=6.7e-21 Score=195.91 Aligned_cols=288 Identities=19% Similarity=0.315 Sum_probs=221.4
Q ss_pred CCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCC---------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 143 H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~---------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...+|..+.|..+.. +|+||+.|..|+||.++.. +....+..|..+|++|.|+++|++|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346799999999876 9999999999999975432 234567789999999999999999999999999999
Q ss_pred EEcC--------C--------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEE
Q 005123 213 WQNN--------M--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (713)
Q Consensus 213 wdl~--------~--------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl 276 (713)
|... + ....+.+.+|.+.|.+++|++++.++++++.|.++++||+..+..+..+..|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12445567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--------c-----------C----CCCeEEEEEcCCCCEEEEEEC-
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--------G-----------H----KNMVLCVKWNQNGNWVLTASK- 332 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--------~-----------h----~~~I~si~fspdg~~Latgs~- 332 (713)
+|.|-++++++-+.|...+++++...+.+.... . | ......++|+|||.+|++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999999887777766433322111 0 1 123456889999999987532
Q ss_pred ---C-----CeEEEEECCCC-eeEEEeecCCCCeEEEEEeCC-----------------CCCEEEEEECCCcEEEEEcCC
Q 005123 333 ---D-----QIIKLYDIRAM-KELESFRGHRKDVTALAWHPF-----------------HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 333 ---D-----g~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~-----------------~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. ++.++|+-+.. +.+..+......+..+.|+|. .+-.+|.++.+ .|+|||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence 2 23455554432 234444445555566665541 12345555554 899999988
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCCCc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~~~ 431 (713)
-.....+...|-..|++++|+.||.++ .|.||...+-.++..+..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 888888888899999999999999555 359999998887654443
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=194.80 Aligned_cols=241 Identities=21% Similarity=0.386 Sum_probs=187.0
Q ss_pred EeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCC----------------CceeeeeccCCCCeeEEEEecCC-CE
Q 005123 182 LQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----------------NNVKANKSAHKESVRDLSFCRTD-LK 242 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~----------------~~~~~~~~~~~~~V~~l~fs~dg-~~ 242 (713)
...|.+.|+.+.-++-+ .+.++-+..|.|+||++.. .+.+.++.+|...=..|+||+-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34567777777666654 4555667889999999642 23456677888888999999843 34
Q ss_pred EEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCe
Q 005123 243 FCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMV 315 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I 315 (713)
|++|..-+.|++|...++.- ..-+.+|...|..|+|+|. ...|++|+.|++|+|||+|++ .++. .+.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCce
Confidence 78888888999999877543 2346679999999999994 568999999999999999987 2333 37899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC---CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc---
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--- 389 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t---~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~--- 389 (713)
+.|+|+.+..+||+|+.||+++|||+|. ++.+..|+.|...|++|.|+|.+...|++++.|..|.|||+.....
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999985 4568899999999999999998889999999999999999954322
Q ss_pred ------------eEEEeccc--CCCeEEEEEcCCC--cEEEE-eCCcEEEE
Q 005123 390 ------------QVEIHNVH--DNTVWDLAWHPIG--YLLCS-NDHTTKFW 423 (713)
Q Consensus 390 ------------~~~~~~~h--~~~V~~l~~spdg--~~laS-~Dg~v~iW 423 (713)
.-.++-.| ...|..+.|++.- .++.+ .||.-.+.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 01122233 3578899999854 55554 56544443
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6e-22 Score=225.98 Aligned_cols=280 Identities=21% Similarity=0.400 Sum_probs=215.5
Q ss_pred EEEEEccCCC-EEEEE----------ECCCcEEEEeCCC--Cc----eEEEEeccCCCEEEEEEccCCCE----EEEEeC
Q 005123 148 NRVLWTPTGR-RLITG----------SQSGEFTLWNGQS--FN----FEMILQAHDHAIRSMVWSHNDNW----MVSGDD 206 (713)
Q Consensus 148 ~~v~~spdg~-~Latg----------s~dg~V~Iwd~~t--~~----~~~~l~~h~~~V~sl~~spdg~~----L~sgs~ 206 (713)
..++|++++. +||+| +.+.++.||.+.. .+ .+..+. .....+.++|.+.++. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578888886 45554 2345556664332 22 122222 2456789999998765 888999
Q ss_pred CCcEEEEEcCCC------ceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEE
Q 005123 207 GGAIKYWQNNMN------NVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVD 277 (713)
Q Consensus 207 DG~I~vwdl~~~------~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~ 277 (713)
||.|.+||...- .++..+..|.+.|..|.|++... .||+|++||.|.|||+++-+.-.... ...+.|.+|+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999997652 35566788999999999999765 99999999999999998755444332 2457899999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-eeEEE
Q 005123 278 WHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM-KELES 349 (713)
Q Consensus 278 ~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg-~~Latgs~Dg---~I~IwDl~t~-~~l~~ 349 (713)
|+.. ...|++++.+|++.|||+|..+.+..+..+.. .+..+.|+|+. ..|++++.|. .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9974 45788899999999999999888877765544 47889999975 4566666554 6999999854 46788
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EE--EEeCCcEEEEecC
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LL--CSNDHTTKFWCRN 426 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l--aS~Dg~v~iWd~~ 426 (713)
+.+|...|.++.|++.|.++|++++.|+.|.+|+.++++.+..+-. ..+.+..+.|++..- ++ ++-||.|.||.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999998889999999999999999988775555543 678899999999773 33 4599999999987
Q ss_pred CCC
Q 005123 427 RPG 429 (713)
Q Consensus 427 ~~~ 429 (713)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 655
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.1e-21 Score=201.51 Aligned_cols=243 Identities=18% Similarity=0.290 Sum_probs=192.4
Q ss_pred EEEEEccC-------CCEEEEEECCCcEEEEeCCCCce---------------------EEEEeccCCCEEEEEEccCC-
Q 005123 148 NRVLWTPT-------GRRLITGSQSGEFTLWNGQSFNF---------------------EMILQAHDHAIRSMVWSHND- 198 (713)
Q Consensus 148 ~~v~~spd-------g~~Latgs~dg~V~Iwd~~t~~~---------------------~~~l~~h~~~V~sl~~spdg- 198 (713)
.|++|... |+++|+|+.|..|.|||+.-... -....+|+.+|.+++|+.+-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666543 68999999999999999642110 01123688889999998764
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEE
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~ 277 (713)
+.||+|+.|.+|++||+.+++...++..|...|.++.|++.. .+|++|+.|++|.+.|++........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 578899999999999999999999999999999999999854 7799999999999999985333222223557899999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCee--EEEeec
Q 005123 278 WHPT-KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE--LESFRG 352 (713)
Q Consensus 278 ~spd-g~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~--l~~~~~ 352 (713)
|++. ...+++++.||+|+-+|+|+. +++.+++.|...|.+|+++.. -.+|++++.|+.|++|++..... +..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 9984 457888889999999999984 899999999999999999884 56788999999999999874332 221111
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
.-+...|.++.++...+++.|+..+.++|||+.+...+
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 12346778888877778899999999999999766543
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.7e-22 Score=226.84 Aligned_cols=245 Identities=20% Similarity=0.373 Sum_probs=204.6
Q ss_pred CCceEEEEEccCCCE----EEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEE
Q 005123 144 RCSINRVLWTPTGRR----LITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (713)
Q Consensus 144 ~~~V~~v~~spdg~~----Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~v 212 (713)
..+.++++|.+.++. ||.|.+||.|.+||.... ..+.++..|++.|..+.|++... +|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446788999998876 888999999999996552 34566788999999999999765 9999999999999
Q ss_pred EEcCCCceeeee--ccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCC--ceEEEEEcCCCC-EEE
Q 005123 213 WQNNMNNVKANK--SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKSVDWHPTKS-LLV 286 (713)
Q Consensus 213 wdl~~~~~~~~~--~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~--~V~sl~~spdg~-~L~ 286 (713)
||++.-+.-... ....+.|.+|+|+..- ..|++++.+|++.|||++..+.+..+..+.. .+..|+|+|+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875544333 2356789999998754 5688889999999999999888877765544 478999999764 566
Q ss_pred EEeCCC---cEEEEECCCC-ceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 287 SGGKDS---LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 287 sgs~Dg---~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
+++.|. .|.+||+|.- ..++++.+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+.....++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666654 4999999864 4567788999999999999955 8899999999999999999999999998889999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|++.+..+|++++.||.|.|+.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999985443
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.5e-20 Score=201.10 Aligned_cols=287 Identities=21% Similarity=0.438 Sum_probs=229.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
+.........|+++++.+++-+..|-.++|..+. ......+.+|.+.|++|+|+|.|++|++.+.|-+-+||---..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 4456789999999999999999999999998333 2345567899999999999999999999999999999854411
Q ss_pred ----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----------------------------------
Q 005123 219 ----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----------------------------------- 259 (713)
Q Consensus 219 ----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~----------------------------------- 259 (713)
..+..-..|...++|++|-+....|++|.++..+|+|+.-.
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 23333456888999999998777899999999999987410
Q ss_pred --------Ce---------------------------------eEEEEccCCCceEEEEEcCCCCEEEEEeCCC-----c
Q 005123 260 --------CQ---------------------------------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-----L 293 (713)
Q Consensus 260 --------~~---------------------------------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-----~ 293 (713)
+. .+.++.+|...|.+++.+++++++|++++.. .
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 00 0111346888899999999999999998754 4
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCCCCE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+||+..+...+..+..|.-.|+.++||+||++|++.+.|+++.+|...... .....+.|+.-|.++.|+| ++.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccce
Confidence 9999999999999999999999999999999999999999999999875322 1234678999999999999 7889
Q ss_pred EEEEECCCcEEEEEcCCC--CceEE-EecccCCCeEEEEEcCCC----c-EE-EE-eCCcEEEEecCCCC
Q 005123 370 FVSGSLDGSIFHWLVGHE--TPQVE-IHNVHDNTVWDLAWHPIG----Y-LL-CS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~--~~~~~-~~~~h~~~V~~l~~spdg----~-~l-aS-~Dg~v~iWd~~~~~ 429 (713)
|+|+|.|.+|+||..... +...+ ....+...|++++|.+-. . ++ ++ ..|.|.||...+..
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 999999999999998766 32222 333578899999997632 2 33 33 89999999976444
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.6e-21 Score=199.88 Aligned_cols=267 Identities=15% Similarity=0.199 Sum_probs=209.9
Q ss_pred EEECCCcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEE--EEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEE
Q 005123 161 TGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMV--SGDDGGAIKYWQNNMN--NVKANKSAHKESVRDL 234 (713)
Q Consensus 161 tgs~dg~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~--sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l 234 (713)
+++....++|||....+....+..|+ -.|.+++|..... |+ +.+.|..|++|.-... ++-..-+.....-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33344479999988776666655443 3489999987654 44 3456788999975433 2222222233344555
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-CC
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KN 313 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-~~ 313 (713)
+......++++++..++|+|||++...+.+.+++|.+.|+++.++-...+|++++..|.|.|..+.++.....|... ..
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 55556689999999999999999988888899999999999999999999999999999999999998887777644 34
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE
Q 005123 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (713)
Q Consensus 314 ~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~ 391 (713)
.|.-+.|++..++| .+++.+|.|.+||+.....+..+ +.|..+...|+|+|.++.+|++.+.|..|.+||++......
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 56689999976654 57889999999999977776554 57999999999999889999999999999999998666554
Q ss_pred EEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 392 EIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+.. +.+...++|.++|.+||. ..|.|..||+.....
T Consensus 246 ~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 246 RLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eeee--cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 4443 568999999999988875 789999999876544
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.3e-18 Score=185.74 Aligned_cols=288 Identities=29% Similarity=0.530 Sum_probs=233.2
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~v 212 (713)
.....+..|...|.+++|+++++++++++. |+.+++|+..+...+..+..|...|.+++|++++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 445678899999999999999998888886 99999999999888999999999999999999988 5555599999999
Q ss_pred EEcCCCceee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||...+.... .+..|...+ ...|++++.++++++.|+.+++||+..... +..+..|...|.++.|++++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9988777777 577777775 448999998899999999999999986654 4444567899999999998888888999
Q ss_pred CCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+.+.+||+++........ .|...+..+.|.+++..++++ ..|+.+.+|++............ ..+..+.++. +
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-
Confidence 9889999999887766665 677789999994232566655 68889999999987733333322 2288999998 7
Q ss_pred CEEEE-EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 368 EYFVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~las-gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
..++. +..++.+.+|+.............+ ..+..+.++.++..+++ .++.+++|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 55555 8899999999997766544443322 78999999999988764 899999999876
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.2e-20 Score=186.23 Aligned_cols=289 Identities=21% Similarity=0.308 Sum_probs=218.7
Q ss_pred eEEEEeeCCCCCceEEEEEcc-----CCCEEEEEECCCcEEEEeCCCCceEEEEe-----ccCCCEEEEEEccCC----C
Q 005123 134 KFVHTSLNKNRCSINRVLWTP-----TGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHND----N 199 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~sp-----dg~~Latgs~dg~V~Iwd~~t~~~~~~l~-----~h~~~V~sl~~spdg----~ 199 (713)
++.......|+..|..++|+. +-..+|+++.+ .|.||+......+..+. .|+.....++|+-|. -
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 344455678999999999985 23456666544 68888866543333322 366778888997653 4
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKS 275 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~s 275 (713)
+||+++.-|.|+|.|+.+++....+.+|...|+.|.++|+. ++++++|.|.+||+||+++..++..+- +|.+.|.+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 78889999999999999999999999999999999999976 688999999999999999999988874 69999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEE----------------------------EEccCCCCeEEEEEcCCCCEE
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELC----------------------------SFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~----------------------------~~~~h~~~I~si~fspdg~~L 327 (713)
+.|+.++.+|++++.|..|++|++...+... +...|...|.|+.|- |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 9999999999999999999999998322100 112355666667664 6789
Q ss_pred EEEECCCeEEEEEC-CCC-------------eeEEEeecCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 328 LTASKDQIIKLYDI-RAM-------------KELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 328 atgs~Dg~I~IwDl-~t~-------------~~l~~~~~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
++-+.++.|..|.. +-. ..+.++......|+.+.|+-+ -.+.||.|...|.|++||++.......
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 99888999999986 111 123444445556776665431 467899999999999999987665321
Q ss_pred -Ee--cccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 393 -IH--NVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 393 -~~--~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.+ ......|...+|+.|+.+|. .+|++|--||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 11 12346799999999996664 48999988876
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=181.31 Aligned_cols=238 Identities=15% Similarity=0.258 Sum_probs=186.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|...|++++||+||+.|+++|.|..|++||+.++..+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 269 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 269 h~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+.|..+.|+|... .++++-.+..-.+.++...+....-.. .+....+..|.+.|++|++|...|.+.|+|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999999443 333333344455556554322211111 112233446888999999999999999999999
Q ss_pred CeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEEecc-------cCCCeEEEEEcCCCcE
Q 005123 344 MKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNV-------HDNTVWDLAWHPIGYL 412 (713)
Q Consensus 344 ~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~~~~-------h~~~V~~l~~spdg~~ 412 (713)
.+++..++... ..|..+.++- .+++|+.-+.|..|+.|+++.-... ...... ....=.+++|+.+|.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999988766 7899999998 8999999999999999998521111 111100 1223457889999988
Q ss_pred EEE---eCCcEEEEecCCC
Q 005123 413 LCS---NDHTTKFWCRNRP 428 (713)
Q Consensus 413 laS---~Dg~v~iWd~~~~ 428 (713)
+|. .-..++||..+..
T Consensus 264 v~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccccceeEEEEecCCc
Confidence 864 6788999987543
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=191.54 Aligned_cols=245 Identities=15% Similarity=0.306 Sum_probs=203.8
Q ss_pred eeCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEE--Eecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMI--LQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~--l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
++.-.+.+|.+++|.++|. .+++++....+++||+.+.+..+. ..++ ...+.....++++++|++.+..|.|.|..
T Consensus 252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 3444578999999999998 899999999999999988765433 3333 35678889999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceEEEEEcCCCCEEEEEeCCCc
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
..+++.+..++ ..+.|.+++|+.|++.|++++.+|.|++||++...++..+....+ .-++++.+.++.+||+|+..|.
T Consensus 332 akT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 332 AKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 99998887764 477899999999999999999999999999999988888874322 2356777789999999999999
Q ss_pred EEEEECCC------CceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEeecC---CCCeEEEEE
Q 005123 294 VKLWDAKS------GRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (713)
Q Consensus 294 I~IwDl~t------~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~~~h---~~~V~sl~f 362 (713)
|.|||.++ .+.+..+......|+++.|++|..+||.++. +..+++..+.+......|... -+.|+|++|
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence 99999764 3456666667788999999999999998774 567999988876665555433 256899999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|| ++.++|.|..+|.|.+|.+.
T Consensus 491 SP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cC-CCceEEeecCCCceeeEeec
Confidence 99 89999999999999999874
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=6e-20 Score=197.46 Aligned_cols=271 Identities=15% Similarity=0.326 Sum_probs=218.8
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|..++|-|||..|+.+..| .+.|||...+.....+++|++.|.|++|+.||+.+++|+.|..|.||+-.-...++ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 89999999999988887655 69999999999999999999999999999999999999999999999765444433 4
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.|.+.|.|+.|+|-...|++|+.+ ..-+|..+.....+ .+ ....|.+.+|..||.+|+.|-.||+|.|-+-. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 789999999999999999998865 47788765533221 11 34578999999999999999999999998644 4444
Q ss_pred EEEc---cCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 306 CSFH---GHKNMVLCVKWNQN-----GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 306 ~~~~---~h~~~I~si~fspd-----g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
..+. +.++.|.+|+|+|. ...+++.....++.+|.+. |+.+..-+.-.-.-.++.+.+ ++.+++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCC
Confidence 4443 46789999999985 3678899999999999887 666654444455567888888 899999999999
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
.+.+|.- .+ ..+......+..||.++..|++..++ ..||+|..|++-.
T Consensus 245 ~L~~fTR-~G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 245 QLSLFTR-DG-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceEEEee-cC-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999964 22 23344444678999999999996664 3999999998744
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=6.1e-21 Score=209.85 Aligned_cols=281 Identities=19% Similarity=0.283 Sum_probs=228.4
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+.|.+|.+.|.|+.|...|.+|++|+.|..|+||..++..+...+.+|++.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 56889999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE---Ec-cCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS---LT-GHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~---l~-~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+..+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+.. ++ .....+.++.|...+..+++++.|+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999999854 778899999999871111111 01 13356778888888889999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
-..|...... .+...+.-+.++.| ..+.+++-.+-.+++|++.++..++.+.+|...+..+.++|.+.....+
T Consensus 340 a~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 340 ARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 9888765311 11112222222222 2456677778889999999999999999999999999999988888899
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
++.||.+.|||+-.+........+ ...+.+.+|+.||..++ + .-|.+.|.......
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999999877766666655 46677889999996665 4 55777777654433
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=181.71 Aligned_cols=290 Identities=14% Similarity=0.246 Sum_probs=222.3
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEe-ccCCCEEEEEEccCCCEEEEEeC
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQ-AHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
.+..+.+.+|.+.|++|.|+.++++||+|+.|..++||+++.. +.+.... .|.+.|.|++|...+++|++|..
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 3445678899999999999999999999999999999996532 3333333 35689999999998899999999
Q ss_pred CCcEEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC
Q 005123 207 GGAIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd 281 (713)
+++|.+-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||++.... ...+........++.|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999999887766532 335899999999999999999999999999976542 2233334567889999994
Q ss_pred -CCEEEEEeCCCcEEEEECCCCce-EEEE---ccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeec
Q 005123 282 -KSLLVSGGKDSLVKLWDAKSGRE-LCSF---HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRG 352 (713)
Q Consensus 282 -g~~L~sgs~Dg~I~IwDl~t~~~-~~~~---~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~ 352 (713)
-.+|++.+..+-+.+||.+.... +... .+. ...-.++.|+++|+.|++--....-.+||+.+.++ +..+.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-
Confidence 56788888888999999986432 2111 111 22235678999999998877777778889886444 23332
Q ss_pred CC-------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC----------------------CceEEEecccCCCeEE
Q 005123 353 HR-------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE----------------------TPQVEIHNVHDNTVWD 403 (713)
Q Consensus 353 h~-------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~----------------------~~~~~~~~~h~~~V~~ 403 (713)
|. ..|.+++|.. ...+++|+.+-.|++|.+... ...+.++.+|...++.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 22 3467788864 556999999999999988321 1234567889999999
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
+.|++...+||| ..+.++||.--
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 999999999987 78999999743
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.6e-19 Score=188.03 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=196.8
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEecCC-CEE
Q 005123 171 WNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTD-LKF 243 (713)
Q Consensus 171 wd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~dg-~~L 243 (713)
+|+.+......+..+.+.|++++|+|.. +++++|+..|.|-+||+.+. .-+..+..|...|.+|.|++.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4445555566777789999999999965 47889999999999999532 3445567899999999999955 679
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEccCCCCeEEEEE
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKW 320 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~~h~~~I~si~f 320 (713)
++.|.||+|++-|+++......+. .....+.++.|+.+...++.+..=|.+.+||+++.+. ...+.-|+..|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999999999999998765433333 2455678888988888888888888999999998665 5666778889999999
Q ss_pred cCC-CCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC----CCCceE
Q 005123 321 NQN-GNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQV 391 (713)
Q Consensus 321 spd-g~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~----~~~~~~ 391 (713)
+|. ..+||+++.|++++|||++.... +.....|...|.++.|||.+++ |+|.+.|..|+|||.. ......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccc
Confidence 994 56788999999999999986432 2333459999999999996666 9999999999999983 223233
Q ss_pred EEecccCC----CeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 392 EIHNVHDN----TVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 392 ~~~~~h~~----~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.+...+.. ......|.|+..+++. .-..|.|+|-+..
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 33322221 2445689999988876 5667888876443
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.9e-19 Score=179.42 Aligned_cols=241 Identities=14% Similarity=0.239 Sum_probs=193.8
Q ss_pred CCCCceEEEEEccCC----CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTG----RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg----~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.|......++|+-|. -+||+++.-|.|+|.|+.++++...+.+|..+|+.|.|.|+. ++|++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 378888899998764 478899999999999999999999999999999999999976 688899999999999999
Q ss_pred CCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----E------------------------E
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----R------------------------S 265 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~----~------------------------~ 265 (713)
+..++..+ .+|.+.|.++.|+.++.+|++|+.|.+|++|++...+.. . +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99988776 569999999999999999999999999999999732110 0 1
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc-------------eEEEEccCCCCeEEEEEc--CCCCEEEE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGR-------------ELCSFHGHKNMVLCVKWN--QNGNWVLT 329 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~-------------~~~~~~~h~~~I~si~fs--pdg~~Lat 329 (713)
-.-|...|.|+.|. |+++++-+.++.|..|..- -.+ .+.++.-....|+-|.|+ +-.+.||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12366677788887 7899999999999999762 111 122333344556666554 45889999
Q ss_pred EECCCeEEEEECCCCeeE--EEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 330 ASKDQIIKLYDIRAMKEL--ESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l--~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|...|.|++||++..+.. .++. .....|...+|+. ++.+|+..++|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999999999976652 1222 2245789999998 89999999999999999863
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.9e-19 Score=189.34 Aligned_cols=250 Identities=17% Similarity=0.316 Sum_probs=204.8
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE--EEEEECCCeEEEE
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVW 255 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~--Las~s~Dg~I~iw 255 (713)
+-..+.+|++.|+||...+.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|++.++. ||++..+ ++.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 345678999999999999999999999999999999999999998864 5679999999997654 4443333 24443
Q ss_pred Ec---------------------------------CCC----eeEEEEccCCCceEEEEEcCCCCEEEEEeCC---CcEE
Q 005123 256 DF---------------------------------ARC----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVK 295 (713)
Q Consensus 256 Dl---------------------------------~~~----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---g~I~ 295 (713)
+. ... .-+.....|...|+.|.|+..|.+|++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32 100 0122333477889999999999999998764 4599
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|+++...+...-|....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|.+++.++ ++.-|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 9999887777777777888999999999999988875 5799999998888888887888999999999 7888999999
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
|+.++.||+....+..+.+..|...|++++|++.--++|+ .|+++.||--....+.
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 9999999999888888888899999999999999988876 7899999875544444
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.7e-19 Score=178.33 Aligned_cols=269 Identities=16% Similarity=0.249 Sum_probs=197.5
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeee--ccCC-CCe
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK-ESV 231 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~~~~~~~--~~~~-~~V 231 (713)
+.+|++.++|.|+|||..+++.+..++++...++.++|..+ ...+.+++.||+|++||+++......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999873 578889999999999999987554433 2233 356
Q ss_pred eEEEEecCCCEEEEEEC----CCeEEEEEcCCCee-EEEE-ccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce
Q 005123 232 RDLSFCRTDLKFCSCSD----DTTVKVWDFARCQE-ERSL-TGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~----Dg~I~iwDl~~~~~-~~~l-~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
.+++...++..+++++. |-.|.+||++..+. +..+ ..|.+.|++|.|+| +.++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67776667777887754 67899999988766 4443 56999999999999 567999999999999999976432
Q ss_pred ---EEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCC------------CCeEEEEEeCCCCC
Q 005123 305 ---LCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEE 368 (713)
Q Consensus 305 ---~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~------------~~V~sl~fsp~~~~ 368 (713)
+.....+.+.|.++.|..++ +.|.+-+...+..+|+++.+.+...+.... ..+... .++.+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcc
Confidence 22223477789999999876 458888899999999999877544433211 111111 2233455
Q ss_pred EEEEEEC-CCcEEEEEcCC------CCceEEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecC
Q 005123 369 YFVSGSL-DGSIFHWLVGH------ETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRN 426 (713)
Q Consensus 369 ~lasgs~-DG~I~Iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~ 426 (713)
+++.++. -+...++-+.. .+....+..+|...|.++.|.-.+.++ ++.||.+.+|...
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 5555444 56666665532 222333444578889999998766555 4499999999863
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.1e-19 Score=193.80 Aligned_cols=251 Identities=25% Similarity=0.356 Sum_probs=198.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
.++..|.+.|+.++|.+....|++++.||.|++|++.. .+.+.++.+|.+.|.|+++..++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 37888999999999999999999999999999999832 2456788999999999999999999999999999
Q ss_pred EEEEEcCCC----------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEE
Q 005123 210 IKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVD 277 (713)
Q Consensus 210 I~vwdl~~~----------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~ 277 (713)
|+.|++... .....+.+|.+.|+.++++.....|++|+.||+|++|+...... .++.. ....-.+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965421 24456678999999999999999999999999999999866544 33322 223344555
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE
Q 005123 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349 (713)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~ 349 (713)
+.... ...++....+.-.++|......+..+.. ....+..+.+++...+.+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 2222222233333444444444444432 124577888999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
...|...++++++.+ ++-+|++++.|+.|++|.+......
T Consensus 527 ~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eeeccceecceeecC-CCceEEeecCCceeehhhccchhee
Confidence 999999999999999 8999999999999999998655433
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-18 Score=165.23 Aligned_cols=267 Identities=15% Similarity=0.251 Sum_probs=197.4
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCC----------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
..|.+-+|+|.+++|++|..+|.|.+..+++ ...+...++|++.|..++|. .++|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3567778999999999999999999998653 12344558999999999997 46777766 59999998
Q ss_pred cCCCcee----eee----c-----cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC
Q 005123 215 NNMNNVK----ANK----S-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 215 l~~~~~~----~~~----~-----~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd 281 (713)
.+..... ... . ..--.|+++.+.|.++.|+.++.|+.++.||+++++..+++++|.+.|.++..-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6543220 000 0 11236889999988888888889999999999999999999999999999998666
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEccC----------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGH----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h----------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
...+++|++||+++|||+++++++..+... ..+|-+++. +..+|++|+. ..+.+|.+++.++..+|.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 667999999999999999999998877532 235666665 5668887764 569999999999888776
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEE-EEeCCcEEEE
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLL-CSNDHTTKFW 423 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~l-aS~Dg~v~iW 423 (713)
....|..+.| ..+.+++++..+.|.-|.++. . +...........++..|+-.- .+. |+..+.+.|+
T Consensus 245 -ipa~v~~v~F---~~d~vl~~G~g~~v~~~~l~G-v-l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 -IPARVHLVDF---VDDCVLIGGEGNHVQSYTLNG-V-LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -cccceeEeee---ecceEEEeccccceeeeeecc-E-EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4566888888 456788888888999998743 2 222222223345555565433 222 2355566655
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=186.92 Aligned_cols=288 Identities=17% Similarity=0.287 Sum_probs=221.5
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
-..|...++|.++|++++++|++..||.|.||.--. ......+.-|...|.+++|+.+|.+|++|+.+|.+.+|.+
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 345777799999999999999999999999997332 2335567789999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----------CCCceEEEEEcCCCCE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----------HGWDVKSVDWHPTKSL 284 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----------h~~~V~sl~~spdg~~ 284 (713)
++++ ...+....+.|..+.+++|+++.+....|+.|.+....+.+...++.+ ..+-.+.++++|.-+.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9998 566677889999999999999999999999999998766554444432 2344678899997778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc-----C------CCCeEEEEEcCCCCEEEEEE--------CCC--eEEEEECCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG-----H------KNMVLCVKWNQNGNWVLTAS--------KDQ--IIKLYDIRA 343 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~-----h------~~~I~si~fspdg~~Latgs--------~Dg--~I~IwDl~t 343 (713)
++..+..+.|.+||+-+.+.+..+.. + ...++.++.+..|.+++|.. .|| .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88888999999999988776665531 1 22467777888899999864 232 578886653
Q ss_pred Cee----E-EEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCC---------ceEEEecccCCCeEEEEEcC
Q 005123 344 MKE----L-ESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHET---------PQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 344 ~~~----l-~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~---------~~~~~~~~h~~~V~~l~~sp 408 (713)
... . .....|+..+...++.+.... .+++++.||.++||-+.... .+..+-.-|...+++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 322 2 222457766666665543333 89999999999999883322 12223334788999999999
Q ss_pred CCcEEE-EeCCcEEEEecCCC
Q 005123 409 IGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 409 dg~~la-S~Dg~v~iWd~~~~ 428 (713)
||.+++ +.|++|.|||....
T Consensus 520 dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 520 DGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCcEEEEecCCEEEEecCCCh
Confidence 998775 59999999999874
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.1e-18 Score=170.47 Aligned_cols=260 Identities=18% Similarity=0.284 Sum_probs=193.3
Q ss_pred CCcEEEEeCCCCc--e-EEEEeccCCCEEEEEEccCCCE-EEEEeCC-------CcEEEEEcCCCc---------eeeee
Q 005123 165 SGEFTLWNGQSFN--F-EMILQAHDHAIRSMVWSHNDNW-MVSGDDG-------GAIKYWQNNMNN---------VKANK 224 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~-~~~l~~h~~~V~sl~~spdg~~-L~sgs~D-------G~I~vwdl~~~~---------~~~~~ 224 (713)
|+.|.+.+++... + .+.+..|.+.|..|+-+|-... |+++..+ -.+.||.+.... .+..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4566666544322 2 2345567888999999986654 4444332 246799876432 22222
Q ss_pred c-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEc-----cCCCceEEEEEcC--CCCEEEEEeCCCcEE
Q 005123 225 S-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWDVKSVDWHP--TKSLLVSGGKDSLVK 295 (713)
Q Consensus 225 ~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~-----~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~ 295 (713)
. .+-+.|.|+.|.|++..|++-. |..|.+|++..... ...+. .+....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 3456899999999999988876 77899999977655 33332 2455678889998 77777765 479999
Q ss_pred EEECCCCceEEEEc-cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~-~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
.||+|+.++...++ +|...|..+.|+|+.. +|++|+.||.|+|||.|+- ..+.++.+|...|+++.|++..+.+|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988776664 5778899999999765 5678999999999999864 4688999999999999999999999999
Q ss_pred EECCCcEEEEEcCCCC----------------------------ceEEEecccCCCeEEEEEcCCCcEE-EE--eCCcEE
Q 005123 373 GSLDGSIFHWLVGHET----------------------------PQVEIHNVHDNTVWDLAWHPIGYLL-CS--NDHTTK 421 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~----------------------------~~~~~~~~h~~~V~~l~~spdg~~l-aS--~Dg~v~ 421 (713)
++.|..|.+|....-. ..+..+..|++.|++++|+.-.-++ || .||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 9999999999652210 1233556699999999999877544 55 999998
Q ss_pred EEecC
Q 005123 422 FWCRN 426 (713)
Q Consensus 422 iWd~~ 426 (713)
|=++.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87654
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=8.3e-19 Score=173.30 Aligned_cols=247 Identities=22% Similarity=0.388 Sum_probs=191.0
Q ss_pred EEeeCCCCCceEEEEEccCCC-EEEEEECC-------CcEEEEeCCC---------CceEEEEe-ccCCCEEEEEEccCC
Q 005123 137 HTSLNKNRCSINRVLWTPTGR-RLITGSQS-------GEFTLWNGQS---------FNFEMILQ-AHDHAIRSMVWSHND 198 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~-~Latgs~d-------g~V~Iwd~~t---------~~~~~~l~-~h~~~V~sl~~spdg 198 (713)
.+.|..|-+.|..++-+|... .|+|+..+ -.+.||.+.. .+++..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345667889999999999664 45555432 2367898653 23334443 455689999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCce-eeee-----ccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEE-ccC
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNV-KANK-----SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSL-TGH 269 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~-~~~~-----~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h 269 (713)
+.|++-. |..|.+|+++.... ...+ ..+....++-+|++ +++.+++. .|+++..||+++.++...+ .+|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9998776 78999999987654 2222 12455677888988 66777665 4789999999987766555 468
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC--
Q 005123 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-- 344 (713)
Q Consensus 270 ~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-- 344 (713)
...|.++.|+|+.. +|++|++||.|+|||+|.- ..+.++.+|..+|.++.|++. ..+|++++.|..|.+|-..+-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88899999999765 7888999999999999874 467889999999999999994 577889999999999954210
Q ss_pred ---------------------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 ---------------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ---------------------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..+.++..|.+.|++++||..+.-+||+-+.||++.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12456778999999999999888899999999999987764
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=5.1e-18 Score=167.96 Aligned_cols=275 Identities=16% Similarity=0.293 Sum_probs=198.8
Q ss_pred ceEEEEEcc---CCCEEEEEEC----CCcEEEEeC--CCCceEEEE-eccCCCEEEEEEccCCC-----EEEEEeCCCcE
Q 005123 146 SINRVLWTP---TGRRLITGSQ----SGEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDN-----WMVSGDDGGAI 210 (713)
Q Consensus 146 ~V~~v~~sp---dg~~Latgs~----dg~V~Iwd~--~t~~~~~~l-~~h~~~V~sl~~spdg~-----~L~sgs~DG~I 210 (713)
.+.++.|+. ...+||.|+. .+.|.|..+ ++++.+..- ..|...++.+.|.|+.+ +||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 466677773 2346777764 355666543 334333222 35788999999999863 555554 579
Q ss_pred EEEEcCCCc--ee--ee-----eccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCe---eEEEEccCCCceEEEE
Q 005123 211 KYWQNNMNN--VK--AN-----KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVD 277 (713)
Q Consensus 211 ~vwdl~~~~--~~--~~-----~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~---~~~~l~~h~~~V~sl~ 277 (713)
++|.+...+ .. .. ...+...++++.|+. |-++|.+++-|.++.|||++++. ....+.+|...|..|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999987432 11 11 133556899999987 44788899999999999998863 3666788999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceEEEEcc---CCCCeEEEEEcC-CCCEEEEEECC-CeEEEEECCC-CeeEEEe
Q 005123 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQ-NGNWVLTASKD-QIIKLYDIRA-MKELESF 350 (713)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~---h~~~I~si~fsp-dg~~Latgs~D-g~I~IwDl~t-~~~l~~~ 350 (713)
|...+ +.|++++.||.|++||+|..+.-..+.. .......++|+. |-+++|+-..| ..|.|.|+|. ...+..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99854 4899999999999999998664443322 245688899988 56788876554 4799999986 4568899
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-----eEEEecccCCCeEEEEEcCC-CcEEEE-eCCcEEEE
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----QVEIHNVHDNTVWDLAWHPI-GYLLCS-NDHTTKFW 423 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-----~~~~~~~h~~~V~~l~~spd-g~~laS-~Dg~v~iW 423 (713)
++|.+.|+.|+|.|.....|+++++|..+.|||+..-.. .+... ...++|+.|.|++. ..+++. .++++.|-
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999999999998899999999999999999964332 11112 24678999999954 355543 55555543
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=6.9e-19 Score=172.07 Aligned_cols=243 Identities=19% Similarity=0.242 Sum_probs=191.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.|+.|.+.|+|+.|-.+++ |.+|...|.|++|++.+......+. .+...|+.+...++ +.|.+-++|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3558999999999998876 9999999999999999988887787 56788998888876 6778888999999998765
Q ss_pred Cceeeee-----------------------------------------------------ccCCCCeeEEEEec-CCC--
Q 005123 218 NNVKANK-----------------------------------------------------SAHKESVRDLSFCR-TDL-- 241 (713)
Q Consensus 218 ~~~~~~~-----------------------------------------------------~~~~~~V~~l~fs~-dg~-- 241 (713)
...+..- ....+.+.+..+.- +++
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 3211100 01112344444322 222
Q ss_pred EEEEEECCCeEEEEEcCCCeeE----------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ce--EEE
Q 005123 242 KFCSCSDDTTVKVWDFARCQEE----------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RE--LCS 307 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~----------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~--~~--~~~ 307 (713)
+|++|.++|.|.+||+.++..+ .....|...|.++.+.+..+.=++|+.+..+..|+++.. .. ..+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 3667888999999999887433 334568899999999987667788888889999988642 21 122
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...+-.|..+.+-+|++.+|+++.|+.||||..++...+..++-|...|.+++|++ +..++|+++.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 222345688899999999999999999999999999999999999999999999999 7899999999999999986
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1e-17 Score=172.57 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=188.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--------C--------CceEEEEeccCCCEEEEEEccCCCE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--------S--------FNFEMILQAHDHAIRSMVWSHNDNW 200 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--------t--------~~~~~~l~~h~~~V~sl~~spdg~~ 200 (713)
...|..|...|++|.|+++|++||+|+.+|.|.+|... + ....+.+.+|.+.|..++|++|+.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 45788999999999999999999999999999999755 2 3345677889999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-------------
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~------------- 267 (713)
+++++.|..+++||+..+.+...+..|...|..++|.+-+.++++-+.|...+++++.....+....
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9999999999999999999999999999999999999999999999999877777765433222111
Q ss_pred ------cCC----CceEEEEEcCCCCEEEEEeC----CC-----cEEEEECCC-CceEEEEccCCCCeEEEEEcC-----
Q 005123 268 ------GHG----WDVKSVDWHPTKSLLVSGGK----DS-----LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ----- 322 (713)
Q Consensus 268 ------~h~----~~V~sl~~spdg~~L~sgs~----Dg-----~I~IwDl~t-~~~~~~~~~h~~~I~si~fsp----- 322 (713)
.|. .-...++|+|+|.+|++.+. ++ +.++|+-+. .+.+..+......+..+.|++
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 011 12456789999998887642 22 234554332 222333333344444444433
Q ss_pred -------------CCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 323 -------------NGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 323 -------------dg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
-+-.+|+++ ...|+|||..+.+.+.... .|-..|+.++|+. ++.+|+..|.||...+..++..+
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 122344555 4579999999888776554 5788999999998 89999999999998887775544
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=3.3e-18 Score=175.31 Aligned_cols=245 Identities=20% Similarity=0.269 Sum_probs=190.6
Q ss_pred EEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCe
Q 005123 181 ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTT 251 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~ 251 (713)
.+.+|++.|..++|+|- +..||+|++|.+|.||++..+ +.+..+.+|...|..+.|++.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999995 567889999999999998654 3466778999999999999965 67899999999
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~-~I~si~fspdg~~Latg 330 (713)
|.+||+.+++.+.++. |.+-|.+++|+.||.+|++++.|.+|+|||.++++.+..-.+|.+ .-..+.|-.+++++-||
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 999999999999999999999999999999999999988776665 34556677788855555
Q ss_pred E---CCCeEEEEECCCCeeE---EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeE
Q 005123 331 S---KDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVW 402 (713)
Q Consensus 331 s---~Dg~I~IwDl~t~~~l---~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~ 402 (713)
. +++.+-|||-.+.+.- .++. ..+.|.---|.++.+-+.++|-.|+.|+.|.+..+...+..+.. ....-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 4 5778999998776542 3333 33456666677744445566677999999999877755555433 234566
Q ss_pred EEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 403 DLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 403 ~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
.+.|-|..-+=++.....|+|.+..
T Consensus 314 G~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 314 GMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred cccccccccccchHHHHHHHHHhhc
Confidence 7778777655555555566665533
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=9.7e-18 Score=171.95 Aligned_cols=205 Identities=24% Similarity=0.441 Sum_probs=165.7
Q ss_pred eeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCc
Q 005123 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~ 293 (713)
.+.+|...|.+++|++ ++..||+||+|.+|.||++-.. +.+..+.+|...|..|.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 5577999999999999998543 346778899999999999994 568999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-CeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-~V~sl~fsp~~~~~las 372 (713)
|.|||+.+++.+.++. |...|.+++|+.||.+|++.+.|+.|+|||.++++.+.+-.+|.+ .-..+.|-. ++.++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeee
Confidence 9999999999999888 999999999999999999999999999999999999988888875 334455655 5664444
Q ss_pred EE---CCCcEEEEEcCCCCceEEEec-ccCCCeEEEEEcCCC--cEEEE-eCCcEEEEecCCCC
Q 005123 373 GS---LDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIG--YLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs---~DG~I~Iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg--~~laS-~Dg~v~iWd~~~~~ 429 (713)
|- ++..+.+||-.+-...+.+.. ...+.|.---|++|. .+||+ .|+.||.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 43 367899999866554433322 234556666677777 55677 99999999987665
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=1.7e-16 Score=171.06 Aligned_cols=266 Identities=11% Similarity=0.107 Sum_probs=180.8
Q ss_pred EEEECCCcEEEEeCCC-Cc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-Ccee--eeeccCCCCee
Q 005123 160 ITGSQSGEFTLWNGQS-FN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM-NNVK--ANKSAHKESVR 232 (713)
Q Consensus 160 atgs~dg~V~Iwd~~t-~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~-~~~~--~~~~~~~~~V~ 232 (713)
++...++.|++||+.+ ++ .+..+. +.+....+++++++++|++++ .++.|.+|+++. +... ... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3446789999999964 33 334443 346678899999999987764 578899999873 3322 221 2334567
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEE
Q 005123 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELC 306 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~~~ 306 (713)
.++|++++++|++++. ++.|.+||+++.. .+..+. +.....+++++++++++++++ .++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999999888765 8899999996422 222222 234567889999999886555 56899999998643221
Q ss_pred E-----Ec-cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC--C--eeEEEeecC------CCCeEEEEEeCCCCCE
Q 005123 307 S-----FH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA--M--KELESFRGH------RKDVTALAWHPFHEEY 369 (713)
Q Consensus 307 ~-----~~-~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t--~--~~l~~~~~h------~~~V~sl~fsp~~~~~ 369 (713)
. .. ........++|++++++|++++. +++|.+||++. + +.+..+... ......+.++| ++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCE
Confidence 1 11 12344678999999999988876 89999999973 2 334443322 12334688999 6777
Q ss_pred EEEEE-CCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 370 FVSGS-LDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 370 lasgs-~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
|+++. .++.|.+|+++.......+... -......++|++|+.+|. + .+++|.||+++...
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 77664 4789999999665433322211 112456889999996664 3 58999999987544
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=2.7e-16 Score=160.65 Aligned_cols=237 Identities=14% Similarity=0.246 Sum_probs=187.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~ 219 (713)
+....|+.+.|+.|...|.+|+.|| .++|+.+..............|...-|+ ..++|..+.+ ..++++++..+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3455688888999999999999998 7889877755532222223345555564 4566665554 458999988887
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---CCCceEEEEEcCCCCEEEEEe--CCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HGWDVKSVDWHPTKSLLVSGG--KDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~---h~~~V~sl~~spdg~~L~sgs--~Dg~I 294 (713)
.+..+ .....|.++.++ .++|+++-.+. |+|||+++.+.+.++.. +...+.+++++..+.+|+.-+ ..|.|
T Consensus 80 ~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 77765 356788888885 45677776664 99999999998887764 344577777777777888743 36889
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~la 371 (713)
.|||+.+-+.+..+..|++.+.+++|+++|.+||++++.|+ ||||++.+++.+.+|+.-. ..|.+|+|++ +..+|+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLA 234 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEE
Confidence 99999999999999999999999999999999999999996 7999999999999997433 4689999999 789999
Q ss_pred EEECCCcEEEEEcCC
Q 005123 372 SGSLDGSIFHWLVGH 386 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~ 386 (713)
+.|+.++|+||.+++
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998854
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=4.7e-17 Score=181.88 Aligned_cols=262 Identities=19% Similarity=0.267 Sum_probs=196.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce--e----eeeccCCCCeeEEEEec
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV--K----ANKSAHKESVRDLSFCR 238 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~--~----~~~~~~~~~V~~l~fs~ 238 (713)
+.++||+++....-...-.....|+|++|++.. ++|+.|+.+|.|.+||+..+.. . .....|...|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998874433334457899999999965 6778889999999999987654 2 22246888999999987
Q ss_pred CCCE--EEEEECCCeEEEEEcCCCeeEE------EEc------cCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--
Q 005123 239 TDLK--FCSCSDDTTVKVWDFARCQEER------SLT------GHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-- 301 (713)
Q Consensus 239 dg~~--Las~s~Dg~I~iwDl~~~~~~~------~l~------~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-- 301 (713)
+..- |++++.||.|..|+++.-.... ... .....+++++|.+ +-+.+++|+++|.|..-+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 6544 9999999999999886432210 001 1234688999988 567899999999988743322
Q ss_pred -Cc-----eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 302 -GR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 302 -~~-----~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.. ....+..|.+.|+++.++|=+..++..+.|.+|+||... ....+..+..+...|++++|||....+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 123455688999999999966555555559999999988 67778888888888999999998888999999
Q ss_pred CCCcEEEEEcCCCCc-eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.||.|.|||+..... .+.....+....+.+.|++++.+|+. ..|++.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999954332 22233334667778889998988765 779999999853
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=165.84 Aligned_cols=232 Identities=16% Similarity=0.293 Sum_probs=184.9
Q ss_pred CCCceEEEEEc-------cCCCEEEEEECCCcEEEEeCCCCceEEEEec--cC---CCEEEEEEccCCCEEEEEeCCCcE
Q 005123 143 NRCSINRVLWT-------PTGRRLITGSQSGEFTLWNGQSFNFEMILQA--HD---HAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 143 H~~~V~~v~~s-------pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~--h~---~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
....|...+|- |+..++|+.+.+.-|++||.-++++...+.. |- .+..+++|++||..|++|. ...|
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI 181 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence 34567777775 5778999999999999999999998877754 32 2456899999999998876 5889
Q ss_pred EEEEc-CCCceee---e----eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC
Q 005123 211 KYWQN-NMNNVKA---N----KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 211 ~vwdl-~~~~~~~---~----~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd 281 (713)
+|||+ +.+.... + ..+..+-|.+++|+|.. +.+++++...++-|+.-.....+..+.+|.+.|+.+.|.++
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99998 4443211 1 12346678999999965 48999999999999988888899999999999999999999
Q ss_pred CCEEEEEeC-CCcEEEEECCCC-ceEEEEccCCC-CeEEE--EEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCC
Q 005123 282 KSLLVSGGK-DSLVKLWDAKSG-RELCSFHGHKN-MVLCV--KWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRK 355 (713)
Q Consensus 282 g~~L~sgs~-Dg~I~IwDl~t~-~~~~~~~~h~~-~I~si--~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~ 355 (713)
|+.|++|+. |-.|.+||+|.. ..+..+..|.. .-..| ...+++++|++|+.||.|++||+++ ++.+..+..+..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 999999875 778999999974 34555655544 33334 4467899999999999999999998 777888888999
Q ss_pred CeEEEEEeCCCCCEEEEEECC
Q 005123 356 DVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~D 376 (713)
.|+.++++| .--++++++..
T Consensus 342 ~vNgvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNP-IMPILATSSGQ 361 (406)
T ss_pred cccceecCc-ccceeeeccCc
Confidence 999999999 56666666643
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.9e-17 Score=185.14 Aligned_cols=287 Identities=17% Similarity=0.308 Sum_probs=210.7
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc---CCCEEEEEEcc--CCCEEEEEeCCCcEEEEEc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSH--NDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~sp--dg~~L~sgs~DG~I~vwdl 215 (713)
.+....-..+.|++-...++++...-.|+|||.+.++....+..+ ...|+.+++.. |..+|++++.||.|+||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344446778899999999999998889999999998887777654 45688888865 3468899999999999973
Q ss_pred CCC-----ceeeeecc-------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcC-C
Q 005123 216 NMN-----NVKANKSA-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHP-T 281 (713)
Q Consensus 216 ~~~-----~~~~~~~~-------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~sp-d 281 (713)
... +++..... ..+.-.-++|.....+|+++++-..|+|||..+...+..+. +....|+++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 221 22222211 11111345676666677777778899999998877766654 3445677776654 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCC--eEEEEEcCCCC-EEEEEECCCeEEEEECCCCee--EEEeecC
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNM--VLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE--LESFRGH 353 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~--I~si~fspdg~-~Latgs~Dg~I~IwDl~t~~~--l~~~~~h 353 (713)
|+.|++|..||.|++||.+... .+...+.|... |..+.+.+.|- .|++|+.||.|++||++.... ...+..|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 6899999999999999998643 46667778887 99999988654 499999999999999997422 1222223
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE-----EecccCCCeEEEEEcCCCcEEEE--eCCcEEEE
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-----IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFW 423 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~-----~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iW 423 (713)
.+.++++..+. ...+||+|+. +.|+||++........ +.....+.+.|++|+|...++|. .|.+|.||
T Consensus 1301 ~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 23589999998 8899999998 8999999854332111 11123467899999999977753 99999999
Q ss_pred ecCCCC
Q 005123 424 CRNRPG 429 (713)
Q Consensus 424 d~~~~~ 429 (713)
......
T Consensus 1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred ecCCcC
Confidence 876543
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=179.64 Aligned_cols=239 Identities=15% Similarity=0.292 Sum_probs=194.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|++|++.|+|++|+.||+++|+|+.|..|.||+.+-...+ -..|.+.|.|+.|+|-...|++++- ...-+|..+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~ 122 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPE 122 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcch-hhccccChh
Confidence 3579999999999999999999999999999999985532222 1358999999999999999998875 457789776
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEEEEEcCCC-----CEEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTK-----SLLVSG 288 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~sl~~spdg-----~~L~sg 288 (713)
...+.+. .....|.+++|..||.+|+.|-.||+|.|-+-. ++....+. +..+.|.+|+|+|.. ..+++.
T Consensus 123 qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 123 QKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 6554432 345678999999999999999999999998753 33333333 467889999999843 578888
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
....++.+|.+. |+.+.+-+...-.-.|+.+-++|++++.|+.|+.+.+|-. .|-.+.++...+.+|++++..| ++.
T Consensus 200 DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~P-NsQ 276 (1081)
T KOG1538|consen 200 DWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKP-NSQ 276 (1081)
T ss_pred eccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEcc-CCc
Confidence 888889988876 5555544444556788999999999999999999999974 4777888877889999999999 899
Q ss_pred EEEEEECCCcEEEEEc
Q 005123 369 YFVSGSLDGSIFHWLV 384 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~ 384 (713)
.++.|+.||+|..|++
T Consensus 277 ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEEEccCeeehhhh
Confidence 9999999999999876
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=5.1e-17 Score=160.90 Aligned_cols=239 Identities=16% Similarity=0.323 Sum_probs=182.8
Q ss_pred eCCCCCceEEEEEccCCC-----EEEEEECCCcEEEEeCCCCc--e--EEEE-----eccCCCEEEEEEcc-CCCEEEEE
Q 005123 140 LNKNRCSINRVLWTPTGR-----RLITGSQSGEFTLWNGQSFN--F--EMIL-----QAHDHAIRSMVWSH-NDNWMVSG 204 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~-----~Latgs~dg~V~Iwd~~t~~--~--~~~l-----~~h~~~V~sl~~sp-dg~~L~sg 204 (713)
-..|.-+++.+.|.|+.+ +|||++ ..++||.+...+ . ...+ ..+...+++..|+. |-++|.++
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 357888999999999873 455544 379999876422 1 1111 23456799999987 45788899
Q ss_pred eCCCcEEEEEcCCC---ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccC---CCceEEEE
Q 005123 205 DDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDVKSVD 277 (713)
Q Consensus 205 s~DG~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h---~~~V~sl~ 277 (713)
+-|-+..|||++++ .+...+..|...|.+|+|...+ ..||+++.||.||+||++..+....+... ......++
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 99999999999986 3567778999999999999865 56899999999999999886654444322 45688899
Q ss_pred EcC-CCCEEEEEeCC-CcEEEEECCC-CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCee------E
Q 005123 278 WHP-TKSLLVSGGKD-SLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE------L 347 (713)
Q Consensus 278 ~sp-dg~~L~sgs~D-g~I~IwDl~t-~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~------l 347 (713)
|++ |-+++++-..| ..|.|.|+|. ...+.++.+|.+.|+.|+|.| ....|++++.|..+.|||+...-. +
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 998 55677765554 5699999997 456788999999999999999 567899999999999999975322 2
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
..+. -...|..|.|++...++|+.+... ++.|.
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 2333 567899999998778888877644 44443
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=176.18 Aligned_cols=260 Identities=13% Similarity=0.269 Sum_probs=192.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEE-c-------cCCCEEEEEeCCCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW-S-------HNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~-s-------pdg~~L~sgs~DG~I~vw 213 (713)
.|...|.|+.|+.+...+.+++.+ .+.+|+..+......+..-+..|....+ - ...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 567778899999888766666544 5555543322222222222222211111 0 123578889999999988
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+ ..+++...+..|.+.|.+-.|++||.-|+++++||.|++|.- ++-...++.-....|.|++|.|+.+.++.+. .+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 6 456677777899999999999999999999999999999983 4433344444667899999999887776654 367
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+.|=.+.-...+..++.|++-|.++.|++..++|++|++|-..+|||.. |..+..-..|+..|++++|+| + ..++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeee
Confidence 8888887777788899999999999999999999999999999999976 777888888999999999999 4 666666
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEE
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~ 421 (713)
|.+ +++ +.....+.|..++|++||..++. ..|.+.
T Consensus 245 S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 245 SYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 543 333 33345688999999999976654 444443
No 186
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=8.8e-17 Score=161.40 Aligned_cols=232 Identities=16% Similarity=0.266 Sum_probs=181.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MN 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~ 218 (713)
-..+|+|.+|+.|...+|++..+..|.||.... .+..+++..|+..|++|+|++..+.|++++.|..-+||... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 456899999999999999999999999998655 45678899999999999999999999999999999999983 33
Q ss_pred --ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----EEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 --NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 --~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+....+..++..++++.|++.++.|++++.-+.|.||-++....- ..-+.+.+.|++++|++++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 334445678899999999999999999999999999988654321 12234667899999999999999999999
Q ss_pred cEEEEECC-----C-------------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecC
Q 005123 293 LVKLWDAK-----S-------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGH 353 (713)
Q Consensus 293 ~I~IwDl~-----t-------------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h 353 (713)
+++||..- + |..+.++....+.|..+.|+++|+.|+-.+.|..|.+-|..... .+.....-
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99999541 1 12233333456789999999999999999999999999987654 23333333
Q ss_pred CCCeEEEEEeCCCCCEEEEEECC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~D 376 (713)
.-+..++.|-. +..++.++.|
T Consensus 249 ~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeec--CCceeecCCC
Confidence 35566666653 3334444444
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.9e-17 Score=179.02 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=168.6
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
+..|+|||..... ...+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.... .........++|++|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987655 55677788889999999999999877643 3699999988764332 22233445789999999
Q ss_pred EEEEEE-CCCeEEEE--EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceEEEEccCCCCeE
Q 005123 242 KFCSCS-DDTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNMVL 316 (713)
Q Consensus 242 ~Las~s-~Dg~I~iw--Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~-~~~~~~~~h~~~I~ 316 (713)
.|+.++ .+|.+.|| |+.+++ ...+..+...+.+++|++|++.|+.++ .++...||+++.. .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57765555 665554 445566667788999999999877665 5678888876432 222333 3333 4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC-CCCceEEEec
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG-HETPQVEIHN 395 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~-~~~~~~~~~~ 395 (713)
++.|++||++|++.+.++ |.+||+.+++.......+ ...++.|+| ++++|+.++.++.+.+|++. ........+.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 678999999999887765 666999988754333222 345788999 78899999999988888763 2233445555
Q ss_pred ccCCCeEEEEEcCC
Q 005123 396 VHDNTVWDLAWHPI 409 (713)
Q Consensus 396 ~h~~~V~~l~~spd 409 (713)
.|.+.+.+.+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 77888999999974
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.3e-18 Score=176.96 Aligned_cols=289 Identities=21% Similarity=0.326 Sum_probs=222.9
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC--CCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd--g~~L~sgs~DG~I~v 212 (713)
+...|.+|.+.|+.|.|+..|+.|++|+.|..|.+||..+.+....+ .+|...|.-..|.|. ...|++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45679999999999999999999999999999999999887766555 578888888888774 478999999999999
Q ss_pred EEcCCCc-e--eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc---cCCC---ceEEEEEcCCC
Q 005123 213 WQNNMNN-V--KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGW---DVKSVDWHPTK 282 (713)
Q Consensus 213 wdl~~~~-~--~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~---~V~sl~~spdg 282 (713)
-.+.... + ...+..|.+.|..++.-++. ..|.+++.|+.|.-+|++.......+. .+.. ...+|+.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8765432 2 33446788999999998876 458999999999999998765433332 2223 56788888855
Q ss_pred C-EEEEEeCCCcEEEEECCCCce------EEEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C---
Q 005123 283 S-LLVSGGKDSLVKLWDAKSGRE------LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--M--- 344 (713)
Q Consensus 283 ~-~L~sgs~Dg~I~IwDl~t~~~------~~~~~------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t--~--- 344 (713)
. .+++++.|-.+++||.+.-.. +.++. .....|++++|+.++.-|+++..|-.|++|.-.. +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4 899999999999999875322 22221 2345699999998887788888888899995332 2
Q ss_pred -------eeE-EEeecCCC--CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 345 -------KEL-ESFRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 345 -------~~l-~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
..+ ..+++|.. .|..+-|---...++++||+-|.|.||+..+.. ++.+..+....|+||.-+|---+||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCCCchhh
Confidence 122 33788864 577777643268899999999999999986655 4455555555899999999998888
Q ss_pred E--eCCcEEEEec
Q 005123 415 S--NDHTTKFWCR 425 (713)
Q Consensus 415 S--~Dg~v~iWd~ 425 (713)
+ -|..||||.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 6 8999999986
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.7e-15 Score=163.27 Aligned_cols=239 Identities=9% Similarity=0.130 Sum_probs=164.2
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCC-Cce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS-FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t-~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~ 219 (713)
+....+++++++++|++++ .++.|.+|++.. ++. +.... .......++|++++++|++++. ++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999988765 478899999863 332 22222 2345778999999999988764 7899999997432
Q ss_pred ----eeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEE-----Ec-cCCCceEEEEEcCCCCEEEEE
Q 005123 220 ----VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-----LT-GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 220 ----~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~-----l~-~h~~~V~sl~~spdg~~L~sg 288 (713)
.+..+ .......+++++++++++++++ .++.|++||+++...+.. .. ........++|++++++|+++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 12211 2234567788999999886655 569999999976332211 11 123456789999999999888
Q ss_pred eC-CCcEEEEECCC--Cc--eEEEEccC------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCee----EEEeec
Q 005123 289 GK-DSLVKLWDAKS--GR--ELCSFHGH------KNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKE----LESFRG 352 (713)
Q Consensus 289 s~-Dg~I~IwDl~t--~~--~~~~~~~h------~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~~~----l~~~~~ 352 (713)
+. +++|.+||++. ++ .+.++... ......+.|+|++++|+++.. ++.|.+||+..... +..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 32 23333211 123346889999999998864 68999999864332 222221
Q ss_pred CCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCC
Q 005123 353 HRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 387 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~ 387 (713)
......++|++ ++++|+++. .+++|.+|+++..
T Consensus 273 -~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 273 -ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -cccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 23456889999 566666555 5899999998643
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-16 Score=152.06 Aligned_cols=231 Identities=17% Similarity=0.225 Sum_probs=179.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.|.+-+|++.+++|++|+.+|.|.++.+++- ..+....+|+..|..++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4556689999999999999999999987531 2344557899999999997 44566665 599999987
Q ss_pred CCCeeE------EEEc-------cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCC
Q 005123 258 ARCQEE------RSLT-------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (713)
Q Consensus 258 ~~~~~~------~~l~-------~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg 324 (713)
+..... ..+. ..--.|+++.+.|..+-|+.++.|+.++.||+++|+..+++++|.+.|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 543221 1110 112358999999988777788899999999999999999999999999999985555
Q ss_pred CEEEEEECCCeEEEEECCCCeeEEEeecC----------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 325 NWVLTASKDQIIKLYDIRAMKELESFRGH----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 325 ~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
..|++|++||++||||+++.+++..+... ..+|-+++. +++++++|+. -.+.+|+++..+....+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 66999999999999999999998877532 235677775 5667777654 489999998776544443
Q ss_pred cccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 395 NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 395 ~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
. ...|..+.|..|..++++..++|.-|.++.
T Consensus 245 i--pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 I--PARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred c--ccceeEeeeecceEEEeccccceeeeeecc
Confidence 2 567889999999888888899999998754
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.6e-17 Score=177.44 Aligned_cols=251 Identities=20% Similarity=0.303 Sum_probs=189.2
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC--------CceeeeeccCCCCeeEEEEecCCCEEEEEECC
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~--------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
...++..|.+.|+.++|.+....|++++.||+|++|++.. -+.+.++.+|.+.|.|+++..++..+++++.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446677889999999999999999999999999999832 14567789999999999999999999999999
Q ss_pred CeEEEEEcCC----------CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC--CCCeEE
Q 005123 250 TTVKVWDFAR----------CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH--KNMVLC 317 (713)
Q Consensus 250 g~I~iwDl~~----------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h--~~~I~s 317 (713)
|+|+.|++-. ......+.+|.+.|+.++++.....|++++.||+|++|+...... ++|... .+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 9999996531 123456778999999999999999999999999999999876554 334322 223445
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecC-------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 318 VKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGH-------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 318 i~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+.+-... ...++...-+.--++|......+..+... ...+..+.+++ +..+.+++..|+.|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceeccccccccc
Confidence 5554332 22333333333344444444444444321 13477888998 779999999999999999987775
Q ss_pred eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
.... .+|...|+++++.++|.++.+ .|+.+++|.++.....
T Consensus 524 l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 524 LHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred chhe-eeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 5544 468999999999999988865 9999999998655443
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.4e-16 Score=175.98 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=160.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEE-
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW- 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vw- 213 (713)
.+..|...|.+.+|||||++|++++.+ ..|++||+.+++... +........+++|++||+.|++++ .+|.+.||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 456788899999999999999987754 369999998875432 222233445789999999888764 67876665
Q ss_pred -EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 -QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 -dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|+.+++.. .+..+...+.+.+|++|++.|+.++ .++...||++... .....+ .+.. .++.|++|+++|++++.
T Consensus 277 ~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 277 MGANGGTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 56555543 4455666788999999999877655 5778888876432 222223 3333 46789999999988887
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl--~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++ |.+||+.+++........ ...+++|+|||++|++++.++.+.+|++ .+++.+..+..|.+.+...+|+|
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 55 666999988755433222 3467889999999999999998888876 35778888888888899999998
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1e-15 Score=156.52 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=184.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--CeEEEEEcCCCeeE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE 263 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--g~I~iwDl~~~~~~ 263 (713)
...+..+.|..|...|.+|+.|| .++|+.+..............|..+-|+ ..++|..+.+ +.++++++++...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577778998888999999888 5777776655433333334455556665 4455555443 46999999988888
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC---CCCeEEEEEcCCCCEEEEE--ECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---KNMVLCVKWNQNGNWVLTA--SKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---~~~I~si~fspdg~~Latg--s~Dg~I~I 338 (713)
..+. ....|.+|.++ .++|+++-++. |+|||+++.+.+.++... ...+.+++++.++.||+.- ...|.|.|
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7776 56789999998 45677776654 999999999998887643 3446666777777799853 35789999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS- 415 (713)
||+.+.+.+..+..|++.+-+++|++ ++.+|||+|+.|+ |+||.+.++.++.++..+-. ..|.+|+|++++.+|+.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999999999 8999999999997 89999999988888776533 46899999999988864
Q ss_pred -eCCcEEEEecCCCC
Q 005123 416 -NDHTTKFWCRNRPG 429 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~ 429 (713)
+.++|.||.++...
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 88999999997654
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7e-16 Score=160.37 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=159.8
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-- 309 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-- 309 (713)
..++|+.++..|++++.||++|||+..+...+.....|...|.+++|++|+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999988888888888899999999999999999999999 89999999997766554
Q ss_pred cCCCCeEEEEEcCCC---CEEE--EEECCCeEEEEECCCCee-----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 310 GHKNMVLCVKWNQNG---NWVL--TASKDQIIKLYDIRAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 310 ~h~~~I~si~fspdg---~~La--tgs~Dg~I~IwDl~t~~~-----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
..+..+..+.|+.|+ .+++ ....-+.|+.||+..++. .+....-...|++++.+. ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 233456778888876 3333 333455677777654332 122222345799999998 89999999999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
.|++..+-.....+...|...|+.|.|+||.+.+++ .|..+.|..+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999998888777888899999999999999988865 89999999886533
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.3e-16 Score=171.21 Aligned_cols=257 Identities=18% Similarity=0.286 Sum_probs=184.7
Q ss_pred EccCCCEEEE--EECCCcEEEEeCCCC-ceE----EEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc----
Q 005123 152 WTPTGRRLIT--GSQSGEFTLWNGQSF-NFE----MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN---- 219 (713)
Q Consensus 152 ~spdg~~Lat--gs~dg~V~Iwd~~t~-~~~----~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~---- 219 (713)
|+.+.+++|+ ++..|.|-||++..- ++- -.+ .....|+.+.|.| |...|+++++||.|+||.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4445566664 466789999997752 221 111 1356799999998 66799999999999999987653
Q ss_pred ---eeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 220 ---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 220 ---~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
....+..|.+.|++|.|++- .+.|++++.|-+|++||+.+.+....+.+|.+.|.+++|+++|+.+++.++||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34556789999999999984 47799999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceE-EEEccC-CCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCe--eEEEeecCC-CCeEEEEEeCCC
Q 005123 296 LWDAKSGREL-CSFHGH-KNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMK--ELESFRGHR-KDVTALAWHPFH 366 (713)
Q Consensus 296 IwDl~t~~~~-~~~~~h-~~~I~si~fspdg~~Latgs~Dg----~I~IwDl~t~~--~l~~~~~h~-~~V~sl~fsp~~ 366 (713)
+|+-++++.. +.-++- ...-..|.|.-||++|++.+.|. .|.+||..+.. .+.+..... -.+.--.+..|.
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 9999876542 222211 12345677888999999877654 68888876533 232221111 112222345556
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe--EEEEEcCC
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPI 409 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V--~~l~~spd 409 (713)
+.+|++|-.|..|++|.+-.+...+.-+..|...+ ..|+|...
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K 870 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQK 870 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecc
Confidence 67888999999999999966655444443333322 23455543
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.1e-16 Score=159.94 Aligned_cols=192 Identities=19% Similarity=0.349 Sum_probs=156.0
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEE--ccCC-CCe
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHK-NMV 315 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~~~~~~~--~~h~-~~I 315 (713)
+.++++..+|+|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||+|+......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4678999999999999999986655443 3343 456
Q ss_pred EEEEEcCCCCEEEEEE----CCCeEEEEECCCCee-EEE-eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 316 LCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 316 ~si~fspdg~~Latgs----~Dg~I~IwDl~t~~~-l~~-~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.|++.+-.++.+++|+ .|-.|.+||+|..+. +.. +..|...|++|.|+|.+.++|++||.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777766788888876 366899999998776 444 4579999999999999999999999999999999976543
Q ss_pred eEEE--ecccCCCeEEEEEcCCC--cEEE-EeCCcEEEEecCCCCCcc
Q 005123 390 QVEI--HNVHDNTVWDLAWHPIG--YLLC-SNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 390 ~~~~--~~~h~~~V~~l~~spdg--~~la-S~Dg~v~iWd~~~~~~~~ 432 (713)
.-.+ ...|...|.++.|..++ ++.| +.+++..+|+++...+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 2222 22367789999999998 6555 599999999998877544
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.7e-16 Score=154.08 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=182.4
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
...+..|.+.|+++.|-.+++ |++|...|.|++|++.+......+. .+...|+.+...++ ..|.+-+.|..+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 445668999999999987655 8899999999999999998777777 56778888888877 56888889999999998
Q ss_pred CCCeeEEE--------------E---------------------------------------ccCCCceEEEEEcCC-CC
Q 005123 258 ARCQEERS--------------L---------------------------------------TGHGWDVKSVDWHPT-KS 283 (713)
Q Consensus 258 ~~~~~~~~--------------l---------------------------------------~~h~~~V~sl~~spd-g~ 283 (713)
.-...+.. + ....+.+.|..|..+ +.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 54211100 0 011233556554432 22
Q ss_pred --EEEEEeCCCcEEEEECCCCceE----------EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--e--eE
Q 005123 284 --LLVSGGKDSLVKLWDAKSGREL----------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--K--EL 347 (713)
Q Consensus 284 --~L~sgs~Dg~I~IwDl~t~~~~----------~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~--~l 347 (713)
+|++|.++|.|.+||+.++..+ .....|...|.++.|.+.-+.=++|+.+..+..|++... . .-
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 5678889999999999987443 333468889999999875555567777888999988632 2 12
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.++....-.|..+.+-+ |++++||++.|++|+||+.++... +.++.-|...|++++|+++..++| |.|..|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22333345578888888 899999999999999999988775 455567999999999999976664 59999999986
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.9e-14 Score=144.79 Aligned_cols=236 Identities=18% Similarity=0.288 Sum_probs=173.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCC------CcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDG------GAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~D------G~I~vwdl~~~ 218 (713)
...+++|+.|...+++|..+| ++||+++-.+.......+.+.+.-+...-..++|+ +|+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 445599999999999999887 99999887555444433333332222222456666 44333 57999996666
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEEccC--CCceEEEEEcCCCCEEEE-EeCCCcE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGH--GWDVKSVDWHPTKSLLVS-GGKDSLV 294 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h--~~~V~sl~~spdg~~L~s-gs~Dg~I 294 (713)
+.+.++ .....|.++.+.++ .|++.- +++|+||.+. +-+.++.+... ...+.+++-+.+..+||. |-.-|.|
T Consensus 86 ~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666655 46788999999755 455544 5689999987 44445554422 233444444444445554 3456899
Q ss_pred EEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCE
Q 005123 295 KLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEY 369 (713)
Q Consensus 295 ~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~ 369 (713)
.|-|+...+. ...+.+|.+.|.|++++-+|..||+++..|+ |||||..+++.+.+++.- ...|.+++||+ +..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccE
Confidence 9999987655 4778899999999999999999999999996 899999999999998743 35799999999 8999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 005123 370 FVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~ 387 (713)
||++|+.|+|.||.++..
T Consensus 241 LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEcCCCeEEEEEeecC
Confidence 999999999999998653
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=2.7e-15 Score=172.06 Aligned_cols=250 Identities=13% Similarity=0.192 Sum_probs=181.9
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
+...|..|+..|..++.+++. .++++|+.||+|+|||+.+. +...++......+.++.....++.+|+++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 345678899999999998876 99999999999999996542 2233444457889999999999999999999
Q ss_pred CcEEEEEcCCCce-------eeeeccC--CCCeeEEEEec-CCC-EEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceE
Q 005123 208 GAIKYWQNNMNNV-------KANKSAH--KESVRDLSFCR-TDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVK 274 (713)
Q Consensus 208 G~I~vwdl~~~~~-------~~~~~~~--~~~V~~l~fs~-dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~ 274 (713)
|.|++.+++..+. ......+ ...|...+|.. +.. .|+.+...+.|..||++.......++ ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 9999999876321 1111111 22233334433 233 68888889999999998766554443 3457899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC---CCCEEEEEE--CCCeEEEEECCCCeeEE
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ---NGNWVLTAS--KDQIIKLYDIRAMKELE 348 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp---dg~~Latgs--~Dg~I~IwDl~t~~~l~ 348 (713)
+++.++.++++++|+..|.+.+||+|-+..+..+. .+...|..+..++ ...++++++ ..+.|.+|++.++.+-.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999999888887764 3456777777766 234555444 57789999999987666
Q ss_pred EeecCCC-------------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 349 SFRGHRK-------------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 349 ~~~~h~~-------------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++...++ ....+.+.. .+.++++|+.|..|+.||...
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCC
Confidence 5543311 112223333 567899999999999999843
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2e-16 Score=164.39 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=158.4
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-- 225 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-- 225 (713)
.+++|+.+|..|++++.||++|||+..+...+.....|.+.|.++.|++|+++|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888889999999999999999999999999 99999999996655543
Q ss_pred cCCCCeeEEEEecCC---CE--EEEEECCCeEEEEEcCCCee-----EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 226 AHKESVRDLSFCRTD---LK--FCSCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg---~~--Las~s~Dg~I~iwDl~~~~~-----~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
..+.....+.|+.|+ .+ ++.....+.|+.||+..... .+........|.+++++.+|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334456777788777 33 33334456677777643222 122222345799999999999999999999999
Q ss_pred EEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 296 LWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 296 IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
|++..+-+.+..+ +.|...|+.+.|+||.+++++.+.|..+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988877665 5688999999999999999999999888887765
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.7e-15 Score=169.53 Aligned_cols=243 Identities=18% Similarity=0.275 Sum_probs=183.5
Q ss_pred CCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCce--EE----EEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEE
Q 005123 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF--EM----ILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~--~~----~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vw 213 (713)
-...|+|++|++. ..+||.|+.+|.|.+||+..+.. .. ....|...|+.+.|..+.. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4578999999995 57788889999999999887655 22 2346889999999977554 49999999999999
Q ss_pred EcCCCceee------eec------cCCCCeeEEEEecCC-CEEEEEECCCeEEEEEc---CCCe-----eEEEEccCCCc
Q 005123 214 QNNMNNVKA------NKS------AHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDF---ARCQ-----EERSLTGHGWD 272 (713)
Q Consensus 214 dl~~~~~~~------~~~------~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl---~~~~-----~~~~l~~h~~~ 272 (713)
+++.-.... ... .....+++++|.+.. ..+++|+++|.|..-+- .... ....+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876532210 001 223467889998744 67999999999887332 2221 12345568899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eeEE
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--KELE 348 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~--~~l~ 348 (713)
|.++.++|-+..++..+.|-+|+||... ....+..+..+...|++++||+.. ..|+++..||.|.|||+... +.+.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999966555555559999999988 666777777778889999999954 66778888999999999743 3455
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.+....+.+.|++ .+.+|++|...|+|.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 5555556667778887 799999999999999999954
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=6.1e-17 Score=169.17 Aligned_cols=236 Identities=17% Similarity=0.253 Sum_probs=206.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+..-..+.++.+|++|+.|+..|.|..+|+.++++...+. ..+.|.++.|..+..+||++- ...++||| ..+..+..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEee
Confidence 4455678999999999999999999999999999888764 467899999998888888775 55799999 45677777
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
++.+ ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 7744 579999999999999999999999999999999999998888899999999988889999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.+..+-+|.+.|.+|++.+ +++++||++.|..|+|||++....+..... ......+++|..|.+.++....|.||.-
T Consensus 285 PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred hHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCCeeeeehh
Confidence 9988999999999999999 899999999999999999988775555444 3567889999999999999999999965
Q ss_pred CCC
Q 005123 426 NRP 428 (713)
Q Consensus 426 ~~~ 428 (713)
...
T Consensus 362 ~~~ 364 (545)
T KOG1272|consen 362 ALK 364 (545)
T ss_pred hhc
Confidence 443
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=4.5e-16 Score=164.75 Aligned_cols=210 Identities=21% Similarity=0.350 Sum_probs=173.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
.+.|+.++.||.+.|.+ +.++..+.+..|.++|.|-.|++||.-|+++++||.|++|.- ++-+..++......|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence 35788899999999987 456778889999999999999999999999999999999973 4544555556778999999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCe
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I 315 (713)
|.++.+.++.|. .+.+.|=.+.-...+...+.|.+-|.+++|++..+++++|++|-..+|||.. |..+..-..|...|
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 999988777664 3467787777777777888999999999999999999999999999999965 67777777899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
++++|+|+ +.+++++.+ +++ .-+...+.|..++||+ ++..+++|+..|.|.+-.
T Consensus 231 TSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcC-CCceeeccccCceEEEee
Confidence 99999999 666666532 333 1122457899999999 899999999999876543
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=167.23 Aligned_cols=263 Identities=17% Similarity=0.275 Sum_probs=215.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...-..+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++- ...+.|||-..-++ ..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl-HC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL-HC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE-ee
Confidence 34567889999999999999999999999999998888764 67899999998888887765 57899998654443 33
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
++. ...|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-+|..+|+|.+|...+.+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 333 4578899999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.+.++..|.+.|.+|++.++|+|++|.+.|+.|+|||+++...+.++.. ......+++|. ..+||. +....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq--kglLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ--KGLLAL-SYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc--ccceee-ecCCeeeeeh
Confidence 9988889999999999999999999999999999999999888877765 45667888874 444444 4445899995
Q ss_pred cCCC--CceEEEeccc--CCCeEEEEEcCCCcEEE
Q 005123 384 VGHE--TPQVEIHNVH--DNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 384 ~~~~--~~~~~~~~~h--~~~V~~l~~spdg~~la 414 (713)
-... .........| .+.|.+|.|.|-..+|+
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG 395 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG 395 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence 3222 1111122222 35899999999776665
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=2.9e-15 Score=150.62 Aligned_cols=244 Identities=11% Similarity=0.194 Sum_probs=192.0
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc-CC
Q 005123 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF-AR 259 (713)
Q Consensus 184 ~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl-~~ 259 (713)
.....|+|.+|+.|...++++..+..|.||...... ...+++.|...|++|+|++..+.|++|+.|..-++|.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999877654 67778899999999999999999999999999999998 33
Q ss_pred C--eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE----EEEccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 260 C--QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 260 ~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~----~~~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
+ +....+..+...+++|.|+|.++.|++|+....|.||-++..+.- ..-+.+.+.|++++|++++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3 345556668899999999999999999999999999987653321 1224467889999999999999999999
Q ss_pred CeEEEEECC-----C-------------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec
Q 005123 334 QIIKLYDIR-----A-------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (713)
Q Consensus 334 g~I~IwDl~-----t-------------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~ 395 (713)
+.++||..- + +..+.++....+.|..+.|++ .+..|+-.+.|..|.+-|............
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchh
Confidence 999998642 1 223444545667899999999 899999999999999999866653333333
Q ss_pred ccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 396 VHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 396 ~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
...-+..++.|-.+..+++. .|..=.++..+..
T Consensus 247 ~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEE 280 (361)
T ss_pred hccCCceeeEeecCCceeecCCCCCceEEEeccc
Confidence 33367788888877766654 5544444544443
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=166.94 Aligned_cols=212 Identities=21% Similarity=0.367 Sum_probs=164.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC--CCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd--g~~L~sgs~DG~I~v 212 (713)
+...|.||.+.|+|++|+.||.+|++|+.|-.|.|||.-..+++..+ ++|...|.++.|-|. ++++++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34678999999999999999999999999999999998887777666 689999999999884 568889999999999
Q ss_pred EEcCCC----------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee----------EEEEccCCC
Q 005123 213 WQNNMN----------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE----------ERSLTGHGW 271 (713)
Q Consensus 213 wdl~~~----------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~----------~~~l~~h~~ 271 (713)
+|+... +....+..|...|..|+..+++ ..+.++++||+|+-+|++.... +..+....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999842 2334456788899999999998 8899999999999999975221 111122234
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------Cc----------eEEEEc-cC--------CC---CeEEEEE
Q 005123 272 DVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS--------GR----------ELCSFH-GH--------KN---MVLCVKW 320 (713)
Q Consensus 272 ~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t--------~~----------~~~~~~-~h--------~~---~I~si~f 320 (713)
...|+.++| +..+|++|+.|-..++||.+. +. ++..+. +| .. .++-++|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 577999998 456899999999999999531 11 222221 11 11 2566789
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+|+|.-|++.-..-.|+++|+..++..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999988887776778999999876543
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=160.24 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=158.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEE-----ccCCCEEEEEeCCCcEEEEEcC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVW-----SHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~-----spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.++...++-.|++|+..-.+ .+++|+...+..+ .........-+|-+| .+++--|++|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 45555566667777765433 6888887642211 111111122233344 3345567888888999998866
Q ss_pred CCceeeee----ccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCC--------------Cee--------------E
Q 005123 217 MNNVKANK----SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR--------------CQE--------------E 263 (713)
Q Consensus 217 ~~~~~~~~----~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~--------------~~~--------------~ 263 (713)
..+..+.+ ...+..|+++.|-+.+ ..++++-.+|.+++||.+. +.. +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 54332222 1234789999998854 5677788899999997631 111 1
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+....+.|+.++|++||++||+.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11112345789999999999999999999999999999888887777778899999999999999999999999999999
Q ss_pred CeeEEEeecCCCCeEEEEEeC
Q 005123 344 MKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp 364 (713)
.+.+..-.+|+++|+.|+|.|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999984
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=3.7e-17 Score=180.42 Aligned_cols=241 Identities=18% Similarity=0.303 Sum_probs=195.0
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.++.+.+|..+|.|+.|...|.++++|++|..|+||..++..+.....+|...|++++.+.++..+++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE----c-cCCCCeEEEEEcCCCCEEEEEEC
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----H-GHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~----~-~h~~~I~si~fspdg~~Latgs~ 332 (713)
.++..+..+.+|++.|++|+|+|-. +.+.||++++||.+ ...+... + ..+..+.++.|..++..+++++.
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 9999999999999999999999854 77889999999998 1111111 0 12356777888888889999999
Q ss_pred CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
|+.-..|.+.... .+...+.-+.++.+...+.+++-.+-.+++|++.++. +.....+|...+..|.+++-.-.
T Consensus 337 d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred CcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcH
Confidence 9998888765321 1222223333333344677788888899999997665 45566789999999999998855
Q ss_pred E---EEeCCcEEEEecCCCCC
Q 005123 413 L---CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 413 l---aS~Dg~v~iWd~~~~~~ 430 (713)
+ ++.||.+.|||+-....
T Consensus 410 i~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred hhhhccCCCceEeeecccCCc
Confidence 5 45999999999854433
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=162.20 Aligned_cols=293 Identities=15% Similarity=0.164 Sum_probs=208.8
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
++..+.+..|.+.|++++|+.||.+|++|+..|.+.+|.+++++ ...+..-.+.|..+.+++|+++.++...|+.|.+.
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 44567788999999999999999999999999999999999988 55666678899999999999999999999999999
Q ss_pred EcCCCceeeeecc-----------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----------CCC
Q 005123 214 QNNMNNVKANKSA-----------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----------HGW 271 (713)
Q Consensus 214 dl~~~~~~~~~~~-----------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----------h~~ 271 (713)
...+.+....+.+ ..+-.+.+++++.-+.++-.+..++|.+||+-+.+.+..+.. +..
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v 399 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQV 399 (792)
T ss_pred eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEE
Confidence 8766554443322 233467788888778888899999999999977666554421 123
Q ss_pred ceEEEEEcCCCCEEEEEeC--------CC--cEEEEECCCCce----EEE-EccCCCCeEEEEEcC--CCCEEEEEECCC
Q 005123 272 DVKSVDWHPTKSLLVSGGK--------DS--LVKLWDAKSGRE----LCS-FHGHKNMVLCVKWNQ--NGNWVLTASKDQ 334 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~--------Dg--~I~IwDl~t~~~----~~~-~~~h~~~I~si~fsp--dg~~Latgs~Dg 334 (713)
.++.++.+..|.++++.-. || .+++|-...... ..+ ...|...+...++.. ....+++++.||
T Consensus 400 ~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 400 GITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred eeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 4677777778888887632 33 478886543322 222 235666666666654 233789999999
Q ss_pred eEEEEECCC----------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEE
Q 005123 335 IIKLYDIRA----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404 (713)
Q Consensus 335 ~I~IwDl~t----------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l 404 (713)
.++||-+.. +.+...-.-|...+++++|+. +|. +++++.|++|.|||..+...+..........+..+
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dGs-lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~ 557 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DGS-LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAEL 557 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CCc-EEEEecCCEEEEecCCChhhhhccccccccchHhH
Confidence 999998832 222222224788999999998 565 55566788999999987543333333223334334
Q ss_pred EEc----CCCcEEEEeCCcEEEEecCCCC
Q 005123 405 AWH----PIGYLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 405 ~~s----pdg~~laS~Dg~v~iWd~~~~~ 429 (713)
.+. .++.++......+.+|++-+..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~l~~WNll~~~ 586 (792)
T KOG1963|consen 558 LFTAQTQNDGALVHATQQRLSVWNLLSMS 586 (792)
T ss_pred hhhcccccccceeeccCceEehHhhhhhh
Confidence 333 3445555578888888875443
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.1e-15 Score=167.33 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=178.4
Q ss_pred CceEEEEEccC--CCEEEEEECCCcEEEEeCC-----CCceEEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQ-----SFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 145 ~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~-----t~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..|+.+.+-.+ ..+|++|+.||.|+||+-. +.+++....+ ..+.-.-++|.....+|+++++-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 46888888764 4689999999999999722 2233332221 11122346787777778877778999
Q ss_pred EEEEcCCCceeeeec-cCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCc--eEEEEEcCCCC
Q 005123 211 KYWQNNMNNVKANKS-AHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWD--VKSVDWHPTKS 283 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~-~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~--V~sl~~spdg~ 283 (713)
+|||.+...+...+. +....|++++-+- .|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 999999887766653 3445677776544 4689999999999999998653 245667778877 99999998665
Q ss_pred -EEEEEeCCCcEEEEECCCCceEE--EEccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----
Q 005123 284 -LLVSGGKDSLVKLWDAKSGRELC--SFHGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---- 353 (713)
Q Consensus 284 -~L~sgs~Dg~I~IwDl~t~~~~~--~~~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---- 353 (713)
.|++|+.||.|++||++...... ++..| .+..+++..+.+...||+|+. +.|+|||+. |+.+..++.+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 49999999999999999742222 22222 235999999999999999998 999999987 5555554433
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
...+.+++|+| ..-++|+|+.|.+|.||...+.
T Consensus 1348 ~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 24689999999 7889999999999999987543
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.3e-13 Score=150.09 Aligned_cols=286 Identities=11% Similarity=0.130 Sum_probs=186.1
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~ 225 (713)
-..++|++||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 3457899999999999999999999999999999988644 567899999999998775 67999999999998887764
Q ss_pred cC-------CCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEE-EEccCCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005123 226 AH-------KESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (713)
Q Consensus 226 ~~-------~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~-~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~ 295 (713)
.. ...+..|..++....++.+-. .+.|.+.|..+.+.+. .............|++++++++++ ..++.|.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 32 346788888888886666655 4889888987654332 222345567889999999987665 4567899
Q ss_pred EEECCCCceEEEEcc----CCCCeEEE-------EEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 296 LWDAKSGRELCSFHG----HKNMVLCV-------KWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 296 IwDl~t~~~~~~~~~----h~~~I~si-------~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++|.++++.+..+.. |...+..+ .|.. .+...++.-....+.+||..+++.+.++...... ..++.
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999887766532 22222221 2322 2333333333346778999999999999977666 88889
Q ss_pred eCCCCCEEEEE----ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE---eCCcEEEEecCCCCCcccc
Q 005123 363 HPFHEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS---NDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 363 sp~~~~~lasg----s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS---~Dg~v~iWd~~~~~~~~~~ 434 (713)
+| ++.++.+. ..++.|.++|.++.+....+.......+..+.|++||..+ .| .++.|.|||....+...+.
T Consensus 277 hP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 277 HP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99 67777766 5568999999987754444433333459999999999644 33 3447999998666555443
Q ss_pred c
Q 005123 435 K 435 (713)
Q Consensus 435 ~ 435 (713)
.
T Consensus 356 ~ 356 (369)
T PF02239_consen 356 P 356 (369)
T ss_dssp E
T ss_pred E
Confidence 3
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=153.37 Aligned_cols=287 Identities=15% Similarity=0.244 Sum_probs=206.7
Q ss_pred CCCCceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
+|...-+.|..++||+||+ +|.+.-.|++||+....+...-......|.-.-++.|-..++.-..|.+|.+-..-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4566778899999999865 777888999999987665544333344565555665656666666677776643221111
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
... ....-.+++++.-..-|++++....|+-++++.+..+..+......+++|..++...+|++|+.||.|.+||.+
T Consensus 129 ~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 12233456665544445566666689999999999999888888999999999999999999999999999999
Q ss_pred CCceEEEEccC-----------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCC-
Q 005123 301 SGRELCSFHGH-----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE- 367 (713)
Q Consensus 301 t~~~~~~~~~h-----------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~- 367 (713)
+...+.++... ...|+++.|+.+|-.+++|+.+|.|.|||+++.+.+..-. +..-.|..+.|.+.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 87766665421 1249999999999999999999999999999988775443 2235789999976433
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE-EeCCcEEEEecCCCCCcccc
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC-SNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la-S~Dg~v~iWd~~~~~~~~~~ 434 (713)
..|++ .+...++|||-.+++....+.. ...++++++-+++ .++. -.+..+..|-+..-+...+.
T Consensus 286 ~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 286 NKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred ceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 34444 4456899999988876655543 4559999998876 3333 37778888877776665543
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-14 Score=165.62 Aligned_cols=257 Identities=18% Similarity=0.266 Sum_probs=186.5
Q ss_pred CCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEE
Q 005123 175 SFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSC 246 (713)
Q Consensus 175 t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~ 246 (713)
+|..+..+..|+..|..++.+.+. .++++|+.||+|++||+..- +...++......+.++..+..++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 366788888899999999988766 89999999999999997632 2333444467789999999999999999
Q ss_pred ECCCeEEEEEcCCCe-------eEEEEcc--CCCceEEEEEcC-CCC-EEEEEeCCCcEEEEECCCCceEEEEc--cCCC
Q 005123 247 SDDTTVKVWDFARCQ-------EERSLTG--HGWDVKSVDWHP-TKS-LLVSGGKDSLVKLWDAKSGRELCSFH--GHKN 313 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~-------~~~~l~~--h~~~V~sl~~sp-dg~-~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~ 313 (713)
+.||.|++.+++..+ ..+.... ....|..-++.. +.. .|+.+...+.|..||+++.....+++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999987521 1111111 222233334433 233 78888899999999999876655443 3467
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCC--CEEEEEE--CCCcEEEEEcCCCC
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE--EYFVSGS--LDGSIFHWLVGHET 388 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~--~~lasgs--~DG~I~Iwd~~~~~ 388 (713)
.|++++.++.++|+++|+..|.+.+||+|-...+..+. .+...|..+..++... ...++++ ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 89999999999999999999999999999888887765 2446788888777544 5555544 46789999998886
Q ss_pred ceEEEecccC-------------------CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCc
Q 005123 389 PQVEIHNVHD-------------------NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 389 ~~~~~~~~h~-------------------~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
....+..... ..+.+..-..++.++.+ .|..||.||...+...
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 6555543311 12333333455555554 9999999998776654
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=154.49 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=163.9
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.+||....+. +.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ......+..++|++|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3689999876554 344556778999999999999886542 35799999988764432 233444567899999998
Q ss_pred EEEE-ECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 Las~-s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+.. +.++ .|++||+++++... +..+...+....|+||++.|+.++.+ + .|+++|+.+++.. .+......+.
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8865 4444 59999998876544 44445577899999999988877764 3 4555577766543 3333444567
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc---EEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS---IFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~---I~Iwd~~~~~~~ 390 (713)
+.+|++||++|+..+.+ ..|++||+.+++... +.. ........|+| ++++|+.++.++. +.+++++ +..
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~-G~~- 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD-GRF- 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC-CCC-
Confidence 78999999999876644 358899998876443 322 12345678999 7888888877764 6666763 332
Q ss_pred EEEecccCCCeEEEEEcCC
Q 005123 391 VEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd 409 (713)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 3334457788999999873
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=146.07 Aligned_cols=272 Identities=11% Similarity=0.278 Sum_probs=192.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccC
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 227 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~ 227 (713)
-++||++|++||+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999866 788889888766544443 45677889998887766 5577889999999999888888888
Q ss_pred CCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---------------
Q 005123 228 KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------- 291 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------------- 291 (713)
...+..++|+|||+.|+ +..-|-+|.||.+.+.+.... .-....+..++|++||++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999996655 555688999999988655433 2234456888999998887776541
Q ss_pred ---------------------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-
Q 005123 292 ---------------------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES- 349 (713)
Q Consensus 292 ---------------------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~- 349 (713)
..+.+||.--.-.+..++ ..-.+..++|+|.+++|++|+.|+.+||.+--+.+...+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 224444432111122222 234588899999999999999999998866433221110
Q ss_pred -----------------------------------------------------------ee------cCCCCeEEEEEeC
Q 005123 350 -----------------------------------------------------------FR------GHRKDVTALAWHP 364 (713)
Q Consensus 350 -----------------------------------------------------------~~------~h~~~V~sl~fsp 364 (713)
++ ...-.+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 0112367789999
Q ss_pred CCCCEEEEEECC--CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEEeCCcEEEEecCC
Q 005123 365 FHEEYFVSGSLD--GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 365 ~~~~~lasgs~D--G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS~Dg~v~iWd~~~ 427 (713)
|..+++|-.+. ..+.+||+...+....+. ....|....|+|.. .++|+....+.+|...-
T Consensus 329 -Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 329 -DSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -CceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 77888776543 469999997655333333 35689999999987 44566777889997654
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.1e-14 Score=157.09 Aligned_cols=220 Identities=11% Similarity=0.136 Sum_probs=159.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG--~I~v 212 (713)
.+..+...+.+.+|||||+.|+..+. +..|++||+.+++... +....+.+.+++|+|||+.|+.. +.+| .|.+
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 34456678999999999999987653 3579999998876433 33334455678999999988855 4455 4888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+++++.... ..+...+....|++|++.|+.++.+ + .|+++|+.+++. ..+......+.+..|++||++|+..+
T Consensus 272 ~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence 99988876544 3444567899999999998877764 3 455557766544 33343444567899999999998876
Q ss_pred CC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI---IKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~---I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.+ ..|.+||+.+++.. .+.. ........|++||++|++++.++. +.++++. ++....+..|.+.+...+|+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred ccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccC
Confidence 54 35889999887644 3332 223456889999999999887764 6777874 66667777788889999998
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=6.8e-14 Score=156.50 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=161.4
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|+|||.... ..+.+..+...+.+.+|++|++.|+..+.+ ..|.+||+.+++.... ........+++|++|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 36899998644 445566677889999999999999877643 4699999988765433 333445568899999998
Q ss_pred EE-EEECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSL--VKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~--I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++ .|++||+.+++. ..+..+......++|++|++.|++++. ++. |+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 76 445555 599999988764 344445555678999999998887764 444 7777877765433 222334455
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-C--cEEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-G--SIFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G--~I~Iwd~~~~~~~ 390 (713)
.++||+||++|+..+.++ .|++||+.+++.. .+. +........|++ ++++|+..+.+ + .|++++++. ..
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g--~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDG--RV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCC--Cc
Confidence 789999999998776443 6999999887654 333 223455779999 66666555543 3 477777643 23
Q ss_pred EEEecccCCCeEEEEEcC
Q 005123 391 VEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (713)
...+..+.+.+...+|++
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 344444566778888876
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.6e-14 Score=157.50 Aligned_cols=235 Identities=10% Similarity=0.083 Sum_probs=156.3
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.+||... .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ......+.+.+|++|++.
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 4677888743 4445566678889999999999999876643 3599999998875443 334456678999999998
Q ss_pred EE-EEECCCeEEEEE--cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDTTVKVWD--FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLW--DAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg~I~iwD--l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~I~Iw--Dl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++...||. +..+. ...+..+...+.+..|++||+.|+..+. ++...|| |+.+++... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 87 456777766665 44443 4455555555678899999998887664 4555555 545544322 222233445
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCc--EEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGS--IFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~--I~Iwd~~~~~~~ 390 (713)
..+||+||++|+..+.++ .|++||+.+++...... ........|++ +++.|+.++. .|. +++.++ ....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~--~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSS--DGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECC-CCCEEEEEEecCCCEEEEEEEC--CCCc
Confidence 689999999999877654 69999998876543322 23346789999 5665555554 444 444444 2333
Q ss_pred EEEecccCCCeEEEEEcCC
Q 005123 391 VEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd 409 (713)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 3444456677888888864
No 219
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=146.85 Aligned_cols=249 Identities=17% Similarity=0.190 Sum_probs=187.2
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC------ceeeee-ccCCCCeeEEEEecCCCEEEEEECCCeE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTV 252 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~------~~~~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I 252 (713)
+.+.+|.+.|.+|.|+.++++|++|+.|..++||+++.. +.+... ..|...|.||+|...+++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 446689999999999999999999999999999997632 333333 3456899999999999999999999999
Q ss_pred EEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCCeEEEEEcCC-CCE
Q 005123 253 KVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNW 326 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~I~si~fspd-g~~ 326 (713)
...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... .+............+.|+|. -.+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999888877652 23589999999999999999999999999998754 12223345566888999994 577
Q ss_pred EEEEECCCeEEEEECCCCee-EEE------eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-
Q 005123 327 VLTASKDQIIKLYDIRAMKE-LES------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD- 398 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~-l~~------~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~- 398 (713)
|++.+..+-+-|||++.... +.. +......-.++.|++ +++.|++.-....-.+||+-+....+... .|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~ 287 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNP 287 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEec-cCCC
Confidence 88899999999999985432 111 111122335778999 77777777666666778886544333222 222
Q ss_pred ------CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 399 ------NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 399 ------~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
..+.+++|..|..++.+ ++-.|.+|.+-+..+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence 35778889888876644 888999999865433
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=8e-14 Score=155.54 Aligned_cols=219 Identities=13% Similarity=0.127 Sum_probs=154.4
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl 215 (713)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|++||+.|+ +.+.+|...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 45677889999999999999987643 359999999886543 444456677899999999887 5677887777654
Q ss_pred --CCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEc--CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 216 --NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 216 --~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl--~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
.++. ...+..+...+....|++|++.|+..++ ++...||.+ .+++.. .+..........+|++||++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEc
Confidence 4444 3334445555677899999998886664 455566654 444332 22223334557899999999998776
Q ss_pred CC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++ .|.+||+.+++...... ......++|++||+.|+.++.++ .+.+.|+. ++....+..+.+.+...+|+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 54 59999998876543322 23456789999999998877544 46666774 555666666777788888887
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-13 Score=140.21 Aligned_cols=240 Identities=15% Similarity=0.284 Sum_probs=171.0
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC--
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-- 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~-- 218 (713)
.+..+..++|++.-..+|++..|..|+|||-+. ++...++ .....|+|++|-|.+ +.|++|+. +-|.||..+..
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 456789999999888899999999999999777 4444444 346789999999976 56777776 55899975422
Q ss_pred --ce----------eeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 219 --NV----------KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 219 --~~----------~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.. +....+| ..|+++.|.+|+..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1111223 68999999999999998875 6789999999988776665566789999999999999
Q ss_pred EEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------ee---EEE
Q 005123 286 VSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------KE---LES 349 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------------~~---l~~ 349 (713)
++++-|+..++|+.. +....+-.. ..+.|...+|+|+|++|+.++. +.-+||.+... +. +..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999999554 333333333 3458999999999998876543 23344443210 00 011
Q ss_pred e---------ecCCCCeEEEEEeCCCCCEEEEEECCC--------cEEEEEcCCCC
Q 005123 350 F---------RGHRKDVTALAWHPFHEEYFVSGSLDG--------SIFHWLVGHET 388 (713)
Q Consensus 350 ~---------~~h~~~V~sl~fsp~~~~~lasgs~DG--------~I~Iwd~~~~~ 388 (713)
+ +.-.+.+.+++|.| .+.+||+.-..+ .|.+||.+..-
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred chhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 1 01245688999999 788888776544 36677775443
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=160.01 Aligned_cols=217 Identities=17% Similarity=0.314 Sum_probs=164.4
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
....++.+|.+.|+|++|+.||.+|++|++|-.+.|||.-..+.+..+ .+|...|.+++|-| +++.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 356688999999999999999999999999999999998876665544 67999999999988 457789999999999
Q ss_pred EEEcCCC----------eeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE----------EEEccCC
Q 005123 254 VWDFARC----------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGREL----------CSFHGHK 312 (713)
Q Consensus 254 iwDl~~~----------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~----------~~~~~h~ 312 (713)
++|+.+. +....+..|...|..|+..+++ +.+.++++||+|+-||++..... ..+....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999742 2344556788999999999988 89999999999999999863211 1111222
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Ce----------eEEEee-cCC-----------CCeEEEE
Q 005123 313 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA--------MK----------ELESFR-GHR-----------KDVTALA 361 (713)
Q Consensus 313 ~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t--------~~----------~l~~~~-~h~-----------~~V~sl~ 361 (713)
-...|+.++| +..+|++|+.|-..++||.+. ++ ++..|. +|- ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3567899999 467889999999999999542 11 122221 121 1256788
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
|+|.+..+|++-+.+ .|+++|+..++......
T Consensus 281 fnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ECCCCcEEEEeeCCe-EEEEEeecCCCCceeec
Confidence 999555666666555 89999998776554443
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.2e-13 Score=152.46 Aligned_cols=234 Identities=11% Similarity=0.062 Sum_probs=162.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|++||.... ..+.+..+...+.+.+|++||+.|+..+. +..|.+||+.+++... +..+...+.+.+|++|++.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCE
Confidence 37889998554 44567778889999999999999887653 4689999998886543 3455667788999999988
Q ss_pred EE-EEECCCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++. |++||+++++. ..+..+.....+..|++|++.|+..+. ++ .|++||+.+++.. .+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 4455554 78889887654 445556666778999999998888774 33 5888898766543 3333455677
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-C-----CcEEEEEcCCC
Q 005123 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-D-----GSIFHWLVGHE 387 (713)
Q Consensus 317 si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-D-----G~I~Iwd~~~~ 387 (713)
...|++||++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+| +++.|+..+. . ..|+++|++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887654 3688899865543 3332 233567889999 5666655443 3 25777777544
Q ss_pred CceEEEecccCCCeEEEEEcCC
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spd 409 (713)
.. ..+. ..+.+...+|++-
T Consensus 415 ~~--~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 415 NE--REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ce--EEcc-CCCCccCcccCCC
Confidence 32 2222 2445677778763
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=4.7e-14 Score=142.88 Aligned_cols=242 Identities=19% Similarity=0.368 Sum_probs=174.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEccCC--CEEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVSG 204 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~------------~~V~sl~~spdg--~~L~sg 204 (713)
.+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....++.|+ ..|..|.|..++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999644322 233444443 468889998876 467778
Q ss_pred eCCCcEEEEEcCCCceee------------------------------------eeccCCCCeeEEEEecCCCEEEEEEC
Q 005123 205 DDGGAIKYWQNNMNNVKA------------------------------------NKSAHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~------------------------------------~~~~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
..|.+|++|.+....... .-..|..-|++|+++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999865432111 0135777899999999998888775
Q ss_pred CCeEEEEEcCCCee---EEEEcc-----CCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceE----EEE-------
Q 005123 249 DTTVKVWDFARCQE---ERSLTG-----HGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGREL----CSF------- 308 (713)
Q Consensus 249 Dg~I~iwDl~~~~~---~~~l~~-----h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~----~~~------- 308 (713)
|=.|.+|+++-... +..++. ...-|++..|+| ..++|+..+..|+|+|.|++..... +.+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 66899999864322 222332 234588999999 4578888899999999999853221 111
Q ss_pred -----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCC------------C---eEEEEEeCCCC
Q 005123 309 -----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRK------------D---VTALAWHPFHE 367 (713)
Q Consensus 309 -----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~------------~---V~sl~fsp~~~ 367 (713)
..--..|..+.|+.+|+|+++-+. -+|+|||+. ..+.+.++..|.. . -..++|+- ++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-ND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-Cc
Confidence 112346889999999999987543 589999994 5566666665532 1 34678887 77
Q ss_pred CEEEEEECCCcEEEEEcCCCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+++||+....+++|++..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 899999999999999965443
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.4e-14 Score=143.92 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=195.5
Q ss_pred CCCceEEEEEccCCC--EEEEEECCCcEEEEeCCCCceEEEE------eccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 143 H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t~~~~~~l------~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
....|+.++|..|++ .|+.++.|..+..++.....+...+ ......|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 456788888887764 3444446777777776665554433 3345666666654 45778888899999999
Q ss_pred cCCCce----eeeeccCCCCeeEEEEecCCCE-EEEEECC--CeEEEEEcCCCeeEEEEccC---------CCceEEEEE
Q 005123 215 NNMNNV----KANKSAHKESVRDLSFCRTDLK-FCSCSDD--TTVKVWDFARCQEERSLTGH---------GWDVKSVDW 278 (713)
Q Consensus 215 l~~~~~----~~~~~~~~~~V~~l~fs~dg~~-Las~s~D--g~I~iwDl~~~~~~~~l~~h---------~~~V~sl~~ 278 (713)
.+.+.. ...+ .....+..+.-++...+ +++|+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 884431 1112 22345555555554444 5558888 88999999988655443321 125778899
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCC
Q 005123 279 HPT--KSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHR 354 (713)
Q Consensus 279 spd--g~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~ 354 (713)
.+. ...|++++.-+.|++||.+.++ .+..|.-....|+++...+++++|++|...+.+..||++.++.+.. +.+..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 7899999999999999999754 6777877788999999999999999999999999999999998876 88899
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
+.|++|..++ ...+|++++-|..|+|+|+.+...+..++. ...+++|.+.++-
T Consensus 291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDDV 343 (412)
T ss_pred CCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecCCc
Confidence 9999999999 789999999999999999988555444443 4567777776543
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.3e-13 Score=154.28 Aligned_cols=220 Identities=14% Similarity=0.145 Sum_probs=158.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG--~I~v 212 (713)
.+..+...|.+.+|++||+.|++++.+ ..|++||+.+++.. .+....+...+++|++||+.|+ +.+.+| .|.+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 455677789999999999999988743 46999999887654 3344455566889999999776 445555 5999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+.+++... +..+.......+|++|+++|+.++. ++. |+++|+.+++... +.........++|++|+++|+..+
T Consensus 277 ~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEE
Confidence 9998887544 3444555678899999999887764 444 7777877665433 322334456789999999998876
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++ .|.+||+.+++.. .+. +........|++||++|+..+.+ ..|.++|+. +.....+..+.+.+...+|+
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccC
Confidence 543 5999999887654 333 22345678999999998877653 468888886 44555566566777888887
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
|
T Consensus 432 p 432 (433)
T PRK04922 432 P 432 (433)
T ss_pred C
Confidence 6
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.5e-13 Score=136.82 Aligned_cols=269 Identities=15% Similarity=0.296 Sum_probs=189.2
Q ss_pred CceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~ 222 (713)
+.|.-+.|..|..+++++ ..|+.|.+|++..-+....+......+.+++|||||+.|+ +...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 457778888888777755 6688999999999888888988899999999999996655 66778999999998877654
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECC------------------------------------CeEEEEEcCCCeeEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDD------------------------------------TTVKVWDFARCQEERSL 266 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~D------------------------------------g~I~iwDl~~~~~~~~l 266 (713)
. ...+..+..++|++|+++.+.++.. ..+.|||.--.-.+..+
T Consensus 129 ~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred e-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 3 3345566889999999887766431 23455553211111111
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--------------------------------------
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-------------------------------------- 308 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-------------------------------------- 308 (713)
...-.+..++|+|.+++|++|+.|+.++|.+--+.+...++
T Consensus 208 -e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 -ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred -eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 12356899999999999999999999888654332211100
Q ss_pred ----------------------c------cCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEeecCCCCeE
Q 005123 309 ----------------------H------GHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 309 ----------------------~------~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+ .....+.-++||+|..++++-.++ +.+.|||+++.+....+ .....|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 0 001235678999999988876543 57999999976644333 3567899
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--EEeCCc
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHT 419 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~ 419 (713)
...|+| ....|+.+.....+++|...- ...+... ...-.|.++.|+-+|..+ ++.|..
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg-~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSG-PRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCC-ceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999 666777777777899998744 3233332 234679999999888554 455543
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.8e-13 Score=150.60 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=158.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCc--EE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGA--IK 211 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~--I~ 211 (713)
+.+..|...|.+.+|++||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|++||+.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 346678889999999999999998764 468999999887653 4555667788999999999876 5555555 77
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
+||++++.... +..+.......+|++|++.|+..+. ++ .|++||+..++.. .+......+....|+||++.|+..
T Consensus 274 ~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 77888776544 4445556778999999999887764 33 6888898765543 343345567788999999999887
Q ss_pred eCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 289 GKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 289 s~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D------g~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
+.+ ..|.+||+.++.. ..+. ....+..+.|++||++|+..+.+ ..|+++|+..++. ..+. ....+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~ 427 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASD 427 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccC
Confidence 654 3588889865543 3333 23357788999999998876543 3688888876544 3444 3445677
Q ss_pred EEEeC
Q 005123 360 LAWHP 364 (713)
Q Consensus 360 l~fsp 364 (713)
.+|+|
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 78876
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=5.5e-14 Score=149.51 Aligned_cols=216 Identities=15% Similarity=0.253 Sum_probs=152.5
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----eeeeeccCCCCeeEEEE-----ecCCCEEEEEECCCeEEEEEcCC
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSAHKESVRDLSF-----CRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~----~~~~~~~~~~~V~~l~f-----s~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
++...++-.|++|+..- ...+.||+.+.+. .+....-.....+|-+| .+++--|+++-..|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44444455566665433 2457777766432 11111111222333333 34555688888899999998765
Q ss_pred CeeEEEEc----cCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------Cce--------------EE
Q 005123 260 CQEERSLT----GHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS--------------GRE--------------LC 306 (713)
Q Consensus 260 ~~~~~~l~----~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t--------------~~~--------------~~ 306 (713)
.+..+.+. -....|+||.|-+ +...++++-.+|.+++||..- +.. +.
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 33222221 1346899999998 455777788899999997631 111 11
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+....+.|+.++|++||++||+.+.||.+||||..+.+.+..++..-+...|++||| |+++|++|++|.-|.||.+..
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc
Confidence 1112245688999999999999999999999999999998888887888999999999 899999999999999999954
Q ss_pred CCceEEEecccCCCeEEEEEc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~s 407 (713)
.+++..-.+|...|+.++|+
T Consensus 364 -rRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 364 -RRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -ceEEEeccccccceeeEeec
Confidence 44666667899999999998
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.3e-12 Score=131.69 Aligned_cols=235 Identities=12% Similarity=0.164 Sum_probs=169.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC--CeeEEEEecCCCEEEE-EECC------CeEEEEEcC
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--SVRDLSFCRTDLKFCS-CSDD------TTVKVWDFA 258 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~--~V~~l~fs~dg~~Las-~s~D------g~I~iwDl~ 258 (713)
...+++|+.|...++++.++| .+||+.+--+.......+.+ .+..+-| ..++|+. |+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999888766 89998875433222222222 2222222 2344443 3332 479999977
Q ss_pred CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEccC--CCCeEEEEEcCCCCEEEE-EECCC
Q 005123 259 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGH--KNMVLCVKWNQNGNWVLT-ASKDQ 334 (713)
Q Consensus 259 ~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h--~~~I~si~fspdg~~Lat-gs~Dg 334 (713)
..+++.++. ....|.+|.+.++ .|++.- +++|+||... +-+.++.+... ...+.+++-+.+..+||. |..-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 777777776 6678999999854 566655 4789999887 45555555432 233555544445555664 45678
Q ss_pred eEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCCceEEEeccc-CCCeEEEEEcCCC
Q 005123 335 IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIG 410 (713)
Q Consensus 335 ~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg 410 (713)
.|.|-|+...+. ...+..|++.|.+++.+- .+.++||+|..|+ |+|||..+++.+.++..+- ...|.+|+|+++.
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 999999986655 477889999999999998 8999999999998 8999999999888877663 3579999999999
Q ss_pred cEEEE--eCCcEEEEecCCCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+||. +-|+|.||.+.....
T Consensus 239 s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCCC
Confidence 88863 789999999866543
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.4e-13 Score=135.61 Aligned_cols=228 Identities=16% Similarity=0.283 Sum_probs=162.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-- 262 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-- 262 (713)
+..+..++|++.-..++++..|-.|++||-.+.............|++++|-|.+ +.|++++.. -|.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4457788999877788899999999999988754444444566789999999865 557777755 599998642111
Q ss_pred ------------EEEEccCCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 263 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 263 ------------~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+....+| ..|+++.|.+||..+++++. |..|.|||.+++..+.......+.++-+.||||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1112233 67999999999999999875 567999999998877665445677999999999999999
Q ss_pred EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE---------EEe------
Q 005123 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV---------EIH------ 394 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~---------~~~------ 394 (713)
++-|+..++|.............-.+.|...+|+|.+..+|++++..-.|+-..+....... .+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999995543332223333445899999999666666666655555443332211110 000
Q ss_pred --cc----cCCCeEEEEEcCCCcEEEE
Q 005123 395 --NV----HDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 395 --~~----h~~~V~~l~~spdg~~laS 415 (713)
.. -.+.+.+++|++.|.++|.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEE
Confidence 00 1357889999999998876
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=2.6e-12 Score=142.96 Aligned_cols=233 Identities=13% Similarity=0.116 Sum_probs=155.8
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.++|....+ .+.+..+...+.+.+|++|+++|+.+..+ ..|++||+.+++.... ..+...+.+++|++|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 468888876444 44555667789999999999999877644 4799999998865443 334556777999999988
Q ss_pred EEEE-ECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 Las~-s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+.. +.++ .|++||+.++... .+..+........|++|++.|+.++.. + .|+++|+++++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4343 5899998876543 344444455678999999988776653 3 5888898876643 3443456678
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC---cEEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---SIFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---~I~Iwd~~~~~~~ 390 (713)
.+.|++++++|+.++.++ .|.+||+.++... .+... .......|++ +++.|+..+.++ .+++.+.+ +. .
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~~-g~-~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAP-NGRMILYATTRGGRGVLGLVSTD-GR-F 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECC-CCCEEEEEEeCCCcEEEEEEECC-Cc-e
Confidence 889999999999888776 7999999875543 23222 2345668999 566665555543 34444432 22 2
Q ss_pred EEEecccCCCeEEEEEc
Q 005123 391 VEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~s 407 (713)
...+....+.+..++|+
T Consensus 401 ~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 401 RARLPLGNGDVREPAWS 417 (417)
T ss_pred eeECCCCCCCcCCCCCC
Confidence 23333334556655553
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=1.4e-12 Score=130.13 Aligned_cols=259 Identities=14% Similarity=0.250 Sum_probs=184.1
Q ss_pred CCcEEEEeCCCCceEE---EEeccCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEEcCCCceeeeeccCC------CCe
Q 005123 165 SGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSH---NDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK------ESV 231 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~---~l~~h~~~V~sl~~sp---dg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~------~~V 231 (713)
.|.+.+|++.+.+... ......+.+..+.|.. ++. .|+.+..+|.|.++..........++... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678999987755433 2223456677788864 445 56677788999999876554444443321 124
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE--EEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEE
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-GRELCS 307 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~--~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-~~~~~~ 307 (713)
.++.|+..+..++++..+|.+.+.+........ ..+.|+..+...+|+. +.+++.+|++|+.+..||+|. ++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 577888889999999999999977765554444 7788999999999986 457899999999999999993 344433
Q ss_pred -EccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 308 -FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 308 -~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.+.|...|.+|.-++ ++.+|++|+.|-.|++||.|+ ++.+..-. -.+.|+.+.++|.....|+.++.-.-.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 456888899998887 678999999999999999995 55555443 34789999999965555555555556777777
Q ss_pred CCCCce----EEEecccCCCeEEEEEcCCCcEEEE---eCCcEE-EEe
Q 005123 385 GHETPQ----VEIHNVHDNTVWDLAWHPIGYLLCS---NDHTTK-FWC 424 (713)
Q Consensus 385 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~laS---~Dg~v~-iWd 424 (713)
+.+... ......|.+-+..-.|.....++++ .|+.++ +|-
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 554433 3455667777777788554445543 777755 774
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=5.1e-12 Score=141.35 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=155.1
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.|.++|.+..+ ...+..+...+.+.+|++||+.|+..+.+ ..|.+||+.+++.... ......+....|++|++.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 47788877554 34555677789999999999998866543 3688999988865443 3334456678999999988
Q ss_pred EE-EECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CS-CSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as-~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+. .+.++ .|++||+.+++.. .+..+........|++|++.|+..+. ++ .|+++|+.+++...... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 74 44444 6888899877543 34445556677899999998877664 33 58888888776433222 2233456
Q ss_pred EEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCc--EEEEEcCCCCceE
Q 005123 318 VKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWLVGHETPQV 391 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~--I~Iwd~~~~~~~~ 391 (713)
..|++||++|+..+.++ .|.+||+.+++...... ........|++ +++.|+..+ .++. |++++++.. ..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~--~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGR--VR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--ce
Confidence 78999999998776532 58899998876433222 22223568999 566655544 4443 566666332 22
Q ss_pred EEecccCCCeEEEEEcCC
Q 005123 392 EIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spd 409 (713)
..+..+.+.+...+|++-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 333344566777888763
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.6e-12 Score=134.07 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=167.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCC-EEEEEeCC--CcEEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDN-WMVSGDDG--GAIKYWQ 214 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~-~L~sgs~D--G~I~vwd 214 (713)
....+|..++.. ...|++|..+|.+.+|..+.+. ....+.. ...+..+.-++... ++++|+.. ..++|||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555554 3368899999999999987432 2222322 24555666665554 45568888 8899999
Q ss_pred cCCCceeeeeccC---------CCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCC
Q 005123 215 NNMNNVKANKSAH---------KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 215 l~~~~~~~~~~~~---------~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg 282 (713)
++..+.+..-+.. .-.++++.|.+. ...|++++.-+.|++||.+.+. .+..+...+..|+++...+++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 9988555443321 124678889887 7889999999999999998654 467777778899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
++|++|..-+.|..||+++++.+.. +.+..+.|++|..++...+|++++-|+.|||+|+.+.+.+.... -...+++|.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il 338 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFIL 338 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEE
Confidence 9999999999999999999998776 88899999999999999999999999999999999866554332 234566666
Q ss_pred EeC
Q 005123 362 WHP 364 (713)
Q Consensus 362 fsp 364 (713)
+.+
T Consensus 339 ~~~ 341 (412)
T KOG3881|consen 339 LRD 341 (412)
T ss_pred ecC
Confidence 654
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=139.72 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=181.8
Q ss_pred cCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 185 HDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
+....+.|..++||+||+ +|...-.|+|||+....+..........|.-..++.|-..++.-..|.+|-+..--.....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 566788999999999876 6667789999999887766554333445555555666666777777877766542211111
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+ ...-.+++++.-..-|++++....|+-+++..|+.+..+....+.+++|..++...+|++|+.+|.|.+||-++
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 111 12334566665334455555567799999999999999988889999999999989999999999999999998
Q ss_pred CeeEEEeec------CC-----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC--C
Q 005123 344 MKELESFRG------HR-----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--G 410 (713)
Q Consensus 344 ~~~l~~~~~------h~-----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g 410 (713)
...+.++.. |. ..|+++.|+. ++-.+++|+.+|.|.|||++.....+.......-.|..|.|... .
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 766655542 22 2499999997 68899999999999999999998887777667789999999776 4
Q ss_pred cEEEE-eCCcEEEEecCCCCCcc
Q 005123 411 YLLCS-NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 411 ~~laS-~Dg~v~iWd~~~~~~~~ 432 (713)
..++| +...++|||-.......
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred ceEEecchHHhhhcccccCCcee
Confidence 66666 77889999986655433
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=1.4e-10 Score=125.79 Aligned_cols=261 Identities=11% Similarity=0.147 Sum_probs=173.8
Q ss_pred CceEEEEEccCCCEEEEEEC----CCcEEEEeCCCC--ce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 005123 145 CSINRVLWTPTGRRLITGSQ----SGEFTLWNGQSF--NF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQN 215 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~----dg~V~Iwd~~t~--~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl 215 (713)
.....+++++++++|+++.+ ++.|..|++... ++ +............+++++++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999999877 468988887653 32 3333334556678999999999998874 899999999
Q ss_pred CCC-ceeeee--c-----------cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCe--eE--EEEc-cCCCceEE
Q 005123 216 NMN-NVKANK--S-----------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQ--EE--RSLT-GHGWDVKS 275 (713)
Q Consensus 216 ~~~-~~~~~~--~-----------~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~--~~--~~l~-~h~~~V~s 275 (713)
+.. .+.... . .......++.|++++++++++.. ...|++|++.... .. ..+. .....-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 874 332221 1 12345778999999999888754 4589999997654 21 2222 34567889
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECC--CCce--EEEEcc------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005123 276 VDWHPTKSLLVSGGK-DSLVKLWDAK--SGRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (713)
Q Consensus 276 l~~spdg~~L~sgs~-Dg~I~IwDl~--t~~~--~~~~~~------h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t 343 (713)
++|+++++++++..+ +++|.+|++. +++. +..+.. .......|++++||++|+++. .++.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999998876654 6779999888 4432 222221 122578899999999998876 466899999942
Q ss_pred --C--eeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEec--ccCCCeEEEEE
Q 005123 344 --M--KELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAW 406 (713)
Q Consensus 344 --~--~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~ 406 (713)
+ +.+..+.......+.+++++ ++++|+++. .++.|.+|+++.....+.... ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 34455554456689999999 566666555 677899998864443333322 23456667766
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.1e-11 Score=133.25 Aligned_cols=271 Identities=12% Similarity=0.202 Sum_probs=173.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-----eCC-----CcEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-----DDG-----GAIKYW 213 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-----s~D-----G~I~vw 213 (713)
...++..+++++|+++|.+. +..|+|++..+...+.+... ..+.++.|+|.+++|.+- ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477888999998777766 55899999888764444333 388999999999998762 122 347799
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEE------------------
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS------------------ 275 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~s------------------ 275 (713)
+++++.....+......-+++.|+.|+.+.+-- ..+.|.+||+.+.+.+... -|...|+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccC
Confidence 999854444443333333577787776543322 2345777776543221111 12223333
Q ss_pred ----------------------------------EEEcCCCC-EEEEEe--CC---------CcEEEEECCCCceEEEEc
Q 005123 276 ----------------------------------VDWHPTKS-LLVSGG--KD---------SLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 276 ----------------------------------l~~spdg~-~L~sgs--~D---------g~I~IwDl~t~~~~~~~~ 309 (713)
+.|+.-+. +|+.++ -| .+++++++....++..+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 34444333 222211 12 235555555323333332
Q ss_pred cCCCCeEEEEEcCCCCEEEE--EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEc
Q 005123 310 GHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLV 384 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Lat--gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~ 384 (713)
..+.|.++.|+++++-|++ |..-.++.|||++ ++.+..|. .+.-.++-|+| .+++|+.++.+ |.|.|||+
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEec
Confidence 4788999999999987764 5577789999998 66666553 56668899999 88988888764 78999999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEE--EE------eCCcEEEEecCC
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLL--CS------NDHTTKFWCRNR 427 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS------~Dg~v~iWd~~~ 427 (713)
.+.+ .+....+ ..-+-+.|+|||.++ |+ .|+.++||++..
T Consensus 344 ~n~K-~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 344 PNRK-LIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cchh-hcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8744 3333332 334567999999665 33 799999999854
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.1e-11 Score=138.92 Aligned_cols=235 Identities=14% Similarity=0.077 Sum_probs=152.0
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.|.++|....+. +.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++.... ..........+|++|++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778665443 455666778999999999998886643 33 588889888765332 2233445578999999987
Q ss_pred EE-EECCCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CS-CSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as-~s~Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+. .+.++. |++||+.+++. ..+..+...+...+|++|++.|+..+. ++ .|+++|+++++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 75 455664 88889887654 344445556778999999998877664 33 4777788877654332 22233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc--EEEEEcCCCCceEE
Q 005123 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVE 392 (713)
Q Consensus 318 i~fspdg~~Latgs~D-g--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~ 392 (713)
.+|++||++|+..+.+ + .|.++|+.+++... +... .......|++++..++++...++. |++++.+ +. ...
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~-~~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR-FKA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC-ceE
Confidence 7999999999876653 3 46678888776432 2222 122345799944444444545554 5666653 32 334
Q ss_pred EecccCCCeEEEEEcCC
Q 005123 393 IHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 393 ~~~~h~~~V~~l~~spd 409 (713)
.+..+.+.+...+|+|-
T Consensus 431 ~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 431 RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ECcCCCCCcCCCccCCC
Confidence 44445567788888863
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=3.3e-11 Score=131.23 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=173.6
Q ss_pred CEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 157 RRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 157 ~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
+++ ++-..++.|.|.|..+.+.+.++......-..++|++|++++++++.||.|.++|+.+.+.+.++.. .....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 344 4455689999999999999999987554445678999999999999999999999999999888765 44578899
Q ss_pred EecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceEE
Q 005123 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRELC 306 (713)
Q Consensus 236 fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~~~ 306 (713)
+++||+++++++ .++.|.++|.++.+.++.+.. ....+..|..++....+++.-.| +.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988765 689999999999988887753 23467888888888866665554 788888987755432
Q ss_pred -EEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeec----CCCCeEEEE-------EeCC-CCCEEEE
Q 005123 307 -SFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG----HRKDVTALA-------WHPF-HEEYFVS 372 (713)
Q Consensus 307 -~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~-------fsp~-~~~~las 372 (713)
+............|+++++|++++ ..+..|-++|.++++.+..+.. |...+..+- |... .+...++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 233345667889999999998765 4667899999999888766542 223333221 2110 1222222
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE------eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS------NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS------~Dg~v~iWd~~~~~ 429 (713)
.-....+.+||..+.+.+..+. ..... .-+..+|++.++.. .++.|.|+|.+..+
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred cccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 2223356667776555444443 33444 77889999977753 45899999987663
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=2.3e-10 Score=124.13 Aligned_cols=272 Identities=11% Similarity=0.136 Sum_probs=178.3
Q ss_pred EEEEECC----CcEEEEeC--CCCceEEEE-eccCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCC--c--eeee
Q 005123 159 LITGSQS----GEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD----GGAIKYWQNNMN--N--VKAN 223 (713)
Q Consensus 159 Latgs~d----g~V~Iwd~--~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~----DG~I~vwdl~~~--~--~~~~ 223 (713)
+++|+.+ +.|++|++ +++++...- .........+++++++++|+++.+ ++.|..|++... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566665 67888877 444443222 123456678899999999998877 478999988764 2 2333
Q ss_pred eccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCC-CeeEEE---Ec----------cCCCceEEEEEcCCCCEEEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFAR-CQEERS---LT----------GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~-~~~~~~---l~----------~h~~~V~sl~~spdg~~L~sg 288 (713)
..........+++++++++|+++.. +|+|.++++.. +..... +. .......++.|+|++++|++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334556678999999999998874 89999999976 333222 11 123457899999999988887
Q ss_pred eC-CCcEEEEECCCCc--eE--EEE-ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCe--eEEEeecC----
Q 005123 289 GK-DSLVKLWDAKSGR--EL--CSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR--AMK--ELESFRGH---- 353 (713)
Q Consensus 289 s~-Dg~I~IwDl~t~~--~~--~~~-~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~--t~~--~l~~~~~h---- 353 (713)
.. ...|++|+++... .. ..+ ......-..++|+++++++++.. .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 54 3469999987654 21 122 23455678999999999887665 56789999988 443 23333211
Q ss_pred --CCCeEEEEEeCCCCCEE-EEEECCCcEEEEEcCCCCceEE---EecccCCCeEEEEEcCCCcEEEE---eCCcEEEEe
Q 005123 354 --RKDVTALAWHPFHEEYF-VSGSLDGSIFHWLVGHETPQVE---IHNVHDNTVWDLAWHPIGYLLCS---NDHTTKFWC 424 (713)
Q Consensus 354 --~~~V~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~~laS---~Dg~v~iWd 424 (713)
......|++++ ++++| ++...++.|.+|+++.....+. ........-+.+++++++.+|.. .++.|.+|+
T Consensus 242 ~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578999999 55555 4555677899999954322222 22222345889999999977643 788999999
Q ss_pred cCCCCCc
Q 005123 425 RNRPGDT 431 (713)
Q Consensus 425 ~~~~~~~ 431 (713)
++.....
T Consensus 321 ~d~~tG~ 327 (345)
T PF10282_consen 321 IDPDTGK 327 (345)
T ss_dssp EETTTTE
T ss_pred EeCCCCc
Confidence 9754433
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.2e-12 Score=138.64 Aligned_cols=273 Identities=14% Similarity=0.219 Sum_probs=196.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
......|++|+.+..+||+|+.||.++|..+.+. ....++.+|+..|..+.|+.+...|-+++.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999999999999999999999976542 1234678999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-EEEccCCCceEEEEEcCCCCE
Q 005123 208 GAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-~~l~~h~~~V~sl~~spdg~~ 284 (713)
|.|.||-+-.+.-.... ...++.|.+++|+.||..|+....||.|.|=.++....- +.++ ..-...+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHH
Confidence 99999988776533222 345677999999999999999999999988776544321 1122 223457899999999
Q ss_pred EEEEeCCCcEEEEECCCCc-------e-EE---EEccCCCCeEEEEEc--------CCCCEEEEEECCCeEEEEECCCCe
Q 005123 285 LVSGGKDSLVKLWDAKSGR-------E-LC---SFHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~-------~-~~---~~~~h~~~I~si~fs--------pdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
++.+-.+|.+.+||....- + +. .+......|..+.|. ||.-.|+++..+|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 9999999999999975321 1 11 112223346677775 367789999999998887655443
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCC---------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS- 415 (713)
.-..+. ..-.|..+.|++ ++.+|++++.|. .|.+|.- -...+..+......|++++|-..|..++-
T Consensus 251 ~Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 251 EPVVVD-TGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CCeEEe-cccEeecceecC-CCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 333333 336788999999 899999888753 3444432 22344455556778999999887755543
Q ss_pred eCCcEE
Q 005123 416 NDHTTK 421 (713)
Q Consensus 416 ~Dg~v~ 421 (713)
.|+.|.
T Consensus 327 vdsfiy 332 (1189)
T KOG2041|consen 327 VDSFIY 332 (1189)
T ss_pred ecceEE
Confidence 444433
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=7.5e-12 Score=133.02 Aligned_cols=276 Identities=14% Similarity=0.186 Sum_probs=189.3
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-------------- 208 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-------------- 208 (713)
..-++..++|||.|++|++....+ |.+|+...+..+..+. ...|..+.|+|++++|.+-++..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 556789999999999999887765 9999988776544443 46799999999999999865443
Q ss_pred -cEEEEEcCCCceeeeeccCC---------------------------------------------CCeeEEEEecCC--
Q 005123 209 -AIKYWQNNMNNVKANKSAHK---------------------------------------------ESVRDLSFCRTD-- 240 (713)
Q Consensus 209 -~I~vwdl~~~~~~~~~~~~~---------------------------------------------~~V~~l~fs~dg-- 240 (713)
.+.|||+.++.++..+.... ..|...+|++.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 49999998887665543222 234444555532
Q ss_pred CEEEE-----EECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCce
Q 005123 241 LKFCS-----CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-----------KDSLVKLWDAKSGRE 304 (713)
Q Consensus 241 ~~Las-----~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-----------~Dg~I~IwDl~t~~~ 304 (713)
..||. ...++.++||.+..+..+....-....-..+.|...|++|++-. .+.+++|+++....
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~- 266 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS- 266 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-
Confidence 22222 23355667777665555444333333445678888888766532 13568888887433
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcE
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSI 379 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latg--s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I 379 (713)
+.......+.|...+|+|+++.+++. ..+..+.++|++.. ....+ ....-..+.|+| .+++++.++.| |.|
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF~nl~gni 342 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGFDNLQGNI 342 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecCCccccce
Confidence 33333568899999999988877754 47889999999954 33333 344456788999 78888887765 679
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE----E----eCCcEEEEecCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC----S----NDHTTKFWCRNRP 428 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la----S----~Dg~v~iWd~~~~ 428 (713)
.|||......++..+.+ ....-+.|++|+.++- | .|+.|+||++...
T Consensus 343 ~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 343 EIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 99998776666644443 2344568999996653 1 7899999998544
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=2.7e-12 Score=127.29 Aligned_cols=155 Identities=17% Similarity=0.368 Sum_probs=113.9
Q ss_pred EEEEEccCCCEEEEEeC----------CCcEEEEEcCCCc-eeeeec-cCCCCeeEEEEecCCCEEEEEE--CCCeEEEE
Q 005123 190 RSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNN-VKANKS-AHKESVRDLSFCRTDLKFCSCS--DDTTVKVW 255 (713)
Q Consensus 190 ~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~~-~~~~~~-~~~~~V~~l~fs~dg~~Las~s--~Dg~I~iw 255 (713)
..+.|+++|++|++-.. -+...||.++..+ ....+. ...+.|.+++|+|+++.|+++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987774332 1345566553322 222222 2345699999999999976654 56799999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
|++ .+.+..+. ...++.|.|+|+|++|++++.+ |.|.+||+++.+.+.+++ | ..++.++|+|||++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55555553 4678899999999999998754 569999999888887765 3 34789999999999998874
Q ss_pred ------CCeEEEEECCCCeeEEEe
Q 005123 333 ------DQIIKLYDIRAMKELESF 350 (713)
Q Consensus 333 ------Dg~I~IwDl~t~~~l~~~ 350 (713)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6789999985 6666544
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=8.4e-13 Score=150.51 Aligned_cols=267 Identities=16% Similarity=0.222 Sum_probs=187.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe------cc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------AH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~------~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+++..+-. ++|++|. .-.|.+||+.++..+..+. .| ++.+. -.+.+++++..-+.+.+-+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchhh
Confidence 444444443 5666554 3469999998876654432 23 01110 0234455555444443322211
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc----eEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----VKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~----V~sl~~spdg~~L~sgs~Dg~ 293 (713)
. .+....+.|....+..+++.++..+.++.+.+||.........+...+.. ..-+-++.+.-++++|+.-+.
T Consensus 81 ~----~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 Q----IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred h----hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1 11223345555666668888999999999999999877666555432221 222334556668999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|.+|+....+.-..+.+|.+.|.++.|+.||+++++.++|+++++|++.+.+.+. ..-+|...|..++|++ + .|++
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEE
Confidence 9999988544444688999999999999999999999999999999999988776 5667999999999987 4 9999
Q ss_pred EECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
++.|.+.++|+.+.. ..+.+..|. ..|+.++...+..++.+ .|+.+++|++...+
T Consensus 234 ~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999976433 333555554 57999999998866654 99999999986543
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.3e-12 Score=139.66 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=153.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG--~I~v 212 (713)
.+..+...+...+|+|||++|+..+.+ ..|++||+.+++... +....+.+.+.+|++||+.|+ +.+.+| .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 355677789999999999999877644 369999998876543 333445566789999999887 444555 5888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C--CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D--g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+++++... +..+........|++|++.|+..+. + ..|+++|+.+++..... ..........|++++++|+..+
T Consensus 272 ~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEE
Confidence 8998876544 3445555677899999998877664 3 36888888777643322 2223345678999999998877
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++ .|.+||+.+++... +.. ........|++||++|+..+.+ ..|+++++. +.....+..+.+.+...+|+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred ccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence 543 48889998876533 322 2233457899999999877654 357777875 44444555556677788887
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
+
T Consensus 427 ~ 427 (430)
T PRK00178 427 P 427 (430)
T ss_pred C
Confidence 6
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=6.9e-12 Score=139.58 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=152.7
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG--~I~v 212 (713)
.+..+...+.+.+|++||++|+.++.+ ..|++||+.+++... +..+...+.+++|++|++.|+. .+.++ .|.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 345566779999999999999987754 479999998876543 3445666778999999997764 44444 5888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+.++..... ..+........|++|+++|+.++.. + .|++||+.+++.. .+..+...+..+.|++++++|+.++
T Consensus 263 ~d~~~~~~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQLTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEE
Confidence 89887765433 3344445677899999988776653 3 6888888776543 3444556678899999999999988
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.++ .|.+||+.++... .+.. .......+|++|+++|+..+.++ .+++.+.. ++....+......+..++|
T Consensus 341 ~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 876 7999999875543 3322 22345678999999998877654 45565644 4445555544455555555
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=5.6e-12 Score=125.08 Aligned_cols=155 Identities=19% Similarity=0.336 Sum_probs=112.8
Q ss_pred EEEEEccCCCEEEEEEC----------CCcEEEEeCCC-CceEEEEec-cCCCEEEEEEccCCCEEEEE--eCCCcEEEE
Q 005123 148 NRVLWTPTGRRLITGSQ----------SGEFTLWNGQS-FNFEMILQA-HDHAIRSMVWSHNDNWMVSG--DDGGAIKYW 213 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~----------dg~V~Iwd~~t-~~~~~~l~~-h~~~V~sl~~spdg~~L~sg--s~DG~I~vw 213 (713)
..+.|+++|++|++-.. -+...||.++. ......+.. ..+.|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45779999988775433 13344554422 223334433 34579999999999987654 456899999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|++ .+.+..+ ....++.|.|+|+|++|++++. .|.|.+||+++.+.+.... | ..++.++|+|||++|++++.
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 4444444 3567889999999999999875 3679999999888877665 3 35789999999999999874
Q ss_pred ------CCcEEEEECCCCceEEEE
Q 005123 291 ------DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 291 ------Dg~I~IwDl~t~~~~~~~ 308 (713)
|+.++||+.. |+.+.+.
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6666543
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.2e-11 Score=134.38 Aligned_cols=238 Identities=14% Similarity=0.126 Sum_probs=151.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE---EEEeCCC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM---VSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L---~sgs~DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg 240 (713)
..|.+.|....+. +.+......+.+-+|+|||+.+ ++...+| .|.+.++.+++.... ..........+|++||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 3677788766544 3455556667788999999752 3455544 477778877764433 3344555678999999
Q ss_pred CEEEEEEC-CC----eEEEEEcCCC---eeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceEEEE
Q 005123 241 LKFCSCSD-DT----TVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW--DAKS-GRELCSF 308 (713)
Q Consensus 241 ~~Las~s~-Dg----~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~Iw--Dl~t-~~~~~~~ 308 (713)
+.|+..+. +| .+.+||+..+ +...............+|+|||+.|+..+ .++...|| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99887653 22 3444776642 22223322233456789999999888766 45654444 5542 3334445
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE-EEEC--CCcEEEE
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSL--DGSIFHW 382 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la-sgs~--DG~I~Iw 382 (713)
......+....|||||++|+..+.+ ..|++||+.+++...... ....+....|++ +++.|+ ++.. +..|++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 4455567889999999999877643 369999999887644332 344677899999 566555 4443 3468888
Q ss_pred EcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 383 LVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
|+..+.. ..+. ...+.+...+|++.
T Consensus 401 dl~~g~~-~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKT-RKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCE-EEee-cCCCcccCceecCC
Confidence 8865542 2232 23456777888864
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.4e-11 Score=138.10 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=148.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCCc--EEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGA--IKYW 213 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG~--I~vw 213 (713)
+..+...+.+.+|+|||++|+..+.+ ..|++||+.+++... +..........+|++||+.|+. .+.+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34455677899999999999876543 258899998876533 3333344557899999998874 566665 7777
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|+++++... +..+...+...+|++|++.|+..+. ++ .|+++|+.+++.... ..........+|++|+++|+..+.
T Consensus 292 dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEe
Confidence 888776544 3344556678899999998877654 33 577778877654432 222333456799999998888765
Q ss_pred C-C--cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 D-S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 D-g--~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-g--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
+ + .|.++|+.+++... +... .......|++||+.|+..+.+ + .|+++|++ ++....+..+.+.+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 46667888776433 3222 223356899999998876543 3 47778874 666666766667788888887
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2.2e-11 Score=131.92 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=157.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeecc---CCCCeeEEEEe--------------------cCCCEEEEEECCCeEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFC--------------------RTDLKFCSCSDDTTVK 253 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~---~~~~V~~l~fs--------------------~dg~~Las~s~Dg~I~ 253 (713)
...++|....||.++|||...++....+.. ..+..++..|. .+-..|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 457899999999999999998877665532 23445555552 2334577888899999
Q ss_pred EEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE
Q 005123 254 VWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 254 iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs 331 (713)
+|++..++....+. .|.+.|+++.++.+-..|.+++.|..+..|+..+.+.++.++.....+.++++++|++.|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999998887775 5889999999999889999999999999999999999999999999999999999999999886
Q ss_pred CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC-----CCCEEEEEECCCcEEEEEcCC
Q 005123 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~-----~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.|++||+++.+.+..|.+|.+.|+++.|.-. +..+|.+...+..|.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 57999999999999999999999999999773 244555666677788897754
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.5e-11 Score=134.06 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=147.2
Q ss_pred eCCCCCceEEEEEccCCCEEE---EEECC--CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CC----c
Q 005123 140 LNKNRCSINRVLWTPTGRRLI---TGSQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG----A 209 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~La---tgs~d--g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG----~ 209 (713)
|......+.+-+|+|||+.++ +...+ ..|++.++.+++.. .+....+.....+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 444556677889999997532 34334 35888898877644 33334556667899999998886553 23 3
Q ss_pred EEEEEcCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEE--EcCC-CeeEEEEccCCCceEEEEEcCCC
Q 005123 210 IKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVW--DFAR-CQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 210 I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iw--Dl~~-~~~~~~l~~h~~~V~sl~~spdg 282 (713)
+.+|++..+ +...........+...+|++||+.|+..+ .+|...|| ++.. +.....+......+.+..|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444676653 32333222233456789999999887765 45654455 4432 23344455455677889999999
Q ss_pred CEEEEEeCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeeEEEeecCCCC
Q 005123 283 SLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 283 ~~L~sgs~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
++|+..+.+ ..|.+||+.+++...... ....+....|++||++|+..+. +..|++||+.+++...... ....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCc
Confidence 998877653 369999999887654333 3446778999999998886543 3468999998776544443 4455
Q ss_pred eEEEEEeC
Q 005123 357 VTALAWHP 364 (713)
Q Consensus 357 V~sl~fsp 364 (713)
+...+|+|
T Consensus 417 ~~~p~Ws~ 424 (428)
T PRK01029 417 KRFPSWGA 424 (428)
T ss_pred ccCceecC
Confidence 67788887
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=5.8e-12 Score=127.94 Aligned_cols=240 Identities=15% Similarity=0.347 Sum_probs=170.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----eeeeeccC------------CCCeeEEEEecCCC--EEEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTDL--KFCSC 246 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----~~~~~~~~------------~~~V~~l~fs~dg~--~Las~ 246 (713)
.+-|.+|.|..+|++|++|+.+|.|.++.-+... ....+..| .+.|+.+.|..+++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644322 22222222 35688899988664 57788
Q ss_pred ECCCeEEEEEcCCCeeEE-----------------------------------E-EccCCCceEEEEEcCCCCEEEEEeC
Q 005123 247 SDDTTVKVWDFARCQEER-----------------------------------S-LTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~~~~-----------------------------------~-l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+.|.+|++|.+....... . -.+|..-|++|+++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999874321110 0 024777799999999999888775
Q ss_pred CCcEEEEECCCCc-e--EEEEccC-----CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeE----EEe-------
Q 005123 291 DSLVKLWDAKSGR-E--LCSFHGH-----KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL----ESF------- 350 (713)
Q Consensus 291 Dg~I~IwDl~t~~-~--~~~~~~h-----~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l----~~~------- 350 (713)
|=.|.+|+++--. . +..++.+ ..-|++..|+| ..++|+..++.|+|+|.|+|..... +.|
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999986422 2 2222322 24588999999 4678889999999999999843221 111
Q ss_pred -----ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC------------CCe---EEEEEcCCC
Q 005123 351 -----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD------------NTV---WDLAWHPIG 410 (713)
Q Consensus 351 -----~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~------------~~V---~~l~~spdg 410 (713)
..--..|..+.|+. +++++++-+.- +|++||++.....+.....|. +.| ..++|+.++
T Consensus 264 ~rsffseiIsSISDvKFs~-sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSH-SGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEcc-CCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11224688999998 88999887654 899999987777666665554 222 468899998
Q ss_pred cEEEE--eCCcEEEEecCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~ 428 (713)
.++.+ ..+.+++|+..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 66654 8899999995443
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=8.5e-11 Score=129.15 Aligned_cols=254 Identities=13% Similarity=0.058 Sum_probs=170.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe--
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS-MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV-- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~s-l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V-- 231 (713)
++..+++++.++.|+.+|..+++.+-...... .+.+ ... .++.+++++.+|.|..||.++++.+.........+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 46788889999999999999998876655332 2222 222 35677778889999999999998877654433211
Q ss_pred ---eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC----c------e-EEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 232 ---RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW----D------V-KSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 232 ---~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~----~------V-~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+..+ .+..++.++.++.|..+|.++++.+........ . + .+..+ .+..+++++.++.++.|
T Consensus 181 ~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 181 RGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred cCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEE
Confidence 11122 234677888899999999999877654321100 0 1 11112 25678888889999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~D 376 (713)
|.++++.+..... ........ ++..|++++.||.|..+|..+++.+....... ..+.+... .+..|++++.+
T Consensus 257 d~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCC
Confidence 9999988776552 11222222 56788888899999999999998887663222 22233333 34678889999
Q ss_pred CcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEEEeCCcEEEE
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSNDHTTKFW 423 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~laS~Dg~v~iW 423 (713)
|.|++||.++++...+.. .+.. ...+.++..+..++++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLK-TDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEE-cCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 999999998876554443 3333 344455666777778899999876
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=1e-10 Score=128.57 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=173.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
++.|++++.++.|+.+|..+++.+-.............. ++..+++++.+|.|..+|.++++++....... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 668889999999999999999887666544432223333 56788888999999999999998877654332 222211
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
.. .+..++.++.++.|+.||.++++.+..+......+ .+..+. +..++++..++.|..+|.++++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998877765432211 111222 34778888899999999999987755431
Q ss_pred CCC----C------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 311 HKN----M------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 311 h~~----~------I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
... . + .+..+ .+..+++++.++.++.||.++++.+...... ....... .+..|++++.||.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeE
Confidence 100 0 0 11112 3567888889999999999999887766521 1222332 34567777899999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCccc
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~~ 433 (713)
+.+|..+++.+.+........+.+.....+..++.+.||.|.+||.+..+...+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 999998776544332211222333334444344456899999998766544433
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.9e-11 Score=130.05 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=157.7
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEec---cCCCEEEEEEc------c--------------CCCEEEEEeCCCcE
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWS------H--------------NDNWMVSGDDGGAI 210 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~---h~~~V~sl~~s------p--------------dg~~L~sgs~DG~I 210 (713)
+-..++|....||.++|||..+.+....+.. -++..++..|. + |...|+.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3457899999999999999998877666542 23444555552 1 33567888899999
Q ss_pred EEEEcCCCceeeeec--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 211 KYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+...+..++...+....+.++++++|++.|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887775 688999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-----CCEEEEE-ECCCeEEEEECCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GNWVLTA-SKDQIIKLYDIRA 343 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-----g~~Latg-s~Dg~I~IwDl~t 343 (713)
+ +.|++||+++++.+.+|.+|.+.|+++.|-.+ |++|+++ ..+..|.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 78999999999999999999999999999876 6777654 4556677776654
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=5.6e-12 Score=143.89 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=160.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC----eeEEEEecCCCEEEEEECCCeEEEEEcCCCee
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES----VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~----V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~ 262 (713)
+.|....+..+.+.++.++.+..+.+||...+.+...+...... ..-+.++.+.-++++++.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44445666667889999999999999999887766655332221 22233456777899999999999999874333
Q ss_pred EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 263 ~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
-..+.+|++.|.++.|+-||.++++.|+|.++++|++++.+... ..-+|...|..++|.++ +|++++.|-++++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 34688999999999999999999999999999999999988766 56679999999999988 8999999999999976
Q ss_pred CCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 342 RAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 342 ~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ++.+.+++.|. +.|..++... +.-.++|++.|+.+++||+..
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 6 66677888886 5699999988 788999999999999999843
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=1.5e-11 Score=125.12 Aligned_cols=246 Identities=16% Similarity=0.287 Sum_probs=183.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEe-CCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd-~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...++||.+.|++...-+...-+++.+.|.+++||- .+.++.-..+. .-...++++.+..+...|++|-++|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 456789999999999999888899999999999995 33343333332 2357899999999999999999999998886
Q ss_pred cC----CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 215 NN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~----~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+. .....+....|...|..+.|+.....+++++.|..+.---.+.+..+..+. .....+++.+.-. +..+|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEeccc
Confidence 54 334556667899999999999999999999998766544444443332221 0111112222111 4555666
Q ss_pred CCcEEEEEC--CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCC
Q 005123 291 DSLVKLWDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 291 Dg~I~IwDl--~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~ 367 (713)
.|.|.+..+ ..-..+.++.+|.+.+++++|.+....|++|.+|..|.+||+--.+- ..++.+|...|..+.... .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 666655543 34567888999999999999999999999999999999999975443 466778999999888776 67
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
..+++++.||.|.+|+.+.
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8899999999999999853
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.9e-12 Score=134.35 Aligned_cols=253 Identities=19% Similarity=0.248 Sum_probs=183.8
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
.+...|..|.+.|..|.|...|..|++++.|..|.+||+.....+..+ .+|...|....|.| +...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345678889999999999999999999999999999999888765544 56888887777876 446799999999999
Q ss_pred EEEcCC-Cee--EEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEE---ccCCC---CeEEEEEcCC
Q 005123 254 VWDFAR-CQE--ERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKN---MVLCVKWNQN 323 (713)
Q Consensus 254 iwDl~~-~~~--~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~---~I~si~fspd 323 (713)
+=.+.. +.. ...+..|.+.|..++..|+ -+.|.+++.|+.+.-+|++.+....++ +.+.. ....|+..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 987643 222 3455678999999999985 457899999999999999986643333 22223 4678888885
Q ss_pred C-CEEEEEECCCeEEEEECCCCee------EEEeec------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-
Q 005123 324 G-NWVLTASKDQIIKLYDIRAMKE------LESFRG------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP- 389 (713)
Q Consensus 324 g-~~Latgs~Dg~I~IwDl~t~~~------l~~~~~------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~- 389 (713)
. ..+++++.|-.++|||.+.... +..|.. ....|++++|+.+.+.+|++ -.|-.|++|.-..+..
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCC
Confidence 4 5889999999999999875322 233322 22469999999745555555 4566888885533221
Q ss_pred -----------eEEEecccCC--CeEEEEEc-CCCcEEEE--eCCcEEEEecCCCCC
Q 005123 390 -----------QVEIHNVHDN--TVWDLAWH-PIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 390 -----------~~~~~~~h~~--~V~~l~~s-pdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
...++++|.+ .|..+.|- |...+++| +-|.|.||+.+....
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 1223566653 57777765 55566655 779999999765443
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=1.1e-09 Score=117.03 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=166.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC----------CCcEEEEEcCCCceeeeeccC-------C
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNNVKANKSAH-------K 228 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~~~~~~~~~~-------~ 228 (713)
+.|.|.|..+.+.+..+......- .+ +++|++.|+++.. +..|.|||+.+.+.+..+..- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999988887654443 34 9999998887655 789999999999988877542 2
Q ss_pred CCeeEEEEecCCCEEEEEE-C-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceE
Q 005123 229 ESVRDLSFCRTDLKFCSCS-D-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GREL 305 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s-~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~ 305 (713)
..-..+++++||++|++.. + +..|.++|+.+++.+..+..-. ...-+..+.+..+ +-+.||......+.+ ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2345789999999999776 3 6899999999999988876422 2222223222222 223445544433322 2211
Q ss_pred -EE---EccCCCCe-EEEEEcC-CCCEEEEEECCCeEEEEECCC-----CeeEEEeec-------CCCCeEEEEEeCCCC
Q 005123 306 -CS---FHGHKNMV-LCVKWNQ-NGNWVLTASKDQIIKLYDIRA-----MKELESFRG-------HRKDVTALAWHPFHE 367 (713)
Q Consensus 306 -~~---~~~h~~~I-~si~fsp-dg~~Latgs~Dg~I~IwDl~t-----~~~l~~~~~-------h~~~V~sl~fsp~~~ 367 (713)
.. +...+..+ ..-.|++ +|+++++..+ |+|.+.|+.. .+.+..+.. ....+.-++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 1114455 8888877776 9999999643 222322211 112344599999555
Q ss_pred CEEEEEE---------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE---eCCcEEEEecCCCCCc
Q 005123 368 EYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS---NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 368 ~~lasgs---------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS---~Dg~v~iWd~~~~~~~ 431 (713)
++++... ..+.|.++|..+.+....+.. ...++.|++++|+. +|.. .++.|.|+|....+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 5554331 124799999988877666665 45799999999998 5543 5788999997555443
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.1e-10 Score=122.99 Aligned_cols=277 Identities=18% Similarity=0.333 Sum_probs=194.5
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-----------CCCcEEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-----------DGGAIKYWQ 214 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-----------~DG~I~vwd 214 (713)
.=+-+.|||.|.+|+|-..-| |.+|-.++...++.+. .-.|.-+.|||+.+||++-+ ....|+|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 456789999999999998877 8999988776666654 34688999999999999854 225799999
Q ss_pred cCCCceeeeeccCCC--C-eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 215 NNMNNVKANKSAHKE--S-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 215 l~~~~~~~~~~~~~~--~-V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+.+|.+.+.+....+ . -.-+.||.|++++|.-..| +|.||+..+...+..-...-..|....|+|.+++||.=+..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 999998887765322 2 2356899999999887764 79999987644433323344678999999999888865432
Q ss_pred -----CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-------C---CeEEEEECCCCeeEEEeecCCCC
Q 005123 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-------D---QIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 292 -----g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-------D---g~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
..+.|-.+-+++.+++.+.++-.-..+.|-.+|.+|++--. . ..+.|+.++....-...-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 34778888888888777666655566788889999886321 1 13556666544332222234567
Q ss_pred eEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEE-----EeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLC-----SNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~la-----S~Dg~v~iWd~~~ 427 (713)
|...+|-| .++.+++.+. ..+|.+|.+++......+ ........+.|.|+|.|.+++ |..|.+.++|.+.
T Consensus 448 vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 448 VIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 89999999 5555554433 346889988743222221 112235678899999997664 2689999999875
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.35 E-value=1.3e-09 Score=131.10 Aligned_cols=284 Identities=13% Similarity=0.198 Sum_probs=195.1
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEE----eCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iw----d~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~- 216 (713)
...+.|.++.|-.|...|+++..+|.|.++ |..+.. +.....-+..|.+++||||+..|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544433 33344457899999999999999999988888775311
Q ss_pred ---------C-------------Cceeeeecc------------------------CCCCeeEEEEecCCCEEEEEEC--
Q 005123 217 ---------M-------------NNVKANKSA------------------------HKESVRDLSFCRTDLKFCSCSD-- 248 (713)
Q Consensus 217 ---------~-------------~~~~~~~~~------------------------~~~~V~~l~fs~dg~~Las~s~-- 248 (713)
. |+....+.+ ....-..|+|-.||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000000000 2234567889999999998875
Q ss_pred ----CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEc----cCCCCeEE
Q 005123 249 ----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSFH----GHKNMVLC 317 (713)
Q Consensus 249 ----Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~~~~~~----~h~~~I~s 317 (713)
-+.||||+-+ ++...+...-.+--.+++|-|.|++||+.-. .-.|.+|. ++|-....|. .....|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 2579999954 5544443333344568899999999998765 34477776 4454444443 34567999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--eEEEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEc----CCC---
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV----GHE--- 387 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~----~~~--- 387 (713)
+.|+.|+..||+...|. |.+|-..+.. ...++... ...+..+.|++.+...|...+.+|.+.++++ ...
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 9999988754 23344322 2345569999977778888888777765544 211
Q ss_pred ----CceEEEec-----------------------ccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCC
Q 005123 388 ----TPQVEIHN-----------------------VHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 388 ----~~~~~~~~-----------------------~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~ 429 (713)
...+.+.. .-...|.+++|++++..+ ...|+.|.+|..+...
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 01111111 124679999999998433 4599999999976544
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=1.6e-10 Score=115.56 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=169.2
Q ss_pred CCCceEEEEEcc---CCC-EEEEEECCCcEEEEeCCCCceEEEEeccC------CCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 143 NRCSINRVLWTP---TGR-RLITGSQSGEFTLWNGQSFNFEMILQAHD------HAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 143 H~~~V~~v~~sp---dg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~------~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..+.+..+.|.- +|. .|+-+..+|.|.+|..........+.+-+ ....++.|+..+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344566666653 444 56677788999999766544433333221 12457889998999999999999997
Q ss_pred EEcCCCceee--eeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCC-CeeEEE-EccCCCceEEEEEcC-CCCEEE
Q 005123 213 WQNNMNNVKA--NKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-CQEERS-LTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 213 wdl~~~~~~~--~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~-~~~~~~-l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
-+.....+.. +.+.|.-.++..+|+... +.+++|++|+.+..||++. ++.+.. .+.|...|.+|.-++ ...+|+
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 6666555444 778899999999998644 6789999999999999983 333332 456888999999887 577999
Q ss_pred EEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--e---eEEEeecCCCCeEE
Q 005123 287 SGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--K---ELESFRGHRKDVTA 359 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~--~---~l~~~~~h~~~V~s 359 (713)
+|+.|-.|++||.|+ ++.+..-. ..+.|+.++++|.- ..|+.++.-+-.+|.+.... + .+..++.|.+-+..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG 306 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYG 306 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeec
Confidence 999999999999996 55555443 45789999999842 23334444444777776543 2 34555677777777
Q ss_pred EEEeCCCCCEEEEEEC-CCcEE-EEEcCC
Q 005123 360 LAWHPFHEEYFVSGSL-DGSIF-HWLVGH 386 (713)
Q Consensus 360 l~fsp~~~~~lasgs~-DG~I~-Iwd~~~ 386 (713)
-.|.. ...+|+|++. |+.|+ +|-.-+
T Consensus 307 ~DWd~-~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 307 GDWDS-KDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccccc-ccceeeeeeccccceeeeeeecc
Confidence 77855 4567888663 55544 665433
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1e-11 Score=147.14 Aligned_cols=203 Identities=19% Similarity=0.332 Sum_probs=166.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
....++.+-..|.++.=+|..-+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.
T Consensus 2200 ~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2200 ASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 344566777889999999999999999999999999988877776664 3358899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEE---CCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+. .+.....+.|+....++.|.. ..+++++ +++.+.+||..... .-..-+.|...++++++.|...+|++|++
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 87 555566678899999999865 5666653 57899999974321 11222789999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
+|.|++||++..+.++.+.. +. ...+|++++..|.|+||++.....++++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999998887776663 44 56789999999999999999877666664
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8e-10 Score=118.57 Aligned_cols=276 Identities=14% Similarity=0.260 Sum_probs=193.1
Q ss_pred ceEEEEEccCCCEEEEEEC-----------CCcEEEEeCCCCceEEEEeccC--CCE-EEEEEccCCCEEEEEeCCCcEE
Q 005123 146 SINRVLWTPTGRRLITGSQ-----------SGEFTLWNGQSFNFEMILQAHD--HAI-RSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~-----------dg~V~Iwd~~t~~~~~~l~~h~--~~V-~sl~~spdg~~L~sgs~DG~I~ 211 (713)
.|.-+.|||+.++|+|-+. ...|+|||+.+|.+.+.+.... ..+ --+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4889999999999998753 2569999999999888877632 223 24689999999986655 6799
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
||+..+..++......-..|..+.|+|.++.||.-+.. .++.+-.+-+.+.+++.+.+.-.-..+.|-.+|++|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 99887766555545556789999999999988865432 3577778877777777665554555677777888877
Q ss_pred EEe----------CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC-C---eeEEE
Q 005123 287 SGG----------KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRA-M---KELES 349 (713)
Q Consensus 287 sgs----------~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t-~---~~l~~ 349 (713)
+-- .-.++.|+.++..............|...+|-|.|+.+++-+. ..++.+|.+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 532 1234667777665443333335677899999999988886543 34788888873 2 22333
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--------eCC
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--------NDH 418 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs---~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--------~Dg 418 (713)
+. ....+.+.|+| .+++++.+. ..|.+.++|+........-...| ...+.+.|+|.|+++++ .|.
T Consensus 490 ~d--k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 LD--KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hc--ccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 33 25578899999 777776654 46889999986522222222222 45678999999988853 567
Q ss_pred cEEEEecC
Q 005123 419 TTKFWCRN 426 (713)
Q Consensus 419 ~v~iWd~~ 426 (713)
-.+||++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 77888763
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=1.2e-10 Score=118.67 Aligned_cols=251 Identities=15% Similarity=0.282 Sum_probs=189.6
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeee-ccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~~~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
.+...+++|.+.|++...-+...-+++.+.|.+++||--. .++....+ ......++++.+..+...|+++-++|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 3456778888999998888888999999999999999533 34333322 234568899999999999999999999998
Q ss_pred EEcC----CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE
Q 005123 255 WDFA----RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 255 wDl~----~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg 330 (713)
+.+. +....+....|...|..+.|+-...++++.+.|..+.---.+++..+..+. .....+++.+.-. +.++|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEec
Confidence 8663 444556667799999999999989999999999877655555555443222 1111122222111 55666
Q ss_pred ECCCeEEEEEC--CCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 331 SKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 331 s~Dg~I~IwDl--~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
...|.|.+..+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.........+|.+.|..+....
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 66776666554 34567888999999999999999 8899999999999999999877777778888999999988877
Q ss_pred CCcEEE--EeCCcEEEEecCCCCCc
Q 005123 409 IGYLLC--SNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 409 dg~~la--S~Dg~v~iWd~~~~~~~ 431 (713)
.-..+. ..|+.|.+|+.+.....
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeec
Confidence 665553 49999999999866543
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.9e-10 Score=124.58 Aligned_cols=247 Identities=13% Similarity=0.222 Sum_probs=179.5
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--eccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
......+|.+|+.+|..+.|+.+...|-|...+|.|.||-+-++...... ...++.|.+++|..||..|+..-.||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 34456889999999999999999999999999999999987776543322 3346779999999999999999999999
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-------eeEEE----EccCCCceEEEEEc
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-------QEERS----LTGHGWDVKSVDWH 279 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-------~~~~~----l~~h~~~V~sl~~s 279 (713)
.|=.++.+++... .....-...+.|++|.+.++.+-.+|.+.++|.... .+... +......|..+.|.
T Consensus 140 IVGsvdGNRIwgK-eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGK-ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEEeeccceecch-hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 9988776554322 222334457889999999888888999999997432 11111 12223347777775
Q ss_pred --------CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---------eEEEEECC
Q 005123 280 --------PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------IIKLYDIR 342 (713)
Q Consensus 280 --------pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---------~I~IwDl~ 342 (713)
||.-.|+++..+|.+.|-.-.+......+. ..-.|..+.|+++|..|++++.|. .|.+|.-
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-
Confidence 366789999999999887655544333333 336789999999999999987543 4555554
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
-|+.+.+++.....|++++|-. .+-.++. ..|+.|++=++
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanI 336 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANI 336 (1189)
T ss_pred chhheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEee
Confidence 3788888998899999999965 3333333 33555555444
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.9e-08 Score=104.15 Aligned_cols=267 Identities=12% Similarity=0.147 Sum_probs=181.7
Q ss_pred CCcEEEEeCCCCc--e-EEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCC--Cceee--eeccCCCCeeEE
Q 005123 165 SGEFTLWNGQSFN--F-EMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNM--NNVKA--NKSAHKESVRDL 234 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~-~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~--~~~~~--~~~~~~~~V~~l 234 (713)
+.-|++|++.+.. + ...+-.+.+.++-|+|+++.++|+++..+ |.|..|.++. +++.. ........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987422 1 12233457788999999999999988654 7788877765 43322 222233444889
Q ss_pred EEecCCCEEEEEEC-CCeEEEEEcCC-CeeEE--EEccCCCc----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005123 235 SFCRTDLKFCSCSD-DTTVKVWDFAR-CQEER--SLTGHGWD----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (713)
Q Consensus 235 ~fs~dg~~Las~s~-Dg~I~iwDl~~-~~~~~--~l~~h~~~----------V~sl~~spdg~~L~sgs~-Dg~I~IwDl 299 (713)
++++++++++++.. .|.|.++-+.. +.... .+..|.+. +.+..++|++++|++.+. --+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888765 57899998855 32211 12234444 888999999999988864 235999999
Q ss_pred CCCceEEEEc---cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eeEEEeec---------CCCCeEEEEEeCC
Q 005123 300 KSGRELCSFH---GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-KELESFRG---------HRKDVTALAWHPF 365 (713)
Q Consensus 300 ~t~~~~~~~~---~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~-~~l~~~~~---------h~~~V~sl~fsp~ 365 (713)
..++...... .....-..|.|+|++++.++.+ -+++|.+|+.+.. ..+..+.. -..+..+|..++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 9776533211 2345678899999999988665 5889999998863 22333221 124577888999
Q ss_pred CCCEEEEEEC-CCcEEEEEcCCCCceEEEec---ccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCCCcc
Q 005123 366 HEEYFVSGSL-DGSIFHWLVGHETPQVEIHN---VHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 366 ~~~~lasgs~-DG~I~Iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~~~~ 432 (713)
++++|.++.. ...|.+|.+......+.+.. .+...-.++.+++++.+|. + .+..|.+|.++.....+
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 7787776654 34788998876655444432 2334467899999997664 3 67779999987665544
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=1.1e-08 Score=109.41 Aligned_cols=236 Identities=8% Similarity=0.025 Sum_probs=153.5
Q ss_pred EccCCCEEEEEEC----------CCcEEEEeCCCCceEEEEeccCC-------CEEEEEEccCCCEEEEEe-C-CCcEEE
Q 005123 152 WTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-D-GGAIKY 212 (713)
Q Consensus 152 ~spdg~~Latgs~----------dg~V~Iwd~~t~~~~~~l~~h~~-------~V~sl~~spdg~~L~sgs-~-DG~I~v 212 (713)
+|+|++.|+++.. +..|.|||..+.+.+..+..-.+ ....+++++||++|++.. . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 78899999999999988875322 334789999999999776 3 689999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-Cee-EE---EEccCCCceE-EEEEcC-CCCEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQE-ER---SLTGHGWDVK-SVDWHP-TKSLL 285 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~-~~---~l~~h~~~V~-sl~~sp-dg~~L 285 (713)
+|+.+++.+..+..-. ...-+..+ +...+ +-+.||......+.+ ++. .. .+......+. .-.|.+ +++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888775422 22222222 22222 223344444433322 111 11 1111000000 003344 78777
Q ss_pred EEEeCCCcEEEEECCCCc-----eEEEEcc-------CCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCC
Q 005123 286 VSGGKDSLVKLWDAKSGR-----ELCSFHG-------HKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRA 343 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~-----~~~~~~~-------h~~~I~si~fspdg~~Latgs----------~Dg~I~IwDl~t 343 (713)
++..+ |+|.+.|+...+ .+..+.. ....+.-++++++++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 999999965432 2222211 122334499999999888853 124799999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEEE
Q 005123 344 MKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~~ 393 (713)
++.+..+.. ...+..+++++ +++ +|++.+ .++.|.|+|+.+.+.+..+
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988874 56789999999 455 666555 6788999999887755554
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.1e-11 Score=131.77 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=154.6
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCe
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~ 251 (713)
+..+.+|...|+.++-..+.+.+++++.|++|++|.++.. .+..++..|+..|.++.|..+.++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 3457789999999988878899999999999999987642 3667788999999999999988887766 788
Q ss_pred EEEEEcCCCeeEEEEc--cCCCceEEEEEcC--CCCEEE-EEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEc
Q 005123 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHP--TKSLLV-SGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWN 321 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~--~h~~~V~sl~~sp--dg~~L~-sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fs 321 (713)
|.+||--.+..+..+. ...+.+..|...+ +..+++ .++...+|+++|.++++.+..++ +.+..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999976555443221 1122333333333 233344 44778999999999988776664 334668999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE-EEcCCC
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-WLVGHE 387 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I-wd~~~~ 387 (713)
+.|++++++-.+|+|.+.|.++|+.+..++.-......++- | .+..|+....|.++.| |..-++
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p-sdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999888766655555553 3 4567777778888888 865433
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.2e-08 Score=103.55 Aligned_cols=265 Identities=9% Similarity=0.129 Sum_probs=177.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCC--CceEEE--EeccCCCEEEEEEccCCCEEEEEeC-CCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQS--FNFEMI--LQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t--~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vw 213 (713)
.+.+.++-|+|++++++|.++-.+ |.|..|.++. +++... .......-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455678889999999999988654 6676666553 443322 2222334478999999999998865 4889999
Q ss_pred EcCC-Cceee--eeccCCCC----------eeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEE---ccCCCceEEE
Q 005123 214 QNNM-NNVKA--NKSAHKES----------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL---TGHGWDVKSV 276 (713)
Q Consensus 214 dl~~-~~~~~--~~~~~~~~----------V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl 276 (713)
-+.. +.+.. .+..|.+. +....+.|++++|++++. ..+|.+|++..++....- ......-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 32211 12234433 788899999999998865 247999999876543221 1345668899
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCC-ceEEEEc---------cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-
Q 005123 277 DWHPTKSLLVSGGK-DSLVKLWDAKSG-RELCSFH---------GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA- 343 (713)
Q Consensus 277 ~~spdg~~L~sgs~-Dg~I~IwDl~t~-~~~~~~~---------~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t- 343 (713)
.|+|++++..+.++ +++|.+|+.+.. ..+..+. ....+...|.+++||++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998777665 889999988763 2222222 12456788999999999998763 34688887764
Q ss_pred -Cee--EEEeecCCCCeEEEEEeCCCCCEEEEEECC-CcEEEEEcCCCCceEEEec--ccCCCeEEEEEc
Q 005123 344 -MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWH 407 (713)
Q Consensus 344 -~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~s 407 (713)
++. +.....+...-+.+.|++ ++++|+++..| ..|.+|.++.....+.... .......||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 322 222233444578899999 67777766654 4699999876665555443 233455566664
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.5e-11 Score=128.10 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=189.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
...+.+|..+|+.++--.+.+.+++++.|.+|++|.++. ..+..+++.|+..|.++.|..+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456889999999999888888999999999999998653 33567788999999999999888887665 688
Q ss_pred EEEEEcCCCceeeeec--cCCCCeeEEEEecC--CCE-EEEEECCCeEEEEEcCCCeeEEEEc-----cCCCceEEEEEc
Q 005123 210 IKYWQNNMNNVKANKS--AHKESVRDLSFCRT--DLK-FCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWH 279 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~--~~~~~V~~l~fs~d--g~~-Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~s 279 (713)
|.+||---++.+.... ...+.+..+...++ ... ++.|+...+|+++|.+.++-...++ +....+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999976665544221 12233333433332 233 4445778999999999887665554 234568999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE-EECCCCeeEEEeecCCCCeE
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL-YDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I-wDl~t~~~l~~~~~h~~~V~ 358 (713)
+.|++++++-.+|+|.+.|.++|+.+..+.........++ .|....|+....|.++.| |...++......+.......
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 9999999999999999999999999887765554444444 245567777778888888 87766655444443222222
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEE--ecccCCCeEEEEEcCCC-cEEEE-eCCcEEE
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEI--HNVHDNTVWDLAWHPIG-YLLCS-NDHTTKF 422 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~--~~~h~~~V~~l~~spdg-~~laS-~Dg~v~i 422 (713)
.+. .-+--|+++.....+.||.-...... +.. .....+..++++..|-+ .++++ ..|.|++
T Consensus 965 flq---svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FLQ---SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhh---ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 221 12445666666667777743211100 111 11234567777777654 44444 6666665
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=1.1e-08 Score=108.19 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=136.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeccCCCCeeE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-AIKYWQNNMNNVKANKSAHKESVRD 233 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-~I~vwdl~~~~~~~~~~~~~~~V~~ 233 (713)
+|++++..+. |...|.+...+-.+. .+|...|.-..+.-+++-++.|..|| .|-|+|.++++.... ...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 5777777774 456666654433322 34677799889988999999999999 899999998886654 456788999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceEEEEc
Q 005123 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFH 309 (713)
Q Consensus 234 l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~ 309 (713)
+..+++|++++++.....|.+.|++++.....-+...+-|+.++|++++++||.+--+| .|++||+.+++......
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999999999999999877666666778899999999999999987665 58999999877655443
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs 331 (713)
..+.-.+-+|.+|+++|..-+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 445556778999999987654
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=9e-09 Score=125.99 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=161.0
Q ss_pred EEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEec-c-------------CCCEEEEEEccCCCEEEEEeC-CCcEE
Q 005123 148 NRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQA-H-------------DHAIRSMVWSHNDNWMVSGDD-GGAIK 211 (713)
Q Consensus 148 ~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h-------------~~~V~sl~~spdg~~L~sgs~-DG~I~ 211 (713)
..++++.+ ++++++-+.++.|++||... +.+..+.. . -..-..|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55566666788899999764 44433332 1 113478899988887776654 46799
Q ss_pred EEEcCCCceeeeecc---------C-------CCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccC-----
Q 005123 212 YWQNNMNNVKANKSA---------H-------KESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGH----- 269 (713)
Q Consensus 212 vwdl~~~~~~~~~~~---------~-------~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h----- 269 (713)
++|+.++.+...... . -..-.+++|++ ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 999877654322110 0 11235799998 4556667777899999998776543 22111
Q ss_pred ----------CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEcc-------------C--------CCCeEE
Q 005123 270 ----------GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-------------H--------KNMVLC 317 (713)
Q Consensus 270 ----------~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~-------------h--------~~~I~s 317 (713)
......|+|+++++.| ++-+.++.|++||++++.......+ . ......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1235679999998854 4555678999999987653221100 0 112458
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-------------cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-------------~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++|+++|+++++-+.++.|++||..++....... ..-.....|++++ +++++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 8999999988888899999999998776543321 1112567899998 6788899899999999999
Q ss_pred CCCCc
Q 005123 385 GHETP 389 (713)
Q Consensus 385 ~~~~~ 389 (713)
++...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 77653
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=8.4e-11 Score=129.27 Aligned_cols=283 Identities=20% Similarity=0.350 Sum_probs=195.8
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCC--
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM-- 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~-- 217 (713)
...+.++.++|.|+-+|+++.-| ++|.|+..--.......| .-.|-.+.|++.. .+-++....-.-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788999999999999999877 666676543222222222 2346677887754 4555555556677888753
Q ss_pred -CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 -NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 -~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
..+...+.+|...|+++.|.+.. ..+++++.|-.|..||+++-.. +..+..-......|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 34556678899999999999865 5789999999999999987543 44444455677889998755556666667889
Q ss_pred EEEECCCCc-eEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeE-EEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGR-ELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~-~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l-~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++||++.+. .+..+++|...|+.++|+. ....+.+++.|++|++||....... ......+..|..-.+.|.++.+++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999998754 6778888999999999976 3456888999999999998754322 112223445666666664443333
Q ss_pred EEE----------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC----------cEE--EEeCCcEEEEecCC
Q 005123 372 SGS----------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG----------YLL--CSNDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs----------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg----------~~l--aS~Dg~v~iWd~~~ 427 (713)
--. .+.....|++.+....+..+.+|++.|..+.|-..+ ..| -|.|.++|+|-++.
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 211 222334466656666777888999999888875422 233 35999999998754
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=120.99 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=184.4
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC------------CEEEEEeCCCcEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND------------NWMVSGDDGGAIKY 212 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg------------~~L~sgs~DG~I~v 212 (713)
..-.+++|++.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|.. -+|++++..|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346788999888 6777665 479999999999999999999999999998731 25778888899999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEec---CC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~---dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~s 287 (713)
||......+..+..+.+.|.+++|-+ +. ..|++-....+|.+|+..+|+...+.........|+.++| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 99999999888999999999999965 23 4567777788999999999999888876667778899999 6677777
Q ss_pred EeCCCcEEEEECCC-------CceEEEEccCCC------------C-------------eEEEEEcCCCCEEEEEECCCe
Q 005123 288 GGKDSLVKLWDAKS-------GRELCSFHGHKN------------M-------------VLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 288 gs~Dg~I~IwDl~t-------~~~~~~~~~h~~------------~-------------I~si~fspdg~~Latgs~Dg~ 335 (713)
-+..|.|.+.+.-. ++.......|.. . ...++|+|.-+.++.....+.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778877776532 233332222211 0 122467886666666667788
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCC
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+.|+|++-..++..+....+.+..+.|-|+ ..+.|++.-.||.+.||-.+..
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 999999988888877766776777777774 3457889999999999987553
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=2.9e-10 Score=114.13 Aligned_cols=239 Identities=20% Similarity=0.363 Sum_probs=165.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEccCC--CEEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~------------~~V~sl~~spdg--~~L~s 203 (713)
..+.|++|.|...|.+|++|...|.|.+|.-+... ....+++|+ ..|..|.|..++ +.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999754422 223345543 457888998765 46777
Q ss_pred EeCCCcEEEEEcCCCceee-------------------------------------------eeccCCCCeeEEEEecCC
Q 005123 204 GDDGGAIKYWQNNMNNVKA-------------------------------------------NKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~-------------------------------------------~~~~~~~~V~~l~fs~dg 240 (713)
.+.|.+|++|.+....+.. .-..|...|++++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999865431100 003455668889999888
Q ss_pred CEEEEEECCCeEEEEEcCCCe---eEEEEccC-----CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce------E
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ---EERSLTGH-----GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRE------L 305 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~---~~~~l~~h-----~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~------~ 305 (713)
..++++ +|-.|.+|+++... .+..++.| ..-|++..|+|. .+.+...+..|.|++-|+|.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877776 46689999986432 23333333 245889999994 45777788889999999984321 1
Q ss_pred E----------EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCC------------CCe---EE
Q 005123 306 C----------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHR------------KDV---TA 359 (713)
Q Consensus 306 ~----------~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~------------~~V---~s 359 (713)
. -+.+....|..+.|+++|++|++-+. -+|+|||++..+ ++.++.-|. ..| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 0 11223456888999999999887653 579999998643 556654442 122 35
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+.||- +...+++|+.....-|+-+
T Consensus 343 isfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecC-Ccccccccccccceeeecc
Confidence 67887 6778888988888888764
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=4.1e-09 Score=116.92 Aligned_cols=288 Identities=13% Similarity=0.163 Sum_probs=192.7
Q ss_pred EeeCCCCCceEEEEEccCC------------CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC---C-CEE
Q 005123 138 TSLNKNRCSINRVLWTPTG------------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---D-NWM 201 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg------------~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd---g-~~L 201 (713)
.++..|...|+.|.|.|.. -+||++...|.|.|||......+..+..|.+.|..++|-+. . ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 3567789999999998732 25677778899999999999888899999999999999663 3 456
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEc-----------------------
Q 005123 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDF----------------------- 257 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl----------------------- 257 (713)
++-....+|.+|+..+|+...+.........|+.+.| |.+.++.-+..|.|.+-+.
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 6667778999999999988877766666666677666 3344444444444444332
Q ss_pred ---------------------------------------------------CCCeeEEEEccCCCceEEEEEcCCC--CE
Q 005123 258 ---------------------------------------------------ARCQEERSLTGHGWDVKSVDWHPTK--SL 284 (713)
Q Consensus 258 ---------------------------------------------------~~~~~~~~l~~h~~~V~sl~~spdg--~~ 284 (713)
+-..++..+.-..+.+.-+.|-|+. ..
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 1111111111122334445565644 47
Q ss_pred EEEEeCCCcEEEEECCC----------------Cce---EEEEcc-----------------------------------
Q 005123 285 LVSGGKDSLVKLWDAKS----------------GRE---LCSFHG----------------------------------- 310 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t----------------~~~---~~~~~~----------------------------------- 310 (713)
|++...||.+.||-.+. ++. ++..+.
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 88888999999986543 111 110000
Q ss_pred CCC----------------------CeEEEEEcCCC---------------------------------CEEEEEECCCe
Q 005123 311 HKN----------------------MVLCVKWNQNG---------------------------------NWVLTASKDQI 335 (713)
Q Consensus 311 h~~----------------------~I~si~fspdg---------------------------------~~Latgs~Dg~ 335 (713)
|.. ...-+.+|.|| .++|+|+..|+
T Consensus 369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 000 00001112222 24778999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC----------CCcEEEEEcCCCCceEE--EecccCCCeEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVE--IHNVHDNTVWD 403 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~----------DG~I~Iwd~~~~~~~~~--~~~~h~~~V~~ 403 (713)
|.++|+.++..-..|..|...|.++.|-- ...|++.+. -+.+.|-|++++..... .....+.+|..
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999999999999999999999974 444554433 23577788887754322 23345678999
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
|..+..+.+++- .|..+.+||+..
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhcc
Confidence 999999988875 999999999843
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=3.1e-09 Score=105.14 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=156.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceE-EEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVR 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~ 232 (713)
...+||.|+..|.+.+|...+.+.. .....|...|+-+.-.-| ...+..++.|.++++.+++.+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999998865543 333445544433221112 23466778888888888776554433322224488
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCee--EE-EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQE--ER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-- 307 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~--~~-~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~-- 307 (713)
++++++|++++++.++...|..|.+.+... ++ ......+.-.+.+|+.....+|+++.||++.|||++.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 999999999999999999999999865322 22 2233445567889999999999999999999999997543322
Q ss_pred ---EccCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeeEEEeec-------CCC-CeEEEEEeCCCCCEEEEEE
Q 005123 308 ---FHGHKNMVLCVKWNQNG--NWVLTASKDQIIKLYDIRAMKELESFRG-------HRK-DVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 308 ---~~~h~~~I~si~fspdg--~~Latgs~Dg~I~IwDl~t~~~l~~~~~-------h~~-~V~sl~fsp~~~~~lasgs 374 (713)
-..|++.+..+.|++-| .+|+..-.-+.+.|.|+++++....+.. |.. .|....|+. ++.-+.+.+
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~ 321 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN 321 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence 23488999999999754 4566666667899999999876654432 222 377777776 344444444
Q ss_pred CCCcEEEEEcCC
Q 005123 375 LDGSIFHWLVGH 386 (713)
Q Consensus 375 ~DG~I~Iwd~~~ 386 (713)
++ .+.-|++.+
T Consensus 322 e~-~~ae~ni~s 332 (344)
T KOG4532|consen 322 EL-QGAEYNILS 332 (344)
T ss_pred ch-hhheeeccc
Confidence 33 455565543
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.4e-09 Score=115.59 Aligned_cols=250 Identities=17% Similarity=0.253 Sum_probs=168.7
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC--CEEEE-----EeCCCcEEEEEcCCCce
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVS-----GDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~s-----gs~DG~I~vwdl~~~~~ 220 (713)
++..|+.|..+.|- -..+.|.+|++.+.+.+ .-..|...|+.+.+|+.. ..+|+ .+.-+.|+||.......
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 58889988764442 23457999998875433 234468889999999874 33443 34457899998763221
Q ss_pred ---eeeeccCCCCeeEEEEecCCCE-EEE--EECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 221 ---KANKSAHKESVRDLSFCRTDLK-FCS--CSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 221 ---~~~~~~~~~~V~~l~fs~dg~~-Las--~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
+....-....-..+.|+.-+.- |+. ...| .++++.++...++...+. ..+.|.++.|+++++-+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 1111122333445677766643 222 2223 368888887444444443 57899999999999765
Q ss_pred EE--EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 286 VS--GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 286 ~s--gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
++ |-.-.++.|||++ ++.+..+ -.+.-+++-|+|.|++|+.++- .|.|-|||+.+.+++..+.... .+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEE
Confidence 55 4556789999988 5666555 3566788999999999997764 4789999999988888887544 4667
Q ss_pred EEeCCCCCEEEEEEC------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 361 AWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 361 ~fsp~~~~~lasgs~------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
.|+| ++.+|+|++. |+.++||+. ++..+.... .....+.+.|-|-
T Consensus 361 eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~--f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 361 EWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM--FKSELLQVEWRPF 411 (566)
T ss_pred EEcC-CCcEEEEEeccccEEecCCeEEEEe-cCceeehhh--hhHhHhheeeeec
Confidence 8999 7888887765 788999998 343322221 1225788888754
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=2.1e-08 Score=120.74 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=181.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCC---------------C--------CceEEEEec---------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ---------------S--------FNFEMILQA--------------- 184 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---------------t--------~~~~~~l~~--------------- 184 (713)
-.+.|.|++||||+..|+..+.+++|.+.+.. . |+....|.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 45689999999999999999999998876411 0 111111111
Q ss_pred ---------cCCCEEEEEEccCCCEEEEEeC---C---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-
Q 005123 185 ---------HDHAIRSMVWSHNDNWMVSGDD---G---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD- 248 (713)
Q Consensus 185 ---------h~~~V~sl~~spdg~~L~sgs~---D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~- 248 (713)
.++.-..|+|--||.++|+.+. + ..|+||+-+ +.+..+-....+--.+++|.|.|++||+.-.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 2334567899999999998764 2 578999865 5554444444444567899999999998765
Q ss_pred --CCeEEEEEcCCCeeEEEEc----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEcc-CCCCeEEEE
Q 005123 249 --DTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--CSFHG-HKNMVLCVK 319 (713)
Q Consensus 249 --Dg~I~iwDl~~~~~~~~l~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~--~~~~~-h~~~I~si~ 319 (713)
...|.+|.- +|.....|. .....|..+.|+.|+..|++...|. |.+|-..+..-. ..+.. ....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 345777763 333333332 3456899999999999999988665 999998875422 22221 233355599
Q ss_pred EcCC-CCEEEEEECCCeEEEEECC----CC--------eeEEEee-----------------------cCCCCeEEEEEe
Q 005123 320 WNQN-GNWVLTASKDQIIKLYDIR----AM--------KELESFR-----------------------GHRKDVTALAWH 363 (713)
Q Consensus 320 fspd-g~~Latgs~Dg~I~IwDl~----t~--------~~l~~~~-----------------------~h~~~V~sl~fs 363 (713)
|++. ...|.+.+.++.+.++++. .+ ..+..+. .....|.+++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 9984 4557777776766655432 11 0111111 134679999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCce--------EEE---------ecccCCCeEEEEEcCCCcEEEE--e---CCcEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQ--------VEI---------HNVHDNTVWDLAWHPIGYLLCS--N---DHTTK 421 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~--------~~~---------~~~h~~~V~~l~~spdg~~laS--~---Dg~v~ 421 (713)
+ +...+++-..||.|.+|........ ..+ .......+..++|..+..+++. . ...+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9 5666899999999999985433211 001 0112345788889888865543 3 25777
Q ss_pred EEecCCC
Q 005123 422 FWCRNRP 428 (713)
Q Consensus 422 iWd~~~~ 428 (713)
++++...
T Consensus 515 ~~~~~~~ 521 (928)
T PF04762_consen 515 LVDIDDS 521 (928)
T ss_pred EEEeccC
Confidence 7777433
No 282
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.19 E-value=7e-09 Score=114.73 Aligned_cols=260 Identities=15% Similarity=0.057 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--- 231 (713)
++..|++++.+|.|+.+|.++++.+-+.........+... .+..+++++.++.|..+|.++++.+.........+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3567888889999999999999887666543322222222 24567778889999999999999887664321111
Q ss_pred --eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-------ceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005123 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 232 --~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-------~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~ 300 (713)
.+-.. .+..++.++.++.|..+|..+++.+........ ....+..+| .+..+++++.++.+..+|.+
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 234577788899999999998877654431110 011111122 25567778889999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
+++.+.+... .....+.. ++..|++++.++.|..+|.++++.+....... ....+... .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEE
Confidence 9988765542 11222222 46678888899999999999998876543221 12223333 24567888999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+++|..+++.+.+.............+..+..++++.||.|..+++
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 9999988765544432222222233444555666779999888764
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.8e-08 Score=111.80 Aligned_cols=210 Identities=5% Similarity=-0.064 Sum_probs=133.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE-EEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
..|.+-|....+ .+.+.... .+...+|++|++. ++..+. +..|.++|+.+++..... ...+.+....|++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 355565554443 33333333 7778999999985 554433 356888899888765543 3455666788999998
Q ss_pred EEEEEE-C--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCe
Q 005123 242 KFCSCS-D--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMV 315 (713)
Q Consensus 242 ~Las~s-~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I 315 (713)
.|+... . +..|.++|+.+++. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+.... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 776543 2 34688889877754 3444344334567899999988877643 2 588889988776443321 111
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCc--EEEEE
Q 005123 316 LCVKWNQNGNWVLTASKD---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGS--IFHWL 383 (713)
Q Consensus 316 ~si~fspdg~~Latgs~D---------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~--I~Iwd 383 (713)
...|||||++|+..+.. ..|.+.|+.+++.. .+... .......|+| +++.|+..+. .+. |.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECC-CCCEEEEEEccCCcEEEEEEe
Confidence 24899999999876643 36888899877643 33322 2234688999 5665554443 333 55555
Q ss_pred cC
Q 005123 384 VG 385 (713)
Q Consensus 384 ~~ 385 (713)
++
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.18 E-value=4e-08 Score=101.34 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=148.9
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc-
Q 005123 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA- 226 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~- 226 (713)
+++|.+ ++.++++-...+.|+.||..+++... +.... ...+++...+..|+++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 678998 66666666678999999998876543 33222 67777773345666666544 55559888865544433
Q ss_pred ----CCCCeeEEEEecCCCEEEEEECC--------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE-EEeCCCc
Q 005123 227 ----HKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSL 293 (713)
Q Consensus 227 ----~~~~V~~l~fs~dg~~Las~s~D--------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~Dg~ 293 (713)
.....+++++.++|++.++.... |.|..++.. ++...... .....+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34578999999999987776654 567778876 44433333 455688999999998776 4566778
Q ss_pred EEEEECCCCce-------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe-CC
Q 005123 294 VKLWDAKSGRE-------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PF 365 (713)
Q Consensus 294 I~IwDl~t~~~-------~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs-p~ 365 (713)
|..||+..... +..+....+....+++..+|+++++....+.|.++|.+ ++.+..+......+++++|. ++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99998863221 11222223347889999999988888889999999988 88888888776789999995 42
Q ss_pred CCCEEEEE
Q 005123 366 HEEYFVSG 373 (713)
Q Consensus 366 ~~~~lasg 373 (713)
...+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 34455554
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=138.77 Aligned_cols=196 Identities=19% Similarity=0.301 Sum_probs=158.1
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
+.+-..|.++.-+|..-+.++|+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3345678888888888999999999999999988876555443 344889999999999999999999999999987 45
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
.....+.|.....++.|-. ..+++++ .++.+.+||..-. ..-..-..|...++++++.|.-.+|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 6667778888888888874 5666654 4778999997532 21122267999999999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 338 IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
|||++..+.++.+.. ++ ...+|++++..|.|+||++........
T Consensus 2362 l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhc
Confidence 999998777777664 33 478999999999999999976644333
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.3e-08 Score=112.96 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=129.6
Q ss_pred ceEEEEEccCCCE-EEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCC--CcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRR-LITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDG--GAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~-Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~D--G~I~vwdl~~~ 218 (713)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 6654443 569999998876655443 55667778999999877643 334 46777788777
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC----
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---- 291 (713)
+... +..+........|++||+.|+..++. + .|.++|+.+++..+.... ... ...|+|||+.|+..+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 6544 33333334566899999988777643 2 688889887766443322 111 35899999988887654
Q ss_pred -----CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCC
Q 005123 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRA 343 (713)
Q Consensus 292 -----g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t 343 (713)
..|.+.|+.+++.. .+... .......|+|||+.|+..+.++ .|.++++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 26888899887643 33322 2344689999999888766432 466777764
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=8.4e-09 Score=102.12 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=152.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEE-EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLS-FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~-fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~ 274 (713)
+..+|+.|+..|...+|...+++....+ ..+...|+-+. .+.....+..++.|.++++.+++-......+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4578999999999999999877644333 22333332221 111234577888999999998865443333322223488
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-ce-EE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE---
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE-LC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--- 348 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~-~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--- 348 (713)
++++++|++++++.++...|..|.+... +. ++ ........-.+.+|+.....+|+++.||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988653 22 23 223344556788999999999999999999999999754432
Q ss_pred --EeecCCCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcCCCCceEEEec------ccC-CCeEEEEEcCCCcEE-EEeC
Q 005123 349 --SFRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHN------VHD-NTVWDLAWHPIGYLL-CSND 417 (713)
Q Consensus 349 --~~~~h~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~~~~~~~~~~~------~h~-~~V~~l~~spdg~~l-aS~D 417 (713)
+-..|.+.+..+.|++.+. ++|+..-.-+.+.+.|+++......+.. .|. ..|..-.|+.++.-+ ++..
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2235889999999997332 3555555567899999988765443332 122 236666666655322 2333
Q ss_pred CcEEEEecCC
Q 005123 418 HTTKFWCRNR 427 (713)
Q Consensus 418 g~v~iWd~~~ 427 (713)
-.+.=|+++.
T Consensus 323 ~~~ae~ni~s 332 (344)
T KOG4532|consen 323 LQGAEYNILS 332 (344)
T ss_pred hhhheeeccc
Confidence 3444455433
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.14 E-value=1.3e-08 Score=112.61 Aligned_cols=264 Identities=7% Similarity=-0.024 Sum_probs=165.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC----------CE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----------~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+-+|.++++.+-....... .+ ..+.. ++..+++++.+|.|..+|.++++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55788888888999999988887655543220 00 01122 3567788888999999999999987766
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
...........+ .+..+++++.++.|..+|.++++.+..+......+ .+-.. .+..+++++.++.|..+|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 543322112222 24567778889999999999999887765321111 11111 2346777888999999999
Q ss_pred CCCceEEEEccCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 300 KSGRELCSFHGHKN-------MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 300 ~t~~~~~~~~~h~~-------~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
.+++.+.+...... ....+..+| .+..|++++.++.+..+|..+++.+...... ....+.. .+..|
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~v 297 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGRI 297 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCEE
Confidence 99987665431110 011111122 3556777888999999999999887655421 1222332 35567
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+.++.+|.|..+|..+++..............+..+..+..++++.||.|.+.|.+..+.
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 777889999999998776543322111122233334334345556899999888765443
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=6.2e-08 Score=118.72 Aligned_cols=237 Identities=11% Similarity=0.089 Sum_probs=155.4
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecc-C-------------CCCeeEEEEecCCCEEEEEEC-CCeEE
Q 005123 190 RSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA-H-------------KESVRDLSFCRTDLKFCSCSD-DTTVK 253 (713)
Q Consensus 190 ~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~~~~-~-------------~~~V~~l~fs~dg~~Las~s~-Dg~I~ 253 (713)
..++++.+ ++++++-..++.|++||..... +..+.. . -..-..|+++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788765 4556666677889999976543 332221 0 123578899988887666654 56899
Q ss_pred EEEcCCCeeEEEEccC-----------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccC----
Q 005123 254 VWDFARCQEERSLTGH-----------------GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---- 311 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h-----------------~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---- 311 (713)
++|+.++.. .++.+. ...-..|+|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877643 333210 12346799999 5556666677889999999876543 22111
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeeEEEee-------------cC--------CCCeE
Q 005123 312 -----------KNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKELESFR-------------GH--------RKDVT 358 (713)
Q Consensus 312 -----------~~~I~si~fspdg~~La-tgs~Dg~I~IwDl~t~~~l~~~~-------------~h--------~~~V~ 358 (713)
-...+.|+|++++++|+ +-+.++.|++||++++....... .. -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12346799999998555 45567899999998765321110 00 11246
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec------------ccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------------VHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~------------~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.+++++ +++++++-+.+++|++||..+.......-. +.-.....|+++++|.++++ .+++|++||
T Consensus 808 Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 888998 678888889999999999876543211111 11235778999999977765 789999999
Q ss_pred cCCCCC
Q 005123 425 RNRPGD 430 (713)
Q Consensus 425 ~~~~~~ 430 (713)
++....
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 976543
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.13 E-value=2.6e-08 Score=101.63 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=144.1
Q ss_pred CCcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
+|.|..||..+++.+-...... ....+. ...+++++++++.++.|..||..+++.+..+.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6889999999999887776421 222221 223577888888999999999999998877765 22222212 224566
Q ss_pred EEEEECCCeEEEEEcCCCeeEEEE-ccCC---CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCC----
Q 005123 243 FCSCSDDTTVKVWDFARCQEERSL-TGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---- 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~~l-~~h~---~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~---- 314 (713)
+++++.++.|+.+|..+++.+... .... .........-+++.++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999998874 3221 11122222223788899988999999999999998877653322
Q ss_pred ------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 315 ------VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 315 ------I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+..-.+..++ .+++++.++.+..+|+.+++.+.... ...+..+ ... .+..|++++.++.|.+||+++++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 1122222244 77777777754444999999775333 2233332 223 56677777799999999998876
Q ss_pred ce
Q 005123 389 PQ 390 (713)
Q Consensus 389 ~~ 390 (713)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=2.2e-08 Score=105.82 Aligned_cols=148 Identities=10% Similarity=0.059 Sum_probs=122.5
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCC-cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSG-EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg-~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+|+..|.-..+.-+++-++.|..|| .|-|||..+++.. .+...-+.|.++..++||++++++.....|.+.|+++++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999999999999999 8999999887654 455567889999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
....-+...+-|+.+.|++++++||-+--+| .|+++|+..++...... ....-.+-+|.+|+++|..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 8877777888999999999999999876655 69999998876654433 3344456788888887766543
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-09 Score=106.44 Aligned_cols=240 Identities=15% Similarity=0.324 Sum_probs=162.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----eeeeeccC------------CCCeeEEEEecCC--CEEEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----~~~~~~~~------------~~~V~~l~fs~dg--~~Las~ 246 (713)
...|++|.|...|.+|++|...|.|.+|.-+... ....+..| .+.|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999754332 11112222 3468889998765 457788
Q ss_pred ECCCeEEEEEcCCCee-------------------------------------E-----EEE-ccCCCceEEEEEcCCCC
Q 005123 247 SDDTTVKVWDFARCQE-------------------------------------E-----RSL-TGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~~-------------------------------------~-----~~l-~~h~~~V~sl~~spdg~ 283 (713)
+.|.+|++|.+..... + +.+ ..|..-|++|+|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998743210 0 001 24666788999999888
Q ss_pred EEEEEeCCCcEEEEECCCCc---eEEEEccCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCee------EE
Q 005123 284 LLVSGGKDSLVKLWDAKSGR---ELCSFHGHK-----NMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE------LE 348 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~-----~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~------l~ 348 (713)
.++++. |=.|.+|++.--. .+..++.|+ .-|++..|+|. .+.+...++.|.|++.|+|.... +.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 887764 6789999886432 222333333 35889999994 56677888999999999983211 11
Q ss_pred ----------EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC------------CCe---EE
Q 005123 349 ----------SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD------------NTV---WD 403 (713)
Q Consensus 349 ----------~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~------------~~V---~~ 403 (713)
-|..-.+.|..+.|++ ++++|++-+.- +|+|||++..+..+.....|. +.| ..
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1122345688999998 88888887665 899999988877666553332 233 34
Q ss_pred EEEcCCCcEE--EEeCCcEEEEecCCC
Q 005123 404 LAWHPIGYLL--CSNDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg~~l--aS~Dg~v~iWd~~~~ 428 (713)
+.|+.|...+ +|..+..-||-.+..
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred EEecCCcccccccccccceeeeccccC
Confidence 6777766433 335666666654433
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=8.6e-10 Score=121.48 Aligned_cols=240 Identities=19% Similarity=0.304 Sum_probs=174.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeee-ccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANK-SAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFAR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~-~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~-- 259 (713)
.+.+.++.++|.|+-++++++-|. .+.|++.. ....-+ ....-.|-++.|++. ..+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 567788899999999999988774 45565543 221111 112234667777764 34555555566778999843
Q ss_pred -CeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 260 -CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 260 -~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
......+.+|...|+.+.|++. -..+++++.|..+..||+++-. .+..+.......+.|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3456677889999999999985 4589999999999999999854 556666666778889998855556666777889
Q ss_pred EEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 337 KLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 337 ~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+|||++.+ ..+..+++|...|..++|.......+.+++.|++|++||.++.....+.....+..|+.-.+.|-|.-.+.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999865 56788999999999999988677789999999999999997766554444445677888888886644332
Q ss_pred ----eCCcEEEEecC
Q 005123 416 ----NDHTTKFWCRN 426 (713)
Q Consensus 416 ----~Dg~v~iWd~~ 426 (713)
.++.+-+++.+
T Consensus 263 mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCE 277 (1081)
T ss_pred ccccCCeeeeecccc
Confidence 45555555543
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.5e-10 Score=127.58 Aligned_cols=216 Identities=16% Similarity=0.291 Sum_probs=161.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl 215 (713)
+++..|....+|++|+-+.++|++|+..|.|++|++.++.......+|.++|+.|.=+.||..+++.+.-. ...+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999887665433 4679987
Q ss_pred CC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-c---cCCCceEEEEEcCCCCEEEEEeC
Q 005123 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-T---GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 216 ~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~---~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
.+ +.....+ ....++.|+.....-+.|+....+.|||+.++..+.++ . +....-++..|+|+.++++ .
T Consensus 1175 ~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred ccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence 64 2233332 34457788766544455555567999999998776552 2 2223347889999888776 3
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|| .+||++..+.++.|......+ .-.|+|+|+-++.-+ .|||+++.+.++....-+ -+.+.|+. .++++
T Consensus 1248 dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNs-tG~Vm 1316 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNS-TGDVM 1316 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEecc-Cccch
Confidence 44 489999988888877555333 346999999888865 499999988877654332 25666776 44444
Q ss_pred E
Q 005123 371 V 371 (713)
Q Consensus 371 a 371 (713)
.
T Consensus 1317 Y 1317 (1516)
T KOG1832|consen 1317 Y 1317 (1516)
T ss_pred h
Confidence 3
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=4.7e-09 Score=109.44 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=114.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~ 218 (713)
.+..+..++++++||++..+....++++.... +..... -...-+++.|..+...+.++. +...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556677788888888888776666654432 222222 223334455555555555544 4445556655554
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
... .+-+|-+.+++++|++|+++|+++..|..|+|-.+.....+.. .-+|...|..+++.+ +..|++++.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 433 3458999999999999999999999999999988765444443 356999999999985 4568999999999999
Q ss_pred ECCCCceEEEEc
Q 005123 298 DAKSGRELCSFH 309 (713)
Q Consensus 298 Dl~t~~~~~~~~ 309 (713)
|+++++.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987664
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.8e-07 Score=95.36 Aligned_cols=215 Identities=12% Similarity=0.003 Sum_probs=139.6
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
.+|.|..||..+++.+....... .+.... ...++.++++++.++.|..||..+++.+..+............ ++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETT
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--ccc
Confidence 36899999999998887764421 122222 3336777888899999999999999988777642221111222 356
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-ccCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC---
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSF-HGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--- 356 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~---~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--- 356 (713)
.+++++.|+.|+.+|.++|+.+.+. .... ..........+++.++++..++.|..+|+++++.+..+......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999998884 3221 11222233334788999999999999999999998888764422
Q ss_pred -------e-EEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCC
Q 005123 357 -------V-TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 357 -------V-~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~ 427 (713)
+ ..+.+. ++ .++.++.++.+..+|+.++....... ...+..+....++.+++ +.|+.|.+||++.
T Consensus 158 ~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 223332 33 67777777764444998887443222 33344433344444444 4699999999866
Q ss_pred CC
Q 005123 428 PG 429 (713)
Q Consensus 428 ~~ 429 (713)
.+
T Consensus 232 G~ 233 (238)
T PF13360_consen 232 GK 233 (238)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=6.5e-09 Score=108.41 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=116.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeccCCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCe
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQ 261 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~ 261 (713)
.+..+..++++++||++..+..+.++++..... ..........-+++.|..+...+..+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 344556677888888888888877777655432 111122334455666666666665554444 4555554443
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
....+-+|.+-++.|+|++|+++|+++..|..|+|-....--.+..+ -+|+..|..++.-++ ..|++++.|++|++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 33445579999999999999999999999999999877655555544 469999999998754 5689999999999999
Q ss_pred CCCCeeEEEee
Q 005123 341 IRAMKELESFR 351 (713)
Q Consensus 341 l~t~~~l~~~~ 351 (713)
+++++.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999987664
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.98 E-value=4.7e-09 Score=103.53 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=120.1
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCce------------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF------------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~------------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
|+.+.++.+- .|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555433 466666666555554333222 222333333333333344567899999999999998
Q ss_pred cCCCce-eeeeccCCCCeeEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEE
Q 005123 215 NNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 215 l~~~~~-~~~~~~~~~~V~~l~fs~dg~~Las~s-----~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~s 287 (713)
.+.... ...+......-.+.++...++.|.++. .-+..++|+++-.+.+..-......|.+++-+| ....+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 765211 111111111122233333444443321 123466676654433322222334599999998 4567888
Q ss_pred EeCCCcEEEEECCCCce-EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q 005123 288 GGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~-~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t 343 (713)
|+.||.+-+||.++... +..++.|+..|+.+-|+| ++..|+++++||.+..||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 89999999999998643 334678999999999999 688999999999999999875
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.96 E-value=2.6e-07 Score=107.99 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=158.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc----CCC-
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN----NMN- 218 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl----~~~- 218 (713)
.+.|.++.|..+..-|+.+..+|.|.+-|.++.... ....-+..|.+++|++|+..++..+.+.+|.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999999999999999999999998876543 33445788999999999999998888777766431 000
Q ss_pred ------------------ceeeeecc---------------------CCCCeeEEEEecCCCEEEEEE-----CCCeEEE
Q 005123 219 ------------------NVKANKSA---------------------HKESVRDLSFCRTDLKFCSCS-----DDTTVKV 254 (713)
Q Consensus 219 ------------------~~~~~~~~---------------------~~~~V~~l~fs~dg~~Las~s-----~Dg~I~i 254 (713)
+....+.+ ..+.=+.|+|--||.++++.. ..++|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00011110 111223589999999998842 2379999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceEE----EEccCCCCeEEEEEcCCCCEE
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRELC----SFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~~~~~----~~~~h~~~I~si~fspdg~~L 327 (713)
||-+ +..-..-....+--.+++|-|.|.++++-. .|+.|.+|.-+ |-... .+......|..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence 9976 332222222334456899999999888753 35679898744 33222 222233448999999999999
Q ss_pred EE---EECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 328 LT---ASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 328 at---gs~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++ ......|++|-+.+.. ....+....... +.|+|.....|..-..+|.+.++|+
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 87 4455569999988743 233333333323 8899866666666667777777665
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.1e-09 Score=108.24 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=170.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNM 217 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~ 217 (713)
-|++.|+.+..+ ..+++++++.||.++.|.-.. -+.++.+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777777655 456899999999999997443 3455666788889999999999999999777 99999999987
Q ss_pred Cceeeeecc--CCCCeeEEEEecCCC-EE-EEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 218 NNVKANKSA--HKESVRDLSFCRTDL-KF-CSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 218 ~~~~~~~~~--~~~~V~~l~fs~dg~-~L-as~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
-..+.-++. ....+..+.-..|.. .| ++.-.++.|.|+|-.... ......-|...|.++.+++.++.+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 665433222 222222221111111 22 333457899999965432 333445588999999999999999999999
Q ss_pred CcEEEEECCC------CceEE---------EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----
Q 005123 292 SLVKLWDAKS------GRELC---------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---- 352 (713)
Q Consensus 292 g~I~IwDl~t------~~~~~---------~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---- 352 (713)
|.|..|.... .+... .+...+...+++.|++++..+.+-+.|..|+++++++++.+..+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 11111 1223456789999999999999999999999999999876554421
Q ss_pred ----------------------------CCC-CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 353 ----------------------------HRK-DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 353 ----------------------------h~~-~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|.. .-+.+.|.. .+++|+-++-- -|+|.++.++.
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTIL-GIKVINLDTNT 308 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeecce-eEEEEEeecCe
Confidence 111 134566766 67788777655 47777776654
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=9.2e-07 Score=91.80 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=158.6
Q ss_pred eEEEEEcc-CCCEEEEEECCCc-EEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEEcC-
Q 005123 147 INRVLWTP-TGRRLITGSQSGE-FTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDD-----GGAIKYWQNN- 216 (713)
Q Consensus 147 V~~v~~sp-dg~~Latgs~dg~-V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~-----DG~I~vwdl~- 216 (713)
...++.+| +...++.+-.-|+ +.+||..+++....+....+.- -.-+||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 4566677777665 6789999999888776544332 24689999999998743 4899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEEC------------------CCeEEEEEcCCCeeEEE--E--ccCCCceE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------------------DTTVKVWDFARCQEERS--L--TGHGWDVK 274 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~------------------Dg~I~iwDl~~~~~~~~--l--~~h~~~V~ 274 (713)
+-..+.++..+.-.-..+.+.+|++.|+++.. +-+|.+.|..+++.+.. + ..|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 56777777777777788899999988887632 23466677788887666 3 33777899
Q ss_pred EEEEcCCCCEEEEEeCCCc-------EEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005123 275 SVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLY 339 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~-------I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs-~Dg~I~Iw 339 (713)
.+++..+|..++..-..+. |.+++.. +.+..+. .....|-+|+++.++.++++.+ .-+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999876655544332 4444433 2232222 3457899999999998887655 67789999
Q ss_pred ECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 340 DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 340 Dl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
|..+++.+..... ..+..++... ++ ++++. ..|.+
T Consensus 245 d~~tg~~~~~~~l--~D~cGva~~~-~~-f~~ss-G~G~~ 279 (305)
T PF07433_consen 245 DAATGRLLGSVPL--PDACGVAPTD-DG-FLVSS-GQGQL 279 (305)
T ss_pred ECCCCCEeecccc--CceeeeeecC-Cc-eEEeC-CCccE
Confidence 9999998876653 3456776655 33 44444 44554
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=1.5e-06 Score=89.53 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=138.4
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-
Q 005123 191 SMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (713)
Q Consensus 191 sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~- 268 (713)
+++|.+ ++.++++-...+.|..|+..++...... ... ...+++...+..|+++..++ +.++|..+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 678887 5556666667899999999888664422 212 77788874345666666554 56669988865544432
Q ss_pred ----CCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEE-EEECCCe
Q 005123 269 ----HGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQI 335 (713)
Q Consensus 269 ----h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~La-tgs~Dg~ 335 (713)
.....+.++++++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34678899999999977766543 557777877 44433333 355678999999999776 4556788
Q ss_pred EEEEECCCCe----eEEEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 336 IKLYDIRAMK----ELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 336 I~IwDl~t~~----~l~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|..||+.... ....+ ....+..-.+++.. +++++++....+.|.++|.+ ++. +..+......+++++|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEE
Confidence 9999985321 11222 22223478899998 78888888889999999986 443 34333335689999995
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=7.3e-09 Score=116.97 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=143.7
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEE
Q 005123 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si 318 (713)
+...++.|+.-..+..+|+++.+..+........|+-+..+ ++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45667778778889999999988877766555556666654 8899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE---cCC
Q 005123 319 KWNQNGNWVLTASK---------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL---VGH 386 (713)
Q Consensus 319 ~fspdg~~Latgs~---------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd---~~~ 386 (713)
.. .|++|++++. |..|+|||+|+.+.+.-+.-+.++ .-+.|+|.-...+++++..|.+.+-| +.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 66 6888988764 567999999998887766655554 67788887778899999999999999 433
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
..............+..+++++++..+|- .+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32223333334456999999999988875 889999997
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=2.1e-07 Score=99.66 Aligned_cols=251 Identities=14% Similarity=0.195 Sum_probs=168.9
Q ss_pred EEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC
Q 005123 169 TLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 169 ~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
.+|+..+......+....-.+..++|||.|.+|++.... -|.+|.-.....+..+ ....|..+.|++++++|.+-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ecCCceecccCcccceeeeecc
Confidence 456655555555555567789999999999999987764 4899988777654443 3467899999999999998754
Q ss_pred C---------------CeEEEEEcCCCeeEEEEccCCCc--eE-EEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEc
Q 005123 249 D---------------TTVKVWDFARCQEERSLTGHGWD--VK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH 309 (713)
Q Consensus 249 D---------------g~I~iwDl~~~~~~~~l~~h~~~--V~-sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~ 309 (713)
. +.+.+||+.++..+..+...... .. -+.|+-+.++++-.. ...|+|+++ +... ...+.
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchh
Confidence 3 35999999999998888765544 44 678888887766553 356999997 3321 11122
Q ss_pred cC-CCCeEEEEEcCC--CCEEEE-----EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE----E---
Q 005123 310 GH-KNMVLCVKWNQN--GNWVLT-----ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG----S--- 374 (713)
Q Consensus 310 ~h-~~~I~si~fspd--g~~Lat-----gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg----s--- 374 (713)
.. ...|...+|+|. +..||+ ...++.++||.+...+.+.+-......=..+.|.. .+++|++- .
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksn 248 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSN 248 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecc
Confidence 11 256788889885 334443 45677899999987666554443444446788888 45544321 1
Q ss_pred ----CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEE--eCCcEEEEecCC
Q 005123 375 ----LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ----~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS--~Dg~v~iWd~~~ 427 (713)
.+.+++|+++......+.. .-.+.|.+++|.|++ +.+++ .+-.+.++++..
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 1346888888644433333 457899999998876 33333 566677776643
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=2e-06 Score=85.28 Aligned_cols=264 Identities=10% Similarity=0.045 Sum_probs=145.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
-|++++.|+.+|.+++.+.++++....+...+.--.......++.+|..++.|++.+..|..+...+.+.+.......+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 57789999999999999999997776665433222233445688999999999999999999988877765544444444
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKS--VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~s--l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
++.+-...|+.+...|.|.--..+... .+.... ....|.+ ++. +..+..++-||.+.-+| .+|+.+..+.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 455533445555556665555544431 111111 1122221 111 34456666777777777 5566666544
Q ss_pred CCCCeEE-EEEc-CCCCEEEEEECCC--------eEEEEECCCCeeEEEeecCCCCeEEEEEeC---CCCCEEEEEECCC
Q 005123 311 HKNMVLC-VKWN-QNGNWVLTASKDQ--------IIKLYDIRAMKELESFRGHRKDVTALAWHP---FHEEYFVSGSLDG 377 (713)
Q Consensus 311 h~~~I~s-i~fs-pdg~~Latgs~Dg--------~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp---~~~~~lasgs~DG 377 (713)
..+.|.. -+-+ |....|..+..+- .-.+|...++...+.+...+ ...+++. ...++|..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCC
Confidence 2232211 1111 2223333333322 34456666554433332111 1122221 1256788899999
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcC---------CCcEEE-EeCCcEEEEecCC
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---------IGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp---------dg~~la-S~Dg~v~iWd~~~ 427 (713)
++.|..++..-..+....+.-..+..+..+. +++++. ..|..|+.||++.
T Consensus 293 kv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEecccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 9998866433211111111112233332221 455554 4999999999864
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=3.2e-06 Score=85.47 Aligned_cols=227 Identities=14% Similarity=0.197 Sum_probs=133.2
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHD---HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
++.+.||++||+.- |..|.|-..++. ..+......+ -.=+.++||+|+.+||.+...|+|+++|+...++...-
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56778898777665 556777654431 2223333222 23578999999999999999999999998764433211
Q ss_pred ------ccCCCCeeEEEEecCC------CEEEEEECCCeEEEEEcCC-----CeeEEEEc--c-CCCceEEEEEcCCCCE
Q 005123 225 ------SAHKESVRDLSFCRTD------LKFCSCSDDTTVKVWDFAR-----CQEERSLT--G-HGWDVKSVDWHPTKSL 284 (713)
Q Consensus 225 ------~~~~~~V~~l~fs~dg------~~Las~s~Dg~I~iwDl~~-----~~~~~~l~--~-h~~~V~sl~~spdg~~ 284 (713)
......|..+.|.... ..|++-..+|.++-|-+.. .+....+. . +...|.++.+++..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 1123567777775432 2466677788877776532 22223332 2 3568999999999898
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE--EEEECCC------eEEEEECCCCeeEEEeecCCCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV--LTASKDQ------IIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L--atgs~Dg------~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
|++|+.... +++. .++....+++-.+-.+.-+. ++...|+ +..+|.+-+.+...........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 888775432 0000 00111222222221111111 1111121 1233333332222222234578
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|..+..|| ++.+||+...+|.|.+|++-.-.
T Consensus 232 i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 232 IFKMSLSP-DGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEECC-CCCEEEEEEcCCeEEEEecCcch
Confidence 99999999 89999999999999999996544
No 307
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.84 E-value=9.1e-07 Score=96.41 Aligned_cols=259 Identities=14% Similarity=0.223 Sum_probs=152.2
Q ss_pred ccCCCEEEEEE---------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 153 TPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 153 spdg~~Latgs---------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
|+|+++++... ..+.+.|||+++++....... ...+....|||+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777777642 346799999999765543333 67788999999999999876 57899998877754433
Q ss_pred eccC-----------------CCCeeEEEEecCCCEEEEEECC-C-----------------------------------
Q 005123 224 KSAH-----------------KESVRDLSFCRTDLKFCSCSDD-T----------------------------------- 250 (713)
Q Consensus 224 ~~~~-----------------~~~V~~l~fs~dg~~Las~s~D-g----------------------------------- 250 (713)
.... -+.-..+.||+|+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1223568899999998865332 1
Q ss_pred eEEEEEcCCCeeEE-E-E---ccCCCceEEEEEcCCCCEEEEEe--CCC---cEEEEECCCCceEEEEc-cCCCCe---E
Q 005123 251 TVKVWDFARCQEER-S-L---TGHGWDVKSVDWHPTKSLLVSGG--KDS---LVKLWDAKSGRELCSFH-GHKNMV---L 316 (713)
Q Consensus 251 ~I~iwDl~~~~~~~-~-l---~~h~~~V~sl~~spdg~~L~sgs--~Dg---~I~IwDl~t~~~~~~~~-~h~~~I---~ 316 (713)
.+.|+|+.+++... . . ......+..+.|.++++.|++.- .+. .|.++|..++++...+. ....+| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 14445555544321 1 1 12345688999999888444433 322 37777888766543332 223333 3
Q ss_pred EEEEc-CCCC-EEEEEECCCe--EEEEECCCCeeEEEeecCCCCeEE-EEEeCCCCCEEEEEECCC--cEEEEEcCCC-C
Q 005123 317 CVKWN-QNGN-WVLTASKDQI--IKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG--SIFHWLVGHE-T 388 (713)
Q Consensus 317 si~fs-pdg~-~Latgs~Dg~--I~IwDl~t~~~l~~~~~h~~~V~s-l~fsp~~~~~lasgs~DG--~I~Iwd~~~~-~ 388 (713)
.+.|. +++. +|.....||. |.++|...+. ...+....-.|+. +.|+.+++.+++++..+. .-.||.++.. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 55554 5554 4455556774 6666766555 3344444556744 677775566666776633 4455555444 4
Q ss_pred ceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 389 PQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
...+.+.........+.|++++.+++
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEE
Confidence 44555544443336999999997764
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.3e-09 Score=120.02 Aligned_cols=196 Identities=14% Similarity=0.213 Sum_probs=148.0
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~i 254 (713)
+..+.+..|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+.+.-+.||..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999998877665543 4678
Q ss_pred EEcCC-CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-c---cCCCCeEEEEEcCCCCEEEE
Q 005123 255 WDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 255 wDl~~-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~---~h~~~I~si~fspdg~~Lat 329 (713)
|++.+ +....++. .-.++.|+..-..-+.|+....+.|||+.++..+.++ . +....-+++.|||+.++|+
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99854 33344443 3568888876555566666677999999998876653 2 1223347789999988776
Q ss_pred EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.|| .+||++..+.++.|......+ .-.|+| ++.-++.-+ .|||+++..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecc-cccccC-CCceEEeec-----hhhhhHHHH
Confidence 455 589999888888887655333 345899 666666544 378887654
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3e-07 Score=95.99 Aligned_cols=253 Identities=13% Similarity=0.106 Sum_probs=151.9
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEE
Q 005123 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCS 245 (713)
Q Consensus 168 V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las 245 (713)
|++.+..+.+....+..+...|.+++|++..+ +|..++.+..|+|.|+++...+..+..+ ..+++++|..|+ .+|++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55666556666666777888999999999887 6788999999999999999998888776 889999998876 55777
Q ss_pred EECCCeEEEEEcCCCeeE-EEEcc--CCCceEEEEEc------CCCCEEEEEeCCCcEEEEECCC----CceEEEEccCC
Q 005123 246 CSDDTTVKVWDFARCQEE-RSLTG--HGWDVKSVDWH------PTKSLLVSGGKDSLVKLWDAKS----GRELCSFHGHK 312 (713)
Q Consensus 246 ~s~Dg~I~iwDl~~~~~~-~~l~~--h~~~V~sl~~s------pdg~~L~sgs~Dg~I~IwDl~t----~~~~~~~~~h~ 312 (713)
|..+|.|.|||++..+.. ..+.+ ....|..|+.- +.+.+|+..+. .+..|++.- .-++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CC
Confidence 888999999999764432 22221 22344444332 23445554443 255665542 11222222 23
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------eEEE-EECCCCeeEEEee-cC-CCC------eEEEEEeCCCCCEE-EEEEC
Q 005123 313 NMVLCVKWNQNGNWVLTASKDQ-------IIKL-YDIRAMKELESFR-GH-RKD------VTALAWHPFHEEYF-VSGSL 375 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs~Dg-------~I~I-wDl~t~~~l~~~~-~h-~~~------V~sl~fsp~~~~~l-asgs~ 375 (713)
+...++.+.+..+.++.....+ .|.. -|.+++..+...+ .+ .+. -..+.-.+ +.++| .++++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~-~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVE-DNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccc-cccEEEEecCC
Confidence 3444555555445555443321 1111 1223343332221 11 110 01111223 33444 45556
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC--CcEEEE-eCCcEEEEecCC
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--GYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~laS-~Dg~v~iWd~~~ 427 (713)
.+.+.+||..+......+.. +..|.+++.... +.+|+. .|..++||..+.
T Consensus 410 tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred cceeEEeccchhheeeeccc--CcceeecceeecCCcchhhheecceEEEEecCC
Confidence 67899999987765554433 477888876543 356665 999999997654
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.79 E-value=3.6e-07 Score=101.53 Aligned_cols=275 Identities=12% Similarity=0.124 Sum_probs=159.9
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
..|.--+++..+++|+.|++.|.|++|+-..+.....-. +..+.+..+..+.+..++|.|+..|.|.|+.++....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344555566778999999999999999987765443322 2445566677888888888999999999998775321
Q ss_pred --ee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 221 --KA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 221 --~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+. .-+.|+..|++++|+.|+..+++|...|+|.+-.+.... ....+....+.|.-|+.. ..+|++++. -.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl-~r 190 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL-TR 190 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh-hh
Confidence 11 113467899999999999999999999999998887621 122233345667777766 233443333 23
Q ss_pred EEEEECCCCceEEEEcc-CCC-CeEEEEEcCC----CCEEEEEECCCeEEEEECCC-CeeEEEeec-------------C
Q 005123 294 VKLWDAKSGRELCSFHG-HKN-MVLCVKWNQN----GNWVLTASKDQIIKLYDIRA-MKELESFRG-------------H 353 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~-h~~-~I~si~fspd----g~~Latgs~Dg~I~IwDl~t-~~~l~~~~~-------------h 353 (713)
..+++++..+....=+. .++ .-...+|-+. ..-+++++.-| .|+|..+- |+.+.+..- +
T Consensus 191 ~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~ 269 (726)
T KOG3621|consen 191 CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPI 269 (726)
T ss_pred hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccC
Confidence 44555553321111011 111 1233444442 33444455444 67776542 443333210 0
Q ss_pred CC----------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeC
Q 005123 354 RK----------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSND 417 (713)
Q Consensus 354 ~~----------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~D 417 (713)
.+ ....+.+- ++..+++-++-| |+|+|.++... .....-...|.+++.+.+..++...|
T Consensus 270 ~s~esp~~~~~~~~~q~ls~~k~~~l--~~~~vLa~te~G-iyv~d~~~~~v--~l~se~~~DI~dVs~~~neiFvL~~d 344 (726)
T KOG3621|consen 270 RSLESPNQRSLPSGTQHLSLSKSSTL--HSDRVLAWTEVG-IYVFDSNNSQV--YLWSEGGHDILDVSHCGNEIFVLNLD 344 (726)
T ss_pred CCcCCccccCCCCCccccccceeEEe--ecceEEEeecce-EEEEEeccceE--EEeecCCCceeEEeecCceEEEEecC
Confidence 00 01111111 233444444444 88888765442 22222345677777777777777777
Q ss_pred CcEEEEecCCC
Q 005123 418 HTTKFWCRNRP 428 (713)
Q Consensus 418 g~v~iWd~~~~ 428 (713)
+.+++..+...
T Consensus 345 ~~l~~~sv~s~ 355 (726)
T KOG3621|consen 345 RGLKVESVASR 355 (726)
T ss_pred CceeEEEeehh
Confidence 77777665443
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=1e-05 Score=84.13 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=161.2
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCc-EEEEEcCCCceeeeeccCCCCe--eEEEEecCCCEEEEEEC-----CCeEEEEEcC
Q 005123 188 AIRSMVWSH-NDNWMVSGDDGGA-IKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFA 258 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs~DG~-I~vwdl~~~~~~~~~~~~~~~V--~~l~fs~dg~~Las~s~-----Dg~I~iwDl~ 258 (713)
....++.+| +...++.+-+-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 4456666766664 6789999998877765443332 24679999999998744 5789999998
Q ss_pred -CCeeEEEEccCCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceEEEEc----cCCCCe
Q 005123 259 -RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMV 315 (713)
Q Consensus 259 -~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~------------------Dg~I~IwDl~t~~~~~~~~----~h~~~I 315 (713)
+.+.+.++..+.-.-..|.+.+|++.|+++.- +-+|.+.|.++|+.+.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 67778888888877888999999988887632 3347777888998877643 377789
Q ss_pred EEEEEcCCCCEEEEEECCC-------eEEEEECCCCeeEEEee-------cCCCCeEEEEEeCCCCCEE-EEEECCCcEE
Q 005123 316 LCVKWNQNGNWVLTASKDQ-------IIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEYF-VSGSLDGSIF 380 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg-------~I~IwDl~t~~~l~~~~-------~h~~~V~sl~fsp~~~~~l-asgs~DG~I~ 380 (713)
..+++..+|..++..-..+ .|.+++... .+..+. .-...|-+|+++. ++.++ +|+-..+.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEE
Confidence 9999999987666554433 244444332 232222 2346799999998 55544 5666677899
Q ss_pred EEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 381 Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+||..++..+... .-..+..++...+++++.+..|. +|.++....
T Consensus 243 ~~d~~tg~~~~~~---~l~D~cGva~~~~~f~~ssG~G~--~~~~~~~~~ 287 (305)
T PF07433_consen 243 VWDAATGRLLGSV---PLPDACGVAPTDDGFLVSSGQGQ--LIRLSPDGP 287 (305)
T ss_pred EEECCCCCEeecc---ccCceeeeeecCCceEEeCCCcc--EEEccCccc
Confidence 9999777633322 23457888888888554444444 555544333
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.1e-07 Score=101.59 Aligned_cols=182 Identities=23% Similarity=0.323 Sum_probs=134.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
...++|++++ +++|+.|..+|.|++++....- .+...|... ..+|.++++|+.||+|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567777775 6899999999999999876543 222233333 55899999999999999999988777766
Q ss_pred EccCCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCC--CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 266 LTGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 266 l~~h~~~V~sl~~spd-----g~~L~sgs~Dg~I~IwDl~t--~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
+. ....+.+|+++|+ .+.+++|+.-| +.++.-+= .+.-..+....+.|.+++| .|++||-++.+| |+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEE
Confidence 65 5578999999997 56899999888 77775331 1222245567789999999 588999998887 999
Q ss_pred EECCCCeeEEEeecCCCC------eEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 339 YDIRAMKELESFRGHRKD------VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~------V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
||+.+.+.+..+.-.... -..+.|.+ +..|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 999988887766533322 34677875 4556655444 89999887
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.1e-06 Score=99.43 Aligned_cols=207 Identities=12% Similarity=0.169 Sum_probs=143.5
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEEcCCC---c--
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMN---N-- 219 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~~---~-- 219 (713)
+|++.+..+|.|+.+|.|.+++-. .+.+..++.+... |..+....+.++|++.+.|+ .|+||+++.- +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467788899999999999998843 4555777777777 54444444447888777664 4899998643 1
Q ss_pred -ee---eeec----cCCCCeeEEEEecCCCEEEEEECCCeEEEEEc--C--CCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 220 -VK---ANKS----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--A--RCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 220 -~~---~~~~----~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl--~--~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+. +.+. .....+.+++++.+-+.+|+|-.||.|..+.- . .+............|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 22 1111 13457889999999999999999999999842 1 22222333345678999999998887444
Q ss_pred EeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEE
Q 005123 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTA 359 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~s 359 (713)
+..-..|.+|.+.... .+..+..|...+.|.++++...-|++++ +..|.+||....+....|. +|+.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4445679999988433 2455777888899999987555455554 4469999998777777776 66554443
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.75 E-value=3e-06 Score=96.38 Aligned_cols=271 Identities=9% Similarity=0.021 Sum_probs=162.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC------EE--EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccC
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA------IR--SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~------V~--sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~ 227 (713)
+..|++++.++.|+-+|..+++.+-.+...... +. .++.. ++..+++++.++.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 446777888899999999998877665443220 10 11111 2267888889999999999999988776543
Q ss_pred CCC-----ee-EEEEecCCCEEEEEE---------CCCeEEEEEcCCCeeEEEEccCCCc--------------------
Q 005123 228 KES-----VR-DLSFCRTDLKFCSCS---------DDTTVKVWDFARCQEERSLTGHGWD-------------------- 272 (713)
Q Consensus 228 ~~~-----V~-~l~fs~dg~~Las~s---------~Dg~I~iwDl~~~~~~~~l~~h~~~-------------------- 272 (713)
... +. ...+. + ..++.++ .++.|..+|.++++.+-.+......
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 12222 2 3444443 3678999999999887766532110
Q ss_pred e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceEEEEccCCCCe------EEEEEc----CC
Q 005123 273 V-KSVDWHPTKSLLVSGGKDS------------------LVKLWDAKSGRELCSFHGHKNMV------LCVKWN----QN 323 (713)
Q Consensus 273 V-~sl~~spdg~~L~sgs~Dg------------------~I~IwDl~t~~~~~~~~~h~~~I------~si~fs----pd 323 (713)
| .+.++++.+.++++++.|+ .|.-+|+++++.+.++......+ ....+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444567788887665 69999999999988765321111 111111 23
Q ss_pred CC---EEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE-----------------EECCCcEEEEE
Q 005123 324 GN---WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS-----------------GSLDGSIFHWL 383 (713)
Q Consensus 324 g~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las-----------------gs~DG~I~Iwd 383 (713)
+. .+++++.+|.+..+|.++++.+....... ..++.++ +.+++. ...+|.|.-.|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 43 67788899999999999999987765221 1122222 222221 12356787888
Q ss_pred cCCCCceEEEeccc-C------CCe--EEEEEcCCCcEEEEeCCcEEEEecCCCCCcccc
Q 005123 384 VGHETPQVEIHNVH-D------NTV--WDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 384 ~~~~~~~~~~~~~h-~------~~V--~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~~~ 434 (713)
+.+++.+.+..... . ... ..+....+-.++++.|+.|+.+|.+..+...+.
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 87776554443220 0 111 123344443444568999999988666555543
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1.2e-06 Score=88.48 Aligned_cols=197 Identities=8% Similarity=0.133 Sum_probs=119.0
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------cCCCEEEEEEccCC------CEEEEEeCCCcEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHND------NWMVSGDDGGAIKY 212 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------h~~~V~sl~~spdg------~~L~sgs~DG~I~v 212 (713)
.=+.++||+|+.+||.+...|+|+|||+...++ ..+.. -..+|..+.|.... ..|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 346789999999999999999999999876433 23221 23567777775532 24666677888877
Q ss_pred EEcCCC-----ceeee--e-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-
Q 005123 213 WQNNMN-----NVKAN--K-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS- 283 (713)
Q Consensus 213 wdl~~~-----~~~~~--~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~- 283 (713)
|-+..+ ..... + ......|+++.+++..++|++++.... +++. -++....+++-.+..+.-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 765322 12222 2 224668999999999888887765322 0000 001111222222211111
Q ss_pred -EEEEEeCCC------cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 284 -LLVSGGKDS------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 284 -~L~sgs~Dg------~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
..++...|. +..+|.+-+.+...........|..++.||||++||+...+|.|.+|++-+.+....+..+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 011111111 1233333332222222335678999999999999999999999999999988777666543
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=7.8e-08 Score=95.08 Aligned_cols=147 Identities=20% Similarity=0.328 Sum_probs=102.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeeEEEeecCC
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs-----~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.++.++++..||.+.+++.+.-..+ .++........+.++...+++|.++. .-+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4677999999999999998762211 11111111112222333445444432 23356777776544433333333
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEecCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd~~~ 427 (713)
..|++++-+|.-..++++|+.||.|.+||.+.......++.+|+.+|+.+-|+|.. .++|++||.+--||-+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45999999997778899999999999999999888888889999999999999765 67788999999998763
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=4.3e-08 Score=100.30 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=119.9
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEccCCCCeEEE
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCV 318 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-----~~~~~~~~h~~~I~si 318 (713)
++.+.+-.|-+-|++++... .|. ..+.|.++.|.-.+++++.|+.+|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 45556777888898876432 333 5678999999988999999999999999999864 2344444 88999998
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCee---EEEeecCCCCeEEEEE--eCCCCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 319 KWNQ-NGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRKDVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 319 ~fsp-dg~~Latgs~Dg~I~IwDl~t~~~---l~~~~~h~~~V~sl~f--sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
..-. ++.+|.+.+.+|+|++||++..++ +..+.+|...-.-+-+ ++ .+..|+++++|...+||.++++.....
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeec
Confidence 8766 788999999999999999998777 8888998765444433 34 567888999999999999987764433
Q ss_pred Eec---ccCCCeEEEEEc
Q 005123 393 IHN---VHDNTVWDLAWH 407 (713)
Q Consensus 393 ~~~---~h~~~V~~l~~s 407 (713)
+.. ..+..+.+++|+
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 321 123345566654
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.70 E-value=7.5e-06 Score=96.10 Aligned_cols=198 Identities=13% Similarity=0.208 Sum_probs=137.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc----CC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl----~~-- 259 (713)
+..|.++.|..+.+.|+.+..+|.|.+-|.++...... ......|.+++|++|+..++..+.+.+|.+-+. -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 46899999999999999999999999998877654332 345678999999999999999998888776432 00
Q ss_pred -----------------CeeEEEEccC---------------------CCceEEEEEcCCCCEEEEEe-----CCCcEEE
Q 005123 260 -----------------CQEERSLTGH---------------------GWDVKSVDWHPTKSLLVSGG-----KDSLVKL 296 (713)
Q Consensus 260 -----------------~~~~~~l~~h---------------------~~~V~sl~~spdg~~L~sgs-----~Dg~I~I 296 (713)
++....+.+. .+.=++|+|--||.++++.. ...+|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0111112211 11123599999999998843 2378999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeeEE----EeecCCCCeEEEEEeCCCCCE
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELE----SFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs---~Dg~I~IwDl~t~~~l~----~~~~h~~~V~sl~fsp~~~~~ 369 (713)
||.+ +..-..-....+.-.+++|-|.|.++++-. +|+.|.+|.-+ |-.-. .+......|..++|+. ++.+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC-CCCc
Confidence 9976 544333333445567899999999998753 45678888854 32222 2233334489999998 7888
Q ss_pred EEE---EECCCcEEEEEcCCC
Q 005123 370 FVS---GSLDGSIFHWLVGHE 387 (713)
Q Consensus 370 las---gs~DG~I~Iwd~~~~ 387 (713)
|++ ......|++|-+.+.
T Consensus 304 LAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeeecccccceEEEEEecCe
Confidence 877 444445999988654
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=3.2e-07 Score=104.09 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=143.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
++..++.|+....+..+|+.+.+..+........|+-++. ++++|++|...|+|.+-|.++.+.+.++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4566788888888999999998887777666666766665 67999999999999999999999999999999999988
Q ss_pred EEecCCCEEEEEEC---------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC---C
Q 005123 235 SFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK---S 301 (713)
Q Consensus 235 ~fs~dg~~Las~s~---------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~---t 301 (713)
.. .|+.|++|+. |..|+|||++..+.+.-+.-+.+. .-+.|+|. ...+++++..|.+.+.|.. +
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 77 6889999875 556899999877665554433332 45667773 4578888889999999943 3
Q ss_pred C-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 302 G-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 302 ~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
- ..+.-+......+..+++|++++.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 223344445566999999999999999999999999973
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.3e-07 Score=101.45 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=133.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|.++++|+.||+|.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567777776 6789999999999999976432 333344433 55899999999999999999888776665
Q ss_pred eccCCCCeeEEEEecC-----CCEEEEEECCCeEEEEEcC--CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 224 KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~d-----g~~Las~s~Dg~I~iwDl~--~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+ .....+.+++++|+ .+.+++|+.-| +.++.-+ ..+....+....+.|.+++|. |+++|-++.+| |+|
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 4 45778999999997 46789998888 7776532 111122455667899999998 88999988777 999
Q ss_pred EECCCCceEEEEccCCC------CeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~------~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
||+.+++.+..+..... .-..+.|.++. .|+.|-.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 99998887766653322 23457787554 46656544 68888887
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6e-07 Score=93.79 Aligned_cols=241 Identities=11% Similarity=0.110 Sum_probs=146.5
Q ss_pred eeCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+|..-|..++||+..+ +|..++.+.+|+|.|+++...+..+..+ ..+.+++|.-|. ++|+.|..+|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4667888999999999887 7888999999999999999998888887 889999998876 567788899999999988
Q ss_pred CCce-eeeecc--CCCCeeEEEE------ecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCC
Q 005123 217 MNNV-KANKSA--HKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 217 ~~~~-~~~~~~--~~~~V~~l~f------s~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~ 283 (713)
..+- +..+.+ ....|..|+. ...+.+|+..+.+ +..|++.-.. .+..+ +..+.+.++..++..+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence 6532 222211 2233333332 2234444444433 5566653211 11222 1234555666666445
Q ss_pred EEEEEeCC-C------cEEE-EECCCCceEEEEcc-C-CCC------eEEEEEcCCCCEEE-EEECCCeEEEEECCCCee
Q 005123 284 LLVSGGKD-S------LVKL-WDAKSGRELCSFHG-H-KNM------VLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 284 ~L~sgs~D-g------~I~I-wDl~t~~~~~~~~~-h-~~~------I~si~fspdg~~La-tgs~Dg~I~IwDl~t~~~ 346 (713)
.++..... - .|.. -|-++|..+...+. + .+. -..+.-.++.++|+ ++.+.+.+.+||..+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 55444332 1 0111 12233333322211 1 110 11122233455555 555677899999999999
Q ss_pred EEEeecCCCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcC
Q 005123 347 LESFRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~ 385 (713)
+.++.. +..|.+++....++ .+|++-. |..++||..+
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 988874 47788877655443 4555555 5588888654
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.67 E-value=1.1e-05 Score=91.62 Aligned_cols=229 Identities=10% Similarity=0.080 Sum_probs=145.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCC-----EE-EEEEccCCCEEEEEe---------CCCcEEEEEcCCCcee
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IR-SMVWSHNDNWMVSGD---------DGGAIKYWQNNMNNVK 221 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-----V~-sl~~spdg~~L~sgs---------~DG~I~vwdl~~~~~~ 221 (713)
..+++++.++.|+-+|.++++.+-.+...... |. +..+. +.++++++ .+|.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888889999999999999988776543321 11 12222 24555553 3678999999999887
Q ss_pred eeeccCCCC--------------------e-eEEEEecCCCEEEEEECCC------------------eEEEEEcCCCee
Q 005123 222 ANKSAHKES--------------------V-RDLSFCRTDLKFCSCSDDT------------------TVKVWDFARCQE 262 (713)
Q Consensus 222 ~~~~~~~~~--------------------V-~~l~fs~dg~~Las~s~Dg------------------~I~iwDl~~~~~ 262 (713)
..+...... | ...++...+..+++++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 765432110 1 1233444566777776554 799999999998
Q ss_pred EEEEccCCCce------EEEEEc----CCCC---EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 263 ERSLTGHGWDV------KSVDWH----PTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 263 ~~~l~~h~~~V------~sl~~s----pdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+-.+......+ ....+. -++. .+++++.+|.|..+|.++|+.+...... ...++.++ +.+++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 87764221111 001111 1333 6788889999999999999988765421 11223333 33333
Q ss_pred E------------------ECCCeEEEEECCCCeeEEEeecCC--------CCe--EEEEEeCCCCCEEEEEECCCcEEE
Q 005123 330 A------------------SKDQIIKLYDIRAMKELESFRGHR--------KDV--TALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 330 g------------------s~Dg~I~IwDl~t~~~l~~~~~h~--------~~V--~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
+ ..+|.|.-+|+++++.+.+..... ... ..+.. .+.+|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 236789999999999887765431 111 12222 4567888889999999
Q ss_pred EEcCCCCceEEEec
Q 005123 382 WLVGHETPQVEIHN 395 (713)
Q Consensus 382 wd~~~~~~~~~~~~ 395 (713)
+|.++++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99998887666543
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.2e-07 Score=96.81 Aligned_cols=209 Identities=11% Similarity=0.104 Sum_probs=153.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCC---CEEE-EEeCCCcEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHND---NWMV-SGDDGGAIK 211 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg---~~L~-sgs~DG~I~ 211 (713)
.+..|...|.+++.+-|+.++.+.+. |..++++|+++...+..++. -.+.+.++. + .| ..|+ +...++.|.
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-s-kGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-S-KGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-C-CCCeeeeEEeecccCCCcE
Confidence 35568888999999999999999777 99999999988766543332 222222221 2 22 1344 334678999
Q ss_pred EEEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC------CeeEEE---------EccCCCceE
Q 005123 212 YWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------CQEERS---------LTGHGWDVK 274 (713)
Q Consensus 212 vwdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~------~~~~~~---------l~~h~~~V~ 274 (713)
|+|-.... .......|...|..+.+++.+..+++....|.|..|..+. .+.... +........
T Consensus 126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 99865443 3444467899999999999999999999999999998762 111111 122345678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC---------------------------------CCCeEEEEEc
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---------------------------------KNMVLCVKWN 321 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---------------------------------~~~I~si~fs 321 (713)
++.|++++..+.+-+.|.+|+++++++++.++.+... ...-+.++|.
T Consensus 206 s~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 9999999999999999999999999999876554311 1124567888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
..+++|+.++-=| |+|.++.++++++.+
T Consensus 286 es~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 8999999998776 899999988877665
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1e-07 Score=97.54 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=122.4
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----eeEEEEccCCCceEEE
Q 005123 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSV 276 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----~~~~~l~~h~~~V~sl 276 (713)
++.+.+-.|-+-|++++..... ..++.|.++.|...+++++.|+.+|.|.++|++.. .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccccc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4455567788888888754432 25778999999998999999999999999999764 3344444 88999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCce---EEEEccCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 277 DWHP-TKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVK--WNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 277 ~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~--fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
.... ++.+|++.+.+|+|++||++--++ +..+++|-+.-.-+- ..+.+..|++++.|-..+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8877 788999999999999999997666 888888866544433 3456678888999999999999999998887
Q ss_pred ecCC----CCeEEEEEe
Q 005123 351 RGHR----KDVTALAWH 363 (713)
Q Consensus 351 ~~h~----~~V~sl~fs 363 (713)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 234555553
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=5.8e-05 Score=79.49 Aligned_cols=241 Identities=9% Similarity=0.081 Sum_probs=150.1
Q ss_pred EEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccCC-C------EEEEEEccCCCEEEEEeC--CCcE
Q 005123 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-A------IRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 150 v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~~-~------V~sl~~spdg~~L~sgs~--DG~I 210 (713)
+.+++|++.+++++ .+-.|.+||..+......+..-.+ . ...++++.|++++++... .-+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 56788888888753 245699999999887776543322 1 234578889998887643 4678
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEE----ccCCCc-eEEEEEcCCCCE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSL----TGHGWD-VKSVDWHPTKSL 284 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l----~~h~~~-V~sl~~spdg~~ 284 (713)
.|.|+..++.+..+..- .+. +.+-.....|.+.|.||++....+. .++...+. ...... +..-.+...+..
T Consensus 121 tVVDl~~~kvv~ei~~P--GC~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTP--GCW-LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTTTEEEEEEEGT--SEE-EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEECCCCceeeeecCC--CEE-EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 99999999887765321 122 2222233568888899999998886 44443222 111122 223344555666
Q ss_pred EEEEeCCCcEEEEECCCCceE--EEEccC------CC----CeEEEEEcCCCCEEEEEEC---CC-------eEEEEECC
Q 005123 285 LVSGGKDSLVKLWDAKSGREL--CSFHGH------KN----MVLCVKWNQNGNWVLTASK---DQ-------IIKLYDIR 342 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~--~~~~~h------~~----~I~si~fspdg~~Latgs~---Dg-------~I~IwDl~ 342 (713)
++..+.+|.|+-.|+...... ..+... .+ .-.-+++++..+.|++.-. ++ .|.+||+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 777888999999998765422 122111 11 1233677776555554322 11 59999999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEe
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~ 394 (713)
+.+.+..+.. ...+.+|..+.++.-+|++.+ .++.|.|||..+++....+.
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999988874 345779999986666776654 57899999999886555443
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=5.8e-06 Score=93.86 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=138.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC-eeEEEEecCCCEEEEEECCC-----eEEEEEcCCC------
Q 005123 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC------ 260 (713)
Q Consensus 193 ~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~------ 260 (713)
+|++.+..++.|+.+|.|.+++-. -..+..+..+... |..+....+.++|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 466778899999999998887532 2333556666666 55555555557788877765 4999999643
Q ss_pred eeE--EEEcc-----CCCceEEEEEcCCCCEEEEEeCCCcEEEEE--CCC--CceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 261 QEE--RSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWD--AKS--GRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 261 ~~~--~~l~~-----h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD--l~t--~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
.++ ..+.. ....+.+++++.+-+.+|+|-.||.|.++. +.. +.........+..|+.+.+..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 345688999999999999999999999984 221 2222223345678999999999887444
Q ss_pred EECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 330 ASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+.....|.+|.+.... .+..+..|...+.|..+++ ....|++++. ..|.+|+.+.......+..+|..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 4445579999998444 2555778888999999987 3443554443 37999998766666555545543
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.51 E-value=2.2e-05 Score=87.30 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=118.5
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
.+.........+.++|+++++++++ ||...|+.....+... .+...+++|.. .+.+|+-..+++|.|+.--+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 3444455678999999999999955 6788888743333222 24456788888 455777777889999743222
Q ss_pred eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 261 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
+....+.. ...+..|-. |.+|++.+. +.|.+||+.+++.++++... .|..+.|++++++++..+.+ .+.|++
T Consensus 100 ~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22223331 223444443 777777765 48999999999999998733 38999999999999988866 577877
Q ss_pred CCCC-----------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-
Q 005123 341 IRAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP- 408 (713)
Q Consensus 341 l~t~-----------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp- 408 (713)
.+.. ..+..+......|.+.+|.. + .|+-.+.. .|+.+ +......+.. -+..+.=+.+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkYl-~~Ge~~~i~~---ld~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKYL-VNGETGIIAH---LDKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEEE-ETTEEEEEEE----SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEEE-EcCCcceEEE---cCCceEEEEEEcc
Confidence 5532 03333333356788999974 2 44444444 77763 2222212222 245566666776
Q ss_pred -CCcEEEEeCCcEEEEecCC
Q 005123 409 -IGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 409 -dg~~laS~Dg~v~iWd~~~ 427 (713)
+..+++..|+.|..+.++.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTEEEEE-TT--EEEEE--H
T ss_pred CCEEEEEECCCCEEEEEECH
Confidence 3334444777777777643
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.49 E-value=0.00018 Score=79.57 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCceEEEEEcC-CCCEEEEE----eCCCc----EEEEECCCCceEE---EEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 270 GWDVKSVDWHP-TKSLLVSG----GKDSL----VKLWDAKSGRELC---SFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sg----s~Dg~----I~IwDl~t~~~~~---~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
+....++.|+- +...+.+. +.+|. -++|++...+.-+ +.....+.|.|++++++.+.|+.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777776 33444443 22343 4567765543211 1123677899999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 338 IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+||...+... +....-..+.++|+| ++.+|++|+..|.|.+||+.-..
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9998765333 223445678999999 89999999999999999996544
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.49 E-value=6.6e-08 Score=105.95 Aligned_cols=258 Identities=16% Similarity=0.244 Sum_probs=159.9
Q ss_pred CCCceEEEEEccCCC--EEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccC-CCEEEEEe----CCCcEEEE
Q 005123 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHN-DNWMVSGD----DGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spd-g~~L~sgs----~DG~I~vw 213 (713)
....+.|+++.-+.+ .+++|..+|.|.+-....... ......+....++++|++- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344678888776554 678899999999887654221 2344567788999999874 46677663 45789999
Q ss_pred EcCCC--c--eeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEE
Q 005123 214 QNNMN--N--VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 214 dl~~~--~--~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
|+.+. . ....+.. ......+++|..+.+++.+|...+.|.++|++.. .....+ ....+..+.++| ..++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 99876 1 1112222 4456678999999999999999999999999732 222222 334577788888 677776
Q ss_pred EEeCCCcEEEEE-CCCCce-EEEEccCC----CCeEEEEEcCCC-CEEEEEE-CCCeEEEEECCCC------e--eE---
Q 005123 287 SGGKDSLVKLWD-AKSGRE-LCSFHGHK----NMVLCVKWNQNG-NWVLTAS-KDQIIKLYDIRAM------K--EL--- 347 (713)
Q Consensus 287 sgs~Dg~I~IwD-l~t~~~-~~~~~~h~----~~I~si~fspdg-~~Latgs-~Dg~I~IwDl~t~------~--~l--- 347 (713)
+-. |+.|.+|| .++-+. +..+.... ..+..++|.|.. ..+++.. ..++|+++|+..- + ..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 655 89999999 443322 22222122 248899999942 3344444 4568999998521 0 11
Q ss_pred EE---eecCC--CCeEEEEEeCCC-CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 348 ES---FRGHR--KDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 348 ~~---~~~h~--~~V~sl~fsp~~-~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
.. ++... +.|.+..|++.+ -+..+++-.+-.+.-+++.. ++...|.++.+.|-|+-
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e-----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE-----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh-----heecccCCCcccchhhh
Confidence 11 22112 467788888744 23444454454555555422 23333444666666654
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=3.6e-05 Score=85.58 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=124.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
........+.++|+|+++++ +.||...||.....+.... +.-..++|.. .+.+|+-..++.|.|+.--..+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 34455789999999999988 5588899998554443322 2334678887 455777777889999743222221
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
..+.. ...+..|-. |..|+..+.+ .|.+||+.+++.++.+... .|..|.|++++++++..+++ .+.|++.+.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 22211 123444433 7777777655 8999999999999998743 38999999999999998865 577776543
Q ss_pred C-----------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 302 G-----------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~-----------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
. ..+..+......|.+.+|..| .|+..+.. .|+. +..|+ ..++..-+..+.-+...+ ..+.+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~-~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLP-KENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEET-TTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEc-cCCEE
Confidence 2 133444433567899999655 56655555 6665 33343 233333345667777776 56778
Q ss_pred EEEECCCcEEEEEcC
Q 005123 371 VSGSLDGSIFHWLVG 385 (713)
Q Consensus 371 asgs~DG~I~Iwd~~ 385 (713)
.....|+.|..+.++
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 888888888888764
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.48 E-value=2.7e-05 Score=87.92 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=139.4
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEE-------------------EccCCCEEEE-EeCCCcEEE
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMV-------------------WSHNDNWMVS-GDDGGAIKY 212 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~-------------------~spdg~~L~s-gs~DG~I~v 212 (713)
||++|++-.. +..|-..+++..++.+.+..- ...+..++ +++||+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7788888764 566777777776665554321 12222222 3445554432 233466777
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
+|.++.++...+.. ......++++++++++++++.+ .++...+..+...+..+... .+ .++..+|++..+
T Consensus 220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V- 293 (635)
T PRK02888 220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI- 293 (635)
T ss_pred EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE-
Confidence 88887776666543 3355678899999998887632 23333333322222222110 01 133457776666
Q ss_pred eCCCcEEEEECCC----CceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee------------EEEee
Q 005123 289 GKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------LESFR 351 (713)
Q Consensus 289 s~Dg~I~IwDl~t----~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~------------l~~~~ 351 (713)
.+++|.++|.++ +..+..+..-......+.++|||+++++++ .+.+|.|+|+.+.+. +.+..
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 333333333556688999999999988766 488999999987653 22333
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. ...-...+|.. +++.+.|...|..|..||+.+
T Consensus 373 v-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 2 23345677887 678888889999999999865
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.47 E-value=0.00023 Score=76.29 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=136.3
Q ss_pred EEEccCCCEEEEEEC-C--CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 150 VLWTPTGRRLITGSQ-S--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 150 v~~spdg~~Latgs~-d--g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
=+|..||++|+.++. | ..+++.|+.+++....-.+.........++++++.|+-...+..|+-.|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 367889987776655 4 5577778998876654443222233566778888887666667899999999887777666
Q ss_pred CCCCeeEEEEe--cCCCEEEEEEC----------------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC
Q 005123 227 HKESVRDLSFC--RTDLKFCSCSD----------------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 227 ~~~~V~~l~fs--~dg~~Las~s~----------------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg 282 (713)
....+-...|. .|+.+++..-. ...|...|+.+++....+. ....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 66666545553 45555543211 1346677888877655554 56788999999954
Q ss_pred -CEEEEEeC---CC-cEEEEECCC-CceEEEEccCC--CCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeeEEE
Q 005123 283 -SLLVSGGK---DS-LVKLWDAKS-GRELCSFHGHK--NMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELES 349 (713)
Q Consensus 283 -~~L~sgs~---Dg-~I~IwDl~t-~~~~~~~~~h~--~~I~si~fspdg~~Latgs-----~Dg~I~IwDl~t~~~l~~ 349 (713)
.+|+.|-+ |. .-+||-+++ +...+.+..+. ..+..=-|.+||+.|..-+ .+..|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 45555543 11 135564433 33344443332 2344446899998877533 244688888988765443
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCC----------------cEEEEEcCCCCceEEEecccC---------CC--eE
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDG----------------SIFHWLVGHETPQVEIHNVHD---------NT--VW 402 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG----------------~I~Iwd~~~~~~~~~~~~~h~---------~~--V~ 402 (713)
... .....+..++ +++++|.=+.|. .|+++++..+... .+..|. .. =-
T Consensus 280 ~~~--p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~--~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 280 MEM--PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR--KLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEE---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEE--EEEE-------BTTBSSTT--
T ss_pred EeC--CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee--eeeeccCcceeecCCCccCCC
Confidence 322 2334555556 677776544432 4556777544321 111121 11 13
Q ss_pred EEEEcCCCcEEE--E-eCCcEEEEecCCC
Q 005123 403 DLAWHPIGYLLC--S-NDHTTKFWCRNRP 428 (713)
Q Consensus 403 ~l~~spdg~~la--S-~Dg~v~iWd~~~~ 428 (713)
...|+||++.+. | .+|...||-++..
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 468999996663 4 6788888866443
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=5.8e-05 Score=85.29 Aligned_cols=260 Identities=11% Similarity=0.057 Sum_probs=152.1
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEeccC-------------CCEE-------EEEE--------c-----cCCCEEEEEe
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAHD-------------HAIR-------SMVW--------S-----HNDNWMVSGD 205 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h~-------------~~V~-------sl~~--------s-----pdg~~L~sgs 205 (713)
+.+|+..|.|+|+-+.+.+.++.+...+ ..|. .+.| | -||++|++-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5678888999999888877766543110 1111 1111 1 1667888776
Q ss_pred C-CCcEEEEEcCCCceeeeecc-CCCCeeEEE-------------------EecCCCEEEEE-ECCCeEEEEEcCCCeeE
Q 005123 206 D-GGAIKYWQNNMNNVKANKSA-HKESVRDLS-------------------FCRTDLKFCSC-SDDTTVKVWDFARCQEE 263 (713)
Q Consensus 206 ~-DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~-------------------fs~dg~~Las~-s~Dg~I~iwDl~~~~~~ 263 (713)
. +..|...+++..++...+.. ....+..+. +.+|++.+... -..+.+.++|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 45566666655443333211 111222222 23455444322 22456777888877666
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
..+.. ......++++++++++++.+.+. ++...+..+...+..+.-.. + ..+..+|++..+ .++.|.++
T Consensus 229 ~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 229 WQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred EEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEE
Confidence 66543 23556788999999998886432 23333333322222222100 0 133457887776 36789999
Q ss_pred ECCC----C-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce-----------EEEecccCCCeEE
Q 005123 340 DIRA----M-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-----------VEIHNVHDNTVWD 403 (713)
Q Consensus 340 Dl~t----~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~-----------~~~~~~h~~~V~~ 403 (713)
|.++ + +.+..+. -......++++|++..+++++..+.+|.|.|+.+.... ...... ...-..
T Consensus 302 D~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLH 379 (635)
T PRK02888 302 DGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLH 379 (635)
T ss_pred ECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcce
Confidence 9998 3 4444444 55677899999954455556666999999999775431 111111 223345
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.+|+.+|....| .|..|..|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 789999877766 899999999876
No 334
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.41 E-value=0.00032 Score=78.15 Aligned_cols=240 Identities=13% Similarity=0.112 Sum_probs=134.3
Q ss_pred ceEEEEEccCCCEEEEE-ECCC----cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC-----------c
Q 005123 146 SINRVLWTPTGRRLITG-SQSG----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-----------A 209 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg-s~dg----~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-----------~ 209 (713)
.+..+++|+|+++||.+ +..| .|+|+|+++++.+...... .....+.|.+|++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34568899999999866 3334 4999999999766532111 1122499999988877654333 3
Q ss_pred EEEEEcCCCcee--eeeccCCC-C-eeEEEEecCCCEEEEEEC---C-CeEEEEEcCCC----eeEEEEccCCCce-EEE
Q 005123 210 IKYWQNNMNNVK--ANKSAHKE-S-VRDLSFCRTDLKFCSCSD---D-TTVKVWDFARC----QEERSLTGHGWDV-KSV 276 (713)
Q Consensus 210 I~vwdl~~~~~~--~~~~~~~~-~-V~~l~fs~dg~~Las~s~---D-g~I~iwDl~~~----~~~~~l~~h~~~V-~sl 276 (713)
|++|++.+.... ..+..... . ...+..+.|+++|+..+. + ..|++.|+... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 777887766322 33333232 2 678889999999776443 2 35788888764 2333333333334 344
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEECCCCce---EEEEccCCC--CeEEEEEcCCCCEEEEE-ECCC--eEEEEECCCCe
Q 005123 277 DWHPTKSLLVSGGK---DSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTA-SKDQ--IIKLYDIRAMK 345 (713)
Q Consensus 277 ~~spdg~~L~sgs~---Dg~I~IwDl~t~~~---~~~~~~h~~--~I~si~fspdg~~Latg-s~Dg--~I~IwDl~t~~ 345 (713)
... .+.+++.... ++.|...++.+... ...+..+.. .+..+.. .+++|+.. ..++ .|+++|+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 3444444322 35677788887652 223444444 3444444 45555544 4444 68999998344
Q ss_pred eEEEeec-CCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCc
Q 005123 346 ELESFRG-HRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETP 389 (713)
Q Consensus 346 ~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~ 389 (713)
....+.. -.+.|..+........++++.+. -++|+.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444433 33446666655544555555444 24677888876654
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.41 E-value=5.7e-05 Score=82.90 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=124.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--------------------------e-----------------EEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--------------------------F-----------------EMIL 182 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--------------------------~-----------------~~~l 182 (713)
.|+++.|+.+..-|++|..+|.|.||.....+ + ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999998522110 0 0112
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--------cCCCCeeEEEEec-----CC---CEEEEE
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCR-----TD---LKFCSC 246 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~--------~~~~~V~~l~fs~-----dg---~~Las~ 246 (713)
....+.|++++.| |=-++++|..+|.+.|.|++...++.... .....|+++.|+- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999997 66799999999999999998877665421 1234688888862 22 358889
Q ss_pred ECCCeEEEEEcC--C-Cee----EEEEccCCCceEEEE-EcCCC--------------------CEEEEEeCCCcEEEEE
Q 005123 247 SDDTTVKVWDFA--R-CQE----ERSLTGHGWDVKSVD-WHPTK--------------------SLLVSGGKDSLVKLWD 298 (713)
Q Consensus 247 s~Dg~I~iwDl~--~-~~~----~~~l~~h~~~V~sl~-~spdg--------------------~~L~sgs~Dg~I~IwD 298 (713)
++.|.+.+|.+. . +.. ......+.+.|..|. ++.+. .-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 111 112223556666555 32221 1234444568899999
Q ss_pred CCCCceEEEEccCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWN-----QNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fs-----pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
.-+.+...+..........+++- ..+..|++-..+|.|++|.+-..+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 98888776655332333344452 35677888899999999999999988877754
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=0.00056 Score=72.18 Aligned_cols=255 Identities=11% Similarity=0.057 Sum_probs=157.3
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeccCC-------
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAHK------- 228 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~~~~~~~~~~~------- 228 (713)
+.|+|+|..+++.+-.+.. +-.-.+..++|++.+++++ +.-.|.+||..+-.....+..-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999988777764 2333467899999888643 34579999999886655443221
Q ss_pred CCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCce
Q 005123 229 ESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAK-SGRE 304 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~-t~~~ 304 (713)
.....+.++.|++++++... -.+|.|.|+...+.+.++.... |....| .++.|.+-|.||.+....+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 12345678889988877543 4579999999988888776332 222223 23468888899999999887 4555
Q ss_pred EEEE----ccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCee--EEEeecCC----------CCeEEEEEeCCCC
Q 005123 305 LCSF----HGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHR----------KDVTALAWHPFHE 367 (713)
Q Consensus 305 ~~~~----~~h~~-~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~--l~~~~~h~----------~~V~sl~fsp~~~ 367 (713)
..+. ...+. .+..-.++.++..++..+.+|.|+-.|+..... ...+..-. +.-.-+++++..+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 4322 11122 223445555666666678899999998875432 12222110 1123466776444
Q ss_pred CEEEEEE--C-----CC--cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EE-E-E-eCCcEEEEecCCC
Q 005123 368 EYFVSGS--L-----DG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LL-C-S-NDHTTKFWCRNRP 428 (713)
Q Consensus 368 ~~lasgs--~-----DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l-a-S-~Dg~v~iWd~~~~ 428 (713)
++++.-. . |+ .|.++|+.+.+.+.++... ..+.+|.++.+.. +| + + .++.+.|||....
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4444321 1 22 4777788777766666543 4588999998873 33 3 3 5789999998654
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=9.6e-06 Score=91.40 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=120.6
Q ss_pred EEEEEccCCCEEEEEEC----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 148 NRVLWTPTGRRLITGSQ----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+-++|+|..-++|+++. .|.|.||- ++++..+... -.-.++++||+|..-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34579999988888764 58888884 3343222111 122356799999988899999999999999988887777
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--ccCC--C--ceEEEEEcCCCC------EEEEEeCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHG--W--DVKSVDWHPTKS------LLVSGGKD 291 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~--~--~V~sl~~spdg~------~L~sgs~D 291 (713)
...|...|..+.||++|..++++..-|.|.+|.+.....+... -.|+ . ...|..+++++. ..++.+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 7889999999999999999999999999999987532222211 1121 1 234445555532 23344444
Q ss_pred CcEE-EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 292 SLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 292 g~I~-IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
..+. .++.+.....+... + .=.++|..|+.++.+|+|+-.|-.
T Consensus 177 ~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCC
Confidence 4443 33332111111111 0 113578888888899998888754
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.34 E-value=8.4e-05 Score=80.99 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=140.5
Q ss_pred ccCCCEEEEE---------eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 195 SHNDNWMVSG---------DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 195 spdg~~L~sg---------s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
|+|+++++.. +..+.+.|||+++++....... ...+....|||+++.|+... ++.|.++++.+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4677766653 2246789999999876655433 67899999999999998886 56899999877744332
Q ss_pred EccC-----------------CCceEEEEEcCCCCEEEEEeCCC------------------------------------
Q 005123 266 LTGH-----------------GWDVKSVDWHPTKSLLVSGGKDS------------------------------------ 292 (713)
Q Consensus 266 l~~h-----------------~~~V~sl~~spdg~~L~sgs~Dg------------------------------------ 292 (713)
-... -+.-..+-|+||+++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2111 12235788999999888764321
Q ss_pred cEEEEECCCCceEEE--E---ccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeec-CCCC---eE
Q 005123 293 LVKLWDAKSGRELCS--F---HGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-HRKD---VT 358 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~--~---~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~-h~~~---V~ 358 (713)
.|.|+|+++++.... . ......+..+.|+++++.|++...++ .+.++|..+++....+.. .... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 134456655543211 1 12345688899999988555443332 577788877654333321 2222 23
Q ss_pred EEEEe-CCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE-EEEcCCCcEE--EE-e--CCcEEEEecCCC
Q 005123 359 ALAWH-PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLL--CS-N--DHTTKFWCRNRP 428 (713)
Q Consensus 359 sl~fs-p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~l--aS-~--Dg~v~iWd~~~~ 428 (713)
.+.|. +++..+|.....||.-+||-++........+....-.|.. +.|+.++..| .+ . -..-.||.++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55554 6567777777788987777665555555555555566755 6778876444 22 2 346677777665
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=0.00055 Score=68.38 Aligned_cols=189 Identities=13% Similarity=0.005 Sum_probs=117.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
..+++.|+..+.+.-.|..+++.+-+... ...|.+-+.- -|++++.|+..|.+++.+.+++.....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 34677888888888888888876544322 2333333332 478899999999999999999977666544332222334
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCC
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN 313 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~ 313 (713)
...++..|..++.|++.+..|.++...+.+.+.......+-++.+-...|.++...|.|.--..+... .+.... ..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~ 179 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFG 179 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCC
Confidence 55688999999999999999999988888776555555555666633345555555665555544431 111111 112
Q ss_pred CeEE--EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 314 MVLC--VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 314 ~I~s--i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|.+ ++ -+..+..++-||.+.-+| ..++.+..+.
T Consensus 180 PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 180 PIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 2211 11 134455556666666666 4455555443
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=5.5e-05 Score=83.86 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=123.1
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE---eCC-CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG---DDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 168 V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg---s~D-G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
+.+-|.+ +.....+......+..-+|++++..++.. ... ..+.++++++++...... ....-..-+|++||++|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3444443 44455555556677788999999876633 222 358999999887655543 34445567899999887
Q ss_pred EEEE-CCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as~s-~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+.+. .|+ .|++.|+..+.. ..+....+.-..=.|+|||++|+..+.. | .|.++|++.... ..+......-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 7654 455 466778776653 3355444444477899999988887653 3 377778776554 333222232337
Q ss_pred EEEcCCCCEEEEEECC-Ce--EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 318 VKWNQNGNWVLTASKD-QI--IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 318 i~fspdg~~Latgs~D-g~--I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
-.||+||++|+..+.+ |. |.+.|+.++..+..+. .......-.|.+ +++.|+.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~-ng~~i~~ 386 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAP-NGRMIMF 386 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC-CCceEEE
Confidence 8899999999977643 43 7777776665433332 233333445666 4444443
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.32 E-value=0.00043 Score=72.42 Aligned_cols=220 Identities=12% Similarity=0.100 Sum_probs=131.0
Q ss_pred cCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---------
Q 005123 154 PTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--------- 223 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--------- 223 (713)
..++.|+.|+.+| |++|+... .+...... ...|..+...++-+.|++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 99999833 33333332 33399999998878777665 49999999876543331
Q ss_pred -----eccCCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCC-----eeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 224 -----KSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 224 -----~~~~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~-----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.......+..++ -...+...+++...++|.+|..... +..+++. ....+.+++|. ++.|++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111223344444 1123333333444558888887542 3445554 44789999999 6678888754
Q ss_pred CcEEEEECCCCceEEEEccCC------------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeE
Q 005123 292 SLVKLWDAKSGRELCSFHGHK------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT 358 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~------------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~ 358 (713)
...+.|+.++.....+.... ..+..+.++ ++++|++- |..-.+.|.. |+..+ ..-.+.....
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSSAPQ 232 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-CCcCcccEEEcCCchh
Confidence 48899999766544332111 223333443 45555543 3344444543 44433 2223555677
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
++++.. .+|++.+.+ .|.||++.++..
T Consensus 233 ~~~~~~---pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 233 SVAYSS---PYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred EEEEEC---CEEEEECCC-EEEEEECcCCcE
Confidence 777743 466665554 599999988754
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.32 E-value=0.00064 Score=77.88 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=119.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEE---E-------EEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIR---S-------MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~---s-------l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+.+|++++.++.|+-+|..+++.+-++.... ..+. + +++ .+..|++++.|+.|..+|.++++++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577778888889999999988776654321 1111 1 222 2456778888999999999999987765
Q ss_pred ccCCC----CeeEEEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCCC-----------------------
Q 005123 225 SAHKE----SVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGW----------------------- 271 (713)
Q Consensus 225 ~~~~~----~V~~l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~----------------------- 271 (713)
..... .+++--..-++ .+++++ .+|.|..+|.++++.+-.+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 12211111134 444443 268999999999988765432110
Q ss_pred --------ce-EEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCceEEEEccCCCC---------eEE
Q 005123 272 --------DV-KSVDWHPTKSLLVSGGKD-----S-----------LVKLWDAKSGRELCSFHGHKNM---------VLC 317 (713)
Q Consensus 272 --------~V-~sl~~spdg~~L~sgs~D-----g-----------~I~IwDl~t~~~~~~~~~h~~~---------I~s 317 (713)
.+ ..++++++.++|+.+..+ + .|.-.|+++|+....+...... ..-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 11 134666666667666522 2 5778899999988776542211 112
Q ss_pred EEEcCCCC---EEEEEECCCeEEEEECCCCeeE
Q 005123 318 VKWNQNGN---WVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 318 i~fspdg~---~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+.+..+|+ .|+.+.++|.++++|.++++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23334665 7789999999999999999876
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.32 E-value=0.00052 Score=70.43 Aligned_cols=200 Identities=10% Similarity=0.141 Sum_probs=116.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+.+.+-.+.|..|+|+++.+.| ++....+.|..++.+ ++.++.+... .+....|++.-++.++++.-+++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 45677777789999999986654 555667888888864 6777777654 36688999987777777666789999998
Q ss_pred cCCCc----e--eeee-----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---CeeEEE--E------ccCCCc
Q 005123 215 NNMNN----V--KANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERS--L------TGHGWD 272 (713)
Q Consensus 215 l~~~~----~--~~~~-----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---~~~~~~--l------~~h~~~ 272 (713)
+.... . ...+ ..++..+..|+|.+.++.|+++-+..-..||.+.. ...+.. . ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84321 1 1111 13456689999999988888887776666666643 111111 1 123456
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 273 VKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 273 V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
+.++++++. +.+++....+..|.++| .+|+.+..+.-.. ..--.|+|.++|++ ++.++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 889999995 55667777788899999 5677666553222 24678999999864 445566655554
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.31 E-value=1.8e-07 Score=102.61 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=135.8
Q ss_pred CCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCce--eeeeccCCCCeeEEEEecC-CCEEEEEE----CCCeEEEEE
Q 005123 186 DHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNV--KANKSAHKESVRDLSFCRT-DLKFCSCS----DDTTVKVWD 256 (713)
Q Consensus 186 ~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~~~~~--~~~~~~~~~~V~~l~fs~d-g~~Las~s----~Dg~I~iwD 256 (713)
...+.|+++..+.+ .+++|..+|.|.+-.+....- ......+...+++++|++- .+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44577887766544 677888999999987764422 3344567788999999874 45566653 356799999
Q ss_pred cCCCe----eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcC-CCCEEEE
Q 005123 257 FARCQ----EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLT 329 (713)
Q Consensus 257 l~~~~----~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fsp-dg~~Lat 329 (713)
+.+.- ....+.+ ......+++|..+.+++++|.....|.++|++.. .....+ ....+..+.++| ..+|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 98751 1122222 4456779999999999999999899999999832 222222 344567788888 7778776
Q ss_pred EECCCeEEEEE-CCCCeeEEEeecCC-----CCeEEEEEeCCCCCEEEEEECC-CcEEEEEcC
Q 005123 330 ASKDQIIKLYD-IRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSGSLD-GSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwD-l~t~~~l~~~~~h~-----~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd~~ 385 (713)
-. |+.|.+|| .++.+.......|. ..+..++|+|....++++.+.| ++|+.+|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 65 99999999 44444322222232 2489999999766677777765 579999884
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.31 E-value=0.002 Score=71.53 Aligned_cols=190 Identities=9% Similarity=0.113 Sum_probs=106.7
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc------eeeeeccCCCCeeEEEEecCC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------VKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~------~~~~~~~~~~~V~~l~fs~dg 240 (713)
.|+||+... +.+..+.-..+.|.++.|+.+ ..|++...||.++++|+.... .+.........+....+..+|
T Consensus 62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCC-CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 489998664 455555544589999999875 555566789999999986333 111111111222222333344
Q ss_pred CEEEEEECCCeEEEEEcCCCe-eEEEEccCCC---------ceEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW---------DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~---------~V~s-l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
++.-..++.|.+.+-.... ..+.+..... .+.. ..++.+....+....++.|.+.+....+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333345555444322211 1111110000 0001 22333444445555555555444332211 11
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEEEEEeC
Q 005123 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHP 364 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp 364 (713)
..+.+..+++|+++++||.-..+|.+.|.+.+-.+.+.++... ......+.|.-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 2467999999999999999999999999988766666666644 34567777764
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=7.8e-06 Score=92.10 Aligned_cols=255 Identities=15% Similarity=0.231 Sum_probs=146.3
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee--
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-- 224 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-- 224 (713)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|...|..+.||++|..|+++..-|.|.+|..+....+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999999999999999999999988888888889999999999999999999999999999987633222211
Q ss_pred ccC--CCCee--EEEEecCCC------EEEEEECCCeEE-EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 225 SAH--KESVR--DLSFCRTDL------KFCSCSDDTTVK-VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 225 ~~~--~~~V~--~l~fs~dg~------~Las~s~Dg~I~-iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
-.| ...++ |..++.++. ..++++++..+- .++.+.....+... + .=.++|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCce
Confidence 111 22233 333344421 133344443332 33322111111111 1 11357788888899999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC----------------CCCee-----------
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI----------------RAMKE----------- 346 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl----------------~t~~~----------- 346 (713)
|+-.|-. +++....+. ++. ..+-|.+-..-|++...+-++.++-+ +.|..
T Consensus 214 Vyyvdq~-g~~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 9888843 444333321 111 11112221111111111111111110 00000
Q ss_pred -E---EEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC-------CceEEEe--cccCCCeEEEEEcCCCcE
Q 005123 347 -L---ESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQVEIH--NVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 347 -l---~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~-------~~~~~~~--~~h~~~V~~l~~spdg~~ 412 (713)
+ ..+. .....+++++++. .+..|+.|...|++.+|.-... .....+. ....+.|+.|.|.+-...
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 0 0010 1245699999998 7888999999999999964222 1111111 123468999999985533
Q ss_pred E
Q 005123 413 L 413 (713)
Q Consensus 413 l 413 (713)
+
T Consensus 370 ~ 370 (1416)
T KOG3617|consen 370 A 370 (1416)
T ss_pred h
Confidence 3
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.28 E-value=5.2e-05 Score=84.03 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=126.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEE---CC-CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcE--
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGS---QS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAI-- 210 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs---~d-g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I-- 210 (713)
..+..-...+..-+|+++++.++..+ .. ..++++|+++++....+. ..+.-..-+|++||++|+ +...||..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 34555666788889999998877553 22 359999999887666655 344455679999998877 45566654
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
.+.|+.++.... +....+.-+.=.|++||++|+..++ .| .|.+.|.+.... ..+......-..-.|++||++|+.
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 555776666443 3333333446779999999887665 34 466677766554 333333333338889999999988
Q ss_pred EeCC-Cc--EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 288 GGKD-SL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 288 gs~D-g~--I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
.+.+ |. |.+.|+.++..++.+. .......-+|.++++.|...+.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 8753 43 7777877766544443 3444556678888887775543
No 348
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.25 E-value=0.00023 Score=83.45 Aligned_cols=304 Identities=16% Similarity=0.115 Sum_probs=156.4
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCc--EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE------CCCe--
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS------DDTT-- 251 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~--I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s------~Dg~-- 251 (713)
...+...+..+.|++++..++..+.++. ..+|.+.... .+..+...|....|++++..++... .|+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4446778889999999999997774332 3444333221 3344556777888888888776621 1222
Q ss_pred -----EEEEEcCCC-ee-----------EEEEccCCCceEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceEEE
Q 005123 252 -----VKVWDFARC-QE-----------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCS 307 (713)
Q Consensus 252 -----I~iwDl~~~-~~-----------~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~-------I~IwDl~t~~~~~~ 307 (713)
+.+|....+ +. ..........+....++.+++.++....+.. ..++...++ .+..
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 210 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELES 210 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEE
Confidence 334433222 11 1112223345666677766676666554432 333333233 3444
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEEEEEEC-C
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKD-Q-------IIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVSGSL-D 376 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~D-g-------~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~lasgs~-D 376 (713)
+......+..+.|..+++.++..+.. . .+.++|.+.++....+...+ .....+.+.-++..+++++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 44456668889999999866544322 2 34444522222222111111 111111111123444444444 6
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-e--CCcEEEEecCCCCCccccccccCCcccccccceEee
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-N--DHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 452 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (713)
|...++++................|..+++..+..++. + . -..+.+|+. +...+... .........
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~-~~~~~~~~~------ 360 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR---GEEAKLTS-SNNSGLKKV------ 360 (620)
T ss_pred CceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC---CCceEEee-ccccccccc------
Confidence 77888877655544555554456677777622222222 1 2 234555544 11111100 000000000
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcccCCC-CCCCCCCCCcccCCCCCCcccccCCCCCCCCC-CCCCCCCC
Q 005123 453 GRMPGNFPLPEGPTTPGPFAPGLTRNEG-TIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL-GAPPLPPG 520 (713)
Q Consensus 453 ~~~~~~~l~~~~~~rag~~~~glgr~~g-tv~Gy~~~~al~~~~~~~~~~~~~~~p~~~~~-g~p~~~~~ 520 (713)
..+.+-...+..++| +|+||-+. |.+++.++|||+.+.+ |||-..-+
T Consensus 361 -------------~~~~~e~~~~~~~dG~~i~~~l~~--------P~~~~~~k~yP~i~~~hGGP~~~~~ 409 (620)
T COG1506 361 -------------KLAEPEPVTYKSNDGETIHGWLYK--------PPGFDPRKKYPLIVYIHGGPSAQVG 409 (620)
T ss_pred -------------ccCCceEEEEEcCCCCEEEEEEec--------CCCCCCCCCCCEEEEeCCCCccccc
Confidence 011111111233334 99999998 9999999999999999 99976666
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.25 E-value=0.00081 Score=77.08 Aligned_cols=237 Identities=8% Similarity=0.042 Sum_probs=143.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEecc--C--CCEEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAH--D--HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~--~~V~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~ 225 (713)
+..|++++.|+.|.-+|.++++.+-..... . ..+++.-..-++ .|+++. .+|.|..+|.++++.+..+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 356888889999999999999887665431 1 112211111134 455443 26889999999998776543
Q ss_pred cCCC-------------------------------Ce-eEEEEecCCCEEEEEECC-----C-----------eEEEEEc
Q 005123 226 AHKE-------------------------------SV-RDLSFCRTDLKFCSCSDD-----T-----------TVKVWDF 257 (713)
Q Consensus 226 ~~~~-------------------------------~V-~~l~fs~dg~~Las~s~D-----g-----------~I~iwDl 257 (713)
.... .+ ..+++.++..+|+.+..+ + +|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 2111 11 123555555566655421 2 6778899
Q ss_pred CCCeeEEEEccCCCce---------EEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEc--c----------CC-
Q 005123 258 ARCQEERSLTGHGWDV---------KSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFH--G----------HK- 312 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V---------~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~--~----------h~- 312 (713)
++++.+-.+......+ .-+.+..+++ .++.+.++|.++++|.++++.+...+ . ..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 9998887765422222 2223334565 78899999999999999998762210 0 00
Q ss_pred -----------------CCe-----------EEEEEcCCCCEEEEEECC-------------------------------
Q 005123 313 -----------------NMV-----------LCVKWNQNGNWVLTASKD------------------------------- 333 (713)
Q Consensus 313 -----------------~~I-----------~si~fspdg~~Latgs~D------------------------------- 333 (713)
..+ ..++++|+..++++...+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000 114556655555443322
Q ss_pred --CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec
Q 005123 334 --QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (713)
Q Consensus 334 --g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~ 395 (713)
+.|.-+|+.+++.+..+........+.... .+.+++.++.||.++.+|.++++.+.+...
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888888877665332222222111 355777788899999999999987776654
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00048 Score=75.81 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=155.2
Q ss_pred ceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcee
Q 005123 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~ 221 (713)
.-..++++++++.++... .++.|.+.|..+.+.......-. .-..++++++++.++++.. ++.+.+.|..+++..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345778888888655544 45889999988777766665433 6678999999988887765 688999999888887
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEE-E---EccCCCceEEEEEcCCCCEEEEEeCC---Cc
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEER-S---LTGHGWDVKSVDWHPTKSLLVSGGKD---SL 293 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~-~---l~~h~~~V~sl~~spdg~~L~sgs~D---g~ 293 (713)
......... ..++++++++.++.+. .++.|.+.|.......+ . ...-...-..+.++++++++.+.... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 775443334 8999999999776665 78899999977655443 1 11123345688999999977666554 48
Q ss_pred EEEEECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeeEEEeecCCC---CeEEEEEeC
Q 005123 294 VKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRK---DVTALAWHP 364 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~-~I~si~fspdg~~Latgs~D-g~I~IwDl~t~~~l~~~~~h~~---~V~sl~fsp 364 (713)
+.+.|..++........-.. ....+.++|+|+++.+.... +.+.+.|..+.+....+..... .+..+++.+
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 99999998877665221122 56678999999999887544 8899999998877766554332 355555544
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.24 E-value=0.00053 Score=76.13 Aligned_cols=207 Identities=9% Similarity=0.089 Sum_probs=117.2
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe------eEEEEccCCCceEEEEEcCCC
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~------~~~~l~~h~~~V~sl~~spdg 282 (713)
.|.||+.... .+..+.-..+.|.++.|+.++ .|++...||+++++|+.... .+.........+..+.+..+|
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3677765433 333333333889999998754 56666789999999986333 011111111222233333344
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eEEEEcc----------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 283 SLLVSGGKDSLVKLWDAKSGR-ELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~----------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
+++-..++.|.+.+-.... ..+.+.. .........++.+....+....++.|.+.|-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333344555544322211 1111110 000000123444555555555555666444332211 11
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
..+.+..++.|| ++++||.-..+|.+.|.+.+-.+...+...........+.|..+..+++..+..|.+..
T Consensus 215 -~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 215 -SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred -CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 246799999999 89999999999999999876655555554444567789999998877777666777765
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=5e-05 Score=84.92 Aligned_cols=154 Identities=11% Similarity=0.202 Sum_probs=106.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-- 262 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-- 262 (713)
...|.--+++..+++|+.|+..|.|++|+-..+....... +....+..++++.++.++|+++..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344444566678999999999999999987776554433 2445566677888888899999999999998865322
Q ss_pred ---EEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 263 ---ERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 263 ---~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~----~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
+... +.|...|++++|++++..|++|...|+|.+-.+++. -....+....+.|..|.+. + .+|++++.-+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q-~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q-SYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-c-ceehHhhhhh
Confidence 1111 236789999999999999999999999999888762 1123333456778777764 2 3444444333
Q ss_pred eEEEEECC
Q 005123 335 IIKLYDIR 342 (713)
Q Consensus 335 ~I~IwDl~ 342 (713)
..+++.+
T Consensus 191 -~~Lc~tE 197 (726)
T KOG3621|consen 191 -CILCQTE 197 (726)
T ss_pred -hheeecc
Confidence 3445554
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.20 E-value=0.00045 Score=75.93 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=134.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------------------------------------eee
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------------------------------------ANK 224 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~-------------------------------------------~~~ 224 (713)
.|+++.|+.+..-|+++...|.|.||.+..++.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999999899999999999999864322110 001
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--cc------CCCceEEEEEcC-----CC---CEEEEE
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TG------HGWDVKSVDWHP-----TK---SLLVSG 288 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~------h~~~V~sl~~sp-----dg---~~L~sg 288 (713)
....+.|++++.| |--++++|..+|++.|.|++....+..- .. ....|+++.|.- |+ -+|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2235778888887 5568999999999999999877766542 11 234688888863 33 378899
Q ss_pred eCCCcEEEEECC--C-CceE----EEEccCCCCeEEEE-EcCC--------------------CCEEEEEECCCeEEEEE
Q 005123 289 GKDSLVKLWDAK--S-GREL----CSFHGHKNMVLCVK-WNQN--------------------GNWVLTASKDQIIKLYD 340 (713)
Q Consensus 289 s~Dg~I~IwDl~--t-~~~~----~~~~~h~~~I~si~-fspd--------------------g~~Latgs~Dg~I~IwD 340 (713)
+..|.+.+|.+. . +... .....+.+.|..|. |+.+ -.-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999774 1 2211 11223556665554 3221 02244455577899999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEe----CCCCCEEEEEECCCcEEEEEcCCCCceEEEecc---cCCCeEEEEEcCCCcEE
Q 005123 341 IRAMKELESFRGHRKDVTALAWH----PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 341 l~t~~~l~~~~~h~~~V~sl~fs----p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~l 413 (713)
.-+.+..+...........+.+- ...+..|++-..+|.|++|.+-.-+.+...... ....+...+++.+|.++
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887765554222223334442 125678899999999999999776555444321 12334566778888766
Q ss_pred EE-eCCcEEEEec
Q 005123 414 CS-NDHTTKFWCR 425 (713)
Q Consensus 414 aS-~Dg~v~iWd~ 425 (713)
.- ....+.+|.+
T Consensus 322 ~~~gpsE~~l~sv 334 (395)
T PF08596_consen 322 YWTGPSEIQLFSV 334 (395)
T ss_dssp EE-SSSEEEEEEE
T ss_pred EEeCcccEEEEEE
Confidence 43 5556555554
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0018 Score=71.39 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=168.0
Q ss_pred ceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceee
Q 005123 146 SINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~ 222 (713)
....+.+.+++..+++... ...+.+.+.. ....... ..-...-..++.+++++.++ +...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566777788855554432 2245555544 2222221 11113345778888887555 44456899999988777766
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwD 298 (713)
..... ..-..++++++++.+.++.. ++++.+.|..+.+.+.....-... ..++++++++.++++. .++.|.++|
T Consensus 111 ~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 65332 36788999999988777765 689999999888887775543334 8999999999766665 688999999
Q ss_pred CCCCceEE-E---EccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCC-CeEEEEEeCCCCCEE
Q 005123 299 AKSGRELC-S---FHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYF 370 (713)
Q Consensus 299 l~t~~~~~-~---~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~-~V~sl~fsp~~~~~l 370 (713)
..+..... . ...-...-..+.++++++++.+.... +.+.+.|..++........-.. ....+.++| ++..+
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAA 267 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEE
Confidence 77655442 1 11122344678899999977766544 5899999998877665221222 456788899 56665
Q ss_pred EEE-ECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCC
Q 005123 371 VSG-SLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG 410 (713)
Q Consensus 371 asg-s~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg 410 (713)
.+. +..+.+.+.|..+.......... -...+..+++.+..
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 555 44578999988665544333221 11235555555443
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.17 E-value=0.0007 Score=69.47 Aligned_cols=198 Identities=10% Similarity=0.187 Sum_probs=115.2
Q ss_pred EEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccC-CCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~-~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+.+-...++.|+|.++.+ ++++....+.|..++.+ ++++..+... .....+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999866 55566777888888864 6666665433 4678899998888766666568999999983
Q ss_pred CCe----e--EEEEc-----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceEEEE--------ccCCCCeE
Q 005123 259 RCQ----E--ERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSF--------HGHKNMVL 316 (713)
Q Consensus 259 ~~~----~--~~~l~-----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---~~~~~~~--------~~h~~~I~ 316 (713)
... . ...+. .+...+..|+|++.++.|+++-+..-..||.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 11121 2445689999999888888887776677776653 2222111 11334588
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 317 CVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 317 si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
++++++. +.+++....+..|.++| .+|+.+..+.... ..--.|+|.+ ++++++ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEE-EcCCceEEEe
Confidence 9999995 56666777888999999 5677766654333 2467899988 565444 4455555554
No 356
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.17 E-value=5.8e-06 Score=58.94 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=36.2
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+++.++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57789999999999999999999999999999999997
No 357
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=5.9e-06 Score=58.92 Aligned_cols=39 Identities=28% Similarity=0.739 Sum_probs=36.7
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
++++.++.+|...|++|+|++++++|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999998
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.16 E-value=0.0021 Score=71.61 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=131.9
Q ss_pred EEEEEEccCCCEEEEE-eCCC----cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-----------eE
Q 005123 189 IRSMVWSHNDNWMVSG-DDGG----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----------TV 252 (713)
Q Consensus 189 V~sl~~spdg~~L~sg-s~DG----~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----------~I 252 (713)
+..+++++|+++||.+ +..| .|+|+|+++++.+..... ......+.|..+++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998855 4444 599999999976653211 11223499999988877665433 38
Q ss_pred EEEEcCCCeeE--EEEccCCCc--eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceEEEEccCCCCe-EEEE
Q 005123 253 KVWDFARCQEE--RSLTGHGWD--VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG----RELCSFHGHKNMV-LCVK 319 (713)
Q Consensus 253 ~iwDl~~~~~~--~~l~~h~~~--V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~----~~~~~~~~h~~~I-~si~ 319 (713)
+.|++.+.... ..+...... ...+..+.|+++|++.+.. ..|.+.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888765432 444433332 6788999999987765432 34788898875 2333333333333 3444
Q ss_pred EcCCCCEEEEEE---CCCeEEEEECCCCee---EEEeecCCC--CeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCc
Q 005123 320 WNQNGNWVLTAS---KDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (713)
Q Consensus 320 fspdg~~Latgs---~Dg~I~IwDl~t~~~---l~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~ 389 (713)
.. ++.+++... .++.|...++.+... ...+..+.. .+..+... ++.+++....++ .|+++++..+..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence 43 444444443 345787888876652 224445555 35555543 456667766666 478888872333
Q ss_pred eEEEecccCCCeEEEEEcCCCc--EE-E-E--eCCcEEEEecCCC
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGY--LL-C-S--NDHTTKFWCRNRP 428 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~--~l-a-S--~Dg~v~iWd~~~~ 428 (713)
...+...-.+.|..+....+.. ++ . | .-.++..||+...
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 3333333345566665555442 22 2 2 3455555555443
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0005 Score=73.86 Aligned_cols=211 Identities=15% Similarity=0.216 Sum_probs=126.2
Q ss_pred CcEEEEeCCCCceEEEEecc-CCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEEcCCC-----ceee
Q 005123 166 GEFTLWNGQSFNFEMILQAH-DHAIRSMV---WSHN----DNWMVSGDD----------GGAIKYWQNNMN-----NVKA 222 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h-~~~V~sl~---~spd----g~~L~sgs~----------DG~I~vwdl~~~-----~~~~ 222 (713)
..|+|.|..+.+.+..+... ...+.+++ +..+ ..+|++|.. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998888877766543 33455443 3322 467776642 288999999884 2211
Q ss_pred -eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 223 -NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 223 -~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
......+.|++++-. ++ +|+++. ++.|.+|++...+ ....- ......+.++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 113456789888876 33 454444 5789999997776 33222 2233467777766 669999998888887754
Q ss_pred CC-CceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--e--eEEEeecCCCCeEEE---EE
Q 005123 300 KS-GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------M--K--ELESFRGHRKDVTAL---AW 362 (713)
Q Consensus 300 ~t-~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-------~--~--~l~~~~~h~~~V~sl---~f 362 (713)
+. .+.+..+ .....+++++.|-.+++.++++..+|.|.++.... + + .+..+. ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 43 2323333 22456688999886667999999999999998762 1 1 222332 33556766 43
Q ss_pred eCC--CC-----CEEEEEECCCcEEEE
Q 005123 363 HPF--HE-----EYFVSGSLDGSIFHW 382 (713)
Q Consensus 363 sp~--~~-----~~lasgs~DG~I~Iw 382 (713)
.+. +. ..++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 331 12 247788888888743
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.0011 Score=70.27 Aligned_cols=219 Identities=11% Similarity=0.085 Sum_probs=138.2
Q ss_pred EEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc--
Q 005123 150 VLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-- 226 (713)
Q Consensus 150 v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~-- 226 (713)
-.|.++...|+ +--..+.|.-||..+++.. .+. +.+.+.++....++..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35667766444 4445788899988765433 222 3344556665555566665543 356666665554222211
Q ss_pred ---CCCCeeEEEEecCCCEEEEEEC-----------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 227 ---HKESVRDLSFCRTDLKFCSCSD-----------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 227 ---~~~~V~~l~fs~dg~~Las~s~-----------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
.....+++.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1245678888899887766544 133444443 455666666556677899999999888877654
Q ss_pred CcEEEEECCC--C----ce-EEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 292 SLVKLWDAKS--G----RE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 292 g~I~IwDl~t--~----~~-~~~~~~h~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+.|.-|++.. + +. ...+....+..-.++...+|++.+++..+| .|.+|+.+ ++.+..++.....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 6788887752 1 11 122223445666778888898876555554 89999998 99999999887889999996
Q ss_pred CCCCCE-EEEEE
Q 005123 364 PFHEEY-FVSGS 374 (713)
Q Consensus 364 p~~~~~-lasgs 374 (713)
-.+.+. ++++.
T Consensus 264 G~~~~~L~iTs~ 275 (307)
T COG3386 264 GPDLNTLYITSA 275 (307)
T ss_pred CCCcCEEEEEec
Confidence 433344 44443
No 361
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.09 E-value=0.0014 Score=72.80 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=83.4
Q ss_pred CCCEEEEEEccCC-CEEEEE----eCCCcE----EEEEcCCCceee---eeccCCCCeeEEEEecCCCEEEEEECCCeEE
Q 005123 186 DHAIRSMVWSHND-NWMVSG----DDGGAI----KYWQNNMNNVKA---NKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (713)
Q Consensus 186 ~~~V~sl~~spdg-~~L~sg----s~DG~I----~vwdl~~~~~~~---~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~ 253 (713)
+....++.|+... ..+.+. +.+|.+ .+|++..++... +.......|.+++++++++.|+.|+.||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3444677787633 344432 344443 456665554322 2234677899999999999999999999999
Q ss_pred EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005123 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~ 302 (713)
+||..++..... ...-..+.++|+|+|..|++|+..|.|.+||+.-.
T Consensus 285 LyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999877643322 34566889999999999999999999999998754
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.09 E-value=0.00044 Score=81.01 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=98.8
Q ss_pred CEEEEE-eCCCcEEEEEcCCCceeeeeccCCCC-eeEEEEec-----CCCEEEEEECCCeEEEEEcCCCe--eEEE---E
Q 005123 199 NWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQ--EERS---L 266 (713)
Q Consensus 199 ~~L~sg-s~DG~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~--~~~~---l 266 (713)
+.|+.. .....|+-.|++.++++..+..+... |.+++-.. +....++|-.++.|..||.+-.. .+.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 35578999999999999998877654 55554321 12345677778899999987532 2211 1
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
........|++-+.+| +||+|+.+|.||+||--..+....+.+....|..|+.+.||+||++.+ +..|.|+|+
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234567888877666 699999999999999543333334556788999999999999998776 456777775
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.06 E-value=0.0026 Score=66.50 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=125.3
Q ss_pred cCCCEEEEEeCCCcEEEEEcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE---------
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--------- 265 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~--------- 265 (713)
..++.|++|+++| |.++++.. .+..... ....|..+...++-+.|++-+ |+.|+++|+........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 88888832 2222222 233499999998877777665 59999999865433221
Q ss_pred -----EccCCCceEEEE--EcCCC-CEEEEEeCCCcEEEEECCCC-----ceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 266 -----LTGHGWDVKSVD--WHPTK-SLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 266 -----l~~h~~~V~sl~--~spdg-~~L~sgs~Dg~I~IwDl~t~-----~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
.......+..++ -...+ ..|+++ ...+|.||..... +..+++. ....+.+++|. ++.|++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111223344444 11233 344444 4468888877652 3445554 45778999997 667888875
Q ss_pred CCeEEEEECCCCeeEEEeecCC------------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCC
Q 005123 333 DQIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~~h~------------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~ 400 (713)
++ ..+.|+.++.....+.... ..+..+... ++.+|++. |..-.+.|. .+.........-...
T Consensus 157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence 54 8888998766544332111 234444443 34555543 323333343 232221111111335
Q ss_pred eEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 401 VWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 401 V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
..++++... .+++-.++.|.||++...
T Consensus 231 p~~~~~~~p-yli~~~~~~iEV~~~~~~ 257 (275)
T PF00780_consen 231 PQSVAYSSP-YLIAFSSNSIEVRSLETG 257 (275)
T ss_pred hhEEEEECC-EEEEECCCEEEEEECcCC
Confidence 666666443 444557778999999665
No 364
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.04 E-value=0.016 Score=67.67 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=120.4
Q ss_pred eEEEEEcCCCeeEEEEccC----CCceEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceEEEEcc--CCC
Q 005123 251 TVKVWDFARCQEERSLTGH----GWDVKSVDWHPT-KSLLVSGGK----------DSLVKLWDAKSGRELCSFHG--HKN 313 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spd-g~~L~sgs~----------Dg~I~IwDl~t~~~~~~~~~--h~~ 313 (713)
.++++|-++.+.+...... ...|.++.|..| +.++++|+. .|.|.||.....+.+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3666666665544332211 124556668877 667777753 57788887766444433322 233
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--ceE
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQV 391 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--~~~ 391 (713)
.+.++..- +|++||. -+..|++|++.+.+.++.-..+...+..+...- .++.|++|..-++|.+...+..+ -..
T Consensus 831 av~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred ceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence 44444321 5666654 456899999999888887778888888888887 78999999998888777665444 233
Q ss_pred EEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCcccc
Q 005123 392 EIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~~~~ 434 (713)
.....+....+++.+-.+..++.+ +++.+.+-.++.......+
T Consensus 907 vArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~e 950 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEE 950 (1096)
T ss_pred eehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhh
Confidence 334456778899999888888876 8899998888765554433
No 365
>PRK10115 protease 2; Provisional
Probab=97.98 E-value=0.0059 Score=72.34 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred CCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC------CeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVW 255 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~-----DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D------g~I~iw 255 (713)
-.+..+.|++|+++|+.+.. .-.|++.|+.+++.+....... -..++|++|++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998886532 2358888998876432221111 1469999999877665442 368888
Q ss_pred EcCCC--eeEEEEccCCCceE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 256 DFARC--QEERSLTGHGWDVK-SVDWHPTKSLLVSGGK---DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 256 Dl~~~--~~~~~l~~h~~~V~-sl~~spdg~~L~sgs~---Dg~I~IwDl~--t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
++.+. +....+........ .+..+.++++++..+. ++.+.+|+.. +++....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33444443333333 3344447777665543 3568888853 3332222222222222222 2233333
Q ss_pred EEEECC---CeEEEEECCCCeeEEEeecC-C-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKD---QIIKLYDIRAMKELESFRGH-R-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~D---g~I~IwDl~t~~~l~~~~~h-~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+....+ ..|...++.+......+..+ . ..|..+.++ .+.++++...+|.-+++-++.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcC
Confidence 333222 24544555522222333334 2 368888887 457778888888766665543
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.97 E-value=0.0063 Score=65.55 Aligned_cols=239 Identities=11% Similarity=0.058 Sum_probs=119.5
Q ss_pred eCCCCceEEEEeccCCCEEEE-----EEccCCCEEEE-EeCCC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 172 NGQSFNFEMILQAHDHAIRSM-----VWSHNDNWMVS-GDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 172 d~~t~~~~~~l~~h~~~V~sl-----~~spdg~~L~s-gs~DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
|-.|+..+..+.........+ +|..||+.|+. +..|| .+.+.|+.+++................++++++.|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777777776544433333 56778876665 44455 46666888888776655433334456777888888
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc--CCCCEEEEEeC----------------------CCcEEEEEC
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH--PTKSLLVSGGK----------------------DSLVKLWDA 299 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~----------------------Dg~I~IwDl 299 (713)
+-...+..|+..|+++.+....+......+-...|. .|+..++-.-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 777777899999999988777776666666555653 45555433211 233666788
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCC-EEEEEEC------CCeEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEE
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGN-WVLTASK------DQIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYF 370 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~-~Latgs~------Dg~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~l 370 (713)
++|+....+. ...++..+.|||... +|+.|-+ |..|.+.|.+ +..++.+..+. ..+..=-|.+++..++
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877655554 677899999999544 4444432 2234444443 33344443332 2344556888544444
Q ss_pred EEEE-C---CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 371 VSGS-L---DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 371 asgs-~---DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
..+. . +..|.-+|..+..... +. .......+-.++|+.++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEe
Confidence 4333 2 3346666776654322 11 1224556677889999876
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.92 E-value=0.0011 Score=76.69 Aligned_cols=181 Identities=10% Similarity=0.107 Sum_probs=106.1
Q ss_pred CCeeEEEEecCCCEEEEEE------CCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---------
Q 005123 229 ESVRDLSFCRTDLKFCSCS------DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------- 291 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s------~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------- 291 (713)
..+.+.++++|++.++... .|. .|.+++... .. ..+.. ....+.-.|+++++.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887665 243 556656532 22 33322 2348899999998888777543
Q ss_pred ---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCCCe-eE---EEee-cCCCCeEEE
Q 005123 292 ---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL---YDIRAMK-EL---ESFR-GHRKDVTAL 360 (713)
Q Consensus 292 ---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I---wDl~t~~-~l---~~~~-~h~~~V~sl 360 (713)
+.|.+.+++.++... .....|..+.||+||+.|+... ++.|+| -....++ .+ ..+. .....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443332222 2356799999999999998776 477777 4434443 11 1122 223346889
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEEeCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSNDH 418 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS~Dg 418 (713)
.|.. ++.++ ++..++...+|.+.-.......... ....+.+|+-+++..++...++
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 9998 55544 5555665566666443333222222 2456777777765444333444
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0027 Score=68.20 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=120.7
Q ss_pred CcEEEEEcCCCceeeeecc-CCCCeeEEEEe---cC----CCEEEEEEC----------CCeEEEEEcCCC----eeEEE
Q 005123 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC---RT----DLKFCSCSD----------DTTVKVWDFARC----QEERS 265 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs---~d----g~~Las~s~----------Dg~I~iwDl~~~----~~~~~ 265 (713)
..|+|.|..+.+.+..+.- ..+.+++++.. .+ ..+|++|+. .|.|.++++.+. ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577888777766554432 23344544432 22 466776643 288999999884 12222
Q ss_pred E--ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 266 L--TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 266 l--~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
+ ....+.|++|+-. +.+|+++. ++.|.+|++...+ .+..- ......++++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2356789998877 34455554 4889999998877 33322 2233356666654 669999998888888754
Q ss_pred CC-CeeEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC-------C-ceEEEecc-cCCCeEEE---EE
Q 005123 342 RA-MKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T-PQVEIHNV-HDNTVWDL---AW 406 (713)
Q Consensus 342 ~t-~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~-------~-~~~~~~~~-h~~~V~~l---~~ 406 (713)
+. .+.+..+. .....++++.|-.++ +.++++..+|.|.++..... . .......- ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43 33233332 234568899988534 69999999999999988531 1 22222222 24567777 44
Q ss_pred cCC----C------cEEEEeCCcEEEE
Q 005123 407 HPI----G------YLLCSNDHTTKFW 423 (713)
Q Consensus 407 spd----g------~~laS~Dg~v~iW 423 (713)
.+. . .+.++.+|.|-+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 441 1 3335688888844
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.91 E-value=0.0047 Score=67.86 Aligned_cols=89 Identities=13% Similarity=0.292 Sum_probs=60.0
Q ss_pred EEEEccCCCEEEEEECCCcEEE---EeCCC-----CceEEEEec---cC--CCEEEEEEcc-----------CCCEEEEE
Q 005123 149 RVLWTPTGRRLITGSQSGEFTL---WNGQS-----FNFEMILQA---HD--HAIRSMVWSH-----------NDNWMVSG 204 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~I---wd~~t-----~~~~~~l~~---h~--~~V~sl~~sp-----------dg~~L~sg 204 (713)
+++.+++++.||.+..+..|.+ |+... ........+ ++ ..|+++.|-+ |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988877666 64311 112222211 12 4677777643 45788999
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec
Q 005123 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~ 238 (713)
..+|.|++|.. ++.++.....|.+.|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999975 5556555567788888887743
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.90 E-value=0.049 Score=57.57 Aligned_cols=270 Identities=8% Similarity=0.078 Sum_probs=122.5
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--ecc---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h---~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
-...+.+|.|..+..-+|+| ..+.|.. ..+.++.-... ... .-...+|.|.. .+.+++ +..+. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCce-EEEecCC
Confidence 34478999999555555555 4554322 22222221111 111 12356777753 344444 44453 3333344
Q ss_pred Cceeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
++.-..+. ........+....++ .+..++..|.|+.=. +.++. ..........+..+..++|+++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 43322221 122333444444444 333344455443321 22222 2223445577889999999998888877666
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeeEEE----eecCCCCeEEEEEeCCCCC
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELES----FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl-~t~~~l~~----~~~h~~~V~sl~fsp~~~~ 368 (713)
+.-||--...-...-......|.++.|++++.+.+++ ..|.|++=|. ...+.... +..-...+..++|.+ ++.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 6677754322222222346789999999998766644 8888888872 22222221 112233489999998 566
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCC-CcEEEEeCCcEEEE
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPI-GYLLCSNDHTTKFW 423 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spd-g~~laS~Dg~v~iW 423 (713)
++++|+ .|.|. ...+.++.-.+.... -...++.|.|..+ .-++.+.||.|.-|
T Consensus 246 ~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 666555 44443 333334333333221 2345778888655 45566788888766
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.88 E-value=0.0006 Score=79.90 Aligned_cols=134 Identities=10% Similarity=0.115 Sum_probs=96.5
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCC-EEEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCc--eeee-e--ccCCCCee
Q 005123 164 QSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSH-----NDNWMVSGDDGGAIKYWQNNMNN--VKAN-K--SAHKESVR 232 (713)
Q Consensus 164 ~dg~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~sp-----dg~~L~sgs~DG~I~vwdl~~~~--~~~~-~--~~~~~~V~ 232 (713)
....|+-.|++.++.+..+..+... |..++=.. +....++|-.+..|..||.+-.. ++.. . .......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577889999999999999988755 66554321 13445677778899999987542 2211 1 12344567
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
|++-+.+| +||+|+.+|.||+||-........+.+....|..|+.+.||++|++.+. ..|.|+|+
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 77776555 6999999999999995433334455577899999999999999988775 66777775
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.87 E-value=0.022 Score=66.72 Aligned_cols=284 Identities=12% Similarity=0.125 Sum_probs=160.2
Q ss_pred CCCCCceEEEEEccCC------CEEEEEECCCcEEEEe-CCCCceEEEE--e--ccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 141 NKNRCSINRVLWTPTG------RRLITGSQSGEFTLWN-GQSFNFEMIL--Q--AHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg------~~Latgs~dg~V~Iwd-~~t~~~~~~l--~--~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+.-...|.|++++|-+ +++++|..+..+.+.- +.+...+... . .-...|.-.+|--|..+|+++..||.
T Consensus 527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA 606 (1096)
T ss_pred heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence 3345789999999753 3788887766655432 3333332222 1 11344555666667889999999999
Q ss_pred EEEEEcC--CCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEE-EEcC--CC
Q 005123 210 IKYWQNN--MNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV-DWHP--TK 282 (713)
Q Consensus 210 I~vwdl~--~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl-~~sp--dg 282 (713)
+..|.++ ++...... .-...++.--.|+..++.-+.|..|+-..+|..+..-....+.- ..+..+ .|+. -.
T Consensus 607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhhhcccccccCC
Confidence 9876544 44332222 22345666667777666666666677777776544333322221 111111 1222 23
Q ss_pred CEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCee
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASK-----------D---QIIKLYDIRAMKE 346 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~-----------D---g~I~IwDl~t~~~ 346 (713)
..|+++.. +.+++.-++.-.. ++++. -......+++.+....+++.+. . ..++++|-++.+.
T Consensus 685 d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 44555544 5677776654322 22322 2334556666653333333321 1 1477888877766
Q ss_pred EEEeecCC----CCeEEEEEeCCCCCEEEEEEC----------CCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCC
Q 005123 347 LESFRGHR----KDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG 410 (713)
Q Consensus 347 l~~~~~h~----~~V~sl~fsp~~~~~lasgs~----------DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg 410 (713)
+...+... ..|.++.|..+.+.++++|.. .|.|.||.+.+... ++.... -.+.|.++.. -+|
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fng 840 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNG 840 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCC
Confidence 55433211 245666788855778877753 57888888876332 222211 1344444432 367
Q ss_pred cEEEEeCCcEEEEecCCCCC
Q 005123 411 YLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS~Dg~v~iWd~~~~~~ 430 (713)
+++|+-...|++|++...++
T Consensus 841 kllA~In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTERE 860 (1096)
T ss_pred eEEEecCcEEEEEEccccce
Confidence 89999999999999977644
No 373
>PRK10115 protease 2; Provisional
Probab=97.86 E-value=0.017 Score=68.39 Aligned_cols=239 Identities=10% Similarity=0.025 Sum_probs=123.3
Q ss_pred CceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC------CcEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------GAIKYW 213 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------G~I~vw 213 (713)
-.+..+.|++|+++|+.+.. .-.|++.|+.+++.+...... .-..++|++|++.|+.+..+ ..|.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45778899999999887643 235888899887633222111 11469999999877655432 357777
Q ss_pred EcCCC--ceeeeeccCCCCee-EEEEecCCCEEEEEEC---CCeEEEEEcC--CCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 214 QNNMN--NVKANKSAHKESVR-DLSFCRTDLKFCSCSD---DTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 214 dl~~~--~~~~~~~~~~~~V~-~l~fs~dg~~Las~s~---Dg~I~iwDl~--~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. +++....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33333333333333 3344557777665443 4578888853 3332222222222222222 2223333
Q ss_pred EEEeCC---CcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEE--EECCCCeeEEEee-cCCCCe
Q 005123 286 VSGGKD---SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRAMKELESFR-GHRKDV 357 (713)
Q Consensus 286 ~sgs~D---g~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg~I~I--wDl~t~~~l~~~~-~h~~~V 357 (713)
+....+ ..|...++.+......+..+ ...|..+.++ .+.++++...++.-++ +|+.+. .+..+. .....+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~ 361 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYV 361 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceE
Confidence 333222 23444455521222233333 3468888887 3345556666775444 454432 333333 222223
Q ss_pred EEEEEe--CCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 358 TALAWH--PFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 358 ~sl~fs--p~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
..+.++ .+++.++++.++ -+.|+.+|+.++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333344 323445555544 3568888876643
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.013 Score=62.32 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=126.2
Q ss_pred EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--
Q 005123 192 MVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-- 268 (713)
Q Consensus 192 l~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-- 268 (713)
-.|.++.+.|+ +--..+.|.-|+..+++.... .....+.++....++..|+++.. .+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35666666444 444567888888876654332 23344455555555556666543 367777765554333321
Q ss_pred ---CCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-
Q 005123 269 ---HGWDVKSVDWHPTKSLLVSGGK-----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333 (713)
Q Consensus 269 ---h~~~V~sl~~spdg~~L~sgs~-----------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D- 333 (713)
.....+.+.+.++|.+.+.... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 2245678889999886655433 123444443 466666666556667889999999888877654
Q ss_pred CeEEEEECCC--C----ee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCC-cEEEEEcCCCCceEEEecccCCCeEEEE
Q 005123 334 QIIKLYDIRA--M----KE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (713)
Q Consensus 334 g~I~IwDl~t--~----~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG-~I~Iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (713)
+.|.-|++.. + +. ...+....+..-.++... ++++.+++..+| .|.+|+-+ ++ ++.........+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GK-LLGEIKLPVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-Cc-EEEEEECCCCCCccce
Confidence 7788887752 1 11 122222345555666666 677776555554 89999986 44 4444444557788888
Q ss_pred EcC
Q 005123 406 WHP 408 (713)
Q Consensus 406 ~sp 408 (713)
|-.
T Consensus 262 FgG 264 (307)
T COG3386 262 FGG 264 (307)
T ss_pred EeC
Confidence 876
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.74 E-value=0.0018 Score=74.83 Aligned_cols=214 Identities=8% Similarity=0.023 Sum_probs=109.1
Q ss_pred cEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeccCCCCeeEEEEecC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~D------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d 239 (713)
.+..||..+.+....-...... -.+++. -++..+++|+.+ ..+..||..++.-...-.-...........-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 5778887776543221111111 112222 266777777753 34677887766432211111111111122236
Q ss_pred CCEEEEEECCC-----eEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEEEEEeCCC--------------------
Q 005123 240 DLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------- 292 (713)
Q Consensus 240 g~~Las~s~Dg-----~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg-------------------- 292 (713)
++..+.|+.++ +|.+||..+.+-.. .+.........+.+ ++++.++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 77777777653 48889987653221 11111112222333 477777777542
Q ss_pred ---cEEEEECCCCceE--EEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCC---CeeEEEeecCCCCeE
Q 005123 293 ---LVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRA---MKELESFRGHRKDVT 358 (713)
Q Consensus 293 ---~I~IwDl~t~~~~--~~~~~h~~~I~si~fspdg~~Latgs~D------g~I~IwDl~t---~~~l~~~~~h~~~V~ 358 (713)
.|..||.++.+-. ..+.........++ -++++.++|+.+ ..|..||..+ ++.+..+........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4777887765432 11111111111222 256777777654 2467899875 344444443333333
Q ss_pred EEEEeCCCCCEEEEEECCC--cEEEEEcCCCC
Q 005123 359 ALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~ 388 (713)
.+.+ ++.++++|+.|+ .+..||..+++
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 4443 688999999888 67777776554
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.72 E-value=0.012 Score=60.33 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=119.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......-.. .--..++.. +++.+...=.++...+||.++.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3456788876777777877766 68899999998765543322 222344444 3333444456889999999999888
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.++.- ...=..++ .|++.|+.+.....|+++|.++.+.++++.-. -..++.+.|- +|...|-.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88763 34555666 35777777777788999999988877766432 2246667775 6777776777788999
Q ss_pred EECCCCeeEEEeec------------C---CCCeEEEEEeCCCCCEEEEEE
Q 005123 339 YDIRAMKELESFRG------------H---RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 339 wDl~t~~~l~~~~~------------h---~~~V~sl~fsp~~~~~lasgs 374 (713)
.|..+|+.+..+.. . ..-.+.|||++..+++++||-
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 99999998776531 1 245789999996677777763
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.72 E-value=0.0073 Score=59.78 Aligned_cols=213 Identities=9% Similarity=0.045 Sum_probs=119.4
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC--CEEE-EEeCCCcEEEEEcC--CCceeeeec-----cC
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMV-SGDDGGAIKYWQNN--MNNVKANKS-----AH 227 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~-sgs~DG~I~vwdl~--~~~~~~~~~-----~~ 227 (713)
++.+--..+.|.-||....+..+. +.....+.++.+--.+ ..++ .++..-.|.-||.. .-.+..++. ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 444444567788899876543322 2112223333332222 2233 33333334446632 222333211 12
Q ss_pred CCCeeEEEEecCCCEEEEEEC---------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 005123 228 KESVRDLSFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 297 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~Las~s~---------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~Iw 297 (713)
+.+.++-..+|+|++++-.-. .|.++.|-... .+..+...-.--+.++|+.+.+.+... +.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 456677778899998543322 24455554322 222222233345678999877765544 456667778
Q ss_pred E--CCCCc-----eEEEEccC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 298 D--AKSGR-----ELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 298 D--l~t~~-----~~~~~~~h----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
| ..+|. .+..++.. .-.-..+++..+|++.+++...++|..+|..+++.+.+++.....|++++|--.+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 7 44443 33333321 1112334556688988999999999999999999999999999999999996422
Q ss_pred CCEEEEE
Q 005123 367 EEYFVSG 373 (713)
Q Consensus 367 ~~~lasg 373 (713)
-.++++.
T Consensus 266 ~d~~yvT 272 (310)
T KOG4499|consen 266 LDILYVT 272 (310)
T ss_pred ccEEEEE
Confidence 2444433
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.0062 Score=62.47 Aligned_cols=169 Identities=7% Similarity=0.077 Sum_probs=115.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
+.+-+..|+++.|+++.+.|++......-.||=...|+++.++.. .-..-..|.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345566699999999999999988888888887778888777632 2334566788888887777777888888877554
Q ss_pred eeEEEE----------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE---EccC-------CCCeEEEEE
Q 005123 261 QEERSL----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS---FHGH-------KNMVLCVKW 320 (713)
Q Consensus 261 ~~~~~l----------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~---~~~h-------~~~I~si~f 320 (713)
..+..+ .........++|++....|+++-+-.-+.||.+........ ...+ -..|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322211 11255678999999999999888877788877653331111 1111 234777888
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 321 NQ-NGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 321 sp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
++ .+.+|+.+.+++.|.-.|++ ++.+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 87 46667777788888888876 44444443
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.0026 Score=73.64 Aligned_cols=183 Identities=15% Similarity=0.183 Sum_probs=106.2
Q ss_pred CceEEEEEccCCCEEEEEE------CCC--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---------
Q 005123 145 CSINRVLWTPTGRRLITGS------QSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs------~dg--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------- 207 (713)
..|.+.++++||+.+|... .|. .|.+++... .. ..+.. ....++-.|++||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999988765 243 455556432 22 33322 2348889999998877776533
Q ss_pred ---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE---EEcCCCee-E---EEEcc-CCCceEEE
Q 005123 208 ---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV---WDFARCQE-E---RSLTG-HGWDVKSV 276 (713)
Q Consensus 208 ---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i---wDl~~~~~-~---~~l~~-h~~~V~sl 276 (713)
+.+.+.+++.++... .....|..+.|++||..|+... ++.|++ -....++. + ..+.. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333322 3356799999999999988776 477777 44344431 1 11222 23346889
Q ss_pred EEcCCCCEEEEEeCCCcEEEE--ECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 277 DWHPTKSLLVSGGKDSLVKLW--DAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~Iw--Dl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.|..++.++ ++..++...+| ++.... ...+.. ....+..|+-++ ..|++...++.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 999988854 55555544445 444222 212122 244566666654 24556666664443
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.014 Score=59.51 Aligned_cols=234 Identities=12% Similarity=0.072 Sum_probs=143.4
Q ss_pred EEEEEEccCCC-EEEEEeCCCc-EEEEEcCCCceeeeeccCCCC--eeEEEEecCCCEEEEEECC-----CeEEEEEcCC
Q 005123 189 IRSMVWSHNDN-WMVSGDDGGA-IKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDD-----TTVKVWDFAR 259 (713)
Q Consensus 189 V~sl~~spdg~-~L~sgs~DG~-I~vwdl~~~~~~~~~~~~~~~--V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~ 259 (713)
...|+|+|... -++.+-.-|+ ..++|.+......++...+.. .-.=.|++||.+|+..-+| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34567777543 4455555554 467888777655554332221 1223689999998876543 6899999874
Q ss_pred C-eeEEEEccCCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceEEEEc----cCCCCeE
Q 005123 260 C-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMVL 316 (713)
Q Consensus 260 ~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~------------------Dg~I~IwDl~t~~~~~~~~----~h~~~I~ 316 (713)
+ ..+.++..|.-.-..+.|..||+.|+++.. .-.+.+.|..+++.+.+.. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3 456677778878889999999999888642 1124455655665554332 2345678
Q ss_pred EEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeec-------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 317 CVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~-------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.++...||..++.+-..| --.|=-.+.++.+.-+.. ....|-+|+.+.+++-+.+|.-..+...|||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 888888887665443222 111111223344433321 23457888888744444444444556889999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.++..+.... -..+..++-...++.+.|.+|.+.+++.
T Consensus 310 ~tG~vv~~a~---l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 310 ATGAVVSEAA---LPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCCcEEeccc---ccccccceeccCceEEecCCceEEeccc
Confidence 8876433322 2345566777888888889999999854
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.62 E-value=0.044 Score=59.62 Aligned_cols=199 Identities=12% Similarity=0.162 Sum_probs=99.1
Q ss_pred CceEEEEEc-----------cCCCEEEEEE-CCCcEEEEeCCC----CceEEEEec---cC----CCEEEEEEccCCCEE
Q 005123 145 CSINRVLWT-----------PTGRRLITGS-QSGEFTLWNGQS----FNFEMILQA---HD----HAIRSMVWSHNDNWM 201 (713)
Q Consensus 145 ~~V~~v~~s-----------pdg~~Latgs-~dg~V~Iwd~~t----~~~~~~l~~---h~----~~V~sl~~spdg~~L 201 (713)
+++...-|+ .+.++|++.+ .++.|+|+|+.+ -++.+++.. +. ..-..+...++|+.+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 566666665 2456777776 678999999874 344555543 11 222344455688888
Q ss_pred EEE--eCC----CcEEEEEcCCCceeeeeccCC---CCeeEEEEecCCCEEEEEEC--------------------CCeE
Q 005123 202 VSG--DDG----GAIKYWQNNMNNVKANKSAHK---ESVRDLSFCRTDLKFCSCSD--------------------DTTV 252 (713)
Q Consensus 202 ~sg--s~D----G~I~vwdl~~~~~~~~~~~~~---~~V~~l~fs~dg~~Las~s~--------------------Dg~I 252 (713)
+++ +.+ |-+.++|-++.+++....... ..-.++.|.+..+.++++.. ..+|
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 875 222 567888888777776654422 23467778888888887643 3579
Q ss_pred EEEEcCCCeeEEEEccCC--CceEEEEEcCC--CCE-EEEEeCCCcEEEEEC-CCCc----eEEEEcc-----C------
Q 005123 253 KVWDFARCQEERSLTGHG--WDVKSVDWHPT--KSL-LVSGGKDSLVKLWDA-KSGR----ELCSFHG-----H------ 311 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~--~~V~sl~~spd--g~~-L~sgs~Dg~I~IwDl-~t~~----~~~~~~~-----h------ 311 (713)
.+||+.+.+.+.++.--. .....|.|..+ ..+ ++.+...++|..|-- +.++ .+..+.. .
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 999999999998887443 24667777654 333 333334455555533 3332 2222211 0
Q ss_pred ------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005123 312 ------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (713)
Q Consensus 312 ------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t 343 (713)
..-|+.|.+|.|.++|++++ .+|.|+.||+..
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 24579999999999998766 689999999975
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.59 E-value=0.064 Score=55.06 Aligned_cols=183 Identities=6% Similarity=0.006 Sum_probs=119.9
Q ss_pred CCceEEEEEccCCCEEEEEECCC--cEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg--~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
..-.-.+.|..++.++-+.+.-| .|+.+|+.+++......... ---..|+.. ++++....-.++...+||.++.+.
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 33455677777787777776655 68999999998876655332 122334443 445555677889999999999888
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-----CCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-----~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.++.- ...=+.|+ .|++.|+.++...+|+++|-++.+.++.+... -..++.+.|. +|...|-.-....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 877644 34455666 47788888888889999999887776665432 2357778887 566666666777899
Q ss_pred EEECCCCceEEEEcc---------------CCCCeEEEEEcCCCCEEEEEE
Q 005123 296 LWDAKSGRELCSFHG---------------HKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 296 IwDl~t~~~~~~~~~---------------h~~~I~si~fspdg~~Latgs 331 (713)
..|..+|+.+..+.. ...-.+.|+|.++.+.|++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999998876631 134589999998766665554
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.015 Score=59.18 Aligned_cols=232 Identities=11% Similarity=0.113 Sum_probs=139.7
Q ss_pred EEEEEccCCC-EEEEEECCCc-EEEEeCCCCceEEEEeccCCC--EEEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q 005123 148 NRVLWTPTGR-RLITGSQSGE-FTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (713)
Q Consensus 148 ~~v~~spdg~-~Latgs~dg~-V~Iwd~~t~~~~~~l~~h~~~--V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~ 218 (713)
..|+|+|... -++.+-.-|+ ..++|..+.....++...++. --.=.||+||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3567777643 4556655555 568888877666555432221 1123699999999976443 78999998854
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECC------------------CeEEEEEcCCCeeEEEEc----cCCCceEE
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------TTVKVWDFARCQEERSLT----GHGWDVKS 275 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D------------------g~I~iwDl~~~~~~~~l~----~h~~~V~s 275 (713)
..+.++..|.-.-..+.|..||+.++.+... -++.+.|..+++.+.+.. .+...|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 3455666777777889999999998887431 123334434444332221 23456888
Q ss_pred EEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q 005123 276 VDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR 342 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~ 342 (713)
++...|+..++.+-..|- -.+=-.+.++.+.-+. .....|-+|+.+.+..+++..+ ..+...|||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888875554433221 1111122333333322 2345688888887767776555 45578899999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++..+.....- .+..++- ...-|++.+.+|.|.++.-
T Consensus 311 tG~vv~~a~l~--daaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 311 TGAVVSEAALP--DAAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCcEEeccccc--cccccee---ccCceEEecCCceEEeccc
Confidence 99887654322 2233333 2334666677888887743
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.58 E-value=0.042 Score=58.10 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=109.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-~~ 221 (713)
..++|.|..+ +.++ ++..+. .+...+.++.-..+. .-......+....++..++ ++..|.|..= .+.++ -.
T Consensus 63 ~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWI-VGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEE-EEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEE-EcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4677777643 3344 444553 333333333322222 1223344444444443333 4444554332 22222 22
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-K 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl-~ 300 (713)
.........+.++..++|+++++++.....+.-||--...-...-+.....|.++.|.+++.+.+++ ..|.|++=|. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 2234455778899999999998888777777788854322222233356789999999997765544 8888888772 2
Q ss_pred CCceEEE----EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEE
Q 005123 301 SGRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 301 t~~~~~~----~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasg 373 (713)
..+.... +......+..++|.++++..++|+ .|. .+...+.++.-...+ .-...++.|.|.. . +.-.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~l 292 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVL 292 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEE
Confidence 2222111 111233488999998877777655 443 344555555444433 3346788999986 3 344445
Q ss_pred ECCCcEEEE
Q 005123 374 SLDGSIFHW 382 (713)
Q Consensus 374 s~DG~I~Iw 382 (713)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 678877655
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00059 Score=79.77 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCce-eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 275 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~-~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~s 275 (713)
.+..++.|+..|.|-..|+..+-. ...-......|++++|+.+|+.++.|-.+|.|.+||+.+++.++.+..+..+++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788898889999888766421 1222345678999999999999999999999999999999998888877665544
Q ss_pred ---EEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 276 ---VDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 276 ---l~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 445556667788777775 4543
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.015 Score=59.65 Aligned_cols=199 Identities=10% Similarity=0.136 Sum_probs=131.2
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.+....|.++.|+++.+.|++..+...-.||=..+++.++++.-. -.....|++..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445566999999999999999988888888877788888876422 2345678888888877777778888888776543
Q ss_pred eEEEE----------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee---EEEeecC-------CCCeEEEEEe
Q 005123 304 ELCSF----------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGH-------RKDVTALAWH 363 (713)
Q Consensus 304 ~~~~~----------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~---l~~~~~h-------~~~V~sl~fs 363 (713)
.+..+ ...+.....++|++....|+++-+..=+.||.+..... +.....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 32211 11245678899999888888888877788877653321 1111111 2357888999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCC-ceEEEecccC------CCeEEEEEcCCC-cEEEEeCCcEEEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHD------NTVWDLAWHPIG-YLLCSNDHTTKFW 423 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~-~~~~~~~~h~------~~V~~l~~spdg-~~laS~Dg~v~iW 423 (713)
+..+.+|+-+.+++.|.-.|....- ..+.+..+.. -....|+...+| .+++|+-+-.+.+
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence 8778888888888888888874432 1112221111 123456666666 4456655554444
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=9.5e-05 Score=72.79 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=84.9
Q ss_pred EEEEEECCCeEEEEEcCCCeeEEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-EEEccCCCCeEE-E
Q 005123 242 KFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLC-V 318 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~s-i 318 (713)
.|...+.|+.|+-++++..+....- ..+...-.-+ .-+..+++|+.+|.|++|........ ..+......|.+ |
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3555677888888887654322111 1111111112 23567999999999999987632111 111111222333 2
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEE--ECCCcEEEEEcCC
Q 005123 319 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSG--SLDGSIFHWLVGH 386 (713)
Q Consensus 319 ~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasg--s~DG~I~Iwd~~~ 386 (713)
.--.++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+. .+++|+.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 233356788899999999999999888888777777 4455444444 45566666 6666777777643
No 388
>PRK13684 Ycf48-like protein; Provisional
Probab=97.52 E-value=0.17 Score=54.65 Aligned_cols=271 Identities=8% Similarity=0.061 Sum_probs=129.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEE-e-CCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLW-N-GQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iw-d-~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-...+.+|+|..+.+-+|+|. +|.|..= | -++.+.... +......+.++.|.. +..+++ +..+.|..- .+.++
T Consensus 44 ~~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-G~~g~i~~S-~DgG~ 119 (334)
T PRK13684 44 TEANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIV-GQPSLLLHT-TDGGK 119 (334)
T ss_pred CCCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEe-CCCceEEEE-CCCCC
Confidence 355789999986666566664 4544332 2 111221110 101233477788863 334444 444543332 12222
Q ss_pred eeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 220 VKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 220 ~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.-..+. ........+....++.. ..++..|.|..=+ +.++.-.. .......+.++.+.+++.+++++. .|.+.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~-~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~ 196 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTA-EMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFY 196 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcc-eeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEE
Confidence 211111 11112222222222322 3334444443322 11222111 122345788999999876665554 46544
Q ss_pred E-EECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCE
Q 005123 296 L-WDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEY 369 (713)
Q Consensus 296 I-wDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~ 369 (713)
. +| ..++.-. ........++++.+.++++.++++ ..|.+++=+.+.++.-...... ...+.++.+.+ ++.+
T Consensus 197 ~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~ 273 (334)
T PRK13684 197 STWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEI 273 (334)
T ss_pred EEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCE
Confidence 3 22 2222222 222345678999999998877665 5676654334444433222211 23578888887 5555
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
+ .++.+|.|.. ..+.+..-.... ..-....+.+.|..++..++ +..|.|..|+-
T Consensus 274 ~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 274 W-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred E-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 4 4556776643 333332222211 11123577777776665554 57788888753
No 389
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.15 Score=52.41 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=121.6
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe---
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--- 261 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--- 261 (713)
-.+.+..+.++ +++.+.+..+.-++|.|+.+...-..+......-..-.|.-.|+++.++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 35566777885 5678888888889999998765433332222111223334468899998877778889986543
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
....+......-..++++ |++-..+..|+-+.|.|+.+......+ ......+.++..+++..+++.. +--+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 233444444555677777 888888889999999999865432222 1123367888887665555544 3347788
Q ss_pred ECCCCeeEEEeecC-CCC---eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 340 DIRAMKELESFRGH-RKD---VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 340 Dl~t~~~l~~~~~h-~~~---V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|..+.+....+... ... ++.+.. .+++......+.-+-+-|+++..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 88766644433221 122 333333 45666666777777778876544
No 390
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.48 E-value=0.037 Score=60.70 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=80.1
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEEcCCC--c--eeeeeccCCCCeeEEEEecCCCEEEEEECCC
Q 005123 187 HAIRSMVWSHNDNWMVSGD-----------DGG-AIKYWQNNMN--N--VKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs-----------~DG-~I~vwdl~~~--~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg 250 (713)
.....|+|.++|+++++.. ..+ .|.+++-.++ + ....+.......+.+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788988888777653 223 6777754322 2 222333334456889998888 44444444
Q ss_pred eEEEEEcCCC-----eeEEE---Ecc----CCCceEEEEEcCCCCEEEEEeCC-------------------CcEEEEEC
Q 005123 251 TVKVWDFARC-----QEERS---LTG----HGWDVKSVDWHPTKSLLVSGGKD-------------------SLVKLWDA 299 (713)
Q Consensus 251 ~I~iwDl~~~-----~~~~~---l~~----h~~~V~sl~~spdg~~L~sgs~D-------------------g~I~IwDl 299 (713)
.+++.|.... +.... +.. +......++|.+||.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454211 22112 221 12447789999999876654421 34555666
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
++++.. .+.........++|+++|+++++-..
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 554432 23222334578999999988776443
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0036 Score=68.40 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=99.7
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE-------EEEEECCCeEEEEEcCCCe--eEEEE
Q 005123 197 NDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFARCQ--EERSL 266 (713)
Q Consensus 197 dg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~-------Las~s~Dg~I~iwDl~~~~--~~~~l 266 (713)
+.++|+ ++.....|+-.|++.++++...+.+.. |+-+.+.++.+. -+.|-.|..|.-||.+-.. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 445544 455567788889999999998877666 777777776532 2456668889999986322 22222
Q ss_pred cc----CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 267 TG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 267 ~~----h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.. ......|++-..+| +||+|+.+|.|++||--..+....+.+....|..|..+.||++|++.+ +.+|.+.|+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22 23456677766555 799999999999999733333445677888999999999999988665 5567777654
No 392
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.46 E-value=0.029 Score=66.70 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCCC--------CeeEEEEec----------------CCCEEEEEECCCeEE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--------SVRDLSFCR----------------TDLKFCSCSDDTTVK 253 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~--------~V~~l~fs~----------------dg~~Las~s~Dg~I~ 253 (713)
+..|++++.++.|.-.|.++++.+..+..... .++.+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777778788888889888887776543221 122333321 234788888999999
Q ss_pred EEEcCCCeeEEEEccCCCceE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceEEEE
Q 005123 254 VWDFARCQEERSLTGHGWDVK-------------SVDWHP--TKSLLVSGGK----------DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~-------------sl~~sp--dg~~L~sgs~----------Dg~I~IwDl~t~~~~~~~ 308 (713)
-.|.++++.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|+++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 11110 111112 2446666643 688999999999998776
Q ss_pred ccC---------CCC--------e-EEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeeEEEeec
Q 005123 309 HGH---------KNM--------V-LCVKWNQNGNWVLTASK------------------DQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 309 ~~h---------~~~--------I-~si~fspdg~~Latgs~------------------Dg~I~IwDl~t~~~l~~~~~ 352 (713)
..- .+. + ..+++.++..+++.+.. .+.|.-.|++|++.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 000 1 22344444444444221 23566778888888777754
Q ss_pred CCCCeEE---------EEEeCCCC---CEEEEEECCCcEEEEEcCCCCceEE
Q 005123 353 HRKDVTA---------LAWHPFHE---EYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 353 h~~~V~s---------l~fsp~~~---~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
....+.+ +.+...++ ..++.++.+|.++++|-++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 2211111 11211123 2788888888899998887765443
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.46 E-value=0.007 Score=70.02 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=119.8
Q ss_pred ccCCCEEEEEECC------CcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q 005123 153 TPTGRRLITGSQS------GEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 219 (713)
Q Consensus 153 spdg~~Latgs~d------g~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl~~~~ 219 (713)
+..+.++++|+.+ ..|..||..+........- ......+++.. ++.+.++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345667777776 3577888877644333222 22223344444 56778888888 346677776665
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
-...-.-.......-...-+|...++|+.|| +|..||.++.+-.. .+......+..+.+ ++.+.++|+.|+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 3221111111111111122778888888886 47777776543221 11111222223333 477778887554
Q ss_pred ------cEEEEECCCCceEE--EEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCee--EEEeecCCCCe
Q 005123 293 ------LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKE--LESFRGHRKDV 357 (713)
Q Consensus 293 ------~I~IwDl~t~~~~~--~~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~--l~~~~~h~~~V 357 (713)
++..||..+.+-.. .+...........+ ++.++++|+.|+ +|..||..+.+- +.........+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 47788887754332 22222222222233 677788888776 377788776443 32223233333
Q ss_pred EEEEEeCCCCCEEEEEECCCc-----EEEEEcC
Q 005123 358 TALAWHPFHEEYFVSGSLDGS-----IFHWLVG 385 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~-----I~Iwd~~ 385 (713)
..+.+ ++.++++|+.||. |..||-.
T Consensus 517 g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 517 GVVVL---GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred cEEEE---CCEEEEEecccCccccceeEEcCCC
Confidence 33333 6788888887763 4455443
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.45 E-value=0.029 Score=66.73 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=119.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC--------EEEEEEcc----------------CCCEEEEEeCCCcEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--------IRSMVWSH----------------NDNWMVSGDDGGAIK 211 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~--------V~sl~~sp----------------dg~~L~sgs~DG~I~ 211 (713)
+..|++++.++.|+-.|..+++.+-++...... .+.+++.. .++.|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888776665432211 12233321 345788888999999
Q ss_pred EEEcCCCceeeeeccCCCCee-------------EEEEec--CCCEEEEEEC----------CCeEEEEEcCCCeeEEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVR-------------DLSFCR--TDLKFCSCSD----------DTTVKVWDFARCQEERSL 266 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~-------------~l~fs~--dg~~Las~s~----------Dg~I~iwDl~~~~~~~~l 266 (713)
-.|.++++.+..+.. +..|. .+.-.+ .+..+++++. +|.|+-+|+++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988866532 11110 000011 1334555532 688999999999987766
Q ss_pred ccC---------CC--------ce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEcc
Q 005123 267 TGH---------GW--------DV-KSVDWHPTKSLLVSGG------------------KDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 267 ~~h---------~~--------~V-~sl~~spdg~~L~sgs------------------~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
..- .+ .+ ..++++++..+++.+. ..+.|.-.|+++|+.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 00 11 2344555444444422 134577788899988877654
Q ss_pred CCCC---------eEEEEEcC-CCC---EEEEEECCCeEEEEECCCCeeEEEee
Q 005123 311 HKNM---------VLCVKWNQ-NGN---WVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 311 h~~~---------I~si~fsp-dg~---~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.... ..-+.+.. +|+ .|+.++++|.++++|.++++.+..++
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2111 11122333 553 78899999999999999999887654
No 395
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00056 Score=75.95 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~-si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
...|.-+.|+|.-.+||.+..+|.|.++.++ ...+.++..++..++ +++|.+||++||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568899999999999999999999999988 778888876666666 99999999999999999999999999998887
Q ss_pred Eee-cCCCCeEEEEEeC
Q 005123 349 SFR-GHRKDVTALAWHP 364 (713)
Q Consensus 349 ~~~-~h~~~V~sl~fsp 364 (713)
.+. .-...|+++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346688888864
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.0002 Score=70.55 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-c-cCCCceEEEE
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-T-GHGWDVKSVD 277 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~-~h~~~V~sl~ 277 (713)
|...+.||.|.-+++...+....-. .+... .....-+..+++|+.+|.|++|+..-....... . ......+.|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3445567777777655433221111 11111 222334567899999999999987622111111 1 1122223333
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-CCeEEEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 005123 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRA 343 (713)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~I~si~fspdg~~Latg--s~Dg~I~IwDl~t 343 (713)
...++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+..+++|+.+ +.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34466788999999999999999888777766666 444444444455555555 5566666666543
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.40 E-value=0.13 Score=53.33 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=125.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCC-------CCceEEEEec-----cCCCEEEEEEccCCC------------EE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQ-------SFNFEMILQA-----HDHAIRSMVWSHNDN------------WM 201 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~-------t~~~~~~l~~-----h~~~V~sl~~spdg~------------~L 201 (713)
.-+.|+++|.+-+.++....+...+||.. ...++..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888887888999999986 1223333331 234577777764322 36
Q ss_pred EEEeCCCcEEEEEcCCCce-----eeeec-cCCCC-eeEEEEecC--CCEEEEE-ECCCeEEEEEcCCCeeE--EEEccC
Q 005123 202 VSGDDGGAIKYWQNNMNNV-----KANKS-AHKES-VRDLSFCRT--DLKFCSC-SDDTTVKVWDFARCQEE--RSLTGH 269 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~-----~~~~~-~~~~~-V~~l~fs~d--g~~Las~-s~Dg~I~iwDl~~~~~~--~~l~~h 269 (713)
+.+++||+|.-|.-.-+.. ...+. ..... -..+++... +.+|+.+ -..++|.|+|-.=.+.. ..+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7789999999998432211 11111 11222 345555432 4555544 45788999985322111 001100
Q ss_pred -----CC--ce---------EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC------CCC
Q 005123 270 -----GW--DV---------KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGN 325 (713)
Q Consensus 270 -----~~--~V---------~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp------dg~ 325 (713)
-. .| +-..-.++.+.=+.+..-|.|.+||+. ++.++++. +.-..-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 01 111111222222233334789999976 77777774 2233455666644 467
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecCCC------CeEEEEEeC
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAWHP 364 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------~V~sl~fsp 364 (713)
+|+---.||+|..||..+++.+..+....+ .++.|+|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777666899999999999988877765443 356777754
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.086 Score=54.16 Aligned_cols=213 Identities=12% Similarity=0.066 Sum_probs=130.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK- 345 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~- 345 (713)
..+-+..+.++ ++++..+..+.-|+|+|+.+-.....+.. ..+.-.++.. .|++..++..|.-+.++|+.+-.
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 45667788887 66788888888899999988654433322 2233344444 68899999877778889987543
Q ss_pred --eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEEEeCCcEEE
Q 005123 346 --ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSNDHTTKF 422 (713)
Q Consensus 346 --~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~laS~Dg~v~i 422 (713)
....+.........++.| +++-..+..|+-+.|.|+........+-.-..+ .+.++..+++..+++..|.-+.+
T Consensus 161 P~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvli 237 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLI 237 (370)
T ss_pred ceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEE
Confidence 233344444445677764 567777788999999999876655444333334 78999999999888888888888
Q ss_pred EecCCCCCcccc-ccccCCcccc----cccceEeeecCCCCCCCCCCCCCCCCCCCCc----ccCCCCCCCCCCC
Q 005123 423 WCRNRPGDTARD-KFNMGQNQGY----GEQNAVFAGRMPGNFPLPEGPTTPGPFAPGL----TRNEGTIPGVGVA 488 (713)
Q Consensus 423 Wd~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~rag~~~~gl----gr~~gtv~Gy~~~ 488 (713)
-|.+......+. .++....... -.....+-.+.+-...+-+..+++++|+.+- |.++..+.-|+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y 312 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNY 312 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCe
Confidence 877666533322 2222111000 0011112222222233344457778876654 5555566666554
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0018 Score=75.95 Aligned_cols=101 Identities=11% Similarity=0.220 Sum_probs=75.9
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~ 233 (713)
.+..+++|+..|.|...|.... +....-..-.+.|++++|+.||++++.|-.+|.|.+||+..++....+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999988886642 111222233678999999999999999999999999999999988888777766555
Q ss_pred EE---EecCCCEEEEEECCCeEEEEEc
Q 005123 234 LS---FCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 234 l~---fs~dg~~Las~s~Dg~I~iwDl 257 (713)
+- +..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 4556667888877776 5554
No 400
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.017 Score=51.13 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred eeEEEEec---CC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 231 VRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 231 V~~l~fs~---dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
|++++++. |+ +.|++|++|..||+|+-+ +.+.++. ..+.|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55666543 33 679999999999999844 4566665 4467888877655 679999999999999853 3344
Q ss_pred EEccCCCCeEEEEEcC---CC-CEEEEEECCCeEEE
Q 005123 307 SFHGHKNMVLCVKWNQ---NG-NWVLTASKDQIIKL 338 (713)
Q Consensus 307 ~~~~h~~~I~si~fsp---dg-~~Latgs~Dg~I~I 338 (713)
.++ .+..++++.+.. || .-|++|-.+|.|-+
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444 334477776544 22 36889999998754
No 401
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.001 Score=73.93 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
...|..+.|+|.-.+||++..+|.|.++.+. ...+.++..+...++ +++|.+ ++++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999999999999998 888999998888888 999999 7999999999999999999998877
Q ss_pred EEEecccCCCeEEEEEcC
Q 005123 391 VEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (713)
......-+..|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 665444567788888863
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.01 Score=70.04 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred CEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceee-----ee------ccCCCCeeEEEEecCC-CEEEEEECCCeEE
Q 005123 188 AIRSMVWSHNDNWMVSG--DDGGAIKYWQNNMNNVKA-----NK------SAHKESVRDLSFCRTD-LKFCSCSDDTTVK 253 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sg--s~DG~I~vwdl~~~~~~~-----~~------~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~ 253 (713)
.|..+...+|+...++. +.+-.|.+||+++-.... -+ .....-..++.|++.= ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676655443 334478889987542211 11 1122345667777643 3356777888888
Q ss_pred EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEE
Q 005123 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Lat 329 (713)
+..+........-......++|++|++.|+.+++|...|++.-|... .+....+.+ ....|.+|+|-..-.+|++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88764332222112245678999999999999999999999988654 333333321 2467999999887777664
No 403
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.0054 Score=70.98 Aligned_cols=185 Identities=8% Similarity=0.042 Sum_probs=95.8
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 005123 155 TGRRLITGSQS------GEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMNNVK 221 (713)
Q Consensus 155 dg~~Latgs~d------g~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~~~~~ 221 (713)
++..+++|+.+ ..+..||..+......-. ........+. -++++.+.|+.++ .+.+||..+++-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56667777753 347788877654322111 1111122222 2677778888754 4788888766432
Q ss_pred e--eeccCCCCeeEEEEecCCCEEEEEECC-----------------------CeEEEEEcCCCeeE--EEEccCCCceE
Q 005123 222 A--NKSAHKESVRDLSFCRTDLKFCSCSDD-----------------------TTVKVWDFARCQEE--RSLTGHGWDVK 274 (713)
Q Consensus 222 ~--~~~~~~~~V~~l~fs~dg~~Las~s~D-----------------------g~I~iwDl~~~~~~--~~l~~h~~~V~ 274 (713)
. .+.........+. -+++..+.|+.+ .+|..||.++.+-. ..+........
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111111222 266777777654 24677877654322 11211111112
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCC-Cc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCC
Q 005123 275 SVDWHPTKSLLVSGGKD------SLVKLWDAKS-GR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRA 343 (713)
Q Consensus 275 sl~~spdg~~L~sgs~D------g~I~IwDl~t-~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--~I~IwDl~t 343 (713)
.+.+ ++++.++|+.+ ..|..||.++ .+ .+..+.........+.+ ++++.++|+.|+ .+..||..+
T Consensus 459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 2222 36667777654 2467899886 33 23333322333333333 788888998888 677777776
Q ss_pred CeeE
Q 005123 344 MKEL 347 (713)
Q Consensus 344 ~~~l 347 (713)
.+-.
T Consensus 535 ~~W~ 538 (557)
T PHA02713 535 YEWN 538 (557)
T ss_pred cccc
Confidence 5533
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.23 E-value=0.19 Score=55.43 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCe-EEEEEcCC-----------------CCE-EEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV-LCVKWNQN-----------------GNW-VLT 329 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I-~si~fspd-----------------g~~-Lat 329 (713)
....+.+|+.+|++++.++...-|.|.|+|+.++..++.+++..+.- .-+....+ ..+ ++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34568899999999999998888999999999998888887654421 11111111 112 334
Q ss_pred EECCCeEEEEECCCCeeEEEeec
Q 005123 330 ASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
+-.-|.|.||+++++..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 56788999999999888877654
No 405
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.22 E-value=0.39 Score=52.66 Aligned_cols=192 Identities=9% Similarity=0.047 Sum_probs=110.9
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEE
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDL 234 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l 234 (713)
.++++..+|.|.-.|.++++.+-....- ...+.+-.+..+|+ |++++.++.+..+|.++++.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4566678888888888887755332221 12222223333555 7778888989999998888887776555 112222
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC---CceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEc
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+..++ .+...+.++.+...|..+++.+....... ..+..--.. ....++.+.. ++.+.-+|.++|..+...+
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 222233 34444478889998888887766544321 111111111 2334555555 5677778888887766532
Q ss_pred cC----CCCe--E-EE---EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 310 GH----KNMV--L-CV---KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 310 ~h----~~~I--~-si---~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
.. ...+ . .+ ...-+ .-++.++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 11 1111 0 11 11112 23466777888999999999999888754
No 406
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.019 Score=50.85 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=70.4
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 273 VKSVDWHP---TK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 273 V~sl~~sp---dg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
|+++++.. || +.|++|+.|..|++|+-. +.+..+. ....|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55665544 32 589999999999999754 4566665 4566888876655 679999999999999863 3344
Q ss_pred EeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEE
Q 005123 349 SFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFH 381 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~I 381 (713)
.++ .+..++++++...+ ..-|++|-.+|.|-+
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444 33447777765422 236888888888743
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.04 E-value=0.47 Score=51.95 Aligned_cols=194 Identities=9% Similarity=0.072 Sum_probs=94.4
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC----ceeeeecc---CC----CCeeEEEEecCCCEEEEEEC------CCeEEEEEcC
Q 005123 197 NDNWMVSGD-DGGAIKYWQNNMN----NVKANKSA---HK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFA 258 (713)
Q Consensus 197 dg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~---~~----~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~ 258 (713)
+.++|++.+ .++.|.|+|+.+. ++.+.+.. +. ..-..+...++|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999998854 33333322 11 12223344568888887532 2468888888
Q ss_pred CCeeEEEEccCC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceEEEEccCC--C
Q 005123 259 RCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--------------------DSLVKLWDAKSGRELCSFHGHK--N 313 (713)
Q Consensus 259 ~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~--------------------Dg~I~IwDl~t~~~~~~~~~h~--~ 313 (713)
+.+.+....... ..-..+-|.+..+.+++..- ..+|.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777766654322 23457788888888887642 3569999999999998886432 2
Q ss_pred CeEEEEEcCC--CCEEEE-EECCCeEEEEEC-CCCe----eEEEeec-----C------------CCCeEEEEEeCCCCC
Q 005123 314 MVLCVKWNQN--GNWVLT-ASKDQIIKLYDI-RAMK----ELESFRG-----H------------RKDVTALAWHPFHEE 368 (713)
Q Consensus 314 ~I~si~fspd--g~~Lat-gs~Dg~I~IwDl-~t~~----~l~~~~~-----h------------~~~V~sl~fsp~~~~ 368 (713)
....|.|..+ ..+=++ +.-..+|..|-- +.++ .+..+.. . ..-|+.|.+|-|+..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3567777654 444333 334445555533 3332 2222211 1 234799999995555
Q ss_pred EEEEEECCCcEEEEEcCCCCce
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
+.+++=.+|.|+.||+......
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 5566667999999999775543
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.022 Score=62.52 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=98.9
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCE-------EEEEECCCeEEEEECCCC-e-eEEEeecCC-
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-------VLTASKDQIIKLYDIRAM-K-ELESFRGHR- 354 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~-------Latgs~Dg~I~IwDl~t~-~-~l~~~~~h~- 354 (713)
|..+.....|+-.|++.|+.+..++-+.. |+-+.+.++.+. -++|-+|..|.-||.|-. + .+.....|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556788899999999998886665 777778776432 245667888999998732 2 232233332
Q ss_pred ---CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEEecCC
Q 005123 355 ---KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFWCRNR 427 (713)
Q Consensus 355 ---~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iWd~~~ 427 (713)
....|++-. ...+||+||.+|.|++||- ........+-+-...|..|..+.+|.+| |+.+..+.+-+..-
T Consensus 428 ~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 428 STKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 234444443 5678999999999999997 5555555666677899999999999766 66888888887643
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.00 E-value=0.1 Score=54.04 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=91.4
Q ss_pred ceEEEEEccCCCEEEEEE---CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 005123 146 SINRVLWTPTGRRLITGS---QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs---~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd-l~~~~~~ 221 (713)
.+.+.++++|++.+|... ....|+++.... ....+. ....++.-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887666 334455554432 222221 234788889999987777777667777774 2333221
Q ss_pred e-eec--cCCCCeeEEEEecCCCEEEEEE---CCCeEEEEEcC---CC------eeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 222 A-NKS--AHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFA---RC------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 222 ~-~~~--~~~~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~---~~------~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
. ... .....|+++.+++||..++... .++.|.|--+. .+ ............+.+++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 1122899999999999988766 35677776553 22 01112223356899999999988777
Q ss_pred EEeCCCc
Q 005123 287 SGGKDSL 293 (713)
Q Consensus 287 sgs~Dg~ 293 (713)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7665443
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.95 E-value=0.19 Score=52.08 Aligned_cols=144 Identities=12% Similarity=0.015 Sum_probs=89.8
Q ss_pred CEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE-cCCCeeE
Q 005123 188 AIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD-FARCQEE 263 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD-l~~~~~~ 263 (713)
.+.+.++++|++.++... ....+.++.. +....... ....+..-+|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887655 2334555543 33222221 334788889999988777777677777774 2333221
Q ss_pred -EEEccC--CCceEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--c----eEEEEccCCCCeEEEEEcCCCCEEE
Q 005123 264 -RSLTGH--GWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAK---SG--R----ELCSFHGHKNMVLCVKWNQNGNWVL 328 (713)
Q Consensus 264 -~~l~~h--~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~---t~--~----~~~~~~~h~~~I~si~fspdg~~La 328 (713)
..+... ...|.++.+++||..++... .++.|.|--+. .+ . .+.........++.++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222211 12899999999999888776 24667666442 22 1 1112223356789999999988777
Q ss_pred EEECCC
Q 005123 329 TASKDQ 334 (713)
Q Consensus 329 tgs~Dg 334 (713)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.055 Score=62.66 Aligned_cols=184 Identities=13% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeE
Q 005123 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEE 263 (713)
Q Consensus 197 dg~~L~sgs~D------G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~ 263 (713)
.+.++++|+.+ ..+..+|..++.-.....- ....-.++++. ++..+++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 35566677666 3577888777643322211 12223334443 55777888888 35778887665422
Q ss_pred E--EEccCCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceE--EEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 264 ~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~--~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
. .+...........+ +|.+.|+|+.||. |..||.++.+-. ............+.+ +|++.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 2 12222222222333 4788889988864 778888764422 212211222222223 788888888554
Q ss_pred ------eEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-----EEEEEcCCCC
Q 005123 335 ------IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-----IFHWLVGHET 388 (713)
Q Consensus 335 ------~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-----I~Iwd~~~~~ 388 (713)
++..||-.+.+- +..+..-..... ++.- ++.+++.|+.|+. |..||..+..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 577888776443 222222222222 3322 6788888888873 6677776554
No 412
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.0027 Score=42.84 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=33.7
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+.+..+..|...|.+++|.++++++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=96.86 E-value=0.34 Score=52.36 Aligned_cols=151 Identities=9% Similarity=0.068 Sum_probs=86.1
Q ss_pred CCCeeEEEEecCCCEEEEEECCCeEEE-EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 228 KESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~Las~s~Dg~I~i-wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
...+.++.+.+++.+++++ ..|.+.. +|-....-..........++++.+.++++.++++ ..|.+++=+.+.++.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4578889998887665554 4554443 2222111122223345678999999988876665 45766543344444322
Q ss_pred EEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 307 SFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 307 ~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.... ....+..+.+.+++..++ ++.+|.|. .....++...... .-....+.+.|.. +++. +..+..|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~i 325 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVL 325 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceE
Confidence 2211 223578889988777555 44567554 3444444433332 2223577788775 4444 456678888
Q ss_pred EEEEc
Q 005123 380 FHWLV 384 (713)
Q Consensus 380 ~Iwd~ 384 (713)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
No 414
>PHA03098 kelch-like protein; Provisional
Probab=96.86 E-value=0.03 Score=64.67 Aligned_cols=185 Identities=10% Similarity=0.113 Sum_probs=89.2
Q ss_pred cCCCEEEEEECCC------cEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 005123 154 PTGRRLITGSQSG------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNV 220 (713)
Q Consensus 154 pdg~~Latgs~dg------~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~~ 220 (713)
-++..+++|+.++ .+..||..+.+....-... ......+.+ ++++++.|+.+ ..+.+||..++.-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556667776542 5778887776553221111 111222222 67777788765 3467788776543
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
...-..........+..-+++.++.|+.+ ..+.+||..+.+-... +.........+.. ++++++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISY 448 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccC
Confidence 22111111111111122356666666632 4588889876533221 1111111122222 45666666543
Q ss_pred -------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 292 -------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 292 -------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
..+.+||.++.+-... +.........+.+ ++++++.|+.+ ..|.+||.++.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887543221 1111111122222 66666777654 36777777654
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.83 E-value=0.11 Score=51.75 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=85.6
Q ss_pred CCEEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEE-EECCCeEEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDD---------GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWD 256 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~---------DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las-~s~Dg~I~iwD 256 (713)
...+.-..+|+|++++-.-. .|.++.|-... .+..+...-.--+.|+|+.+.+.+.. -+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 44556677889998543222 24455553321 12222223334467889887766554 45577887888
Q ss_pred --cCCC-----eeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC
Q 005123 257 --FARC-----QEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (713)
Q Consensus 257 --l~~~-----~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp 322 (713)
..++ +.+..++.. .-.--.++++-+|++.+++-..++|..+|..+|+.+.+++-....|+|++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3333 233333321 11123455566889999998999999999999999999998889999999954
No 416
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=96.79 E-value=0.96 Score=48.14 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=108.4
Q ss_pred CCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCce-----------
Q 005123 155 TGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNV----------- 220 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~----------- 220 (713)
++++|+.|+++| |++.|..+ .+..+.+ +...|+++......+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 45555554 2333333 467899999988877766544 444599998743221
Q ss_pred ----eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCC----eeEEEE---cc-CCCceEEEEEcC--CCCEE
Q 005123 221 ----KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC----QEERSL---TG-HGWDVKSVDWHP--TKSLL 285 (713)
Q Consensus 221 ----~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~----~~~~~l---~~-h~~~V~sl~~sp--dg~~L 285 (713)
......+......+.+.... ..++++....+|.++...+. ...+.+ .. ....+..+..+. ....|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01112233333444444322 23344445566776544221 111110 00 112233333232 24567
Q ss_pred EEEeCCCcEEEEECCC--CceEE---E--EccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecCCC
Q 005123 286 VSGGKDSLVKLWDAKS--GRELC---S--FHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGHRK 355 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t--~~~~~---~--~~~h~-~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h~~ 355 (713)
++|+..+...++++.. ..... . ..... ..+....+ .++.+|+ +.++ ...+.|....+.. ..+ ....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~~~l-~w~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CYDE-FGVFVNLYGKRRSRNPIL-HWEF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EECc-EEEEEeCCCCccccceEE-EcCC
Confidence 7777643344555432 11000 0 01111 23333333 3444444 4333 3455555421221 122 2555
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
...++++.. .+|++-. +..|.|+++.++..
T Consensus 245 ~p~~~~~~~---pyll~~~-~~~ievr~l~~~~l 274 (302)
T smart00036 245 MPESFAYHS---PYLLAFH-DNGIEIRSIKTGEL 274 (302)
T ss_pred cccEEEEEC---CEEEEEc-CCcEEEEECCCCce
Confidence 667777753 4555554 44699999987754
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.79 E-value=0.35 Score=52.25 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=117.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCce---EEEE----eccCCCEEEEEEccC---CCEEEEEeC-C-------
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMIL----QAHDHAIRSMVWSHN---DNWMVSGDD-G------- 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---~~~l----~~h~~~V~sl~~spd---g~~L~sgs~-D------- 207 (713)
.-++|+|.|||++|+ +...|.|++++ .++.. +..+ .........++++++ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 457899999987655 56699999999 44433 2222 123466899999984 344443322 1
Q ss_pred -CcEEEEEcCCC-------cee-eeec---cCCCCeeEEEEecCCCEEEEEECCC-------------eEEEEEcCCCe-
Q 005123 208 -GAIKYWQNNMN-------NVK-ANKS---AHKESVRDLSFCRTDLKFCSCSDDT-------------TVKVWDFARCQ- 261 (713)
Q Consensus 208 -G~I~vwdl~~~-------~~~-~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg-------------~I~iwDl~~~~- 261 (713)
..|.-|.+..+ +.+ ..+. ........|.|.+|+.++++.++.+ .|.-.|....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 111 1111 1234556799999997766655432 23333322110
Q ss_pred -----------eEEEEccCCCceEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCc-------------------------
Q 005123 262 -----------EERSLTGHGWDVKSVDWHPT-KSLLVSG-GKDSLVKLWDAKSGR------------------------- 303 (713)
Q Consensus 262 -----------~~~~l~~h~~~V~sl~~spd-g~~L~sg-s~Dg~I~IwDl~t~~------------------------- 303 (713)
....+..--.....++|++. ++++++= +.|..=.|.-++.+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 00111111123568899998 5444331 122222222222111
Q ss_pred ----eEEEEccCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeeEE---E-eecCCCCeEEEEEeCCCCC
Q 005123 304 ----ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELE---S-FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 ----~~~~~~~h~~~I~si~fsp-------dg~~Latgs~Dg~I~IwDl~t~~~l~---~-~~~h~~~V~sl~fsp~~~~ 368 (713)
.+..+. +...++.+.|.. ++.+|++.-..+.|...++++...+. . +......+..|++.+ ++.
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~ 318 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGA 318 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCe
Confidence 112222 234566777753 34566666666788888887553322 2 223445799999999 788
Q ss_pred EEEEEECCCcEE
Q 005123 369 YFVSGSLDGSIF 380 (713)
Q Consensus 369 ~lasgs~DG~I~ 380 (713)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888874
No 418
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.78 E-value=0.0036 Score=42.16 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.1
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
+.+..+..|...|.+++|+++++++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667888999999999999999999999999996
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.69 E-value=0.52 Score=51.64 Aligned_cols=142 Identities=5% Similarity=0.031 Sum_probs=81.6
Q ss_pred CceEEEEEccCCCEEEEEE-----------CCC-cEEEEeCCC--Cce--EEEEeccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 145 CSINRVLWTPTGRRLITGS-----------QSG-EFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-----------~dg-~V~Iwd~~t--~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-...+.+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999998776653 223 677776432 332 23443334456889998887 44455444
Q ss_pred cEEEEEcCCC-----ce--e-eeecc----CCCCeeEEEEecCCCEEEEEECC-------------------CeEEEEEc
Q 005123 209 AIKYWQNNMN-----NV--K-ANKSA----HKESVRDLSFCRTDLKFCSCSDD-------------------TTVKVWDF 257 (713)
Q Consensus 209 ~I~vwdl~~~-----~~--~-~~~~~----~~~~V~~l~fs~dg~~Las~s~D-------------------g~I~iwDl 257 (713)
.+++.|.+.. +. + ..+.. +......++|.+|+.+.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 11 1 11211 13447789999999876654421 34555565
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
.+.+... +.........++|+++++++++-.
T Consensus 172 dg~~~e~-~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRV-VAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEE-EecCcCCCccceECCCCCEEEEcc
Confidence 5544332 322234567899999998876644
No 420
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.68 E-value=1.4 Score=48.34 Aligned_cols=220 Identities=12% Similarity=-0.012 Sum_probs=119.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCC--CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHK--ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVK 274 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~--~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~ 274 (713)
+..++++..+|.|.-.|.+++..+....... ..+.+-.+..+|+ |++++.++.++.+|.++++.+....... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 3455566788888888888888654333221 2333333333555 7788888899999998898887776555 1122
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC---CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEE
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELES 349 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~ 349 (713)
.-.+..++ .+..++.++.+...|..+++.+....... ..+..-... ....++.++. ++.+.-+|.+++..+..
T Consensus 147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 22222233 44444478999999999888876654322 111111111 2334555555 56777788888877665
Q ss_pred eecCC----CCeEEE-EEeC---CCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE---eCC
Q 005123 350 FRGHR----KDVTAL-AWHP---FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS---NDH 418 (713)
Q Consensus 350 ~~~h~----~~V~sl-~fsp---~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS---~Dg 418 (713)
.+.+. ..+... .+.. ..+.-++.++.++.+...|..++....+.... ........+++. .||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-------~~~~~~~~~~~~~~~~dG 297 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG-------GSVQGSGLYTTPVAGADG 297 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc-------cEeccCCeeEEeecCCCc
Confidence 43211 111001 1100 01122356666777777777766655444331 111222233332 477
Q ss_pred cEEEEecCC
Q 005123 419 TTKFWCRNR 427 (713)
Q Consensus 419 ~v~iWd~~~ 427 (713)
.+.++....
T Consensus 298 ~v~~~~~~~ 306 (370)
T COG1520 298 KVYIGFTDN 306 (370)
T ss_pred cEEEEEecc
Confidence 777775433
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.67 E-value=0.21 Score=59.18 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
..|..|.++++|++|+..+..|.+ |..+.. ......+......|.|-.+ .+... ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~-------------------~v~~~--~~- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTV-------------------PVDER--FF- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEE-------------------Eechh--hc-
Confidence 468889999999999988876544 433321 1111112222223322222 22111 10
Q ss_pred EccCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 005123 266 LTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 266 l~~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.......|..+.|+|. +..|++-+.|++|++||+....
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123457889999985 5788899999999999997643
No 422
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.66 E-value=1.5 Score=48.51 Aligned_cols=143 Identities=8% Similarity=0.124 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----- 345 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~----- 345 (713)
...+..++++.+++++.....++-||- +.. ...-......++++.|..++.+++++ .+|.|.+ ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 444566677777666654333333442 221 11122335568999999998877665 5565443 333333
Q ss_pred eEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe---cccCCCeEEEEEcCCCcEE-EEeCCc
Q 005123 346 ELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLL-CSNDHT 419 (713)
Q Consensus 346 ~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~l-aS~Dg~ 419 (713)
....... -...++++.|.. ++. ++.++.+|.|.+..- .++ ..... ..-...++.+.|..++... .+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D-~G~-tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTD-GGK-SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCC-CCc-ceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 2222221 123588899886 445 555567777766542 222 22222 1223568899987766555 457887
Q ss_pred EEEE
Q 005123 420 TKFW 423 (713)
Q Consensus 420 v~iW 423 (713)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
No 423
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.58 E-value=2.1 Score=49.12 Aligned_cols=248 Identities=13% Similarity=0.178 Sum_probs=125.1
Q ss_pred ccCCCEEEEEECCCcEEEEeCCCCc--eEEEEecc-CCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC--ceeeeecc
Q 005123 153 TPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAH-DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN--NVKANKSA 226 (713)
Q Consensus 153 spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h-~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~--~~~~~~~~ 226 (713)
..++.+++.+..+|.++...+.... .....-+. ....+++++..++ .+|++|++-|.=.++.+... +++..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 4567889999999999988765533 11222222 4455677776554 47888877665444444432 333333 3
Q ss_pred CCCCeeEEEEecC----CC------EEEEEE---CCCeEEEEEcCCCee--EEEEccC--CCceEEEEEcC-CCCEEEEE
Q 005123 227 HKESVRDLSFCRT----DL------KFCSCS---DDTTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHP-TKSLLVSG 288 (713)
Q Consensus 227 ~~~~V~~l~fs~d----g~------~Las~s---~Dg~I~iwDl~~~~~--~~~l~~h--~~~V~sl~~sp-dg~~L~sg 288 (713)
.-+.|.++++... .. .|++++ .+|++++..-.-+-. ....... -..++.+.... ++.+|+.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4567888888532 22 566665 367888875321111 1111111 22344444332 24577776
Q ss_pred eCCCcEEEEECC---CCceEEEE-----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEE
Q 005123 289 GKDSLVKLWDAK---SGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTA 359 (713)
Q Consensus 289 s~Dg~I~IwDl~---t~~~~~~~-----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~s 359 (713)
..+.+ +++.+. ..+.+..+ ......+.+-.+. +..++=.+.+ .|++.|....+....+... ...|.+
T Consensus 378 ~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 378 FPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp ESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred cCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 66544 444443 33443222 1112233333333 4555555544 4889998877777665433 344555
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc----cCCCeEEEEEcC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV----HDNTVWDLAWHP 408 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~----h~~~V~~l~~sp 408 (713)
.+. ++.+++.+-.++.+.++.++........... ....|.|+...|
T Consensus 454 a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 555 3466777777889999988666543333211 367788887765
No 424
>PHA03098 kelch-like protein; Provisional
Probab=96.51 E-value=0.076 Score=61.26 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeE
Q 005123 197 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEE 263 (713)
Q Consensus 197 dg~~L~sgs~DG------~I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~ 263 (713)
++..++.|+.++ .+..||..+++....-.. .......+ .-++..++.|+.+ ..+.+||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 467778776654322111 11112222 2266677777765 35777887665322
Q ss_pred E--EEccCCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 264 ~--~l~~h~~~V~sl~~spdg~~L~sgs~D------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
. .+.........+. -++++++.|+.+ ..+..||..+.+-... +....... +++ .-+++++++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCcc
Confidence 1 1111111112222 246677777632 3588899876543221 11111111 222 2256666666543
Q ss_pred --------CeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 334 --------QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 334 --------g~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
..+.+||..+.+-. ..+.........+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 23888998765432 212111111122222 46666776654 35666666443
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.50 E-value=1.9 Score=47.81 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccCCCEEEEEEcc----CC-CEEEEEeCCCcEEEEEcCCC--c---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSH----ND-NWMVSGDDGGAIKYWQNNMN--N--- 219 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~~~V~sl~~sp----dg-~~L~sgs~DG~I~vwdl~~~--~--- 219 (713)
+.+.|++|+.+|.++||+-.... ++.+ ..-+..|..|..-. .. ..||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999865433 1111 22356777776532 22 34444 45677888876311 1
Q ss_pred ----eeeeeccCCC--CeeEEEEec-----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 220 ----VKANKSAHKE--SVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 220 ----~~~~~~~~~~--~V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
.+.....|.- ....+++-+ ....|++-+.||.+.+++-+.....+.+.. .---..+.+.+.-+.|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1112222222 222333322 236788999999999999766544444432 2234467788877889999
Q ss_pred eCCCcEEEEECCC---C-----------------ceE---EEEccCCCC---eEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 289 GKDSLVKLWDAKS---G-----------------REL---CSFHGHKNM---VLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 289 s~Dg~I~IwDl~t---~-----------------~~~---~~~~~h~~~---I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+.+..|..|.... . +.+ .++. -... |..+.++.....|++-+ .+.+.+.+..
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~ 270 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN 270 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence 8888888885421 0 100 0111 1112 22333333333344443 3456666653
Q ss_pred CCeeEEEeecCCCCeEEE-EE------eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC----CCc
Q 005123 343 AMKELESFRGHRKDVTAL-AW------HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP----IGY 411 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl-~f------sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp----dg~ 411 (713)
|+.....+. +..-.++ .| .+.....++.++.++++.||.- ..++........+| +|.... +|.
T Consensus 271 -G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d---~~L~WsA~l~~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 271 -GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED---TTLVWSAQLPHVPV-ALSVANFNGLKGL 344 (418)
T ss_pred -CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC---CeEEEecCCCCCCE-EEEecccCCCCce
Confidence 544333332 2221221 11 1111235888899999999853 22222221112222 333332 444
Q ss_pred EEE-EeCCcEEEEecCCCCC
Q 005123 412 LLC-SNDHTTKFWCRNRPGD 430 (713)
Q Consensus 412 ~la-S~Dg~v~iWd~~~~~~ 430 (713)
+++ +.||.+.+--+...-.
T Consensus 345 IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEEcCCCcEEEEEeCCCCc
Confidence 443 4788888887755443
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.50 E-value=0.19 Score=56.35 Aligned_cols=148 Identities=19% Similarity=0.333 Sum_probs=91.0
Q ss_pred CCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC----CCEEEEEECCCeEEEEEcC-
Q 005123 187 HAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DLKFCSCSDDTTVKVWDFA- 258 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d----g~~Las~s~Dg~I~iwDl~- 258 (713)
..|..++|. ||+.++... .+|.+++=|. ++ .+.-+.|..++|.+- .-.|++.-....|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889998 676655432 3444443221 22 233467889999874 3346666677899999984
Q ss_pred ----CCeeEEEEccCC---C--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEE
Q 005123 259 ----RCQEERSLTGHG---W--DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVL 328 (713)
Q Consensus 259 ----~~~~~~~l~~h~---~--~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~La 328 (713)
+++.+.....+- - --..+.|+|....|++-.....-.+++++... .++.-....+.|.|.+|..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 222222211111 1 12357899998888877766555666765432 2222224677899999999998887
Q ss_pred EEEC-CCeEEEEECC
Q 005123 329 TASK-DQIIKLYDIR 342 (713)
Q Consensus 329 tgs~-Dg~I~IwDl~ 342 (713)
++-. .=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 6543 3357888854
No 427
>PRK05560 DNA gyrase subunit A; Validated
Probab=96.50 E-value=1.9 Score=52.15 Aligned_cols=253 Identities=9% Similarity=0.020 Sum_probs=133.8
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCce---------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc---CCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NMN 218 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~---------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl---~~~ 218 (713)
++-++...+++-+.+|.|+.-++.+... ...++. .+.+..+......+.|+..+..|.+..... ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455678889999999999886544321 111122 234444444445666666666787766543 221
Q ss_pred ------cee---eeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcC
Q 005123 219 ------NVK---ANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 219 ------~~~---~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~sp 280 (713)
..+ ..+.....-|..+.+.. ++.+++..+.+|.++-.++... .....+.. .+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeC
Confidence 111 11222223344444442 5678999999999988776432 22223332 34454444444
Q ss_pred CCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCC------
Q 005123 281 TKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQIIKLYDIRAM------ 344 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~s-i~fspdg~~Latgs~Dg~I~IwDl~t~------ 344 (713)
....|+..+..|.+..+.+.. |.....+.. ...|.+ +.+..++.+|+..+..|.++..++...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~ 729 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG 729 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC
Confidence 556677777788877776532 122222322 233444 344444447888889998888765321
Q ss_pred -eeEEE--eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 345 -KELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 345 -~~l~~--~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
+-+.. +....+.+..+.... ++..++..+.+|.+..+++..- .........|..+.+..+..
T Consensus 730 ~kG~~~lkl~~~~d~lv~v~~v~-~~~~v~i~T~~G~~lrf~~~eI----~~~gR~a~GVk~I~L~~~D~ 794 (805)
T PRK05560 730 GKGVITIKITEKNGKLVGALPVD-DDDEIMLITDSGKLIRTRVSEI----SITGRNTQGVRLIRLDEGDK 794 (805)
T ss_pred CCcEEeeeccCCCCeEEEEEEec-CCCeEEEEecCCeEEEEEHHHC----CccccCCCCeeeEecCCCCE
Confidence 11222 222233444443333 3445666677788777776421 11111233455566554443
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.47 E-value=0.51 Score=50.94 Aligned_cols=231 Identities=16% Similarity=0.173 Sum_probs=115.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeee----ccCCCCeeEEEEecC---CCEEEEEEC-C-------
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANK----SAHKESVRDLSFCRT---DLKFCSCSD-D------- 249 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---~~~~----~~~~~~V~~l~fs~d---g~~Las~s~-D------- 249 (713)
.-++|+|.+|+++|+ +...|.|++++ ..+.. +..+ .........++++++ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987766 46699999999 33332 2222 223456789999984 334433332 1
Q ss_pred -CeEEEEEcCCC-------eeEE-EEcc---CCCceEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCce
Q 005123 250 -TTVKVWDFARC-------QEER-SLTG---HGWDVKSVDWHPTKSLLVSGGKDSL-------------VKLWDAKSGRE 304 (713)
Q Consensus 250 -g~I~iwDl~~~-------~~~~-~l~~---h~~~V~sl~~spdg~~L~sgs~Dg~-------------I~IwDl~t~~~ 304 (713)
..|.-|.+... +.+. .+.. .......|+|.+|+.+.++.+..+. |.-.|.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444544333 1111 1111 2345677999999977666654332 2222322 110
Q ss_pred -------------EEEE-ccCCCCeEEEEEcCC-CCEEEEE-ECCCeEEEEECCCCe-----------------------
Q 005123 305 -------------LCSF-HGHKNMVLCVKWNQN-GNWVLTA-SKDQIIKLYDIRAMK----------------------- 345 (713)
Q Consensus 305 -------------~~~~-~~h~~~I~si~fspd-g~~Latg-s~Dg~I~IwDl~t~~----------------------- 345 (713)
...+ .++ .....++|++. |+++++- +.|..=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0011 111 22457899997 6655432 222222222222111
Q ss_pred ------eEEEeecCCCCeEEEEEeCC------CCCEEEEEECCCcEEEEEcCCCCceE---EEecccCCCeEEEEEcCCC
Q 005123 346 ------ELESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 346 ------~l~~~~~h~~~V~sl~fsp~------~~~~lasgs~DG~I~Iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg 410 (713)
.+..+. +...++.+.|... .+.+|++.-..+.|...+++...... .+.......+.+|++.+||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 122233 3355777777642 33466666556788888876453322 2233344589999999999
Q ss_pred cEEEEeCCcEEEE
Q 005123 411 YLLCSNDHTTKFW 423 (713)
Q Consensus 411 ~~laS~Dg~v~iW 423 (713)
.+.++.|..-+||
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 7777755444444
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.023 Score=67.27 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=89.9
Q ss_pred CeeEEEEecCCCEEEEE--ECCCeEEEEEcCCCeeEE-----------EEccCCCceEEEEEcCCC-CEEEEEeCCCcEE
Q 005123 230 SVRDLSFCRTDLKFCSC--SDDTTVKVWDFARCQEER-----------SLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVK 295 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~--s~Dg~I~iwDl~~~~~~~-----------~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~ 295 (713)
.|..+....|....++. +++-.|..||+++..... +......-..++.|+|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676554443 334478999997543221 111123346688888842 3466677889998
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~la 371 (713)
+..+........--......+|++|++.|+.+++|...|++.-|.-. ++....+.+. ...|.+|+|-. ...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEEE
Confidence 88776433332222355678999999999999999999999888754 4443333221 36799999986 445554
Q ss_pred E
Q 005123 372 S 372 (713)
Q Consensus 372 s 372 (713)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
No 430
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.28 E-value=3.8 Score=49.14 Aligned_cols=100 Identities=8% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEE---eccCCCEEEEEEccCC------CEEEEEeCCCcEEEEEcCCCceeeeec-
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHND------NWMVSGDDGGAIKYWQNNMNNVKANKS- 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l---~~h~~~V~sl~~spdg------~~L~sgs~DG~I~vwdl~~~~~~~~~~- 225 (713)
.+.|+++-++|.+..+..........+ ..-+..|.|+++.++. ++++.++.|+.++++.+.-...+..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 344556666666665544322222222 2235678899988764 679999999999999888665555442
Q ss_pred -cCCCCeeEEEEec---CC------CEEEEEECCCeEEEE
Q 005123 226 -AHKESVRDLSFCR---TD------LKFCSCSDDTTVKVW 255 (713)
Q Consensus 226 -~~~~~V~~l~fs~---dg------~~Las~s~Dg~I~iw 255 (713)
+....+.++.+-. ++ -+|.+|-.+|.+.-+
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3344444444432 22 235566666654433
No 431
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.26 E-value=2.3 Score=50.13 Aligned_cols=282 Identities=14% Similarity=0.148 Sum_probs=141.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCc----EEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe------CCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGE----FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD------DGG 208 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~----V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs------~DG 208 (713)
....+...+.++.|+++++.++..+.++. +++.+.. + .+..+...|....|+++++.++... .++
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 45567788999999999999998874332 3344443 2 3444566788889999988777621 122
Q ss_pred c-------EEEEEcCCC-c-----------eeeeeccCCCCeeEEEEecCCCEEEEEECCCe-------EEEEEcCCCee
Q 005123 209 A-------IKYWQNNMN-N-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------VKVWDFARCQE 262 (713)
Q Consensus 209 ~-------I~vwdl~~~-~-----------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~-------I~iwDl~~~~~ 262 (713)
. +.+|....+ + ...........+....++.+++.++....+.. ..+++. ....
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGE 207 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCc
Confidence 2 334433222 1 11122233445666666666676665544332 233333 2334
Q ss_pred EEEEccCCCceEEEEEcCCCCEEEEEeCC-C-------cEEEEECCCCceEEEEccCC--CCeEEEEEc-CCCCEEEEEE
Q 005123 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S-------LVKLWDAKSGRELCSFHGHK--NMVLCVKWN-QNGNWVLTAS 331 (713)
Q Consensus 263 ~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g-------~I~IwDl~t~~~~~~~~~h~--~~I~si~fs-pdg~~Latgs 331 (713)
+..+......+..+.|.++++.++..+.. . .+.++|.+.++....+...+ .....+.+. .++..++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEe
Confidence 44445555668889999998855544332 2 24444522232222111111 011111111 2233333444
Q ss_pred C-CCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCC---cEEEEEcCCCCceEEEecccCCCeEEEEE
Q 005123 332 K-DQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG---SIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (713)
Q Consensus 332 ~-Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (713)
. .+...++++..... ...+......|..+.+ +++.++++.+... .|.+++. .............+....+
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 362 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR---GEEAKLTSSNNSGLKKVKL 362 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC---CCceEEeeccccccccccc
Confidence 3 56777776653222 2333434455666665 2445555544433 5777765 1122233233344444444
Q ss_pred cCCCcE-EEEeCC-cEEEEecCCCCCc
Q 005123 407 HPIGYL-LCSNDH-TTKFWCRNRPGDT 431 (713)
Q Consensus 407 spdg~~-laS~Dg-~v~iWd~~~~~~~ 431 (713)
..-..+ +-+.|| +|.-|-+...+..
T Consensus 363 ~~~e~~~~~~~dG~~i~~~l~~P~~~~ 389 (620)
T COG1506 363 AEPEPVTYKSNDGETIHGWLYKPPGFD 389 (620)
T ss_pred CCceEEEEEcCCCCEEEEEEecCCCCC
Confidence 433333 234555 7777776554433
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.25 E-value=2.5 Score=46.78 Aligned_cols=146 Identities=8% Similarity=0.055 Sum_probs=80.1
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eE
Q 005123 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----EL 305 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-----~~ 305 (713)
...+..++|+.+++.+.....++-||-....-...-......+.++.|..++.+++++ .+|.|. |....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3345556677666665544334445432211011122334578899999888877665 556654 3334443 22
Q ss_pred EEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 306 CSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 306 ~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
..... ....+.++.|..++..++ ++.+|.|.+.. ..++.-.... .-...++.+.|.. +++ ....+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~-g~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKK-GFVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCc-eEEEeCCcEEE
Confidence 22221 223588899987776554 55677665553 4444433322 2345688999875 444 44555678776
Q ss_pred EE
Q 005123 381 HW 382 (713)
Q Consensus 381 Iw 382 (713)
.|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.12 Score=50.62 Aligned_cols=174 Identities=10% Similarity=0.088 Sum_probs=101.6
Q ss_pred CCCEEEEEeCC--CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCce
Q 005123 197 NDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDV 273 (713)
Q Consensus 197 dg~~L~sgs~D--G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V 273 (713)
++.++.+.+.- ..|++||+++++.+.........+..=-...-++++. ..-.||.-.++|.++.+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 45555555433 4699999999887765543321221111111233332 33357888899998888776665 33344
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~---~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
..++. |++.|+.++...+++.-|.++.....++.- .. ..++.+.|- ||...|-.-.+..|...|..+++.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 44543 466677776667787778776554433321 11 223444443 66666666666667777777777665
Q ss_pred Eee------------cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 349 SFR------------GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 349 ~~~------------~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.+. .+..-.+.|++.+..++++++|-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 443 23445778999886667777663
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.21 E-value=3.7 Score=49.59 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----eEEEEccCC----------CCeEEEEEcCCCCEEEEEECC
Q 005123 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGR-----ELCSFHGHK----------NMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~-----~~~~~~~h~----------~~I~si~fspdg~~Latgs~D 333 (713)
.....+|+|+| +.+.||+....|...|||+.... .+....... +.-..|.|..+-+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 45678999998 55689999999999999992111 111111111 22347889888888887765
Q ss_pred CeEEEEECCCCeeEE--EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 334 QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 334 g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
..+.++|+++..... ........|..+.-++.+..+++.-.. ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 468999999776533 122344678999888854444443332 4677777765
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.28 Score=56.32 Aligned_cols=211 Identities=11% Similarity=0.124 Sum_probs=110.3
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-E--ccCCCceEEEEEcCCCCE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-L--TGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l--~~h~~~V~sl~~spdg~~ 284 (713)
-.|+|+++. |.....+.-....+..+.|+.+.. |++...||+++||++........ . ......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457777754 333333334444888999986654 66677899999999853322211 1 2223345555554445
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEEc--CCC---CEEEEEE-CCCeEEEEECCCCe-eEEEeecCCCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWN--QNG---NWVLTAS-KDQIIKLYDIRAMK-ELESFRGHRKD 356 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fs--pdg---~~Latgs-~Dg~I~IwDl~t~~-~l~~~~~h~~~ 356 (713)
+++-..+|.|.+.+-.....++++.. ......+.+|. .++ ..|+-.. ..+ ..++-..+.. ....+..-...
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 34444455555443222222333321 11111112222 221 1111111 011 1111111111 12223222466
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
+..+..|+ +.++|+--..+|.|.+-+++.......+.......-..++|..+..++++.+..+.+..
T Consensus 219 ~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvg 285 (829)
T KOG2280|consen 219 VVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVG 285 (829)
T ss_pred EEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEc
Confidence 88889998 88999999999999999887666555544333344447888887777666666666553
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.99 Score=49.16 Aligned_cols=152 Identities=11% Similarity=0.174 Sum_probs=92.6
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce----
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---- 220 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---- 220 (713)
+.+-|. |.+.++.+...|-+.=|-.+... .+..-...++.|.+|.||+|.+.||+--.|.+|.+++....+.
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 334444 33334444444455556543321 2222233567999999999999999999999999998743322
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs--~Dg~I~Iw 297 (713)
..+.+.....|..+.|+.+ .-+|..++.| +.+|.+... ..++..+.+...|+-..|+++.+.++.++ ..+++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 1222344566899999865 4555555444 666655432 23455667788899999999877554443 34444444
Q ss_pred ECCCC
Q 005123 298 DAKSG 302 (713)
Q Consensus 298 Dl~t~ 302 (713)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44443
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.16 E-value=0.0016 Score=74.81 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=109.2
Q ss_pred eeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC--CceEEEE-----eccCCCEEEEEEcc---CCCEEEEEeCC
Q 005123 139 SLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS--FNFEMIL-----QAHDHAIRSMVWSH---NDNWMVSGDDG 207 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t--~~~~~~l-----~~h~~~V~sl~~sp---dg~~L~sgs~D 207 (713)
.+++-.+.|-.+.|-... ..++ -.-|.+.|||+.- ++....+ ......+.-|.|.+ +..++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 355667778888775422 2222 2236788998542 3332222 22233445555554 55777788888
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.|++.++++... ..+..|...+++++|...|-.++.+ +++||+.|+.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEE
Confidence 9999887765544 3345587777777665433221111 4556666666
Q ss_pred EeCCCcEEEEEC-----CCCceEEEEccCC-CCeEEEEEcCC-------CC--EEEEEE-CCCeEEEEECCCCeeEEEe-
Q 005123 288 GGKDSLVKLWDA-----KSGRELCSFHGHK-NMVLCVKWNQN-------GN--WVLTAS-KDQIIKLYDIRAMKELESF- 350 (713)
Q Consensus 288 gs~Dg~I~IwDl-----~t~~~~~~~~~h~-~~I~si~fspd-------g~--~Latgs-~Dg~I~IwDl~t~~~l~~~- 350 (713)
++.||.+++|.+ +.-+++..++.|+ ..-.|.-|+.+ +. ++++++ .+..+++|....++|+..+
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~ 332 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL 332 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc
Confidence 666665554432 2233344444443 12122112211 12 233333 4567899988877776211
Q ss_pred -------ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 351 -------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 351 -------~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
..|+..|+.+.....--..+++-+.|+.|.+|.-..
T Consensus 333 ~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 333 IDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 122222322211100011234566788899996543
No 438
>PLN02153 epithiospecifier protein
Probab=96.11 E-value=1.5 Score=47.31 Aligned_cols=184 Identities=8% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceEEEEecc---CC---CEEEEEEccCCCEEEEEeCC-----CcEEEEEcC
Q 005123 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQAH---DH---AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNN 216 (713)
Q Consensus 155 dg~~Latgs~d-------g~V~Iwd~~t~~~~~~l~~h---~~---~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~ 216 (713)
+++++++|+.+ ..+.+||..+.+....-... .. ....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555666542 35888898776543221110 10 1222333 56677777653 357788887
Q ss_pred CCceeeeecc-----CCCCeeEEEEecCCCEEEEEECC-----------CeEEEEEcCCCeeEEEEcc------CCCceE
Q 005123 217 MNNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD-----------TTVKVWDFARCQEERSLTG------HGWDVK 274 (713)
Q Consensus 217 ~~~~~~~~~~-----~~~~V~~l~fs~dg~~Las~s~D-----------g~I~iwDl~~~~~~~~l~~------h~~~V~ 274 (713)
+.+-...-.. ........+..-+++.++.|+.+ ..|.+||.++.+=.. +.. ......
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 6543221110 11111112222355666666543 247788887653221 111 111112
Q ss_pred EEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceEEEEc-c----CCCCeEEEEEcCCCCEEEEEECC---
Q 005123 275 SVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGRELCSFH-G----HKNMVLCVKWNQNGNWVLTASKD--- 333 (713)
Q Consensus 275 sl~~spdg~~L~sgs~D-------------g~I~IwDl~t~~~~~~~~-~----h~~~I~si~fspdg~~Latgs~D--- 333 (713)
.+.+ ++++++.++.+ ..|.+||+.+.+-...-. + ......++.+ ++++++.|+..
T Consensus 189 ~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~ 264 (341)
T PLN02153 189 FAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD 264 (341)
T ss_pred EEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence 2222 45665655432 458889988754332211 0 1111222223 56777777742
Q ss_pred -----------CeEEEEECCCCe
Q 005123 334 -----------QIIKLYDIRAMK 345 (713)
Q Consensus 334 -----------g~I~IwDl~t~~ 345 (713)
..|..||+.+.+
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccccEEEEEcCccE
Confidence 257788876543
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=96.08 E-value=0.22 Score=56.60 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=86.3
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeec
Q 005123 155 TGRRLITGSQSG-----EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 155 dg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~~~~~~~ 225 (713)
++..+++|+.++ .+..||..+.+....-.-. ......+. -++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455567776543 4677887765443321111 11122222 367777777754 357788876553322111
Q ss_pred cCCCCeeEEEEecCCCEEEEEECC---CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~D---g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
-...........-+++..+.|+.+ .++..||.++.+-... +.........+.+ ++++.+.| |.+.+||.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCC
Confidence 111111111222367777777654 3477888765432221 1111111222222 35555555 457789887
Q ss_pred CCceEE--EEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 301 SGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 301 t~~~~~--~~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
+.+-.. .+.........+.+ ++++.++|+.+ ..|.+||..+.
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 654322 12111222222222 66777777754 24556665543
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.05 E-value=1.4 Score=47.86 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe----cCCCE--EEEEE-CC---CeEEEEEcC--CCeeEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC----RTDLK--FCSCS-DD---TTVKVWDFA--RCQEER 264 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs----~dg~~--Las~s-~D---g~I~iwDl~--~~~~~~ 264 (713)
...+|+....++-+.+||++...+.. +. .+.++.+.+- -+++. |++++ .+ .+|++|.+. ++. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45678888888999999998665543 32 2344444432 13433 44444 32 479999775 332 33
Q ss_pred EEcc-------CCCceEEEEEc--C-CCC-EEEEEeCCCcEEEEECC---CC----ceEEEEccCCCCeEEEEEcCCCCE
Q 005123 265 SLTG-------HGWDVKSVDWH--P-TKS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 265 ~l~~-------h~~~V~sl~~s--p-dg~-~L~sgs~Dg~I~IwDl~---t~----~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
.+.. ....+..+|+. + ++. ++++..++|.+..|.+. ++ +.+++|.. .+.+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3321 22346677764 3 344 66677889988877664 33 35677763 457888888888889
Q ss_pred EEEEECCCeEEEEECCC-----CeeEEEeec--CCCCeEEEEEeC--CC-CCEEEEEECCCcEEEEEcCCCC
Q 005123 327 VLTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHP--FH-EEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t-----~~~l~~~~~--h~~~V~sl~fsp--~~-~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|+++-++.-|+-|+.+. .+.+....+ ....|-.|++-. ++ +.+|++.-.+++..||+.+...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 99999999899998862 223333322 346788887753 22 3355555567889999986543
No 441
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=96.04 E-value=3.9 Score=49.49 Aligned_cols=235 Identities=12% Similarity=0.112 Sum_probs=128.0
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCce---------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~- 216 (713)
|..-++-++...+++-+.+|.|+-.+..+... ...++. .+.+..+......+.|+..+.+|.+...+..
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677888999999999886554321 111222 3344444444556667777777877665432
Q ss_pred --CC------cee---eeeccCCCCeeEEEEe--cCCCEEEEEECCCeEEEEEcCCCee-------EEEEccCCCceEEE
Q 005123 217 --MN------NVK---ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSV 276 (713)
Q Consensus 217 --~~------~~~---~~~~~~~~~V~~l~fs--~dg~~Las~s~Dg~I~iwDl~~~~~-------~~~l~~h~~~V~sl 276 (713)
.. ..+ ..+.....-|.++.+. .++.+++..+.+|.++-.++..... ...+.. .+.+..+
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v 644 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISV 644 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEE
Confidence 21 111 1122222234444432 3556899999999999988744221 122222 3445555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---- 343 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t---- 343 (713)
........|+..+..|.+..+.+.. |.....+. ....|.++..-.++.+|+..+..|.++...+..
T Consensus 645 ~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 645 RLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 4444555677777788877665532 11122222 233455554444556788889999888876542
Q ss_pred ---CeeEEEe--ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 344 ---MKELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 344 ---~~~l~~~--~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++-+..+ ....+.+..+.... +...++..+.+|.+..+++.
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~-~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVD-DDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEec-CCCeEEEEecCCeEEEeeHh
Confidence 1222222 22234454444444 34456666778877777653
No 442
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.88 E-value=5.9 Score=47.61 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=46.7
Q ss_pred CCCceEEEEEccCC------CEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEcc---CC------CEEEEEe
Q 005123 143 NRCSINRVLWTPTG------RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH---ND------NWMVSGD 205 (713)
Q Consensus 143 H~~~V~~v~~spdg------~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~sp---dg------~~L~sgs 205 (713)
-...|.|+++.++. ++++.++.|+.++++.+....++..+. +-...+.++++-. ++ -+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 34568899998875 679999999999999988666665553 3334444444432 22 2455777
Q ss_pred CCCcEEEE
Q 005123 206 DGGAIKYW 213 (713)
Q Consensus 206 ~DG~I~vw 213 (713)
.+|.+.-+
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 77765433
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.83 E-value=2.9 Score=43.72 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=121.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcC-------CCceeeeecc-----CCCCeeEEEEecCCC------------EEE
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNN-------MNNVKANKSA-----HKESVRDLSFCRTDL------------KFC 244 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~-------~~~~~~~~~~-----~~~~V~~l~fs~dg~------------~La 244 (713)
-..|+++|.+-+.++....+...+||.+ ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999988877777778899999986 1123333321 234577777764322 267
Q ss_pred EEECCCeEEEEEcCCCee-----EEEEcc-C-CCceEEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceEE--EEccC-
Q 005123 245 SCSDDTTVKVWDFARCQE-----ERSLTG-H-GWDVKSVDWHP--TKSLLVSG-GKDSLVKLWDAKSGRELC--SFHGH- 311 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~~~~-----~~~l~~-h-~~~V~sl~~sp--dg~~L~sg-s~Dg~I~IwDl~t~~~~~--~~~~h- 311 (713)
.+++||+|.-|.-.-... +..+.. . ...-+.+++.. .+++|..+ -..++|.+||-.-.+... .+..-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998522111 122221 1 22234455543 34455444 457889999855322110 01100
Q ss_pred ---------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee--cCCCCeEEEEEeC-----CCCCE
Q 005123 312 ---------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHP-----FHEEY 369 (713)
Q Consensus 312 ---------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--~h~~~V~sl~fsp-----~~~~~ 369 (713)
.-.|+-..-.++++.=+.+..-|.|-+||+. ++.++.+. +.-..-+.|+..| ..+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0001111111222222233445789999987 77777663 2223445666544 34677
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccC-----CCeEEEEEcC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHD-----NTVWDLAWHP 408 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-----~~V~~l~~sp 408 (713)
|+---.||+|.+||..++.-+-.+..... ..+|.|.|-.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77767799999999877664444433222 3456777754
No 444
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.83 E-value=1.1 Score=47.95 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCce---eeeeccCCCCe--eEEEEecCCCEEEEEEC-----CCeEEEEEcCCCe
Q 005123 197 NDNWMVSGDDG-----GAIKYWQNNMNNV---KANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQ 261 (713)
Q Consensus 197 dg~~L~sgs~D-----G~I~vwdl~~~~~---~~~~~~~~~~V--~~l~fs~dg~~Las~s~-----Dg~I~iwDl~~~~ 261 (713)
++.+++.|+.+ ..+..+|+.+.+. ...+....... .+++. -+++.++.++. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777754 3466667666542 11111111111 12222 25566666654 2468888887653
Q ss_pred eEE--EEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 005123 262 EER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGR 303 (713)
Q Consensus 262 ~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~ 303 (713)
-.. .+... ......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 222 12111 1112222223467777777654 35688888654
No 445
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.79 E-value=2.6 Score=48.86 Aligned_cols=160 Identities=9% Similarity=0.023 Sum_probs=90.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEcc-CCC------CeEEEEEcCCCCEEEEEEC-C---Ce
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHG-HKN------MVLCVKWNQNGNWVLTASK-D---QI 335 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~-h~~------~I~si~fspdg~~Latgs~-D---g~ 335 (713)
-.+.|..|.|..+++.+++...+|.|.+||...+.. +..+.. +.. .|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 357899999999999999999999999999933221 111211 111 1111111112345555444 3 25
Q ss_pred EEEEECC-CCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-----cccCCCeEEEEE
Q 005123 336 IKLYDIR-AMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-----NVHDNTVWDLAW 406 (713)
Q Consensus 336 I~IwDl~-t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-----~~h~~~V~~l~~ 406 (713)
.+++.+. +...+.++. .+........|+-..|.+..- .+++|.+|++..-.....+. ......+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 7777771 122222222 222233333444334554444 67799999996554322221 111134556665
Q ss_pred cCCCcEEEEeCCcEEEEecCCCCC
Q 005123 407 HPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 407 spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
-...++|.+.++.|.+.|+.-...
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~si 309 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFESI 309 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhhhh
Confidence 556688889999999999854443
No 446
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.78 E-value=0.68 Score=51.79 Aligned_cols=268 Identities=12% Similarity=0.051 Sum_probs=132.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
...|.++.+.-+| .|.+|+.|| +..||..+++....-..-. ..|..+..+-.+ .|.+|+.+| |.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888887 477788887 7778877777665443332 556665555444 456666666 6666555422221
Q ss_pred eec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccC--CCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 223 NKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGH--GWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 223 ~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h--~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
... .....|..+.-..+| .+-.|+++|..+. ...+... ....+.+ -+.|.++..+.+|. |.+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 111 122334444333333 3555665554332 2222222 1111112 24567777776765 67777777666544
Q ss_pred CCCCceEEEEccCCCCe-EEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEEEEEE
Q 005123 299 AKSGRELCSFHGHKNMV-LCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I-~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs 374 (713)
.. ......+...++.+ -.++.++ .+..+-...+.+.+.+-+-.++..+..... -...|+.+++.. ++.+ -.++
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~l-Wlgs 393 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRL-WLGS 393 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcE-EEEe
Confidence 32 22222222221111 1111111 222222333334455555556665544322 235577777765 4444 4444
Q ss_pred CCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcE-EEEeCCcEE
Q 005123 375 LDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYL-LCSNDHTTK 421 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~-laS~Dg~v~ 421 (713)
...-+..|+.++...... ......++|..|.-.+++.+ |.+.+|.++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk 442 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVK 442 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEe
Confidence 444455566554222222 22223567877877777754 444555554
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.81 Score=52.78 Aligned_cols=194 Identities=10% Similarity=0.109 Sum_probs=102.8
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---eccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~---~~~~~~~V~~l~fs~dg~~ 242 (713)
-.|+||+... ..+..+.-....+..+.|+.+ ..|++...+|+++||++-....... .......|..+.|..+|
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 3578888654 344443333447889999955 5566678899999999764433221 12233456666665555
Q ss_pred EEEEECCCeEEEEEcCCCeeEEEEcc-CCCce--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCC-ceEEEEccCCCC
Q 005123 243 FCSCSDDTTVKVWDFARCQEERSLTG-HGWDV--KSVDWHPTKS---LLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNM 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V--~sl~~spdg~---~L~sgs-~Dg~I~IwDl~t~-~~~~~~~~h~~~ 314 (713)
+++-..+|.|.+.+-.....+.++.. ..... +|-+...++. .++-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 33334455555543222222222221 11111 2222222211 111111 011 111211111 112223323466
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeC
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHP 364 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp 364 (713)
+..++.|++.++|+.-+.+|.|.+-+.+..+++.++.... ..-..++|.-
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 8889999999999999999999999998888877776322 1223566654
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=95.69 E-value=0.45 Score=54.13 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=85.7
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--CeEEEEEcCCCeeEE--EEc
Q 005123 197 NDNWMVSGDDGG-----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEER--SLT 267 (713)
Q Consensus 197 dg~~L~sgs~DG-----~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--g~I~iwDl~~~~~~~--~l~ 267 (713)
++.++++|+.++ .+..||..+++-...-.-...........-++...++|+.+ .++..||..+.+-.. .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455566776543 46677777654322211111111111122366677777653 357888876543221 121
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 268 GHGWDVKSVDWHPTKSLLVSGGKDS---LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 268 ~h~~~V~sl~~spdg~~L~sgs~Dg---~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
........+.+ ++++.+.|+.++ .+..||.++.+-... ..........++ -++++.+.| |.+.+||.+
T Consensus 351 ~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 351 KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence 11112222333 477777777543 477888876543221 111111122222 256666666 357788887
Q ss_pred CCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCC
Q 005123 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGH 386 (713)
Q Consensus 343 t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~ 386 (713)
+.+- +..+.........+.+ ++.+++.|+.+ ..|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCC
Confidence 5432 2222211222223332 56778887754 2355565543
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.16 Score=55.79 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=92.6
Q ss_pred cCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEcCC-Cceeeee
Q 005123 154 PTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-------WMVSGDDGGAIKYWQNNM-NNVKANK 224 (713)
Q Consensus 154 pdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-------~L~sgs~DG~I~vwdl~~-~~~~~~~ 224 (713)
.|.++|+ .|.....++-.|++.++.+.....|... -|.|.|+.+ .-++|-.+..|.-.|-+- ++.+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v- 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV- 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-
Confidence 3445544 4455567888899999999999887766 466776432 223344444454445432 222111
Q ss_pred ccCCCCeeEEEEec----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 225 SAHKESVRDLSFCR----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 225 ~~~~~~V~~l~fs~----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
...+..++.-.|+. ...+|++++..|.|++||--.......+.+....|..|..+.+|++|++.|. ..|.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 12223333333332 4568999999999999996554455566677889999999999999888876 667788875
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.61 E-value=0.65 Score=52.24 Aligned_cols=175 Identities=11% Similarity=0.137 Sum_probs=98.6
Q ss_pred CCeeEEEEecCCCEEEEEE---CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC----CCEEEEEeCCCcEEEEECC-
Q 005123 229 ESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----KSLLVSGGKDSLVKLWDAK- 300 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd----g~~L~sgs~Dg~I~IwDl~- 300 (713)
..|..++|. ||+.++... .+|.+++=| .+.+ +.-..|..++|.|- .-.|++.--...|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889997 565544332 233333322 1222 23346889999984 2244444556889999875
Q ss_pred ----CCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 301 ----SGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 301 ----t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.+.+..-..+ .---..+.|+|....|++-+....-.+++++... .++.-....+.|.|.+|..|+.+++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22222221111 1112456799999888887766655667765332 2322224567899999999666666
Q ss_pred EEEECCCcEEEEEcCCCCce---E-EEecccCCCeEEEEEcCCCcE
Q 005123 371 VSGSLDGSIFHWLVGHETPQ---V-EIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~---~-~~~~~h~~~V~~l~~spdg~~ 412 (713)
++.+..=.-+|||-..+... . -++ .-.+.|.+|.-.-|..+
T Consensus 172 VAvGSsLHSyiWd~~qKtL~~CsfcPVF-dv~~~Icsi~AT~dsqV 216 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTLHRCSFCPVF-DVGGYICSIEATVDSQV 216 (671)
T ss_pred EEeCCeEEEEEecCchhhhhhCCcceee-cCCCceEEEEEeccceE
Confidence 66666667889986433211 0 111 12345666655555533
No 451
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.55 E-value=1.7 Score=47.78 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCC-----------cEEEEEcCCCceeeeeccCCCCee-EEEEe-cCCCEEEEEECC
Q 005123 197 NDNWMVSGDDGG-----------AIKYWQNNMNNVKANKSAHKESVR-DLSFC-RTDLKFCSCSDD 249 (713)
Q Consensus 197 dg~~L~sgs~DG-----------~I~vwdl~~~~~~~~~~~~~~~V~-~l~fs-~dg~~Las~s~D 249 (713)
++++++.|+.+. .+..||..++.-...-........ ..+.. -++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566777776532 466778766543322111111111 11222 366777776653
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.55 E-value=2.3 Score=46.02 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEEcCCCceeeeeccCCCCeeEE-EE-ecCCCEEEEEECC
Q 005123 197 NDNWMVSGDDG-----------GAIKYWQNNMNNVKANKSAHKESVRDL-SF-CRTDLKFCSCSDD 249 (713)
Q Consensus 197 dg~~L~sgs~D-----------G~I~vwdl~~~~~~~~~~~~~~~V~~l-~f-s~dg~~Las~s~D 249 (713)
++++.+.|+.+ ..+..||..+++-.............. .. .-+++.++.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 66777777753 246677877654332211111111111 11 2367777777653
No 453
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.54 E-value=3.7 Score=47.69 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE--EEcc-CC------CceEEEEEcCCCCEEEEEeC-C---Cc
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTG-HG------WDVKSVDWHPTKSLLVSGGK-D---SL 293 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~--~l~~-h~------~~V~sl~~spdg~~L~sgs~-D---g~ 293 (713)
.++.|.++.|..+++.+++...+|.|.+||........ .+.. +. .-|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 46789999999999999999999999999993322211 1111 11 11222221122344444443 2 23
Q ss_pred EEEEECC-CCceEEEEc---cCCCCe--EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-----C-CCeEEEE
Q 005123 294 VKLWDAK-SGRELCSFH---GHKNMV--LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-----R-KDVTALA 361 (713)
Q Consensus 294 I~IwDl~-t~~~~~~~~---~h~~~I--~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-----~-~~V~sl~ 361 (713)
++++.+. +...+..+. .+.... ..+++. +|.+... .+++|.+|++-..+...++... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222221 122222 233333 4544333 6789999999888766655422 1 2333433
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceE
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~ 391 (713)
- +..++.|++ .+..|++.|+.....+.
T Consensus 285 ~-~s~nRvLLs--~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 285 P-PSPNRVLLS--VNNKIYLLDLKFESILS 311 (670)
T ss_pred c-CCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence 2 213444443 35589999986554433
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=2.4 Score=52.41 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=55.6
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.....++|++...++|.++.+|.|++|....-+.......-.. .+..+.|......+.+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4567889999999999999999999997654333222111110 22222222222233333445556666544332222
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
....+++....+--.. +.+ .++.+++||+.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 1222332222111122 334 77788888864
No 455
>PRK05560 DNA gyrase subunit A; Validated
Probab=95.47 E-value=4.5 Score=48.98 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=114.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC---CC------ceE---EEEeccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ---SF------NFE---MILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---t~------~~~---~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I 210 (713)
+.+..+......+.|+..+.+|.++..... .. ..+ ..+...+.-|.++.+.. +...+++.+.+|.+
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 455566666667778888888887776432 21 111 11222233455555552 56789999999999
Q ss_pred EEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceE
Q 005123 211 KYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVK 274 (713)
Q Consensus 211 ~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~ 274 (713)
+--++..- .....+. ..+.+..+..+.....|+..+..|.+..+.+.. +.....+.. ...|.
T Consensus 617 KRi~l~~~~~~~r~G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv 694 (805)
T PRK05560 617 KKTSLSEFSNIRSNGIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVV 694 (805)
T ss_pred EEEEhHHhhhcccCCceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEE
Confidence 87765432 1222223 234555555555666777778888777776532 112222322 23344
Q ss_pred E-EEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 275 S-VDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 275 s-l~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
+ +.+..++..++..+..|.++..++.. ++-+.. +......+..+....+...++..+.+|.+..+++..
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e- 773 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE- 773 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH-
Confidence 4 34443334688888889888776532 111222 222223444433333334566667777777776643
Q ss_pred eeEEEeecCCCCeEEEEEe
Q 005123 345 KELESFRGHRKDVTALAWH 363 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fs 363 (713)
+.........|..+.+.
T Consensus 774 --I~~~gR~a~GVk~I~L~ 790 (805)
T PRK05560 774 --ISITGRNTQGVRLIRLD 790 (805)
T ss_pred --CCccccCCCCeeeEecC
Confidence 22222223345555554
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.26 Score=54.15 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC--------CEEEEEECCCeEEEEEcCC-CeeEEEE
Q 005123 197 NDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--------LKFCSCSDDTTVKVWDFAR-CQEERSL 266 (713)
Q Consensus 197 dg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg--------~~Las~s~Dg~I~iwDl~~-~~~~~~l 266 (713)
|.++|+ .+.....++-.|++.++++.....+..- -+.|.++. ..|+ |-.+..|.-.|-+- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 444444 4555567777789999998888766654 45666543 2343 44444555555432 2222211
Q ss_pred c----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 267 T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 267 ~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
. .......|..-. ...++++++..|.|++||--.-+....+.+....|..|..+.+|++|++.|. .+|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1 112223333333 3458999999999999996544444456667788999999999999887764 578888875
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.39 E-value=0.019 Score=66.43 Aligned_cols=190 Identities=11% Similarity=0.169 Sum_probs=110.0
Q ss_pred CCcEEEEeCCCCc-eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC--Cceee-----eeccCCCCeeEEE
Q 005123 165 SGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKA-----NKSAHKESVRDLS 235 (713)
Q Consensus 165 dg~V~Iwd~~t~~-~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~--~~~~~-----~~~~~~~~V~~l~ 235 (713)
.+-|++-|..+.- ....+++..+.|-.+.|.... ..++ ..-|.+.|||++- |++.. ........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 3456666655432 123345667788888885422 2222 3347788998753 33222 2222334455566
Q ss_pred Eec---CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC
Q 005123 236 FCR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 236 fs~---dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
|++ +..+++.+..+++|++..+++... ..+++|...+..++|...|-.++.+
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------ 242 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------ 242 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------
Confidence 654 567777888888888887765433 3445588888887776544322221
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEC-----CCCeeEEEeecCCC-CeEEEEEeCCCC---------CEEEEEEC-C
Q 005123 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDI-----RAMKELESFRGHRK-DVTALAWHPFHE---------EYFVSGSL-D 376 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs~Dg~I~IwDl-----~t~~~l~~~~~h~~-~V~sl~fsp~~~---------~~lasgs~-D 376 (713)
+|+||+.|++++.||.+++|.+ +.-++++.++.|++ .-.|.-|+. .. .+++++++ +
T Consensus 243 -------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~n 314 (1283)
T KOG1916|consen 243 -------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVN 314 (1283)
T ss_pred -------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCC
Confidence 7889999999999988777754 33445666666663 222222332 11 13444444 4
Q ss_pred CcEEEEEcCCCCc
Q 005123 377 GSIFHWLVGHETP 389 (713)
Q Consensus 377 G~I~Iwd~~~~~~ 389 (713)
..+++|....-.+
T Consensus 315 re~k~w~~a~w~C 327 (1283)
T KOG1916|consen 315 REEKFWAEAPWQC 327 (1283)
T ss_pred cceeEeeccchhh
Confidence 4588887654443
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=2.2 Score=46.60 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=92.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCC--c-eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMN--N-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---- 263 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~--~-~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~---- 263 (713)
.+-|. |.+.++.+...|.+.-|.+... . .+..-....+.|.+|.|+.|++.||+--.|++|.+++....+..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34444 4444444445566666655432 2 22222345669999999999999999999999999987322221
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYD 340 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwD 340 (713)
.+.+.....|....|+.+ .-++..+..| +.+|.+.. .+.++..+.++..|+...|.++-+.++.++ ..+++.=+-
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 122233456889999865 4455555434 77776544 334555666778888889988877655444 334444444
Q ss_pred CCCC
Q 005123 341 IRAM 344 (713)
Q Consensus 341 l~t~ 344 (713)
++++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 4443
No 459
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.38 E-value=0.4 Score=55.43 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=80.0
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcC
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.......+-+.-|.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|... ++..+++.+....|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333445555555555544454455689999999876433222 34678999999642 56788888889999998541
Q ss_pred -----CCC---ceEE-E-ecccC-CCeEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 386 -----HET---PQVE-I-HNVHD-NTVWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 386 -----~~~---~~~~-~-~~~h~-~~V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
... ..++ + ...++ ..|.+..|..+|.++++.++.+.|++....
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 111 1111 1 12233 679999999999999999999999986544
No 460
>PLN02193 nitrile-specifier protein
Probab=95.34 E-value=3.1 Score=47.27 Aligned_cols=187 Identities=8% Similarity=-0.012 Sum_probs=89.7
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceEEEEec--cCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q 005123 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQA--HDH--AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (713)
Q Consensus 155 dg~~Latgs~d-------g~V~Iwd~~t~~~~~~l~~--h~~--~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~ 218 (713)
++.+++.|+.+ ..+.+||+.+.+....-.. ... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2477888877554321110 000 11111122255666677654 35778888776
Q ss_pred ceeeeecc---CCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCCCCEE
Q 005123 219 NVKANKSA---HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 219 ~~~~~~~~---~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spdg~~L 285 (713)
+-...... ........+..-++++++.++.+ ..+.+||+.+.+-...-. ........+.+ +++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEE
Confidence 43321111 01111111122355566666543 346778877654321110 01111222222 46777
Q ss_pred EEEeCC----CcEEEEECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005123 286 VSGGKD----SLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (713)
Q Consensus 286 ~sgs~D----g~I~IwDl~t~~~~~~~~~-----h~~~I~si~fspdg~~Latgs~D--------------g~I~IwDl~ 342 (713)
+.++.+ ..|.+||+.+.+-...-.. ......++.+ ++++++.|+.+ ..+.+||+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 777655 4589999987654322110 1111222222 56777777743 247888887
Q ss_pred CCe
Q 005123 343 AMK 345 (713)
Q Consensus 343 t~~ 345 (713)
+.+
T Consensus 411 t~~ 413 (470)
T PLN02193 411 TLQ 413 (470)
T ss_pred cCE
Confidence 654
No 461
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=95.33 E-value=6.6 Score=47.54 Aligned_cols=197 Identities=10% Similarity=0.014 Sum_probs=109.8
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---------ceE---EEEeccCCCEEEEEEc--cCCCEEEEEeCCCc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------NFE---MILQAHDHAIRSMVWS--HNDNWMVSGDDGGA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---------~~~---~~l~~h~~~V~sl~~s--pdg~~L~sgs~DG~ 209 (713)
.+.+..+......+.|+..+.+|.++..+.... ..+ ..+...+.-|.++... .++.+++..+.+|.
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy 613 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV 613 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE
Confidence 345666666667777888888888877653221 111 1122223345555542 25568899999999
Q ss_pred EEEEEcCCCce-------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCce
Q 005123 210 IKYWQNNMNNV-------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDV 273 (713)
Q Consensus 210 I~vwdl~~~~~-------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V 273 (713)
++-.++..-.. ...+.. .+.+..+..+.....++..+..|.+..+.+.. +.....+. ....|
T Consensus 614 iKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~V 691 (800)
T TIGR01063 614 VKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFV 691 (800)
T ss_pred EEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEE
Confidence 99887653221 112222 34555555555666677777888777666532 11222222 23345
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.++....++..|+..+..|.++...+.. ++-+..+ ......+..+....+...++..+.+|.+..+++.
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 5555444555788888889888776532 1222222 2222344444444444456666777777666654
No 462
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.31 E-value=4.7 Score=42.59 Aligned_cols=161 Identities=12% Similarity=0.160 Sum_probs=91.9
Q ss_pred eEEEEEcCCCeeEEEEcc------CCCceEEEEEcCCC-----CEEEEEe-CCCcEEEEECCCCceEEEEccC-------
Q 005123 251 TVKVWDFARCQEERSLTG------HGWDVKSVDWHPTK-----SLLVSGG-KDSLVKLWDAKSGRELCSFHGH------- 311 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~------h~~~V~sl~~spdg-----~~L~sgs-~Dg~I~IwDl~t~~~~~~~~~h------- 311 (713)
+|.+||+++.+.++++.- ..+.+..+.+.... .++..+. ..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688889988888777642 24567788887632 2333333 3357999999998776655422
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-----Ce---------eEEEeecCCCCeEEEEE
Q 005123 312 ------------KNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRA-----MK---------ELESFRGHRKDVTALAW 362 (713)
Q Consensus 312 ------------~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t-----~~---------~l~~~~~h~~~V~sl~f 362 (713)
...+..++.++ ++++|+.....+ .++|.+.+ .. .+..+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12366667665 667777766544 23333321 10 11222111235567788
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEeccc--CCCeEEEEEcC--CCcEE
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVH--DNTVWDLAWHP--IGYLL 413 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h--~~~V~~l~~sp--dg~~l 413 (713)
++ ++.++++--..+.|..|+..... ....+.... -..+.++++.. ++.+.
T Consensus 194 D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~ 250 (287)
T PF03022_consen 194 DP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLW 250 (287)
T ss_dssp ET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EE
T ss_pred CC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEE
Confidence 88 78889999999999999987622 111122211 24567888888 65443
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.29 E-value=4.2 Score=41.88 Aligned_cols=222 Identities=10% Similarity=0.022 Sum_probs=131.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE-E-
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-S- 265 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~-~- 265 (713)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-+|-++.+..+ .
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44567788899888888888888888988998877766667777788888888776664433 45555655543322 1
Q ss_pred -EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 266 -l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.-....+...|++.|++-+++.. |.---.|-.+ ..+..+.. ....-+.|+..+||+..++.-.+..|-..|-.+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456788999999988777753 2211112111 12222221 233457788899999888877788888888776
Q ss_pred CeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 344 MKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 344 ~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
+.. .++. ........+--++ -++..++....+.+.-||-....-..-.+-+....-.++..+..+++-.
T Consensus 220 ~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 220 GHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred CCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 522 2221 1122233443344 5777777777777877776443311112222233344444544444433
No 464
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=4.5 Score=48.63 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=35.6
Q ss_pred EEccCCCEEEEEEC---------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 151 LWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 151 ~~spdg~~Latgs~---------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
.+++|.++++++.. .+...+|++.++..........+.+.++.|++.++.|+-.-.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 66677776666543 345677777777622222223455789999999977776543
No 465
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.19 E-value=0.066 Score=39.91 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 174 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~ 174 (713)
...|.+++|+|..++||+++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.04 E-value=6.1 Score=42.49 Aligned_cols=142 Identities=9% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCc------EEEEEcCCC----ceee-----eeccC--------CCCeeEEEEecCCCEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGA------IKYWQNNMN----NVKA-----NKSAH--------KESVRDLSFCRTDLKF 243 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~------I~vwdl~~~----~~~~-----~~~~~--------~~~V~~l~fs~dg~~L 243 (713)
+.++.|.+.+++..+++.+++|. +..+++... ..+. .+... .....+|++..++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55778888865666666666666 555554431 0000 01111 1145678887778777
Q ss_pred EEEECC------CeEEEEEcCCCeeEEEEc---------------cCCCceEEEEEcCCCCEEEEEeCC-----C--c--
Q 005123 244 CSCSDD------TTVKVWDFARCQEERSLT---------------GHGWDVKSVDWHPTKSLLVSGGKD-----S--L-- 293 (713)
Q Consensus 244 as~s~D------g~I~iwDl~~~~~~~~l~---------------~h~~~V~sl~~spdg~~L~sgs~D-----g--~-- 293 (713)
++.-.+ ..|+.+|.. ++.+..+. .....+.+|+++++++.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 678888865 44433331 134568899999999977776542 2 1
Q ss_pred -----EEE--EECCC-CceEE----EEcc-----CCCCeEEEEEcCCCCEEEE
Q 005123 294 -----VKL--WDAKS-GRELC----SFHG-----HKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 294 -----I~I--wDl~t-~~~~~----~~~~-----h~~~I~si~fspdg~~Lat 329 (713)
++| ||..+ ++... .+.. ....|+.+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45544 22222 2222 3567889999999887664
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.88 E-value=0.92 Score=53.02 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCeEEEEEcCC-------C----e---------eEEEEccCCCceEEEEEc--CCCCEEEEEeCCCcEEE
Q 005123 239 TDLKFCSCSDDTTVKVWDFAR-------C----Q---------EERSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~-------~----~---------~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~Dg~I~I 296 (713)
+...|+.|.+||.|.+|.+++ . + ....+. ....+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 456788888899999996521 0 0 111222 34578899998 77788888888888887
Q ss_pred EECCC--CceEE-EEccCCCCeEEEEEcCCC---C---EEEEEECCCeEEEEEC
Q 005123 297 WDAKS--GRELC-SFHGHKNMVLCVKWNQNG---N---WVLTASKDQIIKLYDI 341 (713)
Q Consensus 297 wDl~t--~~~~~-~~~~h~~~I~si~fspdg---~---~Latgs~Dg~I~IwDl 341 (713)
|-... .+... .-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75433 11111 111256678999997643 2 7888999999999888
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.87 E-value=0.18 Score=54.58 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=102.3
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-EEE-ccCCC----CeE-EEEEcCCCCEEEEEECCCeEE
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSF-HGHKN----MVL-CVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~-~~~-~~h~~----~I~-si~fspdg~~Latgs~Dg~I~ 337 (713)
.+......|..+-+.||+++|.+-+. .++.|+++.+.... +++ ....+ .|+ .+..-..|..|++++.||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34445567888999999998887765 77889988753321 122 11111 122 122233567788899999887
Q ss_pred EE-ECCCC-----eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 338 LY-DIRAM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 338 Iw-Dl~t~-----~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
-| |++.. ..++.++-....+..+.-.. +.+-+++-+.+|++.++.....+...... --..+.-+++|+++.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcccc
Confidence 76 55532 22334443334555554433 56678888999999988764444332221 123567789999998
Q ss_pred EEEE-eCCcEEEEecCCCCC
Q 005123 412 LLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 412 ~laS-~Dg~v~iWd~~~~~~ 430 (713)
.+.+ +.+.++++.++....
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 8888 779999999876543
No 469
>PLN02153 epithiospecifier protein
Probab=94.84 E-value=2.9 Score=45.23 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCeeEE--EEcc---CCCc-eEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 005123 239 TDLKFCSCSDD-----TTVKVWDFARCQEER--SLTG---HGWD-VKSVDWHPTKSLLVSGGKD-----------SLVKL 296 (713)
Q Consensus 239 dg~~Las~s~D-----g~I~iwDl~~~~~~~--~l~~---h~~~-V~sl~~spdg~~L~sgs~D-----------g~I~I 296 (713)
++++++.|+.+ ..|.+||..+.+-.. .+.. .... -.+++. -++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45566666543 357888887654322 1110 1111 112222 245667777653 24778
Q ss_pred EECCCCc
Q 005123 297 WDAKSGR 303 (713)
Q Consensus 297 wDl~t~~ 303 (713)
||.++.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=2.1 Score=50.81 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.-.|..|.++++|++||..+..|. .|-.+.. ......+.+....|.|=.+.-+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence 347999999999999999988764 4443321 11111222222233322222111111
Q ss_pred eeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCC
Q 005123 223 NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~ 259 (713)
.......|..+.|+|. +..|++-+.|++||+||+.+
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123445667777764 46777778888888888854
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=1 Score=44.34 Aligned_cols=172 Identities=10% Similarity=0.071 Sum_probs=98.6
Q ss_pred CCCEEEEEEC--CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCe
Q 005123 155 TGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESV 231 (713)
Q Consensus 155 dg~~Latgs~--dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V 231 (713)
+|.++.+.+. ...|++||+.+++.+.........+..=-...-++++ +..-.+|.-.++|.++.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 3444444433 3569999999988776654332122111111113333 3445678888899888777665532 2333
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--C---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--H---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h---~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
+.++ .|++.|+.++...+++.-|-++.....++.. . -..++.+.|- +|...+-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4443 4666677777667787777665444333221 1 1234555554 56666655566667777777777665
Q ss_pred EEc------------cCCCCeEEEEEcCCCC-EEEEE
Q 005123 307 SFH------------GHKNMVLCVKWNQNGN-WVLTA 330 (713)
Q Consensus 307 ~~~------------~h~~~I~si~fspdg~-~Latg 330 (713)
.+. .+.+..+.|++.+++. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 543 2445678889988764 44444
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.77 E-value=5.5 Score=42.02 Aligned_cols=185 Identities=10% Similarity=0.108 Sum_probs=100.5
Q ss_pred ceEEEEEccCCCEEEE--EEC----------CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCC-----CEEE
Q 005123 146 SINRVLWTPTGRRLIT--GSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHND-----NWMV 202 (713)
Q Consensus 146 ~V~~v~~spdg~~Lat--gs~----------dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg-----~~L~ 202 (713)
+|..+....++++-+. |.- .-+|.+||+.+.+.++++... .+.+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3667777777754443 211 126899999999998887643 3567778776522 3444
Q ss_pred EEeC-CCcEEEEEcCCCceeeeeccCC-------------------CCeeEEEEec---CCCEEEEEECCC-eEEEEEc-
Q 005123 203 SGDD-GGAIKYWQNNMNNVKANKSAHK-------------------ESVRDLSFCR---TDLKFCSCSDDT-TVKVWDF- 257 (713)
Q Consensus 203 sgs~-DG~I~vwdl~~~~~~~~~~~~~-------------------~~V~~l~fs~---dg~~Las~s~Dg-~I~iwDl- 257 (713)
.+.. .+-|.|+|+.+++..+.+..+. ..+..++.++ +++.|+-..-.+ +++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 4443 3689999999887665543211 1244444443 444444443322 1222211
Q ss_pred --CCCe---------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEE-c-cC-CCCeEEEEE
Q 005123 258 --ARCQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSF-H-GH-KNMVLCVKW 320 (713)
Q Consensus 258 --~~~~---------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~-~-~h-~~~I~si~f 320 (713)
++.. .+..+-........++++++|.++++--..+.|..||.++.- ....+ . .. -.++..+++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 1100 111221112356678888889888888889999999988611 12222 1 12 357888999
Q ss_pred cC--CCCEEEEE
Q 005123 321 NQ--NGNWVLTA 330 (713)
Q Consensus 321 sp--dg~~Latg 330 (713)
.. +|.+.+.+
T Consensus 242 ~~~~~g~L~v~s 253 (287)
T PF03022_consen 242 DPEGDGYLWVLS 253 (287)
T ss_dssp -T--TS-EEEEE
T ss_pred ccccCceEEEEE
Confidence 88 66655554
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.71 E-value=8 Score=42.22 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=110.1
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEc----cCCCE--EE-EEeCC---CcEEEEEcCC--Ccee
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS----HNDNW--MV-SGDDG---GAIKYWQNNM--NNVK 221 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s----pdg~~--L~-sgs~D---G~I~vwdl~~--~~~~ 221 (713)
|...+|+....++-+.+||+... .+..+. .+.++.|..- -+++. |+ ++.++ ..|++|.+.. +.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 34567778888889999999854 444443 2344444332 13432 33 44443 4699997763 3332
Q ss_pred eee------ccCCCCeeEEEEec---CCC-EEEEEECCCeEEEEEcC---CC----eeEEEEccCCCceEEEEEcCCCCE
Q 005123 222 ANK------SAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 222 ~~~------~~~~~~V~~l~fs~---dg~-~Las~s~Dg~I~iwDl~---~~----~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
... ......+..+|+-. ++. ++++...+|.+..|.+. ++ +.++.|. -...+..+..+....+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEecccCC
Confidence 211 11223467777743 343 56677889998888773 22 3466665 3457899999988889
Q ss_pred EEEEeCCCcEEEEECCC-----CceEEEEcc--CCCCeEEEEEcC--CC-CEEEEEE-CCCeEEEEECCC-CeeEEEe
Q 005123 285 LVSGGKDSLVKLWDAKS-----GRELCSFHG--HKNMVLCVKWNQ--NG-NWVLTAS-KDQIIKLYDIRA-MKELESF 350 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t-----~~~~~~~~~--h~~~I~si~fsp--dg-~~Latgs-~Dg~I~IwDl~t-~~~l~~~ 350 (713)
|+++-++.-|.-|+.+- ++.+....+ ....|-.|++-. ++ .||++++ .+++..|||.+. ...+..|
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 99999998888888762 122222222 345677777643 33 3565555 567899999874 2334444
No 474
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.70 E-value=0.46 Score=55.01 Aligned_cols=226 Identities=17% Similarity=0.193 Sum_probs=107.5
Q ss_pred EEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-
Q 005123 190 RSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL- 266 (713)
Q Consensus 190 ~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l- 266 (713)
.++-.+..|...++| +..|.+-+=|..+.-.-+...+ ....|.+|+.+.+...+++ .+|.|+-|-++....+...
T Consensus 188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT--~~g~Vys~GlN~~hqLG~~~ 265 (1267)
T KOG0783|consen 188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQLGLSN 265 (1267)
T ss_pred eeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEe--ecceEEEeecCcccccCCcC
Confidence 344445455533333 2345555544443322222233 3456888888877665554 6889999987653322111
Q ss_pred ----------------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--------E---EEccCCCCeEEE-
Q 005123 267 ----------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--------C---SFHGHKNMVLCV- 318 (713)
Q Consensus 267 ----------------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~--------~---~~~~h~~~I~si- 318 (713)
++.. .|..++- |+.--++-.|..|+.|-++.|+.- . .+.+....|.-+
T Consensus 266 ~~~~~~~p~qI~a~r~kg~~-~iIgvaA---g~~hsVawt~~~VY~wGlN~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~ 341 (1267)
T KOG0783|consen 266 DELKKDDPIQITARRIKGFK-QIIGVAA---GKSHSVAWTDTDVYSWGLNNGQLGISDNISVVTTPRRLAGLLSPVIHVV 341 (1267)
T ss_pred chhhcCchhhhhhHhhcchh-hhhhhhc---ccceeeeeecceEEEecccCceecCCCCCceeecchhhcccccceEEEE
Confidence 1111 2222221 222223334566888888766532 0 111111122211
Q ss_pred -------EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 319 -------KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 319 -------~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
++..++..++.+.....+.-++...++.+....+|-..-+ .+.=.-.....|+.-..-|.|+.|+-.+....
T Consensus 342 a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~ 421 (1267)
T KOG0783|consen 342 ATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT 421 (1267)
T ss_pred ecCccEEEEecCCcEEEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee
Confidence 1222233333333333333333334444444443322111 11000012345677778899999997554322
Q ss_pred EEEe-cccCCCeEEEEEcCCCcEEEEeCCcEE
Q 005123 391 VEIH-NVHDNTVWDLAWHPIGYLLCSNDHTTK 421 (713)
Q Consensus 391 ~~~~-~~h~~~V~~l~~spdg~~laS~Dg~v~ 421 (713)
...+ ...--.|.+|+|..+..++|+.||+.+
T Consensus 422 ~c~ftp~r~~~isdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 422 SCKFTPLRIFEISDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred eeecccceeeehhhhhhccceEEEEecCccee
Confidence 2211 111235778999999999999999544
No 475
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.67 E-value=6.1 Score=40.69 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=145.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...-..|+-.+||..-+++...+.|--.|-.+++.+..-.+....-..|..-+|+..-++-+.. -|.-.|-++.+....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 3445678888999989999888888888988888877766666667778888888776654433 344445444443322
Q ss_pred ---eccCCCCeeEEEEecCCCEEEEEECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 224 ---KSAHKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 224 ---~~~~~~~V~~l~fs~dg~~Las~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.+......+...|.++|++-+++... +.|++|+.- ....-..|+..+||..-++.-.+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 23344567888899999888887531 234444332 23456788899999988887778
Q ss_pred CcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE--eecCCCCeEEEEEeCCCC
Q 005123 292 SLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp~~~ 367 (713)
+.|...|..++.....- +........+.-++.|+.-++....+.+.-||-.+.. -.+ +.+....-.++.... .+
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~-~g 287 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDR-HG 287 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeecc-CC
Confidence 88888888776322111 1212334455556678878887777888888865433 222 333344445555554 44
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
++.++--..|.|.-||-++
T Consensus 288 rVW~sea~agai~rfdpet 306 (353)
T COG4257 288 RVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cEEeeccccCceeecCccc
Confidence 5555444455666666543
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.62 E-value=0.48 Score=54.60 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=55.4
Q ss_pred EEEEecCCCEEEEEECCC-----eEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 233 DLSFCRTDLKFCSCSDDT-----TVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg-----~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
.++|-|.|+.+++-..|| .|+++.-+ .++.-.. .+....+..++|+-....++++ ..+.|.+|-..+..-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 378999999999877554 34454421 1111111 1233456677887655555444 457799998877655
Q ss_pred EEEEccCCCCeEEEEEcCCC
Q 005123 305 LCSFHGHKNMVLCVKWNQNG 324 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg 324 (713)
..+.......+.-+.|+|..
T Consensus 329 YLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEeecCCCcceeeecccc
Confidence 44444455567788999954
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.61 E-value=6.1 Score=47.75 Aligned_cols=114 Identities=8% Similarity=0.034 Sum_probs=69.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-----eeEEEeecCC----------CCeEEEEEeCCCCCEEEEEEC
Q 005123 312 KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-----KELESFRGHR----------KDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 312 ~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~-----~~l~~~~~h~----------~~V~sl~fsp~~~~~lasgs~ 375 (713)
......++|+| +.+.||+....|...|||+... ..+.....+. +....|.|.. +.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC
Confidence 34577899998 5678999999999999999211 1111111111 2234788987 5556666554
Q ss_pred CCcEEEEEcCCCCceE-EEecccCCCeEEEEEcCC--CcEEEEeCCcEEEEecCC
Q 005123 376 DGSIFHWLVGHETPQV-EIHNVHDNTVWDLAWHPI--GYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~-~~~~~h~~~V~~l~~spd--g~~laS~Dg~v~iWd~~~ 427 (713)
..+.++|+++..... .........|.++.-+++ +.++.-....|.+.++..
T Consensus 224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 478999997765422 222224567888888877 333332345555555554
No 478
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.56 E-value=1.2 Score=55.71 Aligned_cols=147 Identities=11% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|...++.|.-+++|.++=. .|+.|+.||.........-...+..++.+.-.-||+..+ .++.. |-|+..+....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~-l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT-LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCCc-eeecCCCCcch
Confidence 5556666766666665543 356777777654422210011223344444444444443 11111 22333332211
Q ss_pred eeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCC------e--eEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 223 NKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARC------Q--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~------~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
..-..|.++..++++.. +.++.+..+|.+|++... + ....+.+-.....+|.++.+ .|+++..+|.
T Consensus 435 ---~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGk 509 (1774)
T PF11725_consen 435 ---AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGK 509 (1774)
T ss_pred ---hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCC
Confidence 12346777888889887 555555556799998543 1 12233333446778888754 6888888898
Q ss_pred EEEEECC
Q 005123 294 VKLWDAK 300 (713)
Q Consensus 294 I~IwDl~ 300 (713)
|+.=|+.
T Consensus 510 LYsa~l~ 516 (1774)
T PF11725_consen 510 LYSADLP 516 (1774)
T ss_pred EEecccc
Confidence 8887764
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.011 Score=64.36 Aligned_cols=137 Identities=11% Similarity=0.206 Sum_probs=94.3
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeecc
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
....|-+++.-++.++.+..|..||-... ....+. -.+...+++|..+++.++ .+-..+.+.+||+++......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34456777766888888889999985532 222222 245566788988887655 556779999999886543222122
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
....-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|...+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 222223377888888888888999999999887766666655888999999998764433
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.51 E-value=1.1 Score=51.37 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS 175 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t 175 (713)
....-++++.-+|.+..++.++.||+|++|+...
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 3445577888889999999999999999998554
No 481
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.49 E-value=0.1 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
...|.+++|+|..++||.++.||.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999999 45543
No 482
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.48 E-value=7.9 Score=41.12 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-Ce----EEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DV----TALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-~V----~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
|++|....+|++|++.-.-..|.+.|-++++.+..+.+... .. ...+|-. +-+++-.+..++.|.|||-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcC
Confidence 67888888999999998889999999999999988876522 11 1123322 3344445566778888876
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.47 E-value=12 Score=42.98 Aligned_cols=231 Identities=10% Similarity=0.068 Sum_probs=118.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccC-CCCeeEEEEecCC-CEEEEEECC--CeEEEEEcCCCeeEEEEcc
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAH-KESVRDLSFCRTD-LKFCSCSDD--TTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~-~~~V~~l~fs~dg-~~Las~s~D--g~I~iwDl~~~~~~~~l~~ 268 (713)
..++..++.+.++|.+....+.... ......+. ....+++++..++ .+|++|+.- +.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4466789999999999988776544 12222222 4556677777655 467777764 455555544444444554
Q ss_pred CCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCceEE----EEccC--CCCeEEEEEcC-CCCEEE
Q 005123 269 HGWDVKSVDWHPT----KS------LLVSGG---KDSLVKLWDAKSGRELC----SFHGH--KNMVLCVKWNQ-NGNWVL 328 (713)
Q Consensus 269 h~~~V~sl~~spd----g~------~L~sgs---~Dg~I~IwDl~t~~~~~----~~~~h--~~~I~si~fsp-dg~~La 328 (713)
.-++|.++++... .. .|++++ .+|.|++.. .|-... ..... -..++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4567888888531 11 455554 467788873 232222 11112 22344444322 256777
Q ss_pred EEECCCeEEEEECC---CCeeEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE
Q 005123 329 TASKDQIIKLYDIR---AMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (713)
Q Consensus 329 tgs~Dg~I~IwDl~---t~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~ 403 (713)
.+..+. -+|+.+. ..+.+..+. +.......+......+..++=.... .|++.+.................|.+
T Consensus 376 ~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 376 LSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 776554 4565553 334432221 2222222222222234555555544 58888876555443333334566777
Q ss_pred EEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 404 LAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 404 l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
.+++....+++..++.+.++.++....
T Consensus 454 a~~~~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 454 ASINDPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEESSSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEECCCEEEEEEeCCcEEEEEEECCce
Confidence 777776666666899999998866554
No 484
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.37 E-value=1.5 Score=51.32 Aligned_cols=111 Identities=8% Similarity=0.165 Sum_probs=73.9
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C----c---------eEEEEccCCCCeEEEEEc--CCCCEEE
Q 005123 273 VKSVDWHP--TKSLLVSGGKDSLVKLWDAKS-------G----R---------ELCSFHGHKNMVLCVKWN--QNGNWVL 328 (713)
Q Consensus 273 V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t-------~----~---------~~~~~~~h~~~I~si~fs--pdg~~La 328 (713)
|+-|.... +...|++|.+||.|.+|.+++ . + +...+. ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554443 456899999999999997631 0 0 111112 34568889998 7788888
Q ss_pred EEECCCeEEEEECCCCee--E-EEeecCCCCeEEEEEeCCC--CC---EEEEEECCCcEEEEEc
Q 005123 329 TASKDQIIKLYDIRAMKE--L-ESFRGHRKDVTALAWHPFH--EE---YFVSGSLDGSIFHWLV 384 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~--l-~~~~~h~~~V~sl~fsp~~--~~---~lasgs~DG~I~Iwd~ 384 (713)
+++....|.||-....+. . ..-..+...|-+|+|-+++ +. .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888876543211 1 1111256678899997743 22 7888999999999888
No 485
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.35 E-value=1.2 Score=51.50 Aligned_cols=111 Identities=14% Similarity=0.269 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECC-----
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIR----- 342 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~----- 342 (713)
..+.-+.-+.-++..++-+...++.|||.+.+....+-. ...+.|.++.|.. |+..+++.+-...|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555555555555555679999999877544322 3467899999865 78888888888889888531
Q ss_pred ----CCeeEEEe--ecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 ----AMKELESF--RGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 ----t~~~l~~~--~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...++.+ ..++ ..|.+..|.. ++.+++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 12233333 3344 6799999998 56555544 347888875
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.28 E-value=1.6 Score=44.62 Aligned_cols=142 Identities=14% Similarity=0.233 Sum_probs=84.6
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C--CeEEEEEcCC----CeeEE---EEccCCCceEEEEE
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFAR----CQEER---SLTGHGWDVKSVDW 278 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D--g~I~iwDl~~----~~~~~---~l~~h~~~V~sl~~ 278 (713)
.-.+||+.+++..........-+.+-.+.+||++|.+|+. + ..|++++-.+ ..-.. .+. ....--++..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 3468999988765544344444555567889999998875 2 3578887543 11110 111 2334445566
Q ss_pred cCCCCEEEEEeCCC-cEEEEECCCC-ceEEE---Ec-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 279 HPTKSLLVSGGKDS-LVKLWDAKSG-RELCS---FH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 279 spdg~~L~sgs~Dg-~I~IwDl~t~-~~~~~---~~-----~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
.+||+.|+.|+.+. +..+|.-+.. ..... +. .....--.+...|||++|+.+..+ -.|||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 67999999988765 3556654321 11111 11 111223356678899999888765 4677988887767
Q ss_pred EeecC
Q 005123 349 SFRGH 353 (713)
Q Consensus 349 ~~~~h 353 (713)
.+..-
T Consensus 204 ~lP~l 208 (243)
T PF07250_consen 204 TLPDL 208 (243)
T ss_pred eCCCC
Confidence 66543
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.25 E-value=2.7 Score=41.86 Aligned_cols=138 Identities=7% Similarity=0.112 Sum_probs=79.2
Q ss_pred CEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCC---C---cEEEE-EcCC----Cceee-
Q 005123 157 RRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G---AIKYW-QNNM----NNVKA- 222 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G---~I~vw-dl~~----~~~~~- 222 (713)
+.|+.+.....|.+|++.+ .....++.. -+.|..+.++..|++|++--++ . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5566657778899999883 344445543 3789999999999999986432 2 55664 2211 11111
Q ss_pred eec---------------------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-E-----EEEc----cC--
Q 005123 223 NKS---------------------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-E-----RSLT----GH-- 269 (713)
Q Consensus 223 ~~~---------------------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~-----~~l~----~h-- 269 (713)
.+. .....+.+++.++....|++|+. +++.+|.+..... . ..+. .|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 111 12345677787775555666654 4788888754322 1 1111 01
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.-....+++. +.++|..++ -.++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224556665 567776654 55666654
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.22 E-value=13 Score=42.40 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=60.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC---eeEEEEecCCCEEEEEEC-------------CCeEEEE
Q 005123 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES---VRDLSFCRTDLKFCSCSD-------------DTTVKVW 255 (713)
Q Consensus 192 l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~---V~~l~fs~dg~~Las~s~-------------Dg~I~iw 255 (713)
+...++|.+++... ..+..+|+. |+++......... -.++...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66677888877655 778888875 4444443322211 346677788888887771 1235555
Q ss_pred EcCCCeeEEEEcc--CC-------------------------CceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceEEE
Q 005123 256 DFARCQEERSLTG--HG-------------------------WDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRELCS 307 (713)
Q Consensus 256 Dl~~~~~~~~l~~--h~-------------------------~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~~~~ 307 (713)
| .+++.+..+.. |- --+++|.+.+..+.|++.++. ..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 5 55555544321 10 127899999955555555554 4788999888887776
Q ss_pred EccC
Q 005123 308 FHGH 311 (713)
Q Consensus 308 ~~~h 311 (713)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6543
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.21 E-value=0.0055 Score=66.49 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=98.3
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEcc
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
....|-+++..++.++.+..|..||-.. +....+. .......++|+.++..+ +.+-..+.+.+||+.+...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455666776688888888999999543 3333333 34566788888877644 4456678899999986432111111
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
.+..-.-+.|++....++.+...+.+.||+..+.+.+...-.|...++.++|.. +++.+.++.|..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~ 181 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNT 181 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHH
Confidence 122222278999888999999999999999988777766666889999999987 455666665543
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=94.00 E-value=1.9 Score=48.07 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
+..|.+++..+..++|++.+.++.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488999988889999999999999999974
No 491
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.96 E-value=0.25 Score=56.68 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=7.7
Q ss_pred CCCCCCCCCCC
Q 005123 513 GAPPLPPGPHP 523 (713)
Q Consensus 513 g~p~~~~~~~~ 523 (713)
|++|.||+..|
T Consensus 525 ~~iP~PP~~pp 535 (1102)
T KOG1924|consen 525 GGIPPPPPLPP 535 (1102)
T ss_pred CCCCCCCCCCC
Confidence 78887777444
No 492
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.83 E-value=3.4 Score=44.72 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCCEEEEEECC-----------CcEEEEeCCCCceEEEEeccCCCEE--EEEEccCCCEEEEEeCC
Q 005123 155 TGRRLITGSQS-----------GEFTLWNGQSFNFEMILQAHDHAIR--SMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 155 dg~~Latgs~d-----------g~V~Iwd~~t~~~~~~l~~h~~~V~--sl~~spdg~~L~sgs~D 207 (713)
++++.++|+.+ ..+..||..+.+............. +.+..-++++.++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666777653 2477788776554332211111111 11112367777787754
No 493
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.82 E-value=3.4 Score=46.50 Aligned_cols=259 Identities=14% Similarity=0.080 Sum_probs=122.0
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
..|+.+..+-.+ .|.+|+.+| |++.+.+..+....... -.+.|..+.-..+ ..+-.|+++|..+. ......+...
T Consensus 206 k~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~q-G~lWiGTenGl~r~-~l~rq~Lq~~ 281 (671)
T COG3292 206 KAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQ-GELWIGTENGLWRT-RLPRQGLQIP 281 (671)
T ss_pred hhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccC-CCEEEeecccceeE-ecCCCCcccc
Confidence 455555555555 477787776 77777665322211111 1233433333322 34445555554432 2222221111
Q ss_pred -ec--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-eEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005123 224 -KS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD-VKSVDWHP--TKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 224 -~~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~-V~sl~~sp--dg~~L~sgs~Dg~I~Iw 297 (713)
.+ ..-+.|.++....+++ |-+++.++.+++-+-. ......+....+. +..++..+ .+..+-....-+.+.+-
T Consensus 282 ~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~va 359 (671)
T COG3292 282 LSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVA 359 (671)
T ss_pred ccccCCccccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEe
Confidence 11 1224566666665665 5556666666554422 2221222211111 11111111 12222222223445555
Q ss_pred ECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeec-CCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRG-HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs 374 (713)
+-.++..+.... .....|+.+++..+++ +-.++..+-+..|+.++ +..+.+..+ ..+.|..|.-.+ +++ |..|+
T Consensus 360 n~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~-dns-LWIGT 436 (671)
T COG3292 360 NGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP-DNS-LWIGT 436 (671)
T ss_pred cCCCCcEEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecC-CCC-EEEec
Confidence 555666555432 2335577777776554 55666665577777776 333333332 346788887777 444 77788
Q ss_pred CCCcEEEEEcCCCCceEE----EecccCCCeEEEEEcCCCcEE
Q 005123 375 LDGSIFHWLVGHETPQVE----IHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~----~~~~h~~~V~~l~~spdg~~l 413 (713)
.+|.++.= .+....... ......+.|..+.+.+++.+-
T Consensus 437 s~Glvk~~-pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw 478 (671)
T COG3292 437 SGGLVKRD-PESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLW 478 (671)
T ss_pred cCCeEecC-ccccchhcccccccCcCCcchhhhhccCCCCceE
Confidence 78766432 111111100 111123457778888888543
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.82 E-value=1.4 Score=50.95 Aligned_cols=222 Identities=13% Similarity=0.222 Sum_probs=111.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.|-..++.+.|.-++--++....|-+ -.+.. ..+..-+..|...+||.|.+.++....+..|.+++..-.-+
T Consensus 74 ~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred hhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccccc
Confidence 45666677776665544444433322 11122 22233467788999999999888777778888876321100
Q ss_pred ----e--eeeccCCCCeeEEEEec-----------------------CCCEEEEEECCCeEEEE--EcCC--------C-
Q 005123 221 ----K--ANKSAHKESVRDLSFCR-----------------------TDLKFCSCSDDTTVKVW--DFAR--------C- 260 (713)
Q Consensus 221 ----~--~~~~~~~~~V~~l~fs~-----------------------dg~~Las~s~Dg~I~iw--Dl~~--------~- 260 (713)
+ ..+... +.-..+-|-. |...|.......++..| |.+- .
T Consensus 147 se~~L~~~dl~ef-~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~p 225 (1243)
T COG5290 147 SEYHLKKSDLVEF-GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERP 225 (1243)
T ss_pred chhhcchhHHHHh-ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhccc
Confidence 0 000000 0111222221 11113333445566667 3210 0
Q ss_pred -eeEEEEc------cCCCce----EEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEE---ccCCCCeEEEEEc
Q 005123 261 -QEERSLT------GHGWDV----KSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSF---HGHKNMVLCVKWN 321 (713)
Q Consensus 261 -~~~~~l~------~h~~~V----~sl~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~~~~---~~h~~~I~si~fs 321 (713)
...+.+. ....++ .-++|-|.|..+++-..||. |.++.-+ |-.-..+ .+....+..++|+
T Consensus 226 rra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn 304 (1243)
T COG5290 226 RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWN 304 (1243)
T ss_pred ccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhh
Confidence 0111111 111122 24899999999998775553 5555432 2211111 1233456667787
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
-....++++ ..+.|++|-..+..-.......-..+.-+.|+|...+.|...
T Consensus 305 ~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 305 LLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred HHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 665555544 456799998877554333333344567778888544444433
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.82 E-value=3.1 Score=45.67 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCCEEEEEECC-----------CcEEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeCC
Q 005123 155 TGRRLITGSQS-----------GEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 155 dg~~Latgs~d-----------g~V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~D 207 (713)
++++.+.|+.+ ..+..||..+.+....-....... .+++..-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45666666643 247788877654433221111111 112221367777777754
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=2.5 Score=46.97 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|..|..++.|..++..+.+|.+.++=.+....-..++..+..|+|=.|+-+.+ |++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC--------------------
Confidence 467788888999888888888665553333333334444444555555543332 22211
Q ss_pred cCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCce
Q 005123 352 GHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
..-.+..++|+|+. +..|+.-+.|..|+|||+.....+
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11234566788854 567778888899999998766544
No 497
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.73 E-value=0.4 Score=55.09 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=4.8
Q ss_pred CCCcccc
Q 005123 623 MAPPMQQ 629 (713)
Q Consensus 623 ~~~~~~~ 629 (713)
|+|.+|-
T Consensus 606 maPvlP~ 612 (1102)
T KOG1924|consen 606 MAPVLPF 612 (1102)
T ss_pred ccccCCC
Confidence 7777755
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.68 E-value=4.2 Score=43.49 Aligned_cols=106 Identities=7% Similarity=-0.010 Sum_probs=52.1
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCceE---EEEeccCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEEcCCCc
Q 005123 155 TGRRLITGSQS-----GEFTLWNGQSFNFE---MILQAHDHAI--RSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~d-----g~V~Iwd~~t~~~~---~~l~~h~~~V--~sl~~spdg~~L~sgs~-----DG~I~vwdl~~~~ 219 (713)
+++++++|+.+ ..+..||+.+.+.. ..+..-.... .+++. -++++.+.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566677654 35667777665431 1221111111 12222 25666667664 2457778877664
Q ss_pred eeeeeccC-CCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCe
Q 005123 220 VKANKSAH-KESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQ 261 (713)
Q Consensus 220 ~~~~~~~~-~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~ 261 (713)
-...-... .......+..-++++++.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 32221111 11222222333666777776653 35678887654
No 499
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=6.3 Score=48.54 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=88.1
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCCEEEEEEc--------cCCCEEEEEeCCCcEEEEEcC----CCcee-----eeecc
Q 005123 164 QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--------HNDNWMVSGDDGGAIKYWQNN----MNNVK-----ANKSA 226 (713)
Q Consensus 164 ~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s--------pdg~~L~sgs~DG~I~vwdl~----~~~~~-----~~~~~ 226 (713)
.|+.+.+|+.++......+.+.+..|..|..- +.=++|++.+.--.|.|+-+. ++... ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 47789999999988888888888888877643 233455554445556665332 11111 12223
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEc----CC------Cee--------------EEEEc-cCCCceEEEEEcCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR------CQE--------------ERSLT-GHGWDVKSVDWHPT 281 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl----~~------~~~--------------~~~l~-~h~~~V~sl~~spd 281 (713)
....|+|+....+|+.|++|- || .+|.+ .+ ... +..+. .+.+.|..|+++..
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 456789999777887776665 44 44443 11 110 01122 45678999999988
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 005123 282 KSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t 301 (713)
-+.+.+-++.++|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999976
No 500
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.57 E-value=1.8 Score=45.25 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=7.1
Q ss_pred CCCCCCCCcCC
Q 005123 659 PNSSGPQMYPQ 669 (713)
Q Consensus 659 ~~~~~~~~~~~ 669 (713)
+--+++||||-
T Consensus 347 ~r~~~p~~~pl 357 (498)
T KOG4849|consen 347 PRHVNPQMFPL 357 (498)
T ss_pred cccCCCCCccc
Confidence 35567777774
Done!